@mat3ra/wode 2025.10.1-0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.babelrc +17 -0
- package/LICENSE.md +15 -0
- package/README.md +164 -0
- package/assets/subworkflows/deepmd/deepmd.yml +31 -0
- package/assets/subworkflows/deepmd/espresso_cp_md.yml +16 -0
- package/assets/subworkflows/espresso/average_electrostatic_potential_find_minima.yml +27 -0
- package/assets/subworkflows/espresso/average_electrostatic_potential_via_band_structure.yml +67 -0
- package/assets/subworkflows/espresso/band_gap.yml +21 -0
- package/assets/subworkflows/espresso/band_gap_hse_dos.yml +30 -0
- package/assets/subworkflows/espresso/band_structure.yml +26 -0
- package/assets/subworkflows/espresso/band_structure_dos.yml +34 -0
- package/assets/subworkflows/espresso/band_structure_hse.yml +30 -0
- package/assets/subworkflows/espresso/band_structure_magn.yml +31 -0
- package/assets/subworkflows/espresso/band_structure_soc.yml +30 -0
- package/assets/subworkflows/espresso/dielectric_tensor.yml +35 -0
- package/assets/subworkflows/espresso/dos.yml +24 -0
- package/assets/subworkflows/espresso/electronic_density_mesh.yml +19 -0
- package/assets/subworkflows/espresso/esm.yml +14 -0
- package/assets/subworkflows/espresso/esm_relax.yml +14 -0
- package/assets/subworkflows/espresso/espresso_extract_kpoints.yml +16 -0
- package/assets/subworkflows/espresso/espresso_xml_get_qpt_irr.yml +12 -0
- package/assets/subworkflows/espresso/fixed_cell_relaxation.yml +16 -0
- package/assets/subworkflows/espresso/gw_band_structure_band_gap_full_frequency.yml +22 -0
- package/assets/subworkflows/espresso/gw_band_structure_band_gap_plasmon_pole.yml +22 -0
- package/assets/subworkflows/espresso/hubbard_u_hp.yml +21 -0
- package/assets/subworkflows/espresso/kpoint_convergence.yml +86 -0
- package/assets/subworkflows/espresso/neb.yml +16 -0
- package/assets/subworkflows/espresso/ph_init_qpoints.yml +14 -0
- package/assets/subworkflows/espresso/ph_single_irr_qpt.yml +14 -0
- package/assets/subworkflows/espresso/phonon_dispersions.yml +29 -0
- package/assets/subworkflows/espresso/phonon_dos.yml +29 -0
- package/assets/subworkflows/espresso/phonon_dos_dispersion.yml +34 -0
- package/assets/subworkflows/espresso/phonon_reduce.yml +29 -0
- package/assets/subworkflows/espresso/post_processor.yml +14 -0
- package/assets/subworkflows/espresso/pre_processor.yml +14 -0
- package/assets/subworkflows/espresso/pw_scf.yml +16 -0
- package/assets/subworkflows/espresso/recalculate_bands.yml +19 -0
- package/assets/subworkflows/espresso/surface_energy.yml +16 -0
- package/assets/subworkflows/espresso/total_energy.yml +16 -0
- package/assets/subworkflows/espresso/valence_band_offset_calc_from_previous_esp_vbm.yml +35 -0
- package/assets/subworkflows/espresso/variable_cell_relaxation.yml +18 -0
- package/assets/subworkflows/espresso/zero_point_energy.yml +19 -0
- package/assets/subworkflows/jupyterLab/jupyter_notebook.yml +17 -0
- package/assets/subworkflows/nwchem/total_energy.yml +16 -0
- package/assets/subworkflows/python/ml/classification_tail.yml +56 -0
- package/assets/subworkflows/python/ml/clustering_tail.yml +62 -0
- package/assets/subworkflows/python/ml/regression_tail.yml +56 -0
- package/assets/subworkflows/python/ml/train_head.yml +61 -0
- package/assets/subworkflows/python/python_script.yml +14 -0
- package/assets/subworkflows/shell/batch_espresso_pwscf.yml +14 -0
- package/assets/subworkflows/shell/hello_world.yml +14 -0
- package/assets/subworkflows/vasp/band_gap.yml +21 -0
- package/assets/subworkflows/vasp/band_structure.yml +21 -0
- package/assets/subworkflows/vasp/band_structure_dos.yml +23 -0
- package/assets/subworkflows/vasp/dos.yml +18 -0
- package/assets/subworkflows/vasp/fixed_cell_relaxation.yml +16 -0
- package/assets/subworkflows/vasp/initial_final_total_energies.yml +25 -0
- package/assets/subworkflows/vasp/kpoint_convergence.yml +89 -0
- package/assets/subworkflows/vasp/neb_subworkflow.yml +16 -0
- package/assets/subworkflows/vasp/prepare_images.yml +16 -0
- package/assets/subworkflows/vasp/recalculate_bands.yml +16 -0
- package/assets/subworkflows/vasp/surface_energy.yml +18 -0
- package/assets/subworkflows/vasp/total_energy.yml +16 -0
- package/assets/subworkflows/vasp/variable_cell_relaxation.yml +18 -0
- package/assets/subworkflows/vasp/zero_point_energy.yml +16 -0
- package/assets/workflows/deepmd/deepmd_md.yml +6 -0
- package/assets/workflows/espresso/band_gap.yml +4 -0
- package/assets/workflows/espresso/band_gap_dos_hse.yml +4 -0
- package/assets/workflows/espresso/band_structure.yml +4 -0
- package/assets/workflows/espresso/band_structure_dos.yml +4 -0
- package/assets/workflows/espresso/band_structure_hse.yml +14 -0
- package/assets/workflows/espresso/band_structure_magn.yml +7 -0
- package/assets/workflows/espresso/band_structure_soc.yml +7 -0
- package/assets/workflows/espresso/dielectric_tensor.yml +4 -0
- package/assets/workflows/espresso/dos.yml +4 -0
- package/assets/workflows/espresso/electronic_density_mesh.yml +4 -0
- package/assets/workflows/espresso/esm.yml +4 -0
- package/assets/workflows/espresso/esm_relax.yml +4 -0
- package/assets/workflows/espresso/fixed_cell_relaxation.yml +4 -0
- package/assets/workflows/espresso/gw_band_structure_band_gap_full_frequency.yml +4 -0
- package/assets/workflows/espresso/gw_band_structure_band_gap_plasmon_pole.yml +4 -0
- package/assets/workflows/espresso/hubbard_u_hp.yml +7 -0
- package/assets/workflows/espresso/kpoint_convergence.yml +4 -0
- package/assets/workflows/espresso/neb.yml +4 -0
- package/assets/workflows/espresso/phonon_dispersions.yml +4 -0
- package/assets/workflows/espresso/phonon_dos.yml +4 -0
- package/assets/workflows/espresso/phonon_dos_dispersion.yml +4 -0
- package/assets/workflows/espresso/phonon_map.yml +28 -0
- package/assets/workflows/espresso/recalculate_bands.yml +4 -0
- package/assets/workflows/espresso/surface_energy.yml +4 -0
- package/assets/workflows/espresso/total_energy.yml +4 -0
- package/assets/workflows/espresso/valence_band_offset.yml +171 -0
