@mavogel/cdk-vscode-server 0.0.99 → 0.0.101

package/scripts/sync-agent-assets.mjs

@@ -0,0 +1,1681 @@
+#!/usr/bin/env node
+
+/**
+ * Keep repository-owned agent instructions portable across Codex and Claude Code.
+ *
+ * Convention:
+ *   AGENTS.md                 canonical shared instructions
+ *   CLAUDE.md                 exactly "@AGENTS.md\n"
+ *   .agents/skills/<name>/    Codex repository skills
+ *   .claude/skills/<name>/    Claude Code repository skills
+ *   .claude/skills/.pilot-sync-manifest.json  last converged ownership baseline
+ *
+ * Existing repositories may instead use an exact in-repository symlink between
+ * the two instruction files or between the two skill roots. Those layouts
+ * already share one physical source and are verified without mirror writes.
+ *
+ * Tracked skills retain .agents/skills as their durable source, while edits on
+ * either side synchronize through the ownership baseline. Untracked and
+ * gitignored skills synchronize in both directions through a trusted baseline
+ * stored under .git/pilot; first-time one-sided skills are copied, independent
+ * two-sided edits fail without overwriting either version.
+ */
+
+import {
+  chmod,
+  copyFile,
+  lstat,
+  mkdir,
+  readdir,
+  readFile,
+  realpath,
+  rename,
+  rm,
+  rmdir,
+  unlink,
+  writeFile,
+} from 'node:fs/promises'
+import { constants as fsConstants } from 'node:fs'
+import { spawnSync } from 'node:child_process'
+import { createHash } from 'node:crypto'
+import path from 'node:path'
+import process from 'node:process'
+import { fileURLToPath } from 'node:url'
+
+const CLAUDE_IMPORT = '@AGENTS.md\n'
+const INSTALLED_PATH = path.join('scripts', 'sync-agent-assets.mjs')
+const OWNERSHIP_MANIFEST = '.pilot-sync-manifest.json'
+const OWNERSHIP_MANIFEST_PATH = `.claude/skills/${OWNERSHIP_MANIFEST}`
+const LOCAL_PROVENANCE_GIT_PATH = 'pilot/sync-agent-assets.json'
+const LOCAL_SKILL_PROVENANCE_GIT_PATH = 'pilot/sync-local-skills.json'
+const SKILL_NAME_PATTERN = /^[a-z0-9]+(?:-[a-z0-9]+)*$/
+const MAX_SKILL_NAME_LENGTH = 64
+
+class UsageError extends Error {}
+
+function usage() {
+  return [
+    'Usage:',
+    '  sync-agent-assets.mjs --check [--repo <path>]',
+    '  sync-agent-assets.mjs --write [--force-migration] [--repo <path>]',
+    '  sync-agent-assets.mjs --install [--force-migration] [--repo <path>]',
+  ].join('\n')
+}
+
+function parseArgs(argv) {
+  let mode = null
+  let repo = null
+  let forceMigration = false
+
+  for (let index = 0; index < argv.length; index += 1) {
+    const arg = argv[index]
+    if (arg === '--check' || arg === '--write' || arg === '--install') {
+      if (mode !== null) throw new UsageError('choose exactly one mode')
+      mode = arg.slice(2)
+      continue
+    }
+    if (arg === '--repo') {
+      index += 1
+      if (index >= argv.length || argv[index].startsWith('--')) {
+        throw new UsageError('--repo requires a path')
+      }
+      repo = argv[index]
+      continue
+    }
+    if (arg === '--force-migration') {
+      if (forceMigration) throw new UsageError('--force-migration may only be provided once')
+      forceMigration = true
+      continue
+    }
+    if (arg.startsWith('--repo=')) {
+      if (repo !== null) throw new UsageError('--repo may only be provided once')
+      repo = arg.slice('--repo='.length)
+      if (repo.length === 0) throw new UsageError('--repo requires a path')
+      continue
+    }
+    if (arg === '--help' || arg === '-h') return { help: true }
+    throw new UsageError(`unknown argument: ${arg}`)
+  }
+
+  if (mode === null) throw new UsageError('a mode is required')
+  if (forceMigration && mode === 'check') {
+    throw new UsageError('--force-migration is only valid with --write or --install')
+  }
+  return { help: false, mode, repo: path.resolve(repo ?? process.cwd()), forceMigration }
+}
+
+async function inspect(candidate) {
+  try {
+    return await lstat(candidate)
+  } catch (error) {
+    if (error?.code === 'ENOENT') return null
+    throw error
+  }
+}
+
+async function usesExactSharedPathPair(roots, kind) {
+  const infos = await Promise.all(roots.map(root => inspect(root)))
+  const linkedIndexes = infos.flatMap((info, index) => (info?.isSymbolicLink() ? [index] : []))
+  if (linkedIndexes.length !== 1) return false
+
+  const linkedIndex = linkedIndexes[0]
+  const targetIndex = linkedIndex === 0 ? 1 : 0
+  const targetInfo = infos[targetIndex]
+  const targetMatches = kind === 'directory' ? targetInfo?.isDirectory() : targetInfo?.isFile()
+  if (!targetMatches || targetInfo.isSymbolicLink()) return false
+
+  try {
+    const [linkedRealpath, targetRealpath] = await Promise.all([
+      realpath(roots[linkedIndex]),
+      realpath(roots[targetIndex]),
+    ])
+    return linkedRealpath === targetRealpath
+  } catch {
+    return false
+  }
+}
+
+async function usesSharedSkillRoot(repo) {
+  return usesExactSharedPathPair(
+    [path.join(repo, '.agents', 'skills'), path.join(repo, '.claude', 'skills')],
+    'directory',
+  )
+}
+
+async function usesSharedInstructions(repo) {
+  return usesExactSharedPathPair([path.join(repo, 'AGENTS.md'), path.join(repo, 'CLAUDE.md')], 'file')
+}
+
+function generatedInstructionSource(contents, expectedTarget) {
+  const header = contents.split(/\r?\n/).slice(0, 16).join('\n')
+  if (!/GENERATED FILE[^\n]*DO NOT EDIT/i.test(header)) return null
+  const source = header.match(/\bSource:\s*([^|\r\n]+)/i)?.[1]?.trim()
+  const target = header.match(/\bTarget:\s*([^|\r\n]+)/i)?.[1]?.trim()
+  if (!source || target !== expectedTarget) return null
+  return source
+}
+
+async function usesExternalGeneratedInstructions(repo) {
+  const agents = path.join(repo, 'AGENTS.md')
+  const claude = path.join(repo, 'CLAUDE.md')
+  const [agentsInfo, claudeInfo] = await Promise.all([inspect(agents), inspect(claude)])
+  if (
+    !agentsInfo?.isFile() ||
+    agentsInfo.isSymbolicLink() ||
+    !claudeInfo?.isFile() ||
+    claudeInfo.isSymbolicLink()
+  ) {
+    return false
+  }
+  const [agentsContents, claudeContents] = await Promise.all([
+    readFile(agents, 'utf8'),
+    readFile(claude, 'utf8'),
+  ])
+  const agentsSource = generatedInstructionSource(agentsContents, 'AGENTS.md')
+  const claudeSource = generatedInstructionSource(claudeContents, 'CLAUDE.md')
+  return agentsSource !== null && agentsSource === claudeSource
+}
+
+async function assertSafeRepoLayout(repo, { includeInstallerDestination = false } = {}) {
+  const [sharedSkillRoot, sharedInstructions] = await Promise.all([
+    usesSharedSkillRoot(repo),
+    usesSharedInstructions(repo),
+  ])
+  const components = [
+    ['AGENTS.md'],
+    ['CLAUDE.md'],
+    ['.agents'],
+    ['.agents', 'skills'],
+    ['.claude'],
+    ['.claude', 'skills'],
+    ['.claude', 'skills', OWNERSHIP_MANIFEST],
+    ['.claude', 'rules'],
+  ]
+  if (includeInstallerDestination) {
+    components.push(['scripts'], INSTALLED_PATH.split(path.sep))
+  }
+
+  for (const segments of components) {
+    const candidate = path.join(repo, ...segments)
+    const info = await inspect(candidate)
+    if (info?.isSymbolicLink()) {
+      const repositoryPath = segments.join('/')
+      if (sharedSkillRoot && (repositoryPath === '.agents/skills' || repositoryPath === '.claude/skills')) {
+        continue
+      }
+      if (sharedInstructions && (repositoryPath === 'AGENTS.md' || repositoryPath === 'CLAUDE.md')) {
+        continue
+      }
+      throw new Error(`refusing symlinked repository path: ${segments.join('/')}`)
+    }
+  }
+  return { sharedSkillRoot, sharedInstructions }
+}
+
+async function sharedRootSkills(repo) {
+  const root = path.join(repo, '.claude', 'skills')
+  const entries = await readdir(root, { withFileTypes: true })
+  return entries
+    .filter(entry => !entry.name.startsWith('.') && entry.isDirectory())
+    .sort((left, right) => left.name.localeCompare(right.name))
+    .map(entry => ({ name: entry.name, sourceRoot: root }))
+}
+
+async function discoverRuleFiles(repo) {
+  const rulesRoot = path.join(repo, '.claude', 'rules')
+  const rootInfo = await inspect(rulesRoot)
+  if (rootInfo === null) return []
+  if (!rootInfo.isDirectory()) throw new Error('.claude/rules must be a directory')
+
+  const rules = []
+  async function visit(directory) {
+    const entries = await readdir(directory, { withFileTypes: true })
+    for (const entry of entries.sort((left, right) => left.name.localeCompare(right.name))) {
