@mat3ra/wode 2025.11.13-0 → 2025.11.26-0

package/dist/js/index.js

@@ -3,12 +3,90 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
+Object.defineProperty(exports, "AssertionUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.AssertionUnit;
+  }
+});
+Object.defineProperty(exports, "AssignmentUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.AssignmentUnit;
+  }
+});
+Object.defineProperty(exports, "BaseUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.BaseUnit;
+  }
+});
+Object.defineProperty(exports, "ConditionUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.ConditionUnit;
+  }
+});
+Object.defineProperty(exports, "ExecutionUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.ExecutionUnit;
+  }
+});
+Object.defineProperty(exports, "IOUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.IOUnit;
+  }
+});
+Object.defineProperty(exports, "MapUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.MapUnit;
+  }
+});
+Object.defineProperty(exports, "PointsPathFormDataProvider", {
+  enumerable: true,
+  get: function () {
+    return _PointsPathFormDataProvider.PointsPathFormDataProvider;
+  }
+});
+Object.defineProperty(exports, "ProcessingUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.ProcessingUnit;
+  }
+});
+Object.defineProperty(exports, "ReduceUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.ReduceUnit;
+  }
+});
 Object.defineProperty(exports, "Subworkflow", {
   enumerable: true,
   get: function () {
     return _subworkflows.Subworkflow;
   }
 });
+Object.defineProperty(exports, "SubworkflowUnit", {
+  enumerable: true,
+  get: function () {
+    return _units.SubworkflowUnit;
+  }
+});
+Object.defineProperty(exports, "TAB_NAVIGATION_CONFIG", {
+  enumerable: true,
+  get: function () {
+    return _enums.TAB_NAVIGATION_CONFIG;
+  }
+});
+Object.defineProperty(exports, "UNIT_NAME_INVALID_CHARS", {
+  enumerable: true,
+  get: function () {
+    return _enums.UNIT_NAME_INVALID_CHARS;
+  }
+});
 Object.defineProperty(exports, "UNIT_STATUSES", {
   enumerable: true,
   get: function () {
@@ -27,6 +105,12 @@ Object.defineProperty(exports, "UnitFactory", {
     return _factory.UnitFactory;
   }
 });
+Object.defineProperty(exports, "WORKFLOW_STATUSES", {
+  enumerable: true,
+  get: function () {
+    return _enums.WORKFLOW_STATUSES;
+  }
+});
 Object.defineProperty(exports, "Workflow", {
   enumerable: true,
   get: function () {
@@ -45,6 +129,12 @@ Object.defineProperty(exports, "createSubworkflowByName", {
     return _subworkflows.createSubworkflowByName;
   }
 });
+Object.defineProperty(exports, "createWorkflow", {
+  enumerable: true,
+  get: function () {
+    return _workflows.createWorkflow;
+  }
+});
 Object.defineProperty(exports, "createWorkflowConfigs", {
   enumerable: true,
   get: function () {
@@ -57,8 +147,31 @@ Object.defineProperty(exports, "createWorkflows", {
     return _workflows.createWorkflows;
   }
 });
+Object.defineProperty(exports, "defaultMapConfig", {
+  enumerable: true,
+  get: function () {
+    return _map.defaultMapConfig;
+  }
+});
+Object.defineProperty(exports, "globalSettings", {
+  enumerable: true,
+  get: function () {
+    return _settings.globalSettings;
+  }
+});
+Object.defineProperty(exports, "wodeProviders", {
+  enumerable: true,
+  get: function () {
+    return _providers.wodeProviders;
+  }
+});
+var _providers = require("./context/providers");
+var _PointsPathFormDataProvider = require("./context/providers/PointsPathFormDataProvider");
+var _settings = require("./context/providers/settings");
 var _enums = require("./enums");
 var _subworkflows = require("./subworkflows");
+var _units = require("./units");
 var _builders = require("./units/builders");
 var _factory = require("./units/factory");
+var _map = require("./units/map");
 var _workflows = require("./workflows");

package/dist/js/subworkflows/create.js

@@ -6,7 +6,7 @@ Object.defineProperty(exports, "__esModule", {
 exports.createSubworkflow = createSubworkflow;
 exports.createSubworkflowByName = createSubworkflowByName;
 exports.createUnit = createUnit;
-var _ApplicationRegistry = _interopRequireDefault(require("@mat3ra/ade/dist/js/ApplicationRegistry"));
+var _ade = require("@mat3ra/ade");
 var _mode = require("@mat3ra/mode");
 var _standata = require("@mat3ra/standata");
 var _lodash = _interopRequireDefault(require("lodash"));
@@ -202,7 +202,7 @@ function createDynamicUnits({
 }
 function createSubworkflow({
   subworkflowData,
-  AppRegistry = _ApplicationRegistry.default,
+  AppRegistry = _ade.ApplicationRegistry,
   modelFactoryCls = _mode.ModelFactory,
   methodFactoryCls = _mode.MethodFactory,
   subworkflowCls = _subworkflow.Subworkflow,