- package/assets/workflows/espresso/variable_cell_relaxation.yml +4 -0
- package/assets/workflows/espresso/zero_point_energy.yml +4 -0
- package/assets/workflows/jupyterLab/jupyter_notebook.yml +4 -0
- package/assets/workflows/nwchem/total_energy.yml +4 -0
- package/assets/workflows/python/ml/classification_workflow.yml +9 -0
- package/assets/workflows/python/ml/clustering_workflow.yml +9 -0
- package/assets/workflows/python/ml/regression_workflow.yml +9 -0
- package/assets/workflows/python/python_script.yml +4 -0
- package/assets/workflows/shell/batch_espresso_pwscf.yml +4 -0
- package/assets/workflows/shell/hello_world.yml +4 -0
- package/assets/workflows/vasp/band_gap.yml +4 -0
- package/assets/workflows/vasp/band_structure.yml +4 -0
- package/assets/workflows/vasp/band_structure_dos.yml +4 -0
- package/assets/workflows/vasp/dos.yml +4 -0
- package/assets/workflows/vasp/fixed_cell_relaxation.yml +4 -0
- package/assets/workflows/vasp/kpoint_convergence.yml +4 -0
- package/assets/workflows/vasp/neb.yml +8 -0
- package/assets/workflows/vasp/recalculate_bands.yml +4 -0
- package/assets/workflows/vasp/surface_energy.yml +4 -0
- package/assets/workflows/vasp/total_energy.yml +4 -0
- package/assets/workflows/vasp/variable_cell_relaxation.yml +4 -0
- package/assets/workflows/vasp/zero_point_energy.yml +4 -0
- package/build_workflows.js +65 -0
- package/dist/context/context.js +49 -0
- package/dist/context/mixins/ApplicationContextMixin.js +19 -0
- package/dist/context/mixins/JobContextMixin.js +39 -0
- package/dist/context/mixins/MaterialContextMixin.js +40 -0
- package/dist/context/mixins/MaterialsContextMixin.js +19 -0
- package/dist/context/mixins/MaterialsSetContextMixin.js +25 -0
- package/dist/context/mixins/MethodDataContextMixin.js +48 -0
- package/dist/context/mixins/WorkflowContextMixin.js +28 -0
- package/dist/context/providers/BoundaryConditionsFormDataProvider.js +86 -0
- package/dist/context/providers/CollinearMagnetizationContextProvider.js +113 -0
- package/dist/context/providers/HubbardContextProviderLegacy.js +81 -0
- package/dist/context/providers/HubbardJContextProvider.js +74 -0
- package/dist/context/providers/HubbardUContextProvider.js +77 -0
- package/dist/context/providers/HubbardVContextProvider.js +104 -0
- package/dist/context/providers/IonDynamicsContextProvider.js +62 -0
- package/dist/context/providers/MLSettingsContextProvider.js +52 -0
- package/dist/context/providers/MLTrainTestSplitContextProvider.js +48 -0
- package/dist/context/providers/NEBFormDataProvider.js +38 -0
- package/dist/context/providers/NonCollinearMagnetizationContextProvider.js +253 -0
- package/dist/context/providers/PlanewaveCutoffsContextProvider.js +67 -0
- package/dist/context/providers/PointsGridFormDataProvider.js +272 -0
- package/dist/context/providers/PointsPathFormDataProvider.js +155 -0
- package/dist/context/providers/by_application/ExecutableContextProvider.js +17 -0
- package/dist/context/providers/by_application/espresso/QENEBContextProvider.js +60 -0
- package/dist/context/providers/by_application/espresso/QEPWXContextProvider.js +149 -0
- package/dist/context/providers/by_application/nwchem/NWChemTotalEnergyContextProvider.js +84 -0
- package/dist/context/providers/by_application/vasp/VASPContextProvider.js +64 -0
- package/dist/context/providers/by_application/vasp/VASPNEBContextProvider.js +56 -0
- package/dist/context/providers/settings.js +37 -0
- package/dist/context/providers.js +199 -0
- package/dist/enums.js +65 -0
- package/dist/index.js +64 -0
- package/dist/patch.js +19 -0
- package/dist/subworkflows/convergence/factory.js +35 -0
- package/dist/subworkflows/convergence/non_uniform_kgrid.js +31 -0
- package/dist/subworkflows/convergence/parameter.js +70 -0
- package/dist/subworkflows/convergence/uniform_kgrid.js +26 -0
- package/dist/subworkflows/convergence.js +189 -0
- package/dist/subworkflows/create.js +285 -0
- package/dist/subworkflows/dynamic/espresso/getQpointIrrep.js +34 -0
- package/dist/subworkflows/dynamic/index.js +19 -0
- package/dist/subworkflows/dynamic/surfaceEnergy.js +67 -0
- package/dist/subworkflows/index.js +19 -0
- package/dist/subworkflows/subworkflow.js +279 -0
- package/dist/units/assertion.js +37 -0
- package/dist/units/assignment.js +42 -0
- package/dist/units/base.js +91 -0
- package/dist/units/builders/AssertionUnitConfigBuilder.js +34 -0
- package/dist/units/builders/AssignmentUnitConfigBuilder.js +41 -0
- package/dist/units/builders/ExecutionUnitConfigBuilder.js +67 -0
- package/dist/units/builders/IOUnitConfigBuilder.js +54 -0
- package/dist/units/builders/UnitConfigBuilder.js +79 -0
- package/dist/units/builders/index.js +18 -0
- package/dist/units/condition.js +52 -0
- package/dist/units/execution.js +222 -0
- package/dist/units/factory.js +53 -0
- package/dist/units/index.js +82 -0
- package/dist/units/io.js +148 -0
- package/dist/units/map.js +38 -0
- package/dist/units/processing.js +41 -0
- package/dist/units/reduce.js +24 -0
- package/dist/units/subworkflow.js +23 -0
- package/dist/utils.js +92 -0
- package/dist/workflows/create.js +312 -0
- package/dist/workflows/default.js +41 -0
- package/dist/workflows/index.js +108 -0
- package/dist/workflows/relaxation.js +37 -0
- package/dist/workflows/workflow.js +303 -0
- package/package.json +94 -0
- package/src/context/context.js +47 -0
- package/src/context/mixins/ApplicationContextMixin.js +19 -0
- package/src/context/mixins/JobContextMixin.js +36 -0
- package/src/context/mixins/MaterialContextMixin.js +41 -0
- package/src/context/mixins/MaterialsContextMixin.js +18 -0
- package/src/context/mixins/MaterialsSetContextMixin.js +24 -0
- package/src/context/mixins/MethodDataContextMixin.js +48 -0
- package/src/context/mixins/WorkflowContextMixin.js +25 -0
- package/src/context/providers/BoundaryConditionsFormDataProvider.js +80 -0
- package/src/context/providers/CollinearMagnetizationContextProvider.js +117 -0
- package/src/context/providers/HubbardContextProviderLegacy.js +75 -0