+      const candidate = path.join(directory, entry.name)
+      const candidateRelative = relative(repo, candidate)
+      const info = await lstat(candidate)
+      if (info.isSymbolicLink()) {
+        throw new Error(`refusing symlinked repository rule path: ${candidateRelative}`)
+      }
+      if (info.isDirectory()) {
+        await visit(candidate)
+      } else if (info.isFile() && entry.name.endsWith('.md') && entry.name !== 'README.md') {
+        if (!isGitIgnored(repo, candidateRelative)) rules.push(candidateRelative)
+      }
+    }
+  }
+
+  await visit(rulesRoot)
+  return rules.sort()
+}
+
+function extractRuleReferences(agentsContents) {
+  const references = new Set()
+  const patterns = [
+    /`(\.claude\/rules\/[^`\n]+?\.md)(?:#[^`\n]*)?`/g,
+    /\((\.claude\/rules\/[^)\n]+?\.md)(?:#[^)\n]*)?\)/g,
+    /\.claude\/rules\/[A-Za-z0-9._~%+@/-]+\.md(?=$|[\s`"'()<>{}\[\],:;#])/g,
+  ]
+  for (const pattern of patterns) {
+    for (const match of agentsContents.matchAll(pattern)) {
+      const reference = match[1] ?? match[0]
+      if (match[1] === undefined && (match.index ?? 0) > 0) {
+        const preceding = agentsContents[(match.index ?? 0) - 1]
+        if (/[A-Za-z0-9_~$./-]/.test(preceding)) continue
+      }
+      if (!/[?*\[\]{}]/.test(reference)) references.add(reference)
+    }
+  }
+  return [...references].sort()
+}
+
+async function auditRuleRouting(repo, agentsContents) {
+  const rules = await discoverRuleFiles(repo)
+  const references = extractRuleReferences(agentsContents)
+  const issues = []
+
+  for (const rule of rules) {
+    if (!references.includes(rule)) {
+      issues.push(`AGENTS.md is missing exact rule reference: ${rule}; add this path to the rule index`)
+    }
+  }
+
+  const rulesRoot = path.resolve(repo, '.claude', 'rules')
+  for (const reference of references) {
+    const candidate = path.resolve(repo, ...reference.split('/'))
+    if (candidate !== rulesRoot && !candidate.startsWith(`${rulesRoot}${path.sep}`)) {
+      issues.push(`AGENTS.md has invalid rule reference outside .claude/rules: ${reference}; remove it`)
+      continue
+    }
+    const info = await inspect(candidate)
+    if (info === null || !info.isFile() || info.isSymbolicLink()) {
+      issues.push(`AGENTS.md references missing rule file: ${reference}; update or remove the stale reference`)
+    }
+  }
+  return issues
+}
+
+function relative(repo, candidate) {
+  return path.relative(repo, candidate).split(path.sep).join('/') || '.'
+}
+
+async function assetRecord(asset) {
+  if (asset?.kind !== 'file') return null
+  const bytes = await readFile(asset.absolute)
+  return {
+    sha256: createHash('sha256').update(bytes).digest('hex'),
+    // Git preserves only whether a file is executable, while checkout umasks
+    // decide which of the three execute bits appear on disk. Store that
+    // portable capability instead of a machine-specific permission mask.
+    executableMode: asset.info.mode & 0o111 ? 0o111 : 0,
+  }
+}
+
+function recordsEqual(left, right) {
+  return (
+    left !== null &&
+    right !== null &&
+    left.sha256 === right.sha256 &&
+    left.executableMode === right.executableMode
+  )
+}
+
+function comparePaths(left, right) {
+  return left < right ? -1 : left > right ? 1 : 0
+}
+
+function serializeOwnershipManifest(files) {
+  const sortedFiles = Object.fromEntries([...files.entries()].sort(([left], [right]) => comparePaths(left, right)))
+  return `${JSON.stringify({ version: 1, files: sortedFiles }, null, 2)}\n`
+}
+
+function parseOwnershipManifest(raw, label) {
+  let parsed
+  try {
+    parsed = JSON.parse(raw)
+  } catch {
+    throw new Error(`${label} contains invalid JSON; inspect or remove it before syncing`)
+  }
+  if (parsed?.version !== 1 || parsed.files === null || typeof parsed.files !== 'object' || Array.isArray(parsed.files)) {
+    throw new Error(`${label} has an unsupported schema; inspect or remove it before syncing`)
+  }
+
+  const files = new Map()
+  for (const [assetPath, record] of Object.entries(parsed.files)) {
+    const parts = assetPath.split('/')
+    const normalized = path.posix.normalize(assetPath)
+    const validPath =
+      parts.length >= 2 &&
+      normalized === assetPath &&
+      !path.posix.isAbsolute(assetPath) &&
+      !parts.includes('..') &&
+      assetPath !== OWNERSHIP_MANIFEST
+    const validRecord =
+      record !== null &&
+      typeof record === 'object' &&
+      !Array.isArray(record) &&
+      /^[a-f0-9]{64}$/.test(record.sha256) &&
+      Number.isInteger(record.executableMode) &&
+      (record.executableMode === 0 || record.executableMode === 0o111)
+    if (!validPath || !validRecord) {
+      throw new Error(`${label} has an invalid managed entry: ${assetPath}`)
+    }
+    files.set(assetPath, {
+      sha256: record.sha256,
+      executableMode: record.executableMode,
+    })
+  }
+
+  return { exists: true, files, canonical: raw === serializeOwnershipManifest(files) }
+}
+
+async function loadOwnershipManifest(repo) {
+  const manifestPath = path.join(repo, ...OWNERSHIP_MANIFEST_PATH.split('/'))
+  const info = await inspect(manifestPath)
+  if (info === null) return { exists: false, files: new Map(), canonical: true }
+  if (!info.isFile() || info.isSymbolicLink()) {
+    throw new Error(`${OWNERSHIP_MANIFEST_PATH} must be a regular file`)
+  }
+  return parseOwnershipManifest(await readFile(manifestPath, 'utf8'), OWNERSHIP_MANIFEST_PATH)
+}
+
+function decodeFrontmatterScalar(value, lines, lineIndex, label, field) {
+  if (/^[|>][+-]?$/.test(value)) {
+    const block = []
+    for (let index = lineIndex + 1; index < lines.length; index += 1) {
+      const line = lines[index]
+      if (line.length > 0 && !/^\s/.test(line)) break
+      block.push(line)
+    }
+    value = block.join('\n').trim()
+  } else if (value.startsWith('"')) {
+    try {
+      value = JSON.parse(value)
+    } catch {
+      throw new Error(`${label}: SKILL.md frontmatter has an invalid quoted ${field}`)
+    }
+  } else if (value.startsWith("'")) {
+    if (!value.endsWith("'") || value.length < 2) {
+      throw new Error(`${label}: SKILL.md frontmatter has an invalid quoted ${field}`)
+    }
+    value = value.slice(1, -1).replaceAll("''", "'")
+  } else {
+    value = value.replace(/(^|\s)#.*$/, '').trimEnd()
+  }
+
+  if (typeof value !== 'string' || value.trim().length === 0) {
+    throw new Error(`${label}: SKILL.md frontmatter ${field} must be a non-empty string`)
+  }
+  return value
+}
+
+function extractFrontmatterMetadata(contents, label) {
+  const lines = contents.split(/\r?\n/)
+  if (lines[0] !== '---') {
+    throw new Error(`${label}: SKILL.md must start with YAML frontmatter`)
+  }
+
+  const closing = lines.indexOf('---', 1)
+  if (closing === -1) {
+    throw new Error(`${label}: SKILL.md frontmatter has no closing --- delimiter`)
+  }
+
+  const fields = new Map([
+    ['name', []],
+    ['description', []],
+  ])
+  for (let index = 1; index < closing; index += 1) {
+    const line = lines[index]
+    if (line.includes('\t')) {
+      throw new Error(`${label}: SKILL.md frontmatter must not contain tabs`)
+    }
+    const match = /^(name|description)\s*:\s*(.*?)\s*$/.exec(line)
+    if (match) fields.get(match[1]).push({ value: match[2], lineIndex: index })
+  }
+
+  if (fields.get('name').length !== 1) {
+    throw new Error(`${label}: SKILL.md frontmatter must contain exactly one top-level name field`)
+  }
+  if (fields.get('description').length !== 1) {
+    throw new Error(`${label}: SKILL.md frontmatter must contain exactly one top-level description field`)
+  }
+
+  const name = fields.get('name')[0]
+  const description = fields.get('description')[0]
+  return {
+    name: decodeFrontmatterScalar(name.value, lines, name.lineIndex, label, 'name'),
+    description: decodeFrontmatterScalar(
+      description.value,
+      lines,
+      description.lineIndex,
+      label,
+      'description',
+    ),
+  }
+}
+
+function validateSkillName(name, label) {
+  if (name.length > MAX_SKILL_NAME_LENGTH || !SKILL_NAME_PATTERN.test(name)) {
+    throw new Error(
+      `${label}: skill names must be 1-${MAX_SKILL_NAME_LENGTH} lowercase letters, numbers, or single hyphens`,
+    )
+  }
+}
+
+async function discoverSkills(repo) {
+  const sourceRoot = path.join(repo, '.agents', 'skills')
+  const sourceInfo = await inspect(sourceRoot)
+  if (sourceInfo === null) return []
+  if (!sourceInfo.isDirectory()) {