package/dist/js/units/builders/ExecutionUnitConfigBuilder.js

@@ -4,10 +4,9 @@ Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.ExecutionUnitConfigBuilder = void 0;
-var _ApplicationRegistry = _interopRequireDefault(require("@mat3ra/ade/dist/js/ApplicationRegistry"));
+var _ade = require("@mat3ra/ade");
 var _enums = require("../../enums");
 var _UnitConfigBuilder = require("./UnitConfigBuilder");
-function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
 /* eslint-disable class-methods-use-this */
 
 class ExecutionUnitConfigBuilder extends _UnitConfigBuilder.UnitConfigBuilder {
@@ -51,7 +50,7 @@ class ExecutionUnitConfigBuilder extends _UnitConfigBuilder.UnitConfigBuilder {
    * @returns {Executable} The created executable instance
    */
   _createExecutable(application, execName) {
-    return _ApplicationRegistry.default.getExecutableByName(application.name, execName);
+    return _ade.ApplicationRegistry.getExecutableByName(application.name, execName);
   }
 
   /**
@@ -61,7 +60,7 @@ class ExecutionUnitConfigBuilder extends _UnitConfigBuilder.UnitConfigBuilder {
    * @returns {Flavor} The created flavor instance
    */
   _createFlavor(executable, flavorName) {
-    return _ApplicationRegistry.default.getFlavorByName(executable, flavorName);
+    return _ade.ApplicationRegistry.getFlavorByName(executable, flavorName);
   }
 }
 exports.ExecutionUnitConfigBuilder = ExecutionUnitConfigBuilder;

package/dist/js/units/execution.js

@@ -5,7 +5,6 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.ExecutionUnit = void 0;
 var _ade = require("@mat3ra/ade");
-var _ApplicationRegistry = _interopRequireDefault(require("@mat3ra/ade/dist/js/ApplicationRegistry"));
 var _utils = require("@mat3ra/utils");
 var _underscore = _interopRequireDefault(require("underscore"));
 var _base = require("./base");
@@ -18,9 +17,9 @@ class ExecutionUnit extends _base.BaseUnit {
    * @override this method to provide entities from other sources
    */
   _initApplication(config) {
-    this._application = _ApplicationRegistry.default.createApplication(config.application);
-    this._executable = _ApplicationRegistry.default.getExecutableByConfig(this._application.name, config.executable);
-    this._flavor = _ApplicationRegistry.default.getFlavorByConfig(this._executable, config.flavor);
+    this._application = _ade.ApplicationRegistry.createApplication(config.application);
+    this._executable = _ade.ApplicationRegistry.getExecutableByConfig(this._application.name, config.executable);
+    this._flavor = _ade.ApplicationRegistry.getFlavorByConfig(this._executable, config.flavor);
     this._templates = this._flavor ? this._flavor.inputAsTemplates : [];
   }
 
@@ -28,14 +27,14 @@ class ExecutionUnit extends _base.BaseUnit {
    * @override this method to provide default executable from other source
    */
   _getDefaultExecutable() {
-    return _ApplicationRegistry.default.getExecutableByName(this.application.name);
+    return _ade.ApplicationRegistry.getExecutableByName(this.application.name);
   }
 
   /**
    * @override this method to provide default flavor from other source
    */
   _getDefaultFlavor() {
-    return _ApplicationRegistry.default.getFlavorByName(this.executable.name);
+    return _ade.ApplicationRegistry.getFlavorByName(this.executable.name);
   }
 
   /**
@@ -49,14 +48,14 @@ class ExecutionUnit extends _base.BaseUnit {
    * @override this method to provide custom input from other sources
    */
   _getInput() {
-    return this.input || _ApplicationRegistry.default.getInputAsRenderedTemplates(this.flavor, this.getCombinedContext()) || [];
+    return this.input || _ade.ApplicationRegistry.getInputAsRenderedTemplates(this.flavor, this.getCombinedContext()) || [];
   }
 