- package/src/context/providers/HubbardJContextProvider.js +73 -0
- package/src/context/providers/HubbardUContextProvider.js +100 -0
- package/src/context/providers/HubbardVContextProvider.js +111 -0
- package/src/context/providers/IonDynamicsContextProvider.js +56 -0
- package/src/context/providers/MLSettingsContextProvider.js +48 -0
- package/src/context/providers/MLTrainTestSplitContextProvider.js +45 -0
- package/src/context/providers/NEBFormDataProvider.js +32 -0
- package/src/context/providers/NonCollinearMagnetizationContextProvider.js +269 -0
- package/src/context/providers/PlanewaveCutoffsContextProvider.js +68 -0
- package/src/context/providers/PointsGridFormDataProvider.js +285 -0
- package/src/context/providers/PointsPathFormDataProvider.js +165 -0
- package/src/context/providers/by_application/ExecutableContextProvider.js +10 -0
- package/src/context/providers/by_application/espresso/QENEBContextProvider.js +56 -0
- package/src/context/providers/by_application/espresso/QEPWXContextProvider.js +166 -0
- package/src/context/providers/by_application/nwchem/NWChemTotalEnergyContextProvider.js +86 -0
- package/src/context/providers/by_application/vasp/VASPContextProvider.js +56 -0
- package/src/context/providers/by_application/vasp/VASPNEBContextProvider.js +46 -0
- package/src/context/providers/settings.js +38 -0
- package/src/context/providers.js +140 -0
- package/src/enums.js +65 -0
- package/src/index.js +17 -0
- package/src/patch.js +12 -0
- package/src/subworkflows/convergence/factory.js +14 -0
- package/src/subworkflows/convergence/non_uniform_kgrid.js +28 -0
- package/src/subworkflows/convergence/parameter.js +58 -0
- package/src/subworkflows/convergence/uniform_kgrid.js +22 -0
- package/src/subworkflows/convergence.js +196 -0
- package/src/subworkflows/create.js +201 -0
- package/src/subworkflows/dynamic/espresso/getQpointIrrep.js +35 -0
- package/src/subworkflows/dynamic/index.js +8 -0
- package/src/subworkflows/dynamic/surfaceEnergy.js +124 -0
- package/src/subworkflows/index.js +2 -0
- package/src/subworkflows/subworkflow.js +329 -0
- package/src/units/assertion.js +29 -0
- package/src/units/assignment.js +34 -0
- package/src/units/base.js +97 -0
- package/src/units/builders/AssertionUnitConfigBuilder.js +28 -0
- package/src/units/builders/AssignmentUnitConfigBuilder.js +36 -0
- package/src/units/builders/ExecutionUnitConfigBuilder.js +59 -0
- package/src/units/builders/IOUnitConfigBuilder.js +53 -0
- package/src/units/builders/UnitConfigBuilder.js +86 -0
- package/src/units/builders/index.js +15 -0
- package/src/units/condition.js +47 -0
- package/src/units/execution.js +263 -0
- package/src/units/factory.js +53 -0
- package/src/units/index.js +25 -0
- package/src/units/io.js +163 -0
- package/src/units/map.js +33 -0
- package/src/units/processing.js +39 -0
- package/src/units/reduce.js +17 -0
- package/src/units/subworkflow.js +15 -0
- package/src/utils.js +73 -0
- package/src/workflows/create.js +222 -0
- package/src/workflows/default.js +39 -0
- package/src/workflows/index.js +99 -0
- package/src/workflows/relaxation.js +41 -0
- package/src/workflows/workflow.js +351 -0
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"use strict";
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports.default = void 0;
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var _periodicTable = require("@exabyte-io/periodic-table.js");
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var _lodash = _interopRequireDefault(require("lodash"));
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var _underscore = _interopRequireDefault(require("underscore"));
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var _underscore2 = _interopRequireDefault(require("underscore.string"));
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var _JobContextMixin = require("../../../mixins/JobContextMixin");
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var _MaterialContextMixin = require("../../../mixins/MaterialContextMixin");
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var _MethodDataContextMixin = require("../../../mixins/MethodDataContextMixin");
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var _WorkflowContextMixin = require("../../../mixins/WorkflowContextMixin");
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var _ExecutableContextProvider = _interopRequireDefault(require("../ExecutableContextProvider"));
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function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
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function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
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function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
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class NWChemTotalEnergyContextProvider extends _ExecutableContextProvider.default {
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constructor(config) {
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this.initMethodDataContextMixin();
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this.initMaterialContextMixin();
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}
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get atomicPositionsWithoutConstraints() {
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}
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get atomicPositions() {
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}
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get atomSymbols() {
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get cartesianAtomicPositions() {
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}
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get ATOMIC_SPECIES() {
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}
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/*
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* considering the content of `this.data`, and `this.isEdited` field(s).