+    throw new Error('.agents/skills must exist and be a directory')
+  }
+
+  const entries = await readdir(sourceRoot, { withFileTypes: true })
+  const skills = []
+  for (const entry of entries.sort((left, right) => left.name.localeCompare(right.name))) {
+    if (entry.name.startsWith('.') || !entry.isDirectory()) continue
+
+    const label = `.agents/skills/${entry.name}`
+    const skillFileLabel = `${label}/SKILL.md`
+    if (isGitIgnored(repo, skillFileLabel)) continue
+
+    validateSkillName(entry.name, label)
+    const skillRoot = path.join(sourceRoot, entry.name)
+    const skillFile = path.join(skillRoot, 'SKILL.md')
+    const skillInfo = await inspect(skillFile)
+    if (skillInfo === null || !skillInfo.isFile()) {
+      throw new Error(`${label}: SKILL.md is required`)
+    }
+
+    const { name: declaredName } = extractFrontmatterMetadata(await readFile(skillFile, 'utf8'), label)
+    validateSkillName(declaredName, label)
+    if (declaredName !== entry.name) {
+      throw new Error(`${label}: frontmatter name ${JSON.stringify(declaredName)} must match the directory name`)
+    }
+
+    skills.push({ name: entry.name, sourceRoot })
+  }
+  return skills
+}
+
+function runGit(repo, args) {
+  const result = spawnSync('git', ['-C', repo, ...args], {
+    encoding: null,
+    maxBuffer: 16 * 1024 * 1024,
+  })
+  if (result.error) {
+    if (result.error.code === 'ENOENT') {
+      throw new Error('git is required to distinguish tracked mirror assets from agent-local skills')
+    }
+    throw result.error
+  }
+  return result
+}
+
+function isGitIgnored(repo, candidate) {
+  const result = runGit(repo, ['check-ignore', '--quiet', '--', candidate])
+  if (result.status === 0) return true
+  if (result.status === 1) return false
+  const message = result.stderr.toString('utf8').trim()
+  if (/not a git repository/i.test(message)) return false
+  throw new Error(`git check-ignore failed: ${message}`)
+}
+
+function localProvenancePath(repo) {
+  const result = runGit(repo, ['rev-parse', '--git-path', LOCAL_PROVENANCE_GIT_PATH])
+  if (result.status !== 0) {
+    const message = result.stderr.toString('utf8').trim()
+    if (/not a git repository/i.test(message)) return null
+    throw new Error(`git rev-parse --git-path failed: ${message}`)
+  }
+  const gitPath = result.stdout.toString('utf8').trim()
+  if (!gitPath) throw new Error('git rev-parse --git-path returned an empty provenance path')
+  return path.isAbsolute(gitPath) ? gitPath : path.resolve(repo, gitPath)
+}
+
+async function loadLocalProvenance(repo) {
+  const provenancePath = localProvenancePath(repo)
+  if (provenancePath === null) return { exists: false, files: new Map(), canonical: true, path: null }
+  const info = await inspect(provenancePath)
+  if (info === null || !info.isFile() || info.isSymbolicLink()) {
+    return { exists: false, files: new Map(), canonical: true, path: provenancePath }
+  }
+  try {
+    return {
+      ...parseOwnershipManifest(await readFile(provenancePath, 'utf8'), 'trusted local provenance'),
+      path: provenancePath,
+    }
+  } catch {
+    return { exists: false, files: new Map(), canonical: false, path: provenancePath }
+  }
+}
+
+function localSkillProvenancePath(repo) {
+  const result = runGit(repo, ['rev-parse', '--git-path', LOCAL_SKILL_PROVENANCE_GIT_PATH])
+  if (result.status !== 0) {
+    const message = result.stderr.toString('utf8').trim()
+    if (/not a git repository/i.test(message)) return null
+    throw new Error(`git rev-parse --git-path failed: ${message}`)
+  }
+  const gitPath = result.stdout.toString('utf8').trim()
+  if (!gitPath) throw new Error('git rev-parse --git-path returned an empty local-skill provenance path')
+  return path.isAbsolute(gitPath) ? gitPath : path.resolve(repo, gitPath)
+}
+
+function serializeLocalSkillProvenance(skills) {
+  return `${JSON.stringify(
+    {
+      version: 1,
+      skills: Object.fromEntries([...skills.entries()].sort(([left], [right]) => comparePaths(left, right))),
+    },
+    null,
+    2,
+  )}\n`
+}
+
+async function loadLocalSkillProvenance(repo) {
+  const provenancePath = localSkillProvenancePath(repo)
+  if (provenancePath === null) return { path: null, skills: new Map() }
+  const info = await inspect(provenancePath)
+  if (info === null) return { path: provenancePath, skills: new Map() }
+  if (!info.isFile() || info.isSymbolicLink()) {
+    throw new Error('trusted local-skill provenance must be a regular file')
+  }
+  let parsed
+  try {
+    parsed = JSON.parse(await readFile(provenancePath, 'utf8'))
+  } catch (error) {
+    throw new Error(`trusted local-skill provenance is unreadable: ${error.message}`)
+  }
+  if (parsed?.version !== 1 || parsed.skills === null || typeof parsed.skills !== 'object' || Array.isArray(parsed.skills)) {
+    throw new Error('trusted local-skill provenance has an unsupported schema')
+  }
+  const skills = new Map()
+  for (const [name, digest] of Object.entries(parsed.skills)) {
+    validateSkillName(name, 'trusted local-skill provenance')
+    if (typeof digest !== 'string' || !/^[a-f0-9]{64}$/.test(digest)) {
+      throw new Error(`trusted local-skill provenance has an invalid digest for ${name}`)
+    }
+    skills.set(name, digest)
+  }
+  return { path: provenancePath, skills }
+}
+
+async function skillDigest(skillRoot, name) {
+  const tree = await collectTree(skillRoot, { rejectSymlinks: true })
+  const skillFile = tree.files.get('SKILL.md')
+  if (skillFile === undefined || skillFile.kind !== 'file') {
+    throw new Error(`${relative(path.dirname(path.dirname(path.dirname(skillRoot))), skillRoot)}: SKILL.md is required`)
+  }
+  const label = relative(path.dirname(path.dirname(path.dirname(skillRoot))), skillRoot)
+  const { name: declaredName } = extractFrontmatterMetadata(await readFile(skillFile.absolute, 'utf8'), label)
+  validateSkillName(declaredName, label)
+  if (declaredName !== name) {
+    throw new Error(`${label}: frontmatter name ${JSON.stringify(declaredName)} must match the directory name`)
+  }
+  const digest = createHash('sha256')
+  for (const [file, asset] of [...tree.files.entries()].sort(([left], [right]) => comparePaths(left, right))) {
+    digest.update(file)
+    digest.update('\0')
+    digest.update(String(asset.info.mode & 0o111))
+    digest.update('\0')
+    digest.update(await readFile(asset.absolute))
+    digest.update('\0')
+  }
+  return digest.digest('hex')
+}
+
+async function skillTreeContains(largerRoot, smallerRoot) {
+  const [larger, smaller] = await Promise.all([
+    collectTree(largerRoot, { rejectSymlinks: true }),
+    collectTree(smallerRoot, { rejectSymlinks: true }),
+  ])
+  for (const [file, smallerAsset] of smaller.files) {
+    const largerAsset = larger.files.get(file)
+    if (largerAsset === undefined || !(await filesMatch(smallerAsset, largerAsset))) return false
+  }
+  return true
+}
+
+async function replaceSkillDirectory(source, destination) {
+  const suffix = `${process.pid}-${Math.random().toString(16).slice(2)}`
+  const temporary = `${destination}.pilot-sync-${suffix}`
+  const backup = `${destination}.pilot-backup-${suffix}`
+  await rm(temporary, { recursive: true, force: true })
+  await rm(backup, { recursive: true, force: true })
+  await mkdir(temporary, { recursive: true })
+  const tree = await collectTree(source, { rejectSymlinks: true })
+  for (const directory of [...tree.directories].sort()) {
+    await mkdir(path.join(temporary, directory), { recursive: true })
+  }
+  for (const [file, asset] of tree.files) {
+    await atomicCopy(asset.absolute, path.join(temporary, file), asset.info.mode)
+  }
+
+  const destinationInfo = await inspect(destination)
+  try {
+    if (destinationInfo !== null) await rename(destination, backup)
+    await rename(temporary, destination)
+    await rm(backup, { recursive: true, force: true })
+  } catch (error) {
+    if ((await inspect(destination)) === null && (await inspect(backup)) !== null) {
+      await rename(backup, destination)
+    }
+    await rm(temporary, { recursive: true, force: true })
+    throw error
+  }
+}
+
+async function skillDirectories(root) {
+  const info = await inspect(root)
+  if (info === null) return new Map()
+  if (!info.isDirectory() || info.isSymbolicLink()) {
+    throw new Error(`${root}: skill root must be a regular directory`)
+  }
+  const entries = new Map()
+  for (const entry of await readdir(root, { withFileTypes: true })) {
