@mat3ra/wode 2026.4.9-0 → 2026.5.29-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (361) hide show
  1. package/.babelrc +1 -1
  2. package/dist/js/Subworkflow.d.ts +714 -0
  3. package/dist/js/Subworkflow.js +397 -0
  4. package/dist/js/Workflow.d.ts +82 -0
  5. package/dist/js/Workflow.js +286 -0
  6. package/dist/js/WorkflowDesignerMaterial.d.ts +21 -0
  7. package/dist/js/WorkflowDesignerMaterial.js +26 -0
  8. package/dist/js/context/mixins/ApplicationContextMixin.d.ts +10 -0
  9. package/dist/js/context/mixins/ApplicationContextMixin.js +10 -17
  10. package/dist/js/context/mixins/MaterialContextMixin.d.ts +18 -0
  11. package/dist/js/context/mixins/MaterialContextMixin.js +14 -38
  12. package/dist/js/context/mixins/MaterialsContextMixin.d.ts +10 -0
  13. package/dist/js/context/mixins/MaterialsContextMixin.js +11 -17
  14. package/dist/js/context/mixins/MaterialsSetContextMixin.d.ts +14 -0
  15. package/dist/js/context/mixins/MaterialsSetContextMixin.js +21 -23
  16. package/dist/js/context/providers/BoundaryConditionsFormDataManager.d.ts +30 -0
  17. package/dist/js/context/providers/BoundaryConditionsFormDataManager.js +62 -0
  18. package/dist/js/context/providers/CollinearMagnetizationDataManager.d.ts +42 -0
  19. package/dist/js/context/providers/CollinearMagnetizationDataManager.js +101 -0
  20. package/dist/js/context/providers/Hubbard/HubbardContextManagerLegacy.d.ts +29 -0
  21. package/dist/js/context/providers/Hubbard/HubbardContextManagerLegacy.js +69 -0
  22. package/dist/js/context/providers/Hubbard/HubbardContextProvider.d.ts +20 -0
  23. package/dist/js/context/providers/Hubbard/HubbardContextProvider.js +47 -0
  24. package/dist/js/context/providers/Hubbard/HubbardJContextManager.d.ts +22 -0
  25. package/dist/js/context/providers/Hubbard/HubbardJContextManager.js +61 -0
  26. package/dist/js/context/providers/Hubbard/HubbardUContextManager.d.ts +22 -0
  27. package/dist/js/context/providers/Hubbard/HubbardUContextManager.js +57 -0
  28. package/dist/js/context/providers/Hubbard/HubbardVContextManager.d.ts +22 -0
  29. package/dist/js/context/providers/Hubbard/HubbardVContextManager.js +79 -0
  30. package/dist/js/context/providers/IonDynamicsDataManager.d.ts +27 -0
  31. package/dist/js/context/providers/IonDynamicsDataManager.js +48 -0
  32. package/dist/js/context/providers/MLSettingsDataManager.d.ts +24 -0
  33. package/dist/js/context/providers/MLSettingsDataManager.js +42 -0
  34. package/dist/js/context/providers/MLTrainTestSplitDataManager.d.ts +23 -0
  35. package/dist/js/context/providers/MLTrainTestSplitDataManager.js +40 -0
  36. package/dist/js/context/providers/NEBFormDataManager.d.ts +23 -0
  37. package/dist/js/context/providers/NEBFormDataManager.js +39 -0
  38. package/dist/js/context/providers/NonCollinearMagnetizationDataManager.d.ts +78 -0
  39. package/dist/js/context/providers/NonCollinearMagnetizationDataManager.js +181 -0
  40. package/dist/js/context/providers/PlanewaveCutoffDataManager.d.ts +26 -0
  41. package/dist/js/context/providers/PlanewaveCutoffDataManager.js +69 -0
  42. package/dist/js/context/providers/PointsGrid/IGridFormDataManager.d.ts +13 -0
  43. package/dist/js/context/providers/PointsGrid/IGridFormDataManager.js +23 -0
  44. package/dist/js/context/providers/PointsGrid/KGridFormDataManager.d.ts +15 -0
  45. package/dist/js/context/providers/PointsGrid/KGridFormDataManager.js +30 -0
  46. package/dist/js/context/providers/PointsGrid/PointsGridFormDataProvider.d.ts +171 -0
  47. package/dist/js/context/providers/PointsGrid/PointsGridFormDataProvider.js +270 -0
  48. package/dist/js/context/providers/PointsGrid/QGridFormDataManager.d.ts +13 -0
  49. package/dist/js/context/providers/PointsGrid/QGridFormDataManager.js +23 -0
  50. package/dist/js/context/providers/PointsPath/ExplicitKPath2PIBAFormDataManager.d.ts +10 -0