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*/
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getData() {
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/*
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*/
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const CHARGE = 0;
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const MULT = 1;
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const BASIS = "6-31G";
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const FUNCTIONAL = "B3LYP";
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return {
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CHARGE,
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MULT,
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BASIS,
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NAT: this.atomicPositions.length,
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NTYP: this.atomSymbols.length,
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ATOMIC_POSITIONS: this.atomicPositions.join("\n"),
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ATOMIC_POSITIONS_WITHOUT_CONSTRAINTS: this.atomicPositionsWithoutConstraints.join("\n"),
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ATOMIC_SPECIES: this.ATOMIC_SPECIES,
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FUNCTIONAL,
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CARTESIAN: this.cartesianAtomicPositions
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};
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}
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static symbolToAtomicSpecies(symbol, pseudo) {
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const el = _periodicTable.PERIODIC_TABLE[symbol];
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const filename = pseudo ? _lodash.default.get(pseudo, "filename", _underscore2.default.strRightBack(pseudo.path || "", "/")) : "";
|
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return el ? _underscore2.default.sprintf("%s %f %s", symbol, el.atomic_mass, filename) : undefined;
|
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}
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}
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exports.default = NWChemTotalEnergyContextProvider;
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(0, _MaterialContextMixin.materialContextMixin)(NWChemTotalEnergyContextProvider.prototype);
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(0, _MethodDataContextMixin.methodDataContextMixin)(NWChemTotalEnergyContextProvider.prototype);
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(0, _WorkflowContextMixin.workflowContextMixin)(NWChemTotalEnergyContextProvider.prototype);
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(0, _JobContextMixin.jobContextMixin)(NWChemTotalEnergyContextProvider.prototype);
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@@ -0,0 +1,64 @@
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"use strict";
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports.default = void 0;
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var _JobContextMixin = require("../../../mixins/JobContextMixin");
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var _MaterialContextMixin = require("../../../mixins/MaterialContextMixin");
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var _MaterialsContextMixin = require("../../../mixins/MaterialsContextMixin");
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var _MethodDataContextMixin = require("../../../mixins/MethodDataContextMixin");
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var _WorkflowContextMixin = require("../../../mixins/WorkflowContextMixin");
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var _ExecutableContextProvider = _interopRequireDefault(require("../ExecutableContextProvider"));
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function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
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function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
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function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
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class VASPContextProvider extends _ExecutableContextProvider.default {
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constructor(config) {
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super(config);
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_defineProperty(this, "_material", undefined);
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_defineProperty(this, "_materials", []);
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this.initJobContextMixin();
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this.initMaterialsContextMixin();
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this.initMethodDataContextMixin();
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this.initWorkflowContextMixin();
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this.initMaterialContextMixin();
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}
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// eslint-disable-next-line class-methods-use-this
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buildVASPContext(material) {
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return {
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// TODO: figure out whether we need two separate POSCARS, maybe one is enough
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POSCAR: material.getAsPOSCAR(true, true),
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POSCAR_WITH_CONSTRAINTS: material.getAsPOSCAR(true)
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};
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}
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getDataPerMaterial() {
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|
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if (!this.materials || this.materials.length <= 1) return {};
|
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return {
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perMaterial: this.materials.map(material => this.buildVASPContext(material))
|
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};
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}
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/*
|
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* @NOTE: Overriding getData makes this provider "stateless", ie. delivering data from scratch each time and not
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* considering the content of `this.data`, and `this.isEdited` field(s).
|
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*/
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getData() {
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// consider adjusting so that below values are read from PlanewaveDataManager
|
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// ECUTWFC;
|
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// ECUTRHO;
|
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|
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return {
|
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|
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...this.buildVASPContext(this.material),
|
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...this.getDataPerMaterial()
|
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|
+
};
|
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|
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}
|
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}
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exports.default = VASPContextProvider;
|
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(0, _MaterialContextMixin.materialContextMixin)(VASPContextProvider.prototype);
|
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(0, _MaterialsContextMixin.materialsContextMixin)(VASPContextProvider.prototype);