+    if (entry.name.startsWith('.')) continue
+    entries.set(entry.name, path.join(root, entry.name))
+  }
+  return entries
+}
+
+function hasTrackedSkillAssets(repo, name) {
+  const result = runGit(repo, [
+    'ls-files',
+    '-z',
+    '--',
+    `.agents/skills/${name}`,
+    `.claude/skills/${name}`,
+  ])
+  if (result.status !== 0) return false
+  return result.stdout.length > 0
+}
+
+async function discoverIgnoredSkillPairs(repo) {
+  const canonicalRoot = path.join(repo, '.agents', 'skills')
+  const mirrorRoot = path.join(repo, '.claude', 'skills')
+  const [canonicalEntries, mirrorEntries] = await Promise.all([
+    skillDirectories(canonicalRoot),
+    skillDirectories(mirrorRoot),
+  ])
+  const names = new Set([...canonicalEntries.keys(), ...mirrorEntries.keys()])
+  const pairs = []
+  for (const name of [...names].sort()) {
+    validateSkillName(name, `local skill ${name}`)
+    const canonical = canonicalEntries.get(name) ?? path.join(canonicalRoot, name)
+    const mirror = mirrorEntries.get(name) ?? path.join(mirrorRoot, name)
+    const [canonicalInfo, mirrorInfo] = await Promise.all([inspect(canonical), inspect(mirror)])
+
+    if (mirrorInfo?.isSymbolicLink() && canonicalInfo?.isDirectory() && !canonicalInfo.isSymbolicLink()) {
+      if ((await realpath(mirror)) === (await realpath(canonical))) continue
+    }
+    if (canonicalInfo?.isSymbolicLink() || mirrorInfo?.isSymbolicLink()) {
+      throw new Error(`local skill ${name}: symbolic links must point from the Claude mirror to its canonical skill`)
+    }
+    if (canonicalInfo !== null && !canonicalInfo.isDirectory()) {
+      throw new Error(`.agents/skills/${name}: skill must be a directory`)
+    }
+    if (mirrorInfo !== null && !mirrorInfo.isDirectory()) {
+      throw new Error(`.claude/skills/${name}: skill must be a directory`)
+    }
+    const tracked = hasTrackedSkillAssets(repo, name)
+    if (tracked && canonicalInfo !== null && mirrorInfo !== null) continue
+
+    const [canonicalSkillFile, mirrorSkillFile] = await Promise.all([
+      inspect(path.join(canonical, 'SKILL.md')),
+      inspect(path.join(mirror, 'SKILL.md')),
+    ])
+    if (canonicalSkillFile === null && mirrorSkillFile === null) continue
+    if (canonicalInfo === null || mirrorInfo === null) {
+      const existingFile = canonicalInfo === null ? mirrorSkillFile : canonicalSkillFile
+      const existingRoot = canonicalInfo === null ? mirror : canonical
+      if (existingFile === null || !existingFile.isFile() || existingFile.isSymbolicLink()) continue
+      try {
+        extractFrontmatterMetadata(await readFile(path.join(existingRoot, 'SKILL.md'), 'utf8'), `local skill ${name}`)
+      } catch {
+        // A one-sided directory without valid skill metadata is private agent
+        // state, not a portable skill. Preserve it without blocking all sync.
+        continue
+      }
+    }
+
+    pairs.push({ name, canonical, mirror, canonicalInfo, mirrorInfo })
+  }
+  return pairs
+}
+
+async function validatePairedMirrorSkills(repo) {
+  const canonicalRoot = path.join(repo, '.agents', 'skills')
+  const mirrorRoot = path.join(repo, '.claude', 'skills')
+  const mirrors = await skillDirectories(mirrorRoot)
+  for (const [name, mirror] of mirrors) {
+    const canonical = path.join(canonicalRoot, name)
+    const [canonicalInfo, mirrorInfo, mirrorSkill] = await Promise.all([
+      inspect(canonical),
+      inspect(mirror),
+      inspect(path.join(mirror, 'SKILL.md')),
+    ])
+    if (canonicalInfo === null || mirrorSkill === null) continue
+    if (mirrorInfo?.isSymbolicLink() && canonicalInfo.isDirectory() && !canonicalInfo.isSymbolicLink()) {
+      if ((await realpath(mirror)) === (await realpath(canonical))) continue
+    }
+    await skillDigest(mirror, name)
+  }
+}
+
+async function planIgnoredSkillSync(repo) {
+  const provenance = await loadLocalSkillProvenance(repo)
+  const pairs = await discoverIgnoredSkillPairs(repo)
+  const actions = []
+  const issues = []
+  const finalDigests = new Map()
+
+  for (const pair of pairs) {
+    const canonicalDigest = pair.canonicalInfo === null ? null : await skillDigest(pair.canonical, pair.name)
+    const mirrorDigest = pair.mirrorInfo === null ? null : await skillDigest(pair.mirror, pair.name)
+    const baseline = provenance.skills.get(pair.name)
+
+    if (canonicalDigest === null || mirrorDigest === null) {
+      const existingPath = canonicalDigest === null ? pair.mirror : pair.canonical
+      const missingPath = canonicalDigest === null ? pair.canonical : pair.mirror
+      const existingDigest = canonicalDigest ?? mirrorDigest
+      if (baseline === undefined) {
+        actions.push({ type: 'replace', source: existingPath, destination: missingPath })
+        finalDigests.set(pair.name, existingDigest)
+      } else if (existingDigest === baseline) {
+        actions.push({ type: 'delete', destination: existingPath })
+      } else {
+        issues.push(`local skill ${pair.name}: one side was deleted while the other changed; preserved both states`)
+      }
+      continue
+    }
+
+    if (canonicalDigest === mirrorDigest) {
+      finalDigests.set(pair.name, canonicalDigest)
+      continue
+    }
+    if (baseline === undefined) {
+      if (await skillTreeContains(pair.mirror, pair.canonical)) {
+        actions.push({ type: 'replace', source: pair.mirror, destination: pair.canonical })
+        finalDigests.set(pair.name, mirrorDigest)
+      } else if (await skillTreeContains(pair.canonical, pair.mirror)) {
+        actions.push({ type: 'replace', source: pair.canonical, destination: pair.mirror })
+        finalDigests.set(pair.name, canonicalDigest)
+      } else {
+        issues.push(`local skill ${pair.name}: both sides differ without a trusted baseline; preserved both versions`)
+      }
+    } else if (canonicalDigest === baseline && mirrorDigest !== baseline) {
+      actions.push({ type: 'replace', source: pair.mirror, destination: pair.canonical })
+      finalDigests.set(pair.name, mirrorDigest)
+    } else if (mirrorDigest === baseline && canonicalDigest !== baseline) {
+      actions.push({ type: 'replace', source: pair.canonical, destination: pair.mirror })
+      finalDigests.set(pair.name, canonicalDigest)
+    } else {
+      issues.push(`local skill ${pair.name}: both sides changed; preserved both versions`)
+    }
+  }
+
+  return { provenance, actions, issues, finalDigests }
+}
+
+async function auditIgnoredSkills(repo) {
+  const plan = await planIgnoredSkillSync(repo)
+  return [
+    ...plan.issues,
+    ...plan.actions.map(action => {
+      const destination = relative(repo, action.destination)
+      if (action.type === 'delete') return `${destination}: local skill deletion has not synchronized`
+      const side = destination.startsWith('.agents/') ? 'Codex' : 'Claude'
+      return `${destination}: missing ${side} counterpart or local skill drift`
+    }),
+  ]
+}
+
+async function synchronizeIgnoredSkills(repo) {
+  const plan = await planIgnoredSkillSync(repo)
+  if (plan.issues.length > 0) throw new Error(plan.issues.join('\n'))
+  for (const action of plan.actions) {
+    if (action.type === 'replace') {
+      await replaceSkillDirectory(action.source, action.destination)
+    } else {
+      await rm(action.destination, { recursive: true, force: true })
+    }
+  }
+  if (plan.provenance.path !== null) {
+    await atomicWriteText(
+      plan.provenance.path,
+      serializeLocalSkillProvenance(plan.finalDigests),
+      0o600,
+    )
+  }
+}
+
+async function synchronizeRootInstructions(repo) {
+  const agents = path.join(repo, 'AGENTS.md')
+  const claude = path.join(repo, 'CLAUDE.md')
+  const [agentsInfo, claudeInfo] = await Promise.all([inspect(agents), inspect(claude)])
+  if (agentsInfo === null && claudeInfo === null) return
+  if (agentsInfo !== null && (!agentsInfo.isFile() || agentsInfo.isSymbolicLink())) {
+    throw new Error('AGENTS.md must be a regular file')
+  }
+  if (claudeInfo !== null && (!claudeInfo.isFile() || claudeInfo.isSymbolicLink())) {
+    throw new Error('CLAUDE.md must be a regular file')
+  }
+
+  if (agentsInfo === null) {
+    const claudeContents = await readFile(claude, 'utf8')
+    if (claudeContents === CLAUDE_IMPORT) {
+      throw new Error('CLAUDE.md imports AGENTS.md, but AGENTS.md is missing')
+    }
+    await atomicWriteText(agents, claudeContents, 0o644)
+    await atomicWriteText(claude, CLAUDE_IMPORT, 0o644)