   /**
    * @override this method to provide custom input as templates
    */
   _getInputAsTemplates() {
-    return _ApplicationRegistry.default.getInputAsTemplates(this.flavor);
+    return _ade.ApplicationRegistry.getInputAsTemplates(this.flavor);
   }
   _initRuntimeItems(keys, config) {
     this._initApplication(config);

package/dist/js/workflows/index.js

@@ -9,6 +9,12 @@ Object.defineProperty(exports, "Workflow", {
     return _workflow.Workflow;
   }
 });
+Object.defineProperty(exports, "createWorkflow", {
+  enumerable: true,
+  get: function () {
+    return _create.createWorkflow;
+  }
+});
 exports.createWorkflowConfigs = createWorkflowConfigs;
 exports.createWorkflows = createWorkflows;
 var _ade = require("@mat3ra/ade");

package/dist/js/workflows/workflow.js

@@ -4,9 +4,9 @@ Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.Workflow = void 0;
-var _ide = require("@exabyte-io/ide.js");
 var _entity = require("@mat3ra/code/dist/js/entity");
 var _workflow = _interopRequireDefault(require("@mat3ra/esse/dist/js/schema/workflow.json"));
+var _ide = require("@mat3ra/ide");
 var _mode = require("@mat3ra/mode");
 var _utils = require("@mat3ra/utils");
 var _lodash = _interopRequireDefault(require("lodash"));

package/package.json

@@ -1,13 +1,12 @@
 {
     "name": "@mat3ra/wode",
-    "version": "2025.11.13-0",
+    "version": "2025.11.26-0",
     "description": "WOrkflow DEfinitions",
     "scripts": {
         "test": "nyc --reporter=text mocha --recursive --bail --require @babel/register/lib --require tests/js/setup.js tests/js",
         "lint": "eslint src/js tests/js && prettier --write src/js tests/js",
         "lint:fix": "eslint --fix --cache src/js tests/js && prettier --write src/js tests/js",
         "transpile": "babel --out-dir dist/js src/js",
-        "postinstall": "npm run transpile",
         "prettier": "prettier --check src/js tests/js",
         "prepare": "husky install || exit 0"
     },
@@ -48,13 +47,13 @@
         "v20": "^0.1.0"
     },
     "devDependencies": {
-        "@mat3ra/ade": "^2025.10.2-2",
+        "@mat3ra/ade": "2025.11.19-0",
         "@exabyte-io/eslint-config": "2025.5.13-0",
-        "@exabyte-io/ide.js": "2024.3.26-0",
-        "@mat3ra/mode": "2025.11.6-1",
+        "@mat3ra/ide": "2025.11.19-0",
+        "@mat3ra/mode": "2025.11.13-0",
         "@mat3ra/utils": "2025.9.20-0",
         "@mat3ra/code": "2025.10.24-0",
-        "@mat3ra/esse": "2025.10.8-0",
+        "@mat3ra/esse": "git+https://github.com/Exabyte-io/esse.git#d4e2616f9ae405288d182bbcc136fad5d4eeb4b3",
         "@mat3ra/made": "2025.7.15-0",
         "@mat3ra/standata": "2025.11.12-0",
         "chai": "^4.3.4",
@@ -76,7 +75,7 @@
     },
     "peerDependencies": {
         "@mat3ra/ade": "*",
-        "@exabyte-io/ide.js": "*",
+        "@mat3ra/ide": "*",
         "@mat3ra/mode": "*",
         "@mat3ra/standata": "*",
         "@mat3ra/utils": "*",

package/src/js/context/providers/BoundaryConditionsFormDataProvider.js

@@ -1,10 +1,13 @@
-import JSONSchemaFormDataProvider from "@mat3ra/ade/dist/js/context/JSONSchemaFormDataProvider";
+import { JSONSchemaFormDataProvider } from "@mat3ra/ade";
+import JSONSchemasInterface from "@mat3ra/esse/dist/js/esse/JSONSchemasInterface";
 import { Made } from "@mat3ra/made";
 import { Utils } from "@mat3ra/utils";
 
 import { materialContextMixin } from "../mixins/MaterialContextMixin";
 
 export class BoundaryConditionsFormDataProvider extends JSONSchemaFormDataProvider {
+    jsonSchemaId = "context-providers-directory/boundary-conditions-data-provider";
+
     constructor(config) {
         super(config);
         this.initMaterialContextMixin();
@@ -24,6 +27,17 @@ export class BoundaryConditionsFormDataProvider extends JSONSchemaFormDataProvid
         };
     }
 