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(0, _MethodDataContextMixin.methodDataContextMixin)(VASPContextProvider.prototype);
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(0, _WorkflowContextMixin.workflowContextMixin)(VASPContextProvider.prototype);
|
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(0, _JobContextMixin.jobContextMixin)(VASPContextProvider.prototype);
|
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@@ -0,0 +1,56 @@
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"use strict";
|
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2
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+
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Object.defineProperty(exports, "__esModule", {
|
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value: true
|
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});
|
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exports.default = void 0;
|
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7
|
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var _JobContextMixin = require("../../../mixins/JobContextMixin");
|
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8
|
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var _MaterialContextMixin = require("../../../mixins/MaterialContextMixin");
|
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9
|
+
var _MaterialsContextMixin = require("../../../mixins/MaterialsContextMixin");
|
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10
|
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var _MaterialsSetContextMixin = require("../../../mixins/MaterialsSetContextMixin");
|
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|
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var _MethodDataContextMixin = require("../../../mixins/MethodDataContextMixin");
|
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|
+
var _WorkflowContextMixin = require("../../../mixins/WorkflowContextMixin");
|
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13
|
+
var _ExecutableContextProvider = _interopRequireDefault(require("../ExecutableContextProvider"));
|
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14
|
+
var _VASPContextProvider = _interopRequireDefault(require("./VASPContextProvider"));
|
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|
+
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
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|
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function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
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+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
18
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
19
|
+
class VASPNEBContextProvider extends _ExecutableContextProvider.default {
|
|
20
|
+
constructor(config) {
|
|
21
|
+
super(config);
|
|
22
|
+
_defineProperty(this, "_materials", []);
|
|
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|
+
this.initMaterialContextMixin();
|
|
24
|
+
this.initMaterialsContextMixin();
|
|
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|
+
this.initMaterialsSetContextMixin();
|
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|
+
this.initMethodDataContextMixin();
|
|
27
|
+
this.initWorkflowContextMixin();
|
|
28
|
+
this.initJobContextMixin();
|
|
29
|
+
}
|
|
30
|
+
getData() {
|
|
31
|
+
const sortedMaterials = this.sortMaterialsByIndexInSet(this.materials);
|
|
32
|
+
const VASPContexts = sortedMaterials.map(material => {
|
|
33
|
+
const context = {
|
|
34
|
+
...this.config.context,
|
|
35
|
+
material
|
|
36
|
+
};
|
|
37
|
+
const config = {
|
|
38
|
+
...this.config,
|
|
39
|
+
context
|
|
40
|
+
};
|
|
41
|
+
return new _VASPContextProvider.default(config).getData();
|
|
42
|
+
});
|
|
43
|
+
return {
|
|
44
|
+
FIRST_IMAGE: VASPContexts[0].POSCAR_WITH_CONSTRAINTS,
|
|
45
|
+
LAST_IMAGE: VASPContexts[VASPContexts.length - 1].POSCAR_WITH_CONSTRAINTS,
|
|
46
|
+
INTERMEDIATE_IMAGES: VASPContexts.slice(1, VASPContexts.length - 1).map(data => data.POSCAR_WITH_CONSTRAINTS)
|
|
47
|
+
};
|
|
48
|
+
}
|
|
49
|
+
}
|
|
50
|
+
exports.default = VASPNEBContextProvider;
|
|
51
|
+
(0, _MaterialContextMixin.materialContextMixin)(VASPNEBContextProvider.prototype);
|
|
52
|
+
(0, _MaterialsContextMixin.materialsContextMixin)(VASPNEBContextProvider.prototype);
|
|
53
|
+
(0, _MaterialsSetContextMixin.materialsSetContextMixin)(VASPNEBContextProvider.prototype);
|
|
54
|
+
(0, _MethodDataContextMixin.methodDataContextMixin)(VASPNEBContextProvider.prototype);
|
|
55
|
+
(0, _WorkflowContextMixin.workflowContextMixin)(VASPNEBContextProvider.prototype);
|
|
56
|
+
(0, _JobContextMixin.jobContextMixin)(VASPNEBContextProvider.prototype);
|
|
@@ -0,0 +1,37 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
Object.defineProperty(exports, "__esModule", {
|
|
4
|
+
value: true
|
|
5
|
+
});
|
|
6
|
+
exports.globalSettings = void 0;
|
|
7
|
+
var _ade = require("@exabyte-io/ade.js");
|
|
8
|
+
var _made = require("@mat3ra/made");
|
|
9
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
10
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
11
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
12
|
+
class GlobalSettings {
|
|
13
|
+
constructor() {
|
|
14
|
+
_defineProperty(this, "PointsGridFormDataProvider.defaultKPPRA", 5);
|
|
15
|
+
_defineProperty(this, "Material", _made.Made.Material);
|
|
16
|
+
_defineProperty(this, "Application", _ade.Application);
|
|
17
|
+
this.resetDefaults();
|
|
18
|
+
}
|
|
19
|
+
get defaultKPPRA() {
|
|
20
|
+
return this["PointsGridFormDataProvider.defaultKPPRA"];
|
|
21
|
+
}
|
|
22
|
+
setApplication(application) {
|
|
23
|
+
this.Application = application;
|
|
24
|
+
}
|
|
25
|
+
setMaterial(material) {
|
|
26
|
+
this.Material = material;
|
|
27
|
+
}
|
|
28
|
+
setDefaultKPPRA(kppra) {
|
|
29
|
+
this["PointsGridFormDataProvider.defaultKPPRA"] = kppra;
|
|
30
|
+
}
|
|
31
|
+
resetDefaults() {
|
|
32
|
+
this.Material = _made.Made.Material;
|
|
33
|
+
this.Application = _ade.Application;
|
|
34
|
+
this["PointsGridFormDataProvider.defaultKPPRA"] = 5;
|
|
35
|
+
}
|
|
36
|
+
}
|
|
37
|
+
const globalSettings = exports.globalSettings = new GlobalSettings();
|
|
@@ -0,0 +1,199 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
Object.defineProperty(exports, "__esModule", {
|
|
4
|
+
value: true
|
|
5
|
+
});
|
|
6
|
+
exports.wodeProviders = void 0;
|
|
7
|
+
var _context = _interopRequireDefault(require("./context"));
|
|
8
|
+
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
9
|
+
const {
|
|
10
|
+
BoundaryConditionsFormDataProvider,
|
|
11
|
+
MLSettingsContextProvider,
|
|
12
|
+
MLTrainTestSplitContextProvider,
|
|
13
|
+
NEBFormDataProvider,
|
|
14
|
+
PlanewaveCutoffsContextProvider,
|
|
15
|
+
PointsGridFormDataProvider,
|
|
16
|
+
PointsPathFormDataProvider,
|
|
17
|
+
ExplicitPointsPathFormDataProvider,
|
|
18
|
+
ExplicitPointsPath2PIBAFormDataProvider,
|
|
19
|
+
HubbardJContextProvider,
|
|
20
|
+
HubbardUContextProvider,
|
|
21
|
+
HubbardVContextProvider,
|
|
22
|
+
HubbardContextProviderLegacy,
|
|
23
|
+
IonDynamicsContextProvider,
|
|
24
|
+
CollinearMagnetizationContextProvider,
|
|
25
|
+
NonCollinearMagnetizationContextProvider,
|
|
26
|
+
VASPContextProvider,
|
|
27
|
+
VASPNEBContextProvider,
|
|
28
|
+
QEPWXContextProvider,
|
|
29
|
+
QENEBContextProvider,
|
|
30
|
+
NWChemTotalEnergyContextProvider
|
|
31
|
+
} = _context.default;
|
|
32
|
+
const CONTEXT_DOMAINS = {
|
|
33
|
+
important: "important" // used to generate `ImportantSettings` form
|
|
34
|
+
};
|
|
35
|
+
const _makeImportant = config => Object.assign(config, {
|
|
36
|
+
domain: CONTEXT_DOMAINS.important
|
|
37
|
+
});
|
|
38
|
+
|
|
39
|
+
/** ********************************
|
|
40
|
+
* Method-based context providers *
|
|
41
|
+
********************************* */
|
|
42
|
+
|
|
43
|
+
const wodeProviders = exports.wodeProviders = {
|
|
44
|
+
// NOTE: subworkflow-level data manager. Will override the unit-level data with the same name via subworkflow context.