+    return
+  }
+
+  if (claudeInfo === null) {
+    await atomicWriteText(claude, CLAUDE_IMPORT, 0o644)
+    return
+  }
+  const claudeContents = await readFile(claude, 'utf8')
+  if (claudeContents !== CLAUDE_IMPORT) {
+    if (isTrivialClaude(claudeContents)) {
+      await atomicWriteText(claude, CLAUDE_IMPORT, 0o644)
+      return
+    }
+    throw new Error(
+      'refusing to overwrite nontrivial CLAUDE.md; AGENTS.md and CLAUDE.md both contain instructions, so both were preserved for explicit reconciliation',
+    )
+  }
+}
+
+function isIgnoredCanonicalAsset(repo, assetPath) {
+  const skillName = assetPath.split('/')[0]
+  return Boolean(skillName) && isGitIgnored(repo, `.agents/skills/${skillName}/SKILL.md`)
+}
+
+function trackedSkillAssets(repo) {
+  const worktree = runGit(repo, ['rev-parse', '--is-inside-work-tree'])
+  if (worktree.status !== 0) {
+    const message = worktree.stderr.toString('utf8').trim()
+    if (/not a git repository/i.test(message)) return new Set()
+    throw new Error(`git rev-parse failed: ${message}`)
+  }
+
+  const tracked = runGit(repo, ['ls-files', '-z', '--', '.claude/skills'])
+  if (tracked.status !== 0) {
+    throw new Error(`git ls-files failed: ${tracked.stderr.toString('utf8').trim()}`)
+  }
+
+  const assets = new Set(
+    tracked.stdout
+      .toString('utf8')
+      .split('\0')
+      .filter(candidate => candidate === '.claude/skills' || candidate.startsWith('.claude/skills/'))
+      .map(candidate => candidate.split(path.sep).join('/')),
+  )
+  assets.delete(OWNERSHIP_MANIFEST_PATH)
+  return assets
+}
+
+async function trackedMirrorOnlyAssets(repo, canonicalNames, trackedAssets) {
+  const prefix = '.claude/skills/'
+  const assets = []
+  for (const normalized of [...trackedAssets].sort()) {
+    if (!normalized.startsWith(prefix)) continue
+    const remainder = normalized.slice(prefix.length)
+    const skillName = remainder.split('/')[0]
+    if (!skillName || canonicalNames.has(skillName)) continue
+
+    const absolute = path.join(repo, ...normalized.split('/'))
+    if ((await inspect(absolute)) !== null) assets.push({ absolute, relative: normalized })
+  }
+  return assets
+}
+
+async function collectTree(root, { rejectSymlinks = false } = {}) {
+  const files = new Map()
+  const directories = new Set()
+
+  async function visit(current, currentRelative) {
+    const entries = await readdir(current, { withFileTypes: true })
+    for (const entry of entries.sort((left, right) => left.name.localeCompare(right.name))) {
+      const absolute = path.join(current, entry.name)
+      const itemRelative = currentRelative ? path.join(currentRelative, entry.name) : entry.name
+      const normalized = itemRelative.split(path.sep).join('/')
+      const info = await lstat(absolute)
+
+      if (info.isSymbolicLink()) {
+        if (rejectSymlinks) throw new Error(`${normalized}: symbolic links are not portable skill assets`)
+        files.set(normalized, { absolute, info, kind: 'symlink' })
+      } else if (info.isDirectory()) {
+        directories.add(normalized)
+        await visit(absolute, itemRelative)
+      } else if (info.isFile()) {
+        files.set(normalized, { absolute, info, kind: 'file' })
+      } else {
+        throw new Error(`${normalized}: unsupported filesystem entry`)
+      }
+    }
+  }
+
+  await visit(root, '')
+  return { files, directories }
+}
+
+function hasTrackedPath(trackedAssets, candidate) {
+  if (trackedAssets.has(candidate)) return true
+  const prefix = `${candidate}/`
+  return [...trackedAssets].some(tracked => tracked.startsWith(prefix))
+}
+
+function hasManifestPath(manifestFiles, candidate) {
+  if (manifestFiles.has(candidate)) return true
+  const prefix = `${candidate}/`
+  return [...manifestFiles.keys()].some(managed => managed.startsWith(prefix))
+}
+
+function canonicalPathForMirror(mirrorPath) {
+  return mirrorPath.replace(/^\.claude\/skills(?=\/|$)/, '.agents/skills')
+}
+
+async function compareSkill(repo, name, sourceRoot, targetRoot, trackedAssets) {
+  const sourceSkill = path.join(sourceRoot, name)
+  const targetSkill = path.join(targetRoot, name)
+  const issues = []
+  const targetInfo = await inspect(targetSkill)
+  const sourceTree = await collectTree(sourceSkill, { rejectSymlinks: true })
+
+  if (targetInfo === null || !targetInfo.isDirectory() || targetInfo.isSymbolicLink()) {
+    issues.push(`${relative(repo, targetSkill)}: missing mirrored skill directory`)
+    return issues
+  }
+
+  const targetTree = await collectTree(targetSkill)
+  for (const [file, source] of sourceTree.files) {
+    const destination = targetTree.files.get(file)
+    const label = relative(repo, path.join(targetSkill, file))
+    if (destination === undefined || destination.kind !== 'file') {
+      issues.push(`${label}: missing mirrored file`)
+      continue
+    }
+
+    const [sourceBytes, targetBytes] = await Promise.all([
+      readFile(source.absolute),
+      readFile(destination.absolute),
+    ])
+    if (!sourceBytes.equals(targetBytes)) issues.push(`${label}: bytes differ`)
+    if ((source.info.mode & 0o111) !== (destination.info.mode & 0o111)) {
+      issues.push(`${label}: executable bits differ`)
+    }
+  }
+
+  for (const [file] of targetTree.files) {
+    const label = relative(repo, path.join(targetSkill, file))
+    if (!sourceTree.files.has(file) && trackedAssets.has(label)) {
+      issues.push(`${label}: extra tracked mirrored file; migrate to ${canonicalPathForMirror(label)}`)
+    }
+  }
+  for (const directory of targetTree.directories) {
+    const label = relative(repo, path.join(targetSkill, directory))
+    if (!sourceTree.directories.has(directory) && hasTrackedPath(trackedAssets, label)) {
+      issues.push(`${label}: extra tracked mirrored directory; migrate to ${canonicalPathForMirror(label)}`)
+    }
+  }
+
+  return issues
+}
+
+async function audit(repo) {
+  const { sharedSkillRoot, sharedInstructions } = await assertSafeRepoLayout(repo)
+  const externalGeneratedInstructions =
+    !sharedInstructions && (await usesExternalGeneratedInstructions(repo))
+  const agents = path.join(repo, 'AGENTS.md')
+  const agentsInfo = await inspect(agents)
+  if (agentsInfo !== null && !sharedInstructions && (!agentsInfo.isFile() || agentsInfo.isSymbolicLink())) {
+    throw new Error('AGENTS.md must be a regular file')
+  }
+  const agentsContents = agentsInfo === null ? '' : await readFile(agents, 'utf8')
+
+  const skills = sharedSkillRoot ? await sharedRootSkills(repo) : await discoverSkills(repo)
+  const trackedAssets = sharedSkillRoot ? new Set() : trackedSkillAssets(repo)
+  const targetRoot = path.join(repo, '.claude', 'skills')
+  const manifest = sharedSkillRoot
+    ? { exists: false, files: new Map(), canonical: true }
+    : await loadOwnershipManifest(repo)
+  const issues = [
+    ...(sharedSkillRoot ? [] : await auditIgnoredSkills(repo)),
+    ...(await auditRuleRouting(repo, agentsContents)),
+    ...(sharedSkillRoot ? [] : await auditOwnershipManifest(repo, skills, targetRoot, manifest)),
+  ]
+  const claude = path.join(repo, 'CLAUDE.md')
+  const claudeInfo = await inspect(claude)
+  if (!sharedInstructions && !externalGeneratedInstructions) {
+    if (agentsInfo === null && claudeInfo !== null) {
+      issues.push('AGENTS.md: missing; migrate the existing CLAUDE.md instructions')
+    } else if (agentsInfo !== null && claudeInfo === null) {
+      issues.push('CLAUDE.md: missing; expected exactly @AGENTS.md')
+    } else if (agentsInfo !== null && (await readFile(claude, 'utf8')) !== CLAUDE_IMPORT) {
+      issues.push('CLAUDE.md: content differs; expected exactly @AGENTS.md')
+    }
+  }
+
+  if (!sharedSkillRoot) {
+    for (const skill of skills) {
+      issues.push(...(await compareSkill(repo, skill.name, skill.sourceRoot, targetRoot, trackedAssets)))
+    }
+    const canonicalNames = new Set(skills.map(skill => skill.name))
+    for (const asset of await trackedMirrorOnlyAssets(repo, canonicalNames, trackedAssets)) {
+      issues.push(
+        `${asset.relative}: tracked mirror-only asset has no canonical source; migrate to ${canonicalPathForMirror(asset.relative)}`,
+      )
+    }
+  }
+  return { issues, skills }
+}
+
+function isTrivialClaude(contents) {
+  const meaningful = contents
+    .split(/\r?\n/)
+    .map(line => line.trim())
+    .filter(Boolean)
+  return meaningful.length === 0 || (meaningful.length === 1 && meaningful[0] === '@AGENTS.md')
+}
+