  51. package/dist/js/context/providers/PointsPath/ExplicitKPath2PIBAFormDataManager.js +19 -0
  52. package/dist/js/context/providers/PointsPath/ExplicitKPathFormDataManager.d.ts +9 -0
  53. package/dist/js/context/providers/PointsPath/ExplicitKPathFormDataManager.js +18 -0
  54. package/dist/js/context/providers/PointsPath/IPathFormDataManager.d.ts +8 -0
  55. package/dist/js/context/providers/PointsPath/IPathFormDataManager.js +17 -0
  56. package/dist/js/context/providers/PointsPath/KPathFormDataManager.d.ts +8 -0
  57. package/dist/js/context/providers/PointsPath/KPathFormDataManager.js +17 -0
  58. package/dist/js/context/providers/PointsPath/PointsPathFormDataProvider.d.ts +40 -0
  59. package/dist/js/context/providers/PointsPath/PointsPathFormDataProvider.js +125 -0
  60. package/dist/js/context/providers/PointsPath/QPathFormDataManager.d.ts +8 -0
  61. package/dist/js/context/providers/PointsPath/QPathFormDataManager.js +17 -0
  62. package/dist/js/context/providers/base/ContextProvider.d.ts +75 -0
  63. package/dist/js/context/providers/base/ContextProvider.js +87 -0
  64. package/dist/js/context/providers/base/JSONSchemaDataProvider.d.ts +16 -0
  65. package/dist/js/context/providers/base/JSONSchemaDataProvider.js +17 -0
  66. package/dist/js/context/providers/base/JSONSchemaFormDataProvider.d.ts +19 -0
  67. package/dist/js/context/providers/base/JSONSchemaFormDataProvider.js +32 -0
  68. package/dist/js/context/providers/by_application/espresso/QENEBInputDataManager.d.ts +26 -0
  69. package/dist/js/context/providers/by_application/espresso/QENEBInputDataManager.js +54 -0
  70. package/dist/js/context/providers/by_application/espresso/QEPWXInputDataManager.d.ts +78 -0
  71. package/dist/js/context/providers/by_application/espresso/QEPWXInputDataManager.js +104 -0
  72. package/dist/js/context/providers/by_application/nwchem/NWChemInputDataManager.d.ts +36 -0
  73. package/dist/js/context/providers/by_application/nwchem/NWChemInputDataManager.js +58 -0
  74. package/dist/js/context/providers/by_application/vasp/VASPInputDataManager.d.ts +36 -0
  75. package/dist/js/context/providers/by_application/vasp/VASPInputDataManager.js +56 -0
  76. package/dist/js/context/providers/by_application/vasp/VASPNEBInputDataManager.d.ts +30 -0
  77. package/dist/js/context/providers/by_application/vasp/VASPNEBInputDataManager.js +50 -0
  78. package/dist/js/context/providers/index.d.ts +92 -0
  79. package/dist/js/context/providers/index.js +107 -0
  80. package/dist/js/context/providers/settings.d.ts +7 -0
  81. package/dist/js/context/providers/settings.js +11 -33
  82. package/dist/js/convergence/ConvergenceParameter.d.ts +26 -0
  83. package/dist/js/convergence/ConvergenceParameter.js +13 -0
  84. package/dist/js/convergence/NonUniformKGridConvergence.d.ts +12 -0
  85. package/dist/js/convergence/NonUniformKGridConvergence.js +31 -0
  86. package/dist/js/convergence/UniformKGridConvergence.d.ts +8 -0
  87. package/dist/js/convergence/UniformKGridConvergence.js +22 -0
  88. package/dist/js/convergence/factory.d.ts +8 -0
  89. package/dist/js/convergence/factory.js +18 -0
  90. package/dist/js/enums.d.ts +62 -0
  91. package/dist/js/enums.js +66 -61
  92. package/dist/js/generated/AssertionUnitSchemaMixin.d.ts +5 -0
  93. package/dist/js/generated/AssertionUnitSchemaMixin.js +27 -0
  94. package/dist/js/generated/AssignmentUnitSchemaMixin.d.ts +5 -0
  95. package/dist/js/generated/AssignmentUnitSchemaMixin.js +33 -0
  96. package/dist/js/generated/BaseUnitSchemaMixin.d.ts +5 -0
  97. package/dist/js/generated/BaseUnitSchemaMixin.js +57 -0
  98. package/dist/js/generated/ConditionUnitSchemaMixin.d.ts +5 -0
  99. package/dist/js/generated/ConditionUnitSchemaMixin.js +51 -0
  100. package/dist/js/generated/ExecutionUnitInputSchemaMixin.d.ts +5 -0
  101. package/dist/js/generated/ExecutionUnitInputSchemaMixin.js +27 -0
  102. package/dist/js/generated/ExecutionUnitSchemaMixin.d.ts +5 -0