|
|
45
|
+
PlanewaveCutoffDataManager: {
|
|
46
|
+
providerCls: PlanewaveCutoffsContextProvider,
|
|
47
|
+
config: _makeImportant({
|
|
48
|
+
name: "cutoffs",
|
|
49
|
+
entityName: "subworkflow"
|
|
50
|
+
})
|
|
51
|
+
},
|
|
52
|
+
KGridFormDataManager: {
|
|
53
|
+
providerCls: PointsGridFormDataProvider,
|
|
54
|
+
config: _makeImportant({
|
|
55
|
+
name: "kgrid"
|
|
56
|
+
})
|
|
57
|
+
},
|
|
58
|
+
QGridFormDataManager: {
|
|
59
|
+
providerCls: PointsGridFormDataProvider,
|
|
60
|
+
config: _makeImportant({
|
|
61
|
+
name: "qgrid",
|
|
62
|
+
divisor: 5
|
|
63
|
+
}) // Using less points for Qgrid by default
|
|
64
|
+
},
|
|
65
|
+
IGridFormDataManager: {
|
|
66
|
+
providerCls: PointsGridFormDataProvider,
|
|
67
|
+
config: _makeImportant({
|
|
68
|
+
name: "igrid",
|
|
69
|
+
divisor: 0.2
|
|
70
|
+
}) // Using more points for interpolated grid by default
|
|
71
|
+
},
|
|
72
|
+
QPathFormDataManager: {
|
|
73
|
+
providerCls: PointsPathFormDataProvider,
|
|
74
|
+
config: _makeImportant({
|
|
75
|
+
name: "qpath"
|
|
76
|
+
})
|
|
77
|
+
},
|
|
78
|
+
IPathFormDataManager: {
|
|
79
|
+
providerCls: PointsPathFormDataProvider,
|
|
80
|
+
config: _makeImportant({
|
|
81
|
+
name: "ipath"
|
|
82
|
+
})
|
|
83
|
+
},
|
|
84
|
+
KPathFormDataManager: {
|
|
85
|
+
providerCls: PointsPathFormDataProvider,
|
|
86
|
+
config: _makeImportant({
|
|
87
|
+
name: "kpath"
|
|
88
|
+
})
|
|
89
|
+
},
|
|
90
|
+
ExplicitKPathFormDataManager: {
|
|
91
|
+
providerCls: ExplicitPointsPathFormDataProvider,
|
|
92
|
+
config: _makeImportant({
|
|
93
|
+
name: "explicitKPath"
|
|
94
|
+
})
|
|
95
|
+
},
|
|
96
|
+
ExplicitKPath2PIBAFormDataManager: {
|
|
97
|
+
providerCls: ExplicitPointsPath2PIBAFormDataProvider,
|
|
98
|
+
config: _makeImportant({
|
|
99
|
+
name: "explicitKPath2PIBA"
|
|
100
|
+
})
|
|
101
|
+
},
|
|
102
|
+
HubbardJContextManager: {
|
|
103
|
+
providerCls: HubbardJContextProvider,
|
|
104
|
+
config: _makeImportant({
|
|
105
|
+
name: "hubbard_j"
|
|
106
|
+
})
|
|
107
|
+
},
|
|
108
|
+
HubbardUContextManager: {
|
|
109
|
+
providerCls: HubbardUContextProvider,
|
|
110
|
+
config: _makeImportant({
|
|
111
|
+
name: "hubbard_u"
|
|
112
|
+
})
|
|
113
|
+
},
|
|
114
|
+
HubbardVContextManager: {
|
|
115
|
+
providerCls: HubbardVContextProvider,
|
|
116
|
+
config: _makeImportant({
|
|
117
|
+
name: "hubbard_v"
|
|
118
|
+
})
|
|
119
|
+
},
|
|
120
|
+
HubbardContextManagerLegacy: {
|
|
121
|
+
providerCls: HubbardContextProviderLegacy,
|
|
122
|
+
config: _makeImportant({
|
|
123
|
+
name: "hubbard_legacy"
|
|
124
|
+
})
|
|
125
|
+
},
|
|
126
|
+
// NEBFormDataManager context is stored under the same key (`input`) as InputDataManager contexts.