+async function atomicCopy(source, destination, mode) {
+  await mkdir(path.dirname(destination), { recursive: true })
+  const temporary = `${destination}.pilot-sync-${process.pid}-${Math.random().toString(16).slice(2)}`
+  try {
+    await copyFile(source, temporary, fsConstants.COPYFILE_FICLONE)
+    await chmod(temporary, mode & 0o777)
+    await rename(temporary, destination)
+  } finally {
+    try {
+      await unlink(temporary)
+    } catch (error) {
+      if (error?.code !== 'ENOENT') throw error
+    }
+  }
+}
+
+async function atomicWriteText(destination, contents, mode) {
+  await mkdir(path.dirname(destination), { recursive: true })
+  const temporary = `${destination}.pilot-sync-${process.pid}-${Math.random().toString(16).slice(2)}`
+  try {
+    await writeFile(temporary, contents, 'utf8')
+    await chmod(temporary, mode)
+    await rename(temporary, destination)
+  } finally {
+    try {
+      await unlink(temporary)
+    } catch (error) {
+      if (error?.code !== 'ENOENT') throw error
+    }
+  }
+}
+
+async function filesMatch(source, target) {
+  if (target.kind !== 'file') return false
+  const [sourceBytes, targetBytes] = await Promise.all([readFile(source.absolute), readFile(target.absolute)])
+  return sourceBytes.equals(targetBytes) && (source.info.mode & 0o111) === (target.info.mode & 0o111)
+}
+
+async function sourceAssetInventory(skills) {
+  const files = new Map()
+  const directories = new Set()
+  for (const { name, sourceRoot } of skills) {
+    directories.add(name)
+    const tree = await collectTree(path.join(sourceRoot, name), { rejectSymlinks: true })
+    for (const directory of tree.directories) directories.add(`${name}/${directory}`)
+    for (const [file, asset] of tree.files) {
+      files.set(`${name}/${file}`, { asset, record: await assetRecord(asset) })
+    }
+  }
+  return { files, directories }
+}
+
+async function targetAssetInventory(targetRoot) {
+  const info = await inspect(targetRoot)
+  if (info === null) return { files: new Map(), directories: new Set() }
+  if (!info.isDirectory() || info.isSymbolicLink()) {
+    throw new Error('.claude/skills must be a regular directory')
+  }
+  const tree = await collectTree(targetRoot)
+  tree.files.delete(OWNERSHIP_MANIFEST)
+  return tree
+}
+
+async function auditOwnershipManifest(repo, skills, targetRoot, manifest) {
+  const issues = []
+  if (!manifest.exists) {
+    if (skills.length === 0) return issues
+    issues.push(`${OWNERSHIP_MANIFEST_PATH}: ownership baseline is missing; run --write to claim an exact legacy mirror`)
+    return issues
+  }
+  if (!manifest.canonical) {
+    issues.push(`${OWNERSHIP_MANIFEST_PATH}: manifest bytes are not deterministic; run --write to normalize it`)
+  }
+
+  const [source, target] = await Promise.all([
+    sourceAssetInventory(skills),
+    targetAssetInventory(targetRoot),
+  ])
+  for (const [assetPath, sourceEntry] of source.files) {
+    const baseline = manifest.files.get(assetPath)
+    if (baseline === undefined) {
+      issues.push(`${OWNERSHIP_MANIFEST_PATH}: missing managed file record for ${assetPath}`)
+      continue
+    }
+    if (!recordsEqual(sourceEntry.record, baseline)) {
+      issues.push(`${OWNERSHIP_MANIFEST_PATH}: canonical asset diverges from baseline: ${assetPath}`)
+    }
+    const targetAsset = target.files.get(assetPath)
+    const targetRecord = await assetRecord(targetAsset)
+    if (targetAsset !== undefined && !recordsEqual(targetRecord, baseline)) {
+      issues.push(`${OWNERSHIP_MANIFEST_PATH}: mirrored asset diverges from baseline: ${assetPath}`)
+    }
+  }
+  for (const assetPath of manifest.files.keys()) {
+    if (!source.files.has(assetPath)) {
+      if (isIgnoredCanonicalAsset(repo, assetPath)) continue
+      issues.push(`${OWNERSHIP_MANIFEST_PATH}: stale managed file record: ${assetPath}`)
+    }
+  }
+  return issues
+}
+
+async function writeOwnershipManifest(repo, skills) {
+  const source = await sourceAssetInventory(skills)
+  const files = new Map([...source.files].map(([assetPath, entry]) => [assetPath, entry.record]))
+  const manifestPath = path.join(repo, ...OWNERSHIP_MANIFEST_PATH.split('/'))
+  await atomicWriteText(manifestPath, serializeOwnershipManifest(files), 0o644)
+}
+
+async function writeLocalProvenance(repo, skills) {
+  const provenancePath = localProvenancePath(repo)
+  if (provenancePath === null) return
+  const source = await sourceAssetInventory(skills)
+  const files = new Map([...source.files].map(([assetPath, entry]) => [assetPath, entry.record]))
+  await atomicWriteText(provenancePath, serializeOwnershipManifest(files), 0o600)
+}
+
+function localConflict(label) {
+  return `${label}: untracked or ignored Claude skill conflicts with the canonical source; migrate or remove the local asset before syncing`
+}
+
+function divergentConflict(label) {
+  return `${label}: canonical and mirrored assets do not have a safe ownership direction; preserve the mirror, migrate the intended content, then retry`
+}
+
+function trackedExtraConflict(label) {
+  return `${label}: tracked Claude-only asset has no ownership baseline; migrate to ${canonicalPathForMirror(label)} or rerun with --force-migration after preserving intended content`
+}
+
+function mutationBaseline(assetPath, tracked, manifest, localProvenance) {
+  return (tracked ? manifest.files : localProvenance.files).get(assetPath)
+}
+
+function hasMutationBaseline(assetPath, tracked, manifest, localProvenance) {
+  return hasManifestPath(tracked ? manifest.files : localProvenance.files, assetPath)
+}
+
+function replacementDecision(sourceRecord, targetRecord, baseline, tracked) {
+  if (recordsEqual(sourceRecord, targetRecord)) return 'same'
+  if (baseline !== undefined) {
+    const sourceMatches = recordsEqual(sourceRecord, baseline)
+    const targetMatches = recordsEqual(targetRecord, baseline)
+    if (!sourceMatches && targetMatches) return 'replace'
+    if (sourceMatches && !targetMatches) return 'reverse'
+    return 'conflict'
+  }
+  return 'conflict'
+}
+
+function staleRemovalDecision(targetRecord, baseline, tracked) {
+  if (baseline !== undefined) return recordsEqual(targetRecord, baseline) ? 'remove' : 'conflict'
+  return tracked ? 'remove' : 'preserve'
+}
+
+async function findUntrackedSkillConflicts(
+  repo,
+  skills,
+  targetRoot,
+  trackedAssets,
+  manifest,
+  localProvenance,
+  forceMigration,
+) {
+  const conflicts = []
+  for (const { name, sourceRoot } of skills) {
+    const sourceSkill = path.join(sourceRoot, name)
+    const targetSkill = path.join(targetRoot, name)
+    const targetLabel = relative(repo, targetSkill)
+    const targetInfo = await inspect(targetSkill)
+    if (targetInfo === null) continue
+    if (!targetInfo.isDirectory() || targetInfo.isSymbolicLink()) {
+      const tracked = trackedAssets.has(targetLabel)
+      if (hasMutationBaseline(name, tracked, manifest, localProvenance)) {
+        conflicts.push(divergentConflict(targetLabel))
+      } else if (!tracked) {
+        conflicts.push(localConflict(targetLabel))
+      }
+      continue
+    }
+
+    const [sourceTree, targetTree] = await Promise.all([
+      collectTree(sourceSkill, { rejectSymlinks: true }),
+      collectTree(targetSkill),
+    ])
+    for (const [file, target] of targetTree.files) {
+      const label = relative(repo, path.join(targetSkill, file))
+      const source = sourceTree.files.get(file)
+      const assetPath = `${name}/${file}`
+      const tracked = trackedAssets.has(label)
+      const baseline = mutationBaseline(assetPath, tracked, manifest, localProvenance)
+      const targetRecord = await assetRecord(target)
+      if (source !== undefined) {
+        const sourceRecord = await assetRecord(source)
+        if (replacementDecision(sourceRecord, targetRecord, baseline, tracked) === 'conflict') {
+          conflicts.push(baseline === undefined ? localConflict(label) : divergentConflict(label))
+        }
+      } else if (sourceTree.directories.has(file)) {
+        if (baseline === undefined && tracked && !forceMigration) {
+          conflicts.push(trackedExtraConflict(label))
+          continue
+        }
+        const decision = staleRemovalDecision(targetRecord, baseline, tracked)
+        if (decision !== 'remove') {
+          conflicts.push(decision === 'preserve' ? localConflict(label) : divergentConflict(label))
+        }
+      } else if (baseline !== undefined && staleRemovalDecision(targetRecord, baseline, false) === 'conflict') {