  103. package/dist/js/generated/ExecutionUnitSchemaMixin.js +45 -0
  104. package/dist/js/generated/IOUnitSchemaMixin.d.ts +5 -0
  105. package/dist/js/generated/IOUnitSchemaMixin.js +33 -0
  106. package/dist/js/generated/MapUnitSchemaMixin.d.ts +5 -0
  107. package/dist/js/generated/MapUnitSchemaMixin.js +27 -0
  108. package/dist/js/generated/ReduceUnitSchemaMixin.d.ts +5 -0
  109. package/dist/js/generated/ReduceUnitSchemaMixin.js +27 -0
  110. package/dist/js/generated/StatusSchemaMixin.d.ts +5 -0
  111. package/dist/js/generated/StatusSchemaMixin.js +21 -0
  112. package/dist/js/generated/SubworkflowSchemaMixin.d.ts +5 -0
  113. package/dist/js/generated/SubworkflowSchemaMixin.js +51 -0
  114. package/dist/js/generated/SubworkflowUnitSchemaMixin.d.ts +5 -0
  115. package/dist/js/generated/SubworkflowUnitSchemaMixin.js +15 -0
  116. package/dist/js/generated/WorkflowSchemaMixin.d.ts +5 -0
  117. package/dist/js/generated/WorkflowSchemaMixin.js +51 -0
  118. package/dist/js/index.d.ts +13 -0
  119. package/dist/js/index.js +66 -176
  120. package/dist/js/units/AssertionUnit.d.ts +20 -0
  121. package/dist/js/units/AssertionUnit.js +33 -0
  122. package/dist/js/units/AssignmentUnit.d.ts +17 -0
  123. package/dist/js/units/AssignmentUnit.js +35 -0
  124. package/dist/js/units/BaseUnit.d.ts +39 -0
  125. package/dist/js/units/BaseUnit.js +70 -0
  126. package/dist/js/units/ConditionUnit.d.ts +17 -0
  127. package/dist/js/units/ConditionUnit.js +37 -0
  128. package/dist/js/units/ExecutionUnit.d.ts +115 -0
  129. package/dist/js/units/ExecutionUnit.js +181 -0
  130. package/dist/js/units/ExecutionUnitInput.d.ts +22 -0
  131. package/dist/js/units/ExecutionUnitInput.js +47 -0
  132. package/dist/js/units/IOUnit.d.ts +16 -0
  133. package/dist/js/units/IOUnit.js +31 -0
  134. package/dist/js/units/MapUnit.d.ts +34 -0
  135. package/dist/js/units/MapUnit.js +46 -0
  136. package/dist/js/units/ReduceUnit.d.ts +16 -0
  137. package/dist/js/units/ReduceUnit.js +30 -0
  138. package/dist/js/units/SubworkflowUnit.d.ts +16 -0
  139. package/dist/js/units/SubworkflowUnit.js +28 -0
  140. package/dist/js/units/factory.d.ts +31 -0
  141. package/dist/js/units/factory.js +65 -47
  142. package/dist/js/units/index.d.ts +14 -0
  143. package/dist/js/units/index.js +25 -81
  144. package/dist/js/units/mixins/RuntimeItemsUILogicMixin.d.ts +26 -0
  145. package/dist/js/units/mixins/RuntimeItemsUILogicMixin.js +50 -0
  146. package/dist/js/utils/baseUnits.d.ts +2 -0
  147. package/dist/js/utils/baseUnits.js +11 -0
  148. package/dist/js/utils/index.d.ts +3 -0
  149. package/dist/js/utils/index.js +39 -0
  150. package/dist/js/utils/subworkflow.d.ts +2 -0
  151. package/dist/js/utils/subworkflow.js +29 -0
  152. package/dist/js/utils/underscoreStringSlugify.d.ts +6 -0
  153. package/dist/js/utils/underscoreStringSlugify.js +32 -0
  154. package/dist/js/utils/units.d.ts +4 -0
  155. package/dist/js/utils/units.js +16 -0
  156. package/dist/js/utils/workflow.d.ts +9 -0
  157. package/dist/js/utils/workflow.js +67 -0
  158. package/dist/js/utils.js +2 -7
  159. package/dist/js/workflows/default.d.ts +3 -0
  160. package/dist/js/workflows/default.js +43 -39
  161. package/dist/js/workflows/workflow.d.ts +4404 -0
  162. package/dist/js/workflows/workflow.js +310 -306
  163. package/package.json +56 -44
  164. package/src/js/Subworkflow.ts +532 -0
  165. package/src/js/Workflow.ts +390 -0
  166. package/src/js/context/mixins/ApplicationContextMixin.ts +21 -0
  167. package/src/js/context/mixins/MaterialContextMixin.ts +35 -0
  168. package/src/js/context/mixins/MaterialsContextMixin.ts +24 -0
  169. package/src/js/context/mixins/MaterialsSetContextMixin.ts +42 -0
  170. package/src/js/context/providers/BoundaryConditionsFormDataManager.ts +88 -0
  171. package/src/js/context/providers/CollinearMagnetizationDataManager.ts +140 -0