+    get jsonSchemaPatchConfig() {
+        const defaults = this.defaultData;
+        return {
+            type: { default: defaults.type },
+            offset: { default: defaults.offset },
+            electricField: { default: defaults.electricField },
+            targetFermiEnergy: { default: defaults.targetFermiEnergy },
+        };
+    }
+
+    // TODO: MOVE to WA/wove instantiation
     // eslint-disable-next-line class-methods-use-this
     get uiSchema() {
         return {
@@ -48,32 +62,10 @@ export class BoundaryConditionsFormDataProvider extends JSONSchemaFormDataProvid
     }
 
     get jsonSchema() {
-        return {
-            $schema: "http://json-schema.org/draft-07/schema#",
-            type: "object",
-            properties: {
-                type: {
-                    type: "string",
-                    title: "Type",
-                    default: this.defaultData.type,
-                },
-                offset: {
-                    type: "number",
-                    title: "Offset (A)",
-                    default: this.defaultData.offset,
-                },
-                electricField: {
-                    type: "number",
-                    title: "Electric Field (eV/A)",
-                    default: this.defaultData.electricField,
-                },
-                targetFermiEnergy: {
-                    type: "number",
-                    title: "Target Fermi Energy (eV)",
-                    default: this.defaultData.targetFermiEnergy,
-                },
-            },
-        };
+        return JSONSchemasInterface.getPatchedSchemaById(
+            this.jsonSchemaId,
+            this.jsonSchemaPatchConfig,
+        );
     }
 }
 

package/src/js/context/providers/CollinearMagnetizationContextProvider.js

@@ -1,9 +1,12 @@
-import JSONSchemaFormDataProvider from "@mat3ra/ade/dist/js/context/JSONSchemaFormDataProvider";
+import { JSONSchemaFormDataProvider } from "@mat3ra/ade";
+import JSONSchemasInterface from "@mat3ra/esse/dist/js/esse/JSONSchemasInterface";
 import lodash from "lodash";
 
 import { materialContextMixin } from "../mixins/MaterialContextMixin";
 
 export class CollinearMagnetizationContextProvider extends JSONSchemaFormDataProvider {
+    jsonSchemaId = "context-providers-directory/collinear-magnetization-context-provider";
+
     constructor(config) {
         super(config);
 
@@ -37,6 +40,27 @@ export class CollinearMagnetizationContextProvider extends JSONSchemaFormDataPro
         };
     }
 
+    get jsonSchemaPatchConfig() {
+        return {
+            "properties.startingMagnetization": {
+                maxItems: this.uniqueElementsWithLabels.length,
+            },
+            "properties.startingMagnetization.items.properties.atomicSpecies": {
+                enum: this.uniqueElementsWithLabels,
+                default: this.firstElement,
+            },
+            "properties.startingMagnetization.items.properties.value": {
+                default: 0.0,
+            },
+            "properties.isTotalMagnetization": {
+                default: false,
+            },
+            "properties.totalMagnetization": {
+                default: 0.0,
+            },
+        };
+    }
+
     transformData = (data) => {
         const startingMagnetizationWithIndex = data.startingMagnetization.map((row) => ({
             ...row,
@@ -71,46 +95,10 @@ export class CollinearMagnetizationContextProvider extends JSONSchemaFormDataPro
     }
 
     get jsonSchema() {
-        return {
-            $schema: "http://json-schema.org/draft-07/schema#",
-            title: "",
-            description: "Set starting magnetization, can have values in the range [-1, +1].",
-            type: "object",
-            properties: {
-                startingMagnetization: {
-                    type: "array",
-                    maxItems: this.uniqueElementsWithLabels.length,
-                    items: {
-                        type: "object",
-                        properties: {
-                            atomicSpecies: {
-                                type: "string",
-                                title: "Atomic species",
-                                enum: this.uniqueElementsWithLabels,
-                                default: this.firstElement,
-                            },
-                            value: {
-                                type: "number",
-                                title: "Starting magnetization",
-                                default: 0.0,
-                                minimum: -1.0,
-                                maximum: 1.0,
-                            },
-                        },
-                    },
-                },
-                isTotalMagnetization: {
-                    type: "boolean",
-                    title: "Set total magnetization instead",
-                    default: false,
-                },
-                totalMagnetization: {
-                    type: "number",
-                    title: "Total magnetization",
-                    default: 0.0,
-                },
-            },
-        };
+        return JSONSchemasInterface.getPatchedSchemaById(
+            this.jsonSchemaId,
+            this.jsonSchemaPatchConfig,
+        );
     }
 }
 

package/src/js/context/providers/HubbardContextProviderLegacy.js

@@ -1,3 +1,5 @@
+import JSONSchemasInterface from "@mat3ra/esse/dist/js/esse/JSONSchemasInterface";
+
 import { HubbardUContextProvider } from "./HubbardUContextProvider";
 
 const defaultHubbardConfig = {
@@ -5,6 +7,8 @@ const defaultHubbardConfig = {
 };
 
 export class HubbardContextProviderLegacy extends HubbardUContextProvider {
+    jsonSchemaId = "context-providers-directory/hubbard-legacy-context-provider";
+
     get defaultData() {
         return [
             {
@@ -15,6 +19,17 @@ export class HubbardContextProviderLegacy extends HubbardUContextProvider {
         ];
     }
 