+        conflicts.push(divergentConflict(label))
+      }
+    }
+
+    for (const file of sourceTree.files.keys()) {
+      if (!targetTree.directories.has(file)) continue
+      const label = relative(repo, path.join(targetSkill, file))
+      const prefix = `${file}/`
+      const descendants = [...targetTree.files.keys()].filter(target => target.startsWith(prefix))
+      const fullyOwned =
+        descendants.length > 0 &&
+        (
+          await Promise.all(
+            descendants.map(async target => {
+              const descendantLabel = relative(repo, path.join(targetSkill, target))
+              const tracked = trackedAssets.has(descendantLabel)
+              const baseline = mutationBaseline(`${name}/${target}`, tracked, manifest, localProvenance)
+              const targetRecord = await assetRecord(targetTree.files.get(target))
+              return staleRemovalDecision(targetRecord, baseline, tracked) === 'remove'
+            }),
+          )
+        ).every(Boolean)
+      if (!fullyOwned) conflicts.push(divergentConflict(label))
+    }
+  }
+  return [...new Set(conflicts)].sort()
+}
+
+async function findStaleManifestConflicts(
+  repo,
+  skills,
+  targetRoot,
+  trackedAssets,
+  manifest,
+  localProvenance,
+) {
+  const [source, target] = await Promise.all([
+    sourceAssetInventory(skills),
+    targetAssetInventory(targetRoot),
+  ])
+  const conflicts = []
+  const candidates = new Set([...manifest.files.keys(), ...localProvenance.files.keys()])
+  for (const assetPath of candidates) {
+    if (source.files.has(assetPath)) continue
+    if (isIgnoredCanonicalAsset(repo, assetPath)) continue
+    const targetAsset = target.files.get(assetPath)
+    if (targetAsset !== undefined) {
+      const label = relative(repo, path.join(targetRoot, ...assetPath.split('/')))
+      const baseline = mutationBaseline(assetPath, trackedAssets.has(label), manifest, localProvenance)
+      if (baseline !== undefined && !recordsEqual(await assetRecord(targetAsset), baseline)) {
+        conflicts.push(divergentConflict(label))
+      }
+    }
+  }
+  return conflicts
+}
+
+async function removeStaleManifestAssets(repo, skills, targetRoot, trackedAssets, manifest, localProvenance) {
+  const [source, target] = await Promise.all([
+    sourceAssetInventory(skills),
+    targetAssetInventory(targetRoot),
+  ])
+  const removed = []
+  const candidates = new Set([...manifest.files.keys(), ...localProvenance.files.keys()])
+  for (const assetPath of candidates) {
+    if (source.files.has(assetPath)) continue
+    if (isIgnoredCanonicalAsset(repo, assetPath)) continue
+    const targetAsset = target.files.get(assetPath)
+    if (targetAsset !== undefined) {
+      const label = relative(repo, path.join(targetRoot, ...assetPath.split('/')))
+      const baseline = mutationBaseline(assetPath, trackedAssets.has(label), manifest, localProvenance)
+      if (baseline !== undefined && recordsEqual(await assetRecord(targetAsset), baseline)) {
+        await unlink(targetAsset.absolute)
+        removed.push(targetAsset.absolute)
+      }
+    }
+  }
+
+  const parents = new Set()
+  for (const removedAsset of removed) {
+    let parent = path.dirname(removedAsset)
+    while (parent.startsWith(`${targetRoot}${path.sep}`)) {
+      parents.add(parent)
+      parent = path.dirname(parent)
+    }
+  }
+  for (const parent of [...parents].sort((left, right) => right.length - left.length)) {
+    try {
+      await rmdir(parent)
+    } catch (error) {
+      if (error?.code !== 'ENOENT' && error?.code !== 'ENOTEMPTY' && error?.code !== 'EEXIST') throw error
+    }
+  }
+}
+
+async function syncSkill(repo, name, sourceRoot, targetRoot, trackedAssets, manifest, localProvenance) {
+  const sourceSkill = path.join(sourceRoot, name)
+  const targetSkill = path.join(targetRoot, name)
+  const targetLabel = relative(repo, targetSkill)
+  const targetInfo = await inspect(targetSkill)
+  if (targetInfo !== null && (!targetInfo.isDirectory() || targetInfo.isSymbolicLink())) {
+    const tracked = trackedAssets.has(targetLabel)
+    if (hasMutationBaseline(name, tracked, manifest, localProvenance)) {
+      throw new Error(divergentConflict(targetLabel))
+    }
+    if (!tracked) throw new Error(localConflict(targetLabel))
+    await unlink(targetSkill)
+  }
+  await mkdir(targetSkill, { recursive: true })
+
+  const sourceTree = await collectTree(sourceSkill, { rejectSymlinks: true })
+  const targetTree = await collectTree(targetSkill)
+
+  for (const [file, target] of targetTree.files) {
+    const label = relative(repo, path.join(targetSkill, file))
+    const source = sourceTree.files.get(file)
+    const assetPath = `${name}/${file}`
+    const tracked = trackedAssets.has(label)
+    const baseline = mutationBaseline(assetPath, tracked, manifest, localProvenance)
+    const targetRecord = await assetRecord(target)
+    let remove = false
+    if (source !== undefined) {
+      const sourceRecord = await assetRecord(source)
+      const decision = replacementDecision(sourceRecord, targetRecord, baseline, tracked)
+      if (decision === 'reverse') {
+        await atomicCopy(target.absolute, source.absolute, target.info.mode)
+      }
+      remove = decision === 'replace'
+    } else {
+      if (baseline === undefined) {
+        await atomicCopy(target.absolute, path.join(sourceSkill, file), target.info.mode)
+      } else {
+        remove = staleRemovalDecision(targetRecord, baseline, tracked) === 'remove'
+      }
+    }
+    if (remove) {
+      await unlink(target.absolute)
+    }
+  }
+
+  for (const [file, source] of sourceTree.files) {
+    const destination = path.join(targetSkill, file)
+    const destinationInfo = await inspect(destination)
+    if (destinationInfo?.isDirectory() && !destinationInfo.isSymbolicLink()) {
+      await rmdir(destination)
+    } else if (destinationInfo?.isSymbolicLink()) {
+      throw new Error(localConflict(relative(repo, destination)))
+    } else if (destinationInfo?.isFile()) {
+      const target = { absolute: destination, info: destinationInfo, kind: 'file' }
+      if (await filesMatch(source, target)) continue
+    }
+    await atomicCopy(source.absolute, destination, source.info.mode)
+  }
+
+  const currentTree = await collectTree(targetSkill)
+  const extraDirectories = [...currentTree.directories]
+    .filter(directory => {
+      const label = relative(repo, path.join(targetSkill, directory))
+      const tracked = hasTrackedPath(trackedAssets, label)
+      return (
+        !sourceTree.directories.has(directory) &&
+        (tracked ||
+          hasManifestPath(
+            tracked ? manifest.files : localProvenance.files,
+            `${name}/${directory}`,
+          ))
+      )
+    })
+    .sort((left, right) => right.split('/').length - left.split('/').length || right.localeCompare(left))
+  for (const directory of extraDirectories) {
+    try {
+      await rmdir(path.join(targetSkill, directory))
+    } catch (error) {
+      if (error?.code !== 'ENOENT' && error?.code !== 'ENOTEMPTY' && error?.code !== 'EEXIST') throw error
+    }
+  }
+}
+
+async function removeTrackedMirrorOnlyAssets(repo, canonicalNames, targetRoot, trackedAssets) {
+  const assets = await trackedMirrorOnlyAssets(repo, canonicalNames, trackedAssets)
+  for (const asset of assets) {
+    const info = await inspect(asset.absolute)
+    if (info !== null && (!info.isDirectory() || info.isSymbolicLink())) await unlink(asset.absolute)
+  }
+
+  const parents = new Set()
+  for (const asset of assets) {
+    let parent = path.dirname(asset.absolute)
+    while (parent.startsWith(`${targetRoot}${path.sep}`)) {
+      parents.add(parent)
+      parent = path.dirname(parent)
+    }
+  }
+  for (const parent of [...parents].sort((left, right) => right.length - left.length)) {
+    try {
+      await rmdir(parent)
+    } catch (error) {
+      if (error?.code !== 'ENOENT' && error?.code !== 'ENOTEMPTY' && error?.code !== 'EEXIST') throw error
+    }
+  }
+}
+
+async function write(repo, { forceMigration = false } = {}) {
+  const { sharedSkillRoot, sharedInstructions } = await assertSafeRepoLayout(repo)
+  const externalGeneratedInstructions =
+    !sharedInstructions && (await usesExternalGeneratedInstructions(repo))
+  // Validate both managed and local skill inputs before the first write so an
+  // invalid skill cannot leave a partially migrated root contract behind.