  172. package/src/js/context/providers/Hubbard/HubbardContextManagerLegacy.ts +93 -0
  173. package/src/js/context/providers/Hubbard/HubbardContextProvider.ts +85 -0
  174. package/src/js/context/providers/Hubbard/HubbardJContextManager.ts +82 -0
  175. package/src/js/context/providers/Hubbard/HubbardUContextManager.ts +78 -0
  176. package/src/js/context/providers/Hubbard/HubbardVContextManager.ts +100 -0
  177. package/src/js/context/providers/IonDynamicsDataManager.ts +64 -0
  178. package/src/js/context/providers/MLSettingsDataManager.ts +61 -0
  179. package/src/js/context/providers/MLTrainTestSplitDataManager.ts +59 -0
  180. package/src/js/context/providers/NEBFormDataManager.ts +57 -0
  181. package/src/js/context/providers/NonCollinearMagnetizationDataManager.ts +229 -0
  182. package/src/js/context/providers/PlanewaveCutoffDataManager.ts +110 -0
  183. package/src/js/context/providers/PointsGrid/IGridFormDataManager.ts +36 -0
  184. package/src/js/context/providers/PointsGrid/KGridFormDataManager.ts +46 -0
  185. package/src/js/context/providers/PointsGrid/PointsGridFormDataProvider.ts +371 -0
  186. package/src/js/context/providers/PointsGrid/QGridFormDataManager.ts +36 -0
  187. package/src/js/context/providers/PointsPath/ExplicitKPath2PIBAFormDataManager.ts +26 -0
  188. package/src/js/context/providers/PointsPath/ExplicitKPathFormDataManager.ts +24 -0
  189. package/src/js/context/providers/PointsPath/IPathFormDataManager.ts +22 -0
  190. package/src/js/context/providers/PointsPath/KPathFormDataManager.ts +22 -0
  191. package/src/js/context/providers/PointsPath/PointsPathFormDataProvider.ts +192 -0
  192. package/src/js/context/providers/PointsPath/QPathFormDataManager.ts +22 -0
  193. package/src/js/context/providers/base/ContextProvider.ts +150 -0
  194. package/src/js/context/providers/base/JSONSchemaDataProvider.ts +31 -0
  195. package/src/js/context/providers/base/JSONSchemaFormDataProvider.ts +38 -0
  196. package/src/js/context/providers/by_application/espresso/QENEBInputDataManager.ts +107 -0
  197. package/src/js/context/providers/by_application/espresso/QEPWXInputDataManager.ts +178 -0
  198. package/src/js/context/providers/by_application/nwchem/NWChemInputDataManager.ts +93 -0
  199. package/src/js/context/providers/by_application/vasp/VASPInputDataManager.ts +89 -0
  200. package/src/js/context/providers/by_application/vasp/VASPNEBInputDataManager.ts +92 -0
  201. package/src/js/context/providers/index.ts +155 -0
  202. package/src/js/context/providers/settings.ts +13 -0
  203. package/src/js/convergence/ConvergenceParameter.ts +37 -0
  204. package/src/js/convergence/NonUniformKGridConvergence.ts +38 -0
  205. package/src/js/convergence/UniformKGridConvergence.ts +26 -0
  206. package/src/js/convergence/factory.ts +18 -0
  207. package/src/js/{enums.js → enums.ts} +27 -22
  208. package/src/js/generated/AssertionUnitSchemaMixin.ts +34 -0
  209. package/src/js/generated/AssignmentUnitSchemaMixin.ts +40 -0
  210. package/src/js/generated/BaseUnitSchemaMixin.ts +64 -0
  211. package/src/js/generated/ConditionUnitSchemaMixin.ts +58 -0
  212. package/src/js/generated/ExecutionUnitInputSchemaMixin.ts +36 -0
  213. package/src/js/generated/ExecutionUnitSchemaMixin.ts +52 -0
  214. package/src/js/generated/IOUnitSchemaMixin.ts +40 -0
  215. package/src/js/generated/MapUnitSchemaMixin.ts +34 -0
  216. package/src/js/generated/ReduceUnitSchemaMixin.ts +34 -0
  217. package/src/js/generated/StatusSchemaMixin.ts +28 -0
  218. package/src/js/generated/SubworkflowSchemaMixin.ts +58 -0
  219. package/src/js/generated/SubworkflowUnitSchemaMixin.ts +22 -0
  220. package/src/js/generated/WorkflowSchemaMixin.ts +58 -0
  221. package/src/js/index.ts +44 -0
  222. package/src/js/units/AssertionUnit.ts +49 -0
  223. package/src/js/units/AssignmentUnit.ts +49 -0
  224. package/src/js/units/BaseUnit.ts +117 -0