|
|
127
|
+
NEBFormDataManager: {
|
|
128
|
+
providerCls: NEBFormDataProvider,
|
|
129
|
+
config: _makeImportant({
|
|
130
|
+
name: "neb"
|
|
131
|
+
})
|
|
132
|
+
},
|
|
133
|
+
BoundaryConditionsFormDataManager: {
|
|
134
|
+
providerCls: BoundaryConditionsFormDataProvider,
|
|
135
|
+
config: _makeImportant({
|
|
136
|
+
name: "boundaryConditions"
|
|
137
|
+
})
|
|
138
|
+
},
|
|
139
|
+
MLSettingsDataManager: {
|
|
140
|
+
providerCls: MLSettingsContextProvider,
|
|
141
|
+
config: _makeImportant({
|
|
142
|
+
name: "mlSettings"
|
|
143
|
+
})
|
|
144
|
+
},
|
|
145
|
+
MLTrainTestSplitDataManager: {
|
|
146
|
+
providerCls: MLTrainTestSplitContextProvider,
|
|
147
|
+
config: _makeImportant({
|
|
148
|
+
name: "mlTrainTestSplit"
|
|
149
|
+
})
|
|
150
|
+
},
|
|
151
|
+
IonDynamicsContextProvider: {
|
|
152
|
+
providerCls: IonDynamicsContextProvider,
|
|
153
|
+
config: _makeImportant({
|
|
154
|
+
name: "dynamics"
|
|
155
|
+
})
|
|
156
|
+
},
|
|
157
|
+
CollinearMagnetizationDataManager: {
|
|
158
|
+
providerCls: CollinearMagnetizationContextProvider,
|
|
159
|
+
config: _makeImportant({
|
|
160
|
+
name: "collinearMagnetization"
|
|
161
|
+
})
|
|
162
|
+
},
|
|
163
|
+
NonCollinearMagnetizationDataManager: {
|
|
164
|
+
providerCls: NonCollinearMagnetizationContextProvider,
|
|
165
|
+
config: _makeImportant({
|
|
166
|
+
name: "nonCollinearMagnetization"
|
|
167
|
+
})
|
|
168
|
+
},
|
|
169
|
+
QEPWXInputDataManager: {
|
|
170
|
+
providerCls: QEPWXContextProvider,
|
|
171
|
+
config: {
|
|
172
|
+
name: "input"
|
|
173
|
+
}
|
|
174
|
+
},
|
|
175
|
+
QENEBInputDataManager: {
|
|
176
|
+
providerCls: QENEBContextProvider,
|
|
177
|
+
config: {
|
|
178
|
+
name: "input"
|
|
179
|
+
}
|
|
180
|
+
},
|
|
181
|
+
VASPInputDataManager: {
|
|
182
|
+
providerCls: VASPContextProvider,
|
|
183
|
+
config: {
|
|
184
|
+
name: "input"
|
|
185
|
+
}
|
|
186
|
+
},
|
|
187
|
+
VASPNEBInputDataManager: {
|
|
188
|
+
providerCls: VASPNEBContextProvider,
|
|
189
|
+
config: {
|
|
190
|
+
name: "input"
|
|
191
|
+
}
|
|
192
|
+
},
|
|
193
|
+
NWChemInputDataManager: {
|
|
194
|
+
providerCls: NWChemTotalEnergyContextProvider,
|
|
195
|
+
config: {
|
|
196
|
+
name: "input"
|
|
197
|
+
}
|
|
198
|
+
}
|
|
199
|
+
};
|
package/dist/enums.js
ADDED
|
@@ -0,0 +1,65 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
Object.defineProperty(exports, "__esModule", {
|
|
4
|
+
value: true
|
|
5
|
+
});
|
|
6
|
+
exports.WORKFLOW_STATUSES = exports.UNIT_TYPES = exports.UNIT_TAGS = exports.UNIT_STATUSES = exports.UNIT_NAME_INVALID_CHARS = exports.TAB_NAVIGATION_CONFIG = exports.IO_ID_COLUMN = void 0;
|
|
7
|
+
/**
|
|
8
|
+
* THIS ENUMS ARE SHARED WITH TESTS.
|
|
9
|
+
* DO NOT IMPORT ANYTHINGS IN THIS MODULE.
|
|
10
|
+
*/
|
|
11
|
+
|
|
12
|
+
const IO_ID_COLUMN = exports.IO_ID_COLUMN = "exabyteId";
|
|
13
|
+
const UNIT_TYPES = exports.UNIT_TYPES = {
|
|
14
|
+
// not currently used
|
|
15
|
+
convergence: "convergence",
|
|
16
|
+
exit: "exit",
|
|
17
|
+
// actively used
|
|
18
|
+
execution: "execution",
|
|
19
|
+
map: "map",
|
|
20
|
+
reduce: "reduce",
|
|
21
|
+
assignment: "assignment",
|
|
22
|
+
condition: "condition",
|
|
23
|
+
subworkflow: "subworkflow",
|
|
24
|
+
processing: "processing",
|
|
25
|
+
io: "io",
|
|
26
|
+
assertion: "assertion"
|
|
27
|
+
};
|
|
28
|
+
const UNIT_STATUSES = exports.UNIT_STATUSES = {
|
|
29
|
+
idle: "idle",
|
|
30
|
+
active: "active",
|
|
31
|
+
finished: "finished",
|
|
32
|
+
error: "error",
|
|
33
|
+
warning: "warning"
|
|
34
|
+
};
|
|
35
|
+
const UNIT_TAGS = exports.UNIT_TAGS = {
|
|
36
|
+
hasConvergenceParam: "hasConvergenceParam",
|
|
37
|
+
hasConvergenceResult: "hasConvergenceResult"
|
|
38
|
+
};
|
|
39
|
+
const WORKFLOW_STATUSES = exports.WORKFLOW_STATUSES = {
|
|
40
|
+
"up-to-date": "up-to-date",
|
|
41
|
+
outdated: "outdated"
|
|
42
|
+
};
|
|
43
|
+
const TAB_NAVIGATION_CONFIG = exports.TAB_NAVIGATION_CONFIG = {
|
|
44
|
+
overview: {
|
|
45
|
+
itemName: "Overview",
|
|
46
|
+
className: "",
|
|
47
|
+
href: "sw-overview"
|
|
48
|
+
},
|
|
49
|
+
importantSettings: {
|
|
50
|
+
itemName: "Important settings",
|
|
51
|
+
className: "",
|
|
52
|
+
href: "sw-important-settings"
|
|
53
|
+
},
|
|
54
|
+
detailedView: {
|
|
55
|
+
itemName: "Detailed view",
|
|
56
|
+
className: "",
|
|
57
|
+
href: "sw-detailed-view"
|
|
58
|
+
},
|
|
59
|
+
compute: {
|
|
60
|
+
itemName: "Compute",
|
|
61
|
+
className: "",
|
|
62
|
+
href: "sw-compute"
|
|
63
|
+
}
|
|
64
|
+
};
|
|
65
|
+
const UNIT_NAME_INVALID_CHARS = exports.UNIT_NAME_INVALID_CHARS = "/";
|
package/dist/index.js
ADDED
|
@@ -0,0 +1,64 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
Object.defineProperty(exports, "__esModule", {
|
|
4
|
+
value: true
|
|
5
|
+
});
|
|
6
|
+
Object.defineProperty(exports, "Subworkflow", {
|
|
7
|
+
enumerable: true,