+  if (!sharedSkillRoot) {
+    await discoverSkills(repo)
+    await validatePairedMirrorSkills(repo)
+    await planIgnoredSkillSync(repo)
+  }
+  if (!sharedInstructions && !externalGeneratedInstructions) {
+    await synchronizeRootInstructions(repo)
+  }
+  const agents = path.join(repo, 'AGENTS.md')
+  const agentsInfo = await inspect(agents)
+  if (agentsInfo !== null && !sharedInstructions && (!agentsInfo.isFile() || agentsInfo.isSymbolicLink())) {
+    throw new Error('AGENTS.md must be a regular file')
+  }
+  const agentsContents = agentsInfo === null ? '' : await readFile(agents, 'utf8')
+  const routingIssues = await auditRuleRouting(repo, agentsContents)
+  if (routingIssues.length > 0) {
+    throw new Error(`rule routing parity failed:\n${routingIssues.map(issue => `- ${issue}`).join('\n')}`)
+  }
+
+  if (sharedSkillRoot) {
+    const result = await audit(repo)
+    if (result.issues.length > 0) {
+      throw new Error(`synchronization did not converge:\n${result.issues.map(issue => `- ${issue}`).join('\n')}`)
+    }
+    return result.skills.length
+  }
+
+  await mkdir(path.join(repo, '.agents', 'skills'), { recursive: true })
+  await mkdir(path.join(repo, '.claude', 'skills'), { recursive: true })
+  await synchronizeIgnoredSkills(repo)
+
+  const skills = await discoverSkills(repo)
+  const trackedAssets = trackedSkillAssets(repo)
+  const targetRoot = path.join(repo, '.claude', 'skills')
+  const manifest = await loadOwnershipManifest(repo)
+  const localProvenance = await loadLocalProvenance(repo)
+  const canonicalNames = new Set(skills.map(skill => skill.name))
+  const mirrorOnlyAssets = await trackedMirrorOnlyAssets(repo, canonicalNames, trackedAssets)
+  if (mirrorOnlyAssets.length > 0 && !forceMigration) {
+    throw new Error(
+      `tracked Claude-only skill requires explicit migration; preserved:\n${mirrorOnlyAssets.map(asset => `- ${asset.relative} -> ${canonicalPathForMirror(asset.relative)}`).join('\n')}\nRerun with --force-migration only after preserving any intended content.`,
+    )
+  }
+  const localConflicts = [
+    ...(await findUntrackedSkillConflicts(
+      repo,
+      skills,
+      targetRoot,
+      trackedAssets,
+      manifest,
+      localProvenance,
+      forceMigration,
+    )),
+    ...(await findStaleManifestConflicts(
+      repo,
+      skills,
+      targetRoot,
+      trackedAssets,
+      manifest,
+      localProvenance,
+    )),
+  ]
+  if (localConflicts.length > 0) {
+    throw new Error(`local Claude skill migration required:\n${localConflicts.map(issue => `- ${issue}`).join('\n')}`)
+  }
+  const claude = path.join(repo, 'CLAUDE.md')
+  if (agentsInfo !== null && (await inspect(claude)) === null) {
+    await atomicWriteText(claude, CLAUDE_IMPORT, 0o644)
+  }
+  await mkdir(targetRoot, { recursive: true })
+  for (const skill of skills) {
+    await syncSkill(
+      repo,
+      skill.name,
+      skill.sourceRoot,
+      targetRoot,
+      trackedAssets,
+      manifest,
+      localProvenance,
+    )
+  }
+  await removeStaleManifestAssets(
+    repo,
+    skills,
+    targetRoot,
+    trackedAssets,
+    manifest,
+    localProvenance,
+  )
+  if (forceMigration) {
+    await removeTrackedMirrorOnlyAssets(repo, canonicalNames, targetRoot, trackedAssets)
+  }
+  await writeOwnershipManifest(repo, skills)
+  await writeLocalProvenance(repo, skills)
+
+  const result = await audit(repo)
+  if (result.issues.length > 0) {
+    throw new Error(`synchronization did not converge:\n${result.issues.map(issue => `- ${issue}`).join('\n')}`)
+  }
+  return skills.length
+}
+
+async function install(repo) {
+  await assertSafeRepoLayout(repo, { includeInstallerDestination: true })
+  const source = fileURLToPath(import.meta.url)
+  const destination = path.join(repo, INSTALLED_PATH)
+  const repoInfo = await inspect(repo)
+  if (repoInfo === null || !repoInfo.isDirectory()) throw new Error(`repository path does not exist: ${repo}`)
+
+  if (path.resolve(source) !== path.resolve(destination)) {
+    await atomicCopy(source, destination, 0o755)
+  } else {
+    await chmod(destination, 0o755)
+  }
+  return destination
+}
+
+function shellQuote(value) {
+  if (/^[A-Za-z0-9_./:=+-]+$/.test(value)) return value
+  return `'${value.replaceAll("'", "'\\''")}'`
+}
+
+function modeCommand(mode, repo) {
+  return [
+    shellQuote(process.execPath),
+    shellQuote(fileURLToPath(import.meta.url)),
+    `--${mode}`,
+    '--repo',
+    shellQuote(repo),
+  ].join(' ')
+}
+
+async function main() {
+  let options
+  try {
+    options = parseArgs(process.argv.slice(2))
+  } catch (error) {
+    if (!(error instanceof UsageError)) throw error
+    console.error(`Error: ${error.message}\n\n${usage()}`)
+    process.exitCode = 2
+    return
+  }
+
+  if (options.help) {
+    console.log(usage())
+    return
+  }
+
+  if (options.mode === 'install') {
+    const count = await write(options.repo, { forceMigration: options.forceMigration })
+    const destination = await install(options.repo)
+    console.log(`Installed ${relative(options.repo, destination)}`)
+    console.log(`Synchronized CLAUDE.md and ${count} skill${count === 1 ? '' : 's'}.`)
+    console.log(`Check: node ${INSTALLED_PATH.split(path.sep).join('/')} --check`)
+    return
+  }
+
+  if (options.mode === 'write') {
+    const count = await write(options.repo, { forceMigration: options.forceMigration })
+    console.log(`Synchronized CLAUDE.md and ${count} skill${count === 1 ? '' : 's'}.`)
+    return
+  }
+
+  const { issues, skills } = await audit(options.repo)
+  if (issues.length === 0) {
+    console.log(`Agent assets are synchronized (${skills.length} skill${skills.length === 1 ? '' : 's'}).`)
+    return
+  }
+
+  console.error('Agent asset drift detected:')
+  for (const issue of issues) console.error(`- ${issue}`)
+  if (issues.some(issue => issue.startsWith('AGENTS.md '))) {
+    console.error(`Verify after correcting AGENTS.md: ${modeCommand('check', options.repo)}`)
+  } else {
+    console.error(`Recovery: ${modeCommand('write', options.repo)}`)
+  }
+  process.exitCode = 1
+}
+
+main().catch(error => {
+  console.error(`Error: ${error.message}`)
+  process.exitCode = 1
+})