  225. package/src/js/units/ConditionUnit.ts +52 -0
  226. package/src/js/units/ExecutionUnit.ts +274 -0
  227. package/src/js/units/ExecutionUnitInput.ts +71 -0
  228. package/src/js/units/IOUnit.ts +43 -0
  229. package/src/js/units/MapUnit.ts +59 -0
  230. package/src/js/units/ReduceUnit.ts +46 -0
  231. package/src/js/units/SubworkflowUnit.ts +44 -0
  232. package/src/js/units/factory.ts +131 -0
  233. package/src/js/units/index.ts +27 -0
  234. package/src/js/units/mixins/RuntimeItemsUILogicMixin.ts +81 -0
  235. package/src/js/utils/baseUnits.ts +11 -0
  236. package/src/js/utils/index.ts +3 -0
  237. package/src/js/utils/units.ts +23 -0
  238. package/src/js/utils/workflow.ts +69 -0
  239. package/src/js/workflows/{default.js → default.ts} +8 -1
  240. package/build_workflows.js +0 -65
  241. package/dist/js/context/context.js +0 -49
  242. package/dist/js/context/mixins/JobContextMixin.js +0 -39
  243. package/dist/js/context/mixins/MethodDataContextMixin.js +0 -48
  244. package/dist/js/context/mixins/WorkflowContextMixin.js +0 -28
  245. package/dist/js/context/providers/BoundaryConditionsFormDataProvider.js +0 -84
  246. package/dist/js/context/providers/CollinearMagnetizationContextProvider.js +0 -96
  247. package/dist/js/context/providers/HubbardContextProviderLegacy.js +0 -68
  248. package/dist/js/context/providers/HubbardJContextProvider.js +0 -67
  249. package/dist/js/context/providers/HubbardUContextProvider.js +0 -70
  250. package/dist/js/context/providers/HubbardVContextProvider.js +0 -92
  251. package/dist/js/context/providers/IonDynamicsContextProvider.js +0 -58
  252. package/dist/js/context/providers/MLSettingsContextProvider.js +0 -51
  253. package/dist/js/context/providers/MLTrainTestSplitContextProvider.js +0 -47
  254. package/dist/js/context/providers/NEBFormDataProvider.js +0 -42
  255. package/dist/js/context/providers/NonCollinearMagnetizationContextProvider.js +0 -187
  256. package/dist/js/context/providers/PlanewaveCutoffsContextProvider.js +0 -67
  257. package/dist/js/context/providers/PointsGridFormDataProvider.js +0 -263
  258. package/dist/js/context/providers/PointsPathFormDataProvider.js +0 -147
  259. package/dist/js/context/providers/by_application/ExecutableContextProvider.js +0 -25
  260. package/dist/js/context/providers/by_application/espresso/QENEBContextProvider.js +0 -61
  261. package/dist/js/context/providers/by_application/espresso/QEPWXContextProvider.js +0 -150
  262. package/dist/js/context/providers/by_application/nwchem/NWChemTotalEnergyContextProvider.js +0 -85
  263. package/dist/js/context/providers/by_application/vasp/VASPContextProvider.js +0 -65
  264. package/dist/js/context/providers/by_application/vasp/VASPNEBContextProvider.js +0 -57
  265. package/dist/js/context/providers.js +0 -199
  266. package/dist/js/patch.js +0 -19
  267. package/dist/js/subworkflows/convergence/non_uniform_kgrid.js +0 -31
  268. package/dist/js/subworkflows/convergence/parameter.js +0 -70
  269. package/dist/js/subworkflows/convergence/uniform_kgrid.js +0 -26
  270. package/dist/js/subworkflows/convergence.js +0 -189
  271. package/dist/js/subworkflows/create.js +0 -293
  272. package/dist/js/subworkflows/dynamic/espresso/getQpointIrrep.js +0 -34
  273. package/dist/js/subworkflows/dynamic/index.js +0 -19
  274. package/dist/js/subworkflows/dynamic/surfaceEnergy.js +0 -67
  275. package/dist/js/subworkflows/index.js +0 -19
  276. package/dist/js/units/assertion.js +0 -37
  277. package/dist/js/units/assignment.js +0 -42
  278. package/dist/js/units/base.js +0 -91
  279. package/dist/js/units/builders/AssertionUnitConfigBuilder.js +0 -34
  280. package/dist/js/units/builders/AssignmentUnitConfigBuilder.js +0 -41
  281. package/dist/js/units/builders/ExecutionUnitConfigBuilder.js +0 -67
  282. package/dist/js/units/builders/IOUnitConfigBuilder.js +0 -54