+    get jsonSchemaPatchConfig() {
+        return {
+            "items.properties.atomicSpecies": {
+                enum: this.uniqueElementsWithLabels,
+            },
+            "items.properties.hubbardUValue": {
+                default: defaultHubbardConfig.hubbardUValue,
+            },
+        };
+    }
+
     speciesIndexFromSpecies = (species) => {
         return this.uniqueElementsWithLabels?.length > 0
             ? this.uniqueElementsWithLabels.indexOf(species) + 1
@@ -44,32 +59,9 @@ export class HubbardContextProviderLegacy extends HubbardUContextProvider {
     }
 
     get jsonSchema() {
-        return {
-            $schema: "http://json-schema.org/draft-07/schema#",
-            title: "",
-            description: "Hubbard parameters for DFT+U calculation.",
-            type: "array",
-            uniqueItems: true,
-            minItems: 1,
-            items: {
-                type: "object",
-                properties: {
-                    atomicSpecies: {
-                        type: "string",
-                        title: "Atomic species",
-                        enum: this.uniqueElementsWithLabels,
-                    },
-                    atomicSpeciesIndex: {
-                        type: "integer",
-                        title: "Species index",
-                    },
-                    hubbardUValue: {
-                        type: "number",
-                        title: "Hubbard U (eV)",
-                        default: defaultHubbardConfig.hubbardUValue,
-                    },
-                },
-            },
-        };
+        return JSONSchemasInterface.getPatchedSchemaById(
+            this.jsonSchemaId,
+            this.jsonSchemaPatchConfig,
+        );
     }
 }

package/src/js/context/providers/HubbardJContextProvider.js

@@ -1,3 +1,5 @@
+import JSONSchemasInterface from "@mat3ra/esse/dist/js/esse/JSONSchemasInterface";
+
 import { HubbardUContextProvider } from "./HubbardUContextProvider";
 
 const defaultHubbardConfig = {
@@ -8,6 +10,8 @@ const defaultHubbardConfig = {
 };
 
 export class HubbardJContextProvider extends HubbardUContextProvider {
+    jsonSchemaId = "context-providers-directory/hubbard-j-context-provider";
+
     get defaultData() {
         return [
             {
@@ -17,6 +21,25 @@ export class HubbardJContextProvider extends HubbardUContextProvider {
         ];
     }
 
+    get jsonSchemaPatchConfig() {
+        return {
+            "items.properties.paramType": {
+                default: defaultHubbardConfig.paramType,
+            },
+            "items.properties.atomicSpecies": {
+                enum: this.uniqueElementsWithLabels,
+                default: this.firstElement,
+            },
+            "items.properties.atomicOrbital": {
+                enum: this.orbitalList,
+                default: defaultHubbardConfig.atomicOrbital,
+            },
+            "items.properties.value": {
+                default: defaultHubbardConfig.value,
+            },
+        };
+    }
+
     get uiSchemaStyled() {
         return {
             "ui:options": {
@@ -34,40 +57,9 @@ export class HubbardJContextProvider extends HubbardUContextProvider {
     }
 
     get jsonSchema() {
-        return {
-            $schema: "http://json-schema.org/draft-07/schema#",
-            title: "",
-            description: "Hubbard parameters for DFT+U+J calculation.",
-            type: "array",
-            items: {
-                type: "object",
-                properties: {
-                    paramType: {
-                        type: "string",
-                        title: "Species",
-                        enum: ["U", "J", "B", "E2", "E3"],
-                        default: defaultHubbardConfig.paramType,
-                    },
-                    atomicSpecies: {
-                        type: "string",
-                        title: "Species",
-                        enum: this.uniqueElementsWithLabels,
-                        default: this.firstElement,
-                    },
-                    atomicOrbital: {
-                        type: "string",
-                        title: "Orbital",
-                        enum: this.orbitalList,
-                        default: defaultHubbardConfig.atomicOrbital,
-                    },
-                    value: {
-                        type: "number",
-                        title: "Value (eV)",
-                        default: defaultHubbardConfig.value,
-                    },
-                },
-            },
-            minItems: 1,
-        };
+        return JSONSchemasInterface.getPatchedSchemaById(
+            this.jsonSchemaId,
+            this.jsonSchemaPatchConfig,
+        );
     }
 }