  283. package/dist/js/units/builders/UnitConfigBuilder.js +0 -85
  284. package/dist/js/units/builders/index.js +0 -18
  285. package/dist/js/units/condition.js +0 -52
  286. package/dist/js/units/execution.js +0 -225
  287. package/dist/js/units/io.js +0 -148
  288. package/dist/js/units/map.js +0 -38
  289. package/dist/js/units/processing.js +0 -41
  290. package/dist/js/units/reduce.js +0 -24
  291. package/dist/js/units/subworkflow.js +0 -23
  292. package/dist/js/workflows/create.js +0 -318
  293. package/dist/js/workflows/index.js +0 -113
  294. package/dist/js/workflows/relaxation.js +0 -38
  295. package/src/js/context/context.js +0 -47
  296. package/src/js/context/mixins/ApplicationContextMixin.js +0 -19
  297. package/src/js/context/mixins/JobContextMixin.js +0 -36
  298. package/src/js/context/mixins/MaterialContextMixin.js +0 -41
  299. package/src/js/context/mixins/MaterialsContextMixin.js +0 -18
  300. package/src/js/context/mixins/MaterialsSetContextMixin.js +0 -24
  301. package/src/js/context/mixins/MethodDataContextMixin.js +0 -48
  302. package/src/js/context/mixins/WorkflowContextMixin.js +0 -25
  303. package/src/js/context/providers/BoundaryConditionsFormDataProvider.js +0 -72
  304. package/src/js/context/providers/CollinearMagnetizationContextProvider.js +0 -105
  305. package/src/js/context/providers/HubbardContextProviderLegacy.js +0 -67
  306. package/src/js/context/providers/HubbardJContextProvider.js +0 -65
  307. package/src/js/context/providers/HubbardUContextProvider.js +0 -95
  308. package/src/js/context/providers/HubbardVContextProvider.js +0 -96
  309. package/src/js/context/providers/IonDynamicsContextProvider.js +0 -44
  310. package/src/js/context/providers/MLSettingsContextProvider.js +0 -45
  311. package/src/js/context/providers/MLTrainTestSplitContextProvider.js +0 -43
  312. package/src/js/context/providers/NEBFormDataProvider.js +0 -33
  313. package/src/js/context/providers/NonCollinearMagnetizationContextProvider.js +0 -179
  314. package/src/js/context/providers/PlanewaveCutoffsContextProvider.js +0 -65
  315. package/src/js/context/providers/PointsGridFormDataProvider.js +0 -271
  316. package/src/js/context/providers/PointsPathFormDataProvider.js +0 -163
  317. package/src/js/context/providers/by_application/ExecutableContextProvider.js +0 -17
  318. package/src/js/context/providers/by_application/espresso/QENEBContextProvider.js +0 -58
  319. package/src/js/context/providers/by_application/espresso/QEPWXContextProvider.js +0 -168
  320. package/src/js/context/providers/by_application/nwchem/NWChemTotalEnergyContextProvider.js +0 -89
  321. package/src/js/context/providers/by_application/vasp/VASPContextProvider.js +0 -58
  322. package/src/js/context/providers/by_application/vasp/VASPNEBContextProvider.js +0 -48
  323. package/src/js/context/providers/settings.js +0 -38
  324. package/src/js/context/providers.js +0 -140
  325. package/src/js/index.js +0 -57
  326. package/src/js/patch.js +0 -12
  327. package/src/js/subworkflows/convergence/enums.js +0 -12
  328. package/src/js/subworkflows/convergence/factory.js +0 -15
  329. package/src/js/subworkflows/convergence/non_uniform_kgrid.js +0 -28
  330. package/src/js/subworkflows/convergence/parameter.js +0 -58
  331. package/src/js/subworkflows/convergence/uniform_kgrid.js +0 -22
  332. package/src/js/subworkflows/convergence.js +0 -196
  333. package/src/js/subworkflows/create.js +0 -220
  334. package/src/js/subworkflows/dynamic/espresso/getQpointIrrep.js +0 -35
  335. package/src/js/subworkflows/dynamic/index.js +0 -8
  336. package/src/js/subworkflows/dynamic/surfaceEnergy.js +0 -124
  337. package/src/js/subworkflows/index.js +0 -2
  338. package/src/js/subworkflows/subworkflow.js +0 -345
  339. package/src/js/units/assertion.js +0 -29
  340. package/src/js/units/assignment.js +0 -34
  341. package/src/js/units/base.js +0 -97
  342. package/src/js/units/builders/AssertionUnitConfigBuilder.js +0 -28
  343. package/src/js/units/builders/AssignmentUnitConfigBuilder.js +0 -36
  344. package/src/js/units/builders/ExecutionUnitConfigBuilder.js +0 -59
  345. package/src/js/units/builders/IOUnitConfigBuilder.js +0 -53
  346. package/src/js/units/builders/UnitConfigBuilder.js +0 -92
  347. package/src/js/units/builders/index.js +0 -15
  348. package/src/js/units/condition.js +0 -47
  349. package/src/js/units/execution.js +0 -267
  350. package/src/js/units/factory.js +0 -53
  351. package/src/js/units/index.js +0 -25
  352. package/src/js/units/io.js +0 -163
  353. package/src/js/units/map.js +0 -33
  354. package/src/js/units/processing.js +0 -39
  355. package/src/js/units/reduce.js +0 -17
  356. package/src/js/units/subworkflow.js +0 -15
  357. package/src/js/utils.js +0 -73
  358. package/src/js/workflows/create.js +0 -227
  359. package/src/js/workflows/index.js +0 -98
  360. package/src/js/workflows/relaxation.js +0 -42
  361. package/src/js/workflows/workflow.js +0 -388
@@ -0,0 +1,67 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.getUsedApplications = getUsedApplications;
7
+ exports.getSystemName = getSystemName;
8
+ exports.getUsedModels = getUsedModels;
9
+ exports.getDefaultDescription = getDefaultDescription;
10
+ exports.getProperties = getProperties;
11
+ exports.getHumanReadableProperties = getHumanReadableProperties;
12
+ exports.getHumanReadableUsedModels = getHumanReadableUsedModels;
13
+ exports.resetUnitsStatuses = resetUnitsStatuses;
14
+ const tree_1 = require("@mat3ra/mode/dist/js/tree");
15
+ const underscore_string_1 = __importDefault(require("underscore.string"));
16
+ const baseUnits_1 = require("./baseUnits");
17
+ function getUsedApplications(workflow) {
18
+ const swApplications = workflow.subworkflows.map((sw) => sw.application);
19
+ const nestedWorkflows = workflow.workflows;
20
+ const wfApplications = nestedWorkflows.map(getUsedApplications).flat();
21
+ return [...swApplications, ...wfApplications].reduce((acc, app) => {
22
+ if (!acc.some((a) => a.name === app.name)) {
23
+ acc.push(app);
24
+ }
25
+ return acc;
26
+ }, []);
27
+ }
28
+ function getSystemName(workflow) {
29
+ const applicationNames = getUsedApplications(workflow).map((a) => a.name);
30
+ return underscore_string_1.default.slugify(`${applicationNames.join(":")}-${workflow.name}`);
31
+ }
32
+ function getUsedModels(workflow) {
33
+ return workflow.subworkflows.map((sw) => sw.model.type);
34
+ }
35
+ function getDefaultDescription(workflow) {
36
+ const applicationNames = getUsedApplications(workflow).map((a) => a.name);
37
+ return `${getUsedModels(workflow)
38
+ .join(", ")
39
+ .toUpperCase()} workflow using ${applicationNames.join(", ")}.`;
40
+ }
41
+ function getProperties(workflow) {
42
+ return [...new Set(workflow.subworkflows.map((sw) => sw.properties || []).flat())];
43
+ }
44
+ function getHumanReadableProperties(workflow) {
45
+ return getProperties(workflow).map((name) => name
46
+ .split("_")
47
+ .map((w) => w.charAt(0).toUpperCase() + w.slice(1).toLowerCase())
48
+ .join(" "));
49
+ }
50
+ function getHumanReadableUsedModels(workflow) {
51
+ return getUsedModels(workflow)
52
+ .filter((m) => m !== "unknown")
53
+ .map((m) => tree_1.MODEL_NAMES[m]);
54
+ }
55
+ function resetUnitsStatuses(workflow) {
56
+ var _a;
57
+ return {
58
+ ...workflow,
59
+ subworkflows: workflow.subworkflows.map((subworkflow) => {
60
+ return {
61
+ ...subworkflow,
62
+ units: subworkflow.units.map(baseUnits_1.resetStatus),
63
+ };
64
+ }),
65
+ workflows: (_a = workflow.workflows) === null || _a === void 0 ? void 0 : _a.map((wf) => resetUnitsStatuses(wf)),
66
+ };
67
+ }
package/dist/js/utils.js CHANGED
@@ -22,7 +22,6 @@ function setUnitsHead(units) {
22
22
  return units;
23
23
  }
24
24
 
25
- // TODO: fix setNextLinks on unit removal and convergence logic.
26
25
  /**
27
26
  * @summary Re-establishes the linked `next => flowchartId` logic in an array of units
28
27
  * @params units {Unit[]}
@@ -31,12 +30,8 @@ function setUnitsHead(units) {
31
30
  function setNextLinks(units) {
32
31
  const flowchartIds = units.map(u => u.flowchartId);
33
32
  for (let i = 0; i < units.length - 1; i++) {
34
- if (!units[i].next) {
35
- // newly added units don't have next set yet => set it
36
- units[i].next = units[i + 1].flowchartId;
37
- if (i > 0) units[i - 1].next = units[i].flowchartId;
38
- } else if (!flowchartIds.includes(units[i].next)) {
39
- // newly removed units may create broken next links => fix it
33
+ if (!units[i].next || !flowchartIds.includes(units[i].next)) {
34
+ // newly added units don't have next set yet, or removed units created broken links => fix it
40
35
  units[i].next = units[i + 1].flowchartId;
41
36
  }
42
37
  }
@@ -0,0 +1,3 @@
1
+ import type { WorkflowSchema } from "@mat3ra/esse/dist/js/types";
2
+ declare const defaultWorkflowConfig: WorkflowSchema;
3
+ export default defaultWorkflowConfig;
@@ -1,41 +1,45 @@
1
1
  "use strict";
2
-
3
- Object.defineProperty(exports, "__esModule", {
4
- value: true
5
- });
6
- exports.default = void 0;
7
- var _default = exports.default = {
8
- name: "New Workflow",
9
- properties: [],
10
- subworkflows: [{
11
- _id: "c6e9dbbee8929de01f4e76ee",
12
- application: {
13
- name: "espresso",
14
- summary: "Quantum Espresso",
15
- version: "6.3"
16
- },
17
- model: {
18
- method: {
19
- subtype: "us",
20
- type: "pseudopotential"
21
- },
22
- subtype: "gga",
23
- type: "dft"
24
- },
25
- name: "New Subworkflow",
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ const defaultWorkflowConfig = {
4
+ name: "New Workflow",
26
5
  properties: [],
27
- units: []
28
- }],
29
- workflows: [],
30
- units: [{
31
- _id: "c6e9dbbee8929de01f4e76ee",
32
- flowchartId: "da2c090ede4dc2fa6e66647f",
33
- head: true,
34
- monitors: [],
35
- postProcessors: [],
36
- preProcessors: [],
37
- results: [],
38
- type: "subworkflow",
39
- name: "New Subworkflow"
40
- }]
41
- };
6
+ subworkflows: [
7
+ {
8
+ _id: "c6e9dbbee8929de01f4e76ee",
9
+ application: {
10
+ name: "espresso",
11
+ shortName: "espresso",
12
+ summary: "Quantum Espresso",
13
+ build: "6.3",
14
+ version: "6.3",
15
+ },
16
+ model: {
17
+ method: {
18
+ subtype: "us",
19
+ type: "pseudopotential",
20
+ },
21
+ subtype: "gga",
22
+ type: "dft",
23
+ functional: "other",
24
+ },
25
+ name: "New Subworkflow",
26
+ properties: [],
27
+ units: [],
28
+ },
29
+ ],
30
+ workflows: [],
31
+ units: [
32
+ {
33
+ _id: "c6e9dbbee8929de01f4e76ee",
34
+ flowchartId: "da2c090ede4dc2fa6e66647f",
35
+ head: true,
36
+ monitors: [],
37
+ postProcessors: [],
38
+ preProcessors: [],
39
+ results: [],
40
+ type: "subworkflow",
41
+ name: "New Subworkflow",
42
+ },
43
+ ],
44
+ };
45
+ exports.default = defaultWorkflowConfig;