|
|
8
|
+
get: function () {
|
|
9
|
+
return _subworkflows.Subworkflow;
|
|
10
|
+
}
|
|
11
|
+
});
|
|
12
|
+
Object.defineProperty(exports, "UNIT_STATUSES", {
|
|
13
|
+
enumerable: true,
|
|
14
|
+
get: function () {
|
|
15
|
+
return _enums.UNIT_STATUSES;
|
|
16
|
+
}
|
|
17
|
+
});
|
|
18
|
+
Object.defineProperty(exports, "UNIT_TYPES", {
|
|
19
|
+
enumerable: true,
|
|
20
|
+
get: function () {
|
|
21
|
+
return _enums.UNIT_TYPES;
|
|
22
|
+
}
|
|
23
|
+
});
|
|
24
|
+
Object.defineProperty(exports, "UnitFactory", {
|
|
25
|
+
enumerable: true,
|
|
26
|
+
get: function () {
|
|
27
|
+
return _factory.UnitFactory;
|
|
28
|
+
}
|
|
29
|
+
});
|
|
30
|
+
Object.defineProperty(exports, "Workflow", {
|
|
31
|
+
enumerable: true,
|
|
32
|
+
get: function () {
|
|
33
|
+
return _workflows.Workflow;
|
|
34
|
+
}
|
|
35
|
+
});
|
|
36
|
+
Object.defineProperty(exports, "builders", {
|
|
37
|
+
enumerable: true,
|
|
38
|
+
get: function () {
|
|
39
|
+
return _builders.builders;
|
|
40
|
+
}
|
|
41
|
+
});
|
|
42
|
+
Object.defineProperty(exports, "createSubworkflowByName", {
|
|
43
|
+
enumerable: true,
|
|
44
|
+
get: function () {
|
|
45
|
+
return _subworkflows.createSubworkflowByName;
|
|
46
|
+
}
|
|
47
|
+
});
|
|
48
|
+
Object.defineProperty(exports, "createWorkflowConfigs", {
|
|
49
|
+
enumerable: true,
|
|
50
|
+
get: function () {
|
|
51
|
+
return _workflows.createWorkflowConfigs;
|
|
52
|
+
}
|
|
53
|
+
});
|
|
54
|
+
Object.defineProperty(exports, "createWorkflows", {
|
|
55
|
+
enumerable: true,
|
|
56
|
+
get: function () {
|
|
57
|
+
return _workflows.createWorkflows;
|
|
58
|
+
}
|
|
59
|
+
});
|
|
60
|
+
var _enums = require("./enums");
|
|
61
|
+
var _subworkflows = require("./subworkflows");
|
|
62
|
+
var _builders = require("./units/builders");
|
|
63
|
+
var _factory = require("./units/factory");
|
|
64
|
+
var _workflows = require("./workflows");
|
package/dist/patch.js
ADDED
|
@@ -0,0 +1,19 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
Object.defineProperty(exports, "__esModule", {
|
|
4
|
+
value: true
|
|
5
|
+
});
|
|
6
|
+
Object.defineProperty(exports, "Template", {
|
|
7
|
+
enumerable: true,
|
|
8
|
+
get: function () {
|
|
9
|
+
return _ade.Template;
|
|
10
|
+
}
|
|
11
|
+
});
|
|
12
|
+
var _ade = require("@exabyte-io/ade.js");
|
|
13
|
+
var _providers = require("./context/providers");
|
|
14
|
+
// We patch the static providerRegistry here so that
|
|
15
|
+
// Template has all context providers available
|
|
16
|
+
// to it when creating workflows. It is then re-exported
|
|
17
|
+
// from WoDe for use downstream.
|
|
18
|
+
|
|
19
|
+
_ade.Template.setContextProvidersConfig(_providers.wodeProviders);
|
|
@@ -0,0 +1,35 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
Object.defineProperty(exports, "__esModule", {
|
|
4
|
+
value: true
|
|
5
|
+
});
|
|
6
|
+
exports.createConvergenceParameter = createConvergenceParameter;
|
|
7
|
+
var _non_uniform_kgrid = require("./non_uniform_kgrid");
|
|
8
|
+
var _parameter = require("./parameter");
|
|
9
|
+
var _uniform_kgrid = require("./uniform_kgrid");
|
|
10
|
+
function createConvergenceParameter({
|
|
11
|
+
name,
|
|
12
|
+
initialValue,
|
|
13
|
+
increment
|
|
14
|
+
}) {
|
|
15
|
+
switch (name) {
|
|
16
|
+
case "N_k":
|
|
17
|
+
return new _uniform_kgrid.UniformKGridConvergence({
|
|
18
|
+
name,
|
|
19
|
+
initialValue,
|
|
20
|
+
increment
|
|
21
|
+
});
|
|
22
|
+
case "N_k_nonuniform":
|
|
23
|
+
return new _non_uniform_kgrid.NonUniformKGridConvergence({
|
|
24
|
+
name,
|
|
25
|
+
initialValue,
|
|
26
|
+
increment
|
|
27
|
+
});
|
|
28
|
+
default:
|
|
29
|
+
return new _parameter.ConvergenceParameter({
|
|
30
|
+
name,
|
|
31
|
+
initialValue,
|
|
32
|
+
increment
|
|
33
|
+
});
|
|
34
|
+
}
|
|
35
|
+
}
|
|
@@ -0,0 +1,31 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
Object.defineProperty(exports, "__esModule", {
|
|
4
|
+
value: true
|
|
5
|
+
});
|
|
6
|
+
exports.NonUniformKGridConvergence = void 0;
|
|
7
|
+
var _parameter = require("./parameter");
|
|
8
|
+
class NonUniformKGridConvergence extends _parameter.ConvergenceParameter {
|
|
9
|
+
get increment() {
|
|
10
|
+
return `[${this.initialValue}[i] + math.floor(iteration * ${this._increment} * float(context['kgrid']['reciprocalVectorRatios'][i])) for i in range(3)]`;
|
|
11
|
+
}
|
|
12
|
+
get unitContext() {
|
|
13
|
+
return {
|
|
14
|
+
kgrid: {
|
|
15
|
+
dimensions: [`{{${this.name}[0]}}`, `{{${this.name}[1]}}`, `{{${this.name}[2]}}`],
|
|
16
|
+
shifts: [0, 0, 0]
|
|
17
|
+
},
|
|
18
|
+
isKgridEdited: true,
|
|
19
|
+
isUsingJinjaVariables: true
|
|
20
|
+
};
|
|
21
|
+
}
|
|
22
|
+
|
|
23
|
+
// eslint-disable-next-line class-methods-use-this
|
|
24
|
+
useVariablesFromUnitContext(flowchartId) {
|
|
25
|
+
return [{
|
|
26
|
+
scope: flowchartId,
|
|
27
|
+
name: "context"
|
|
28
|
+
}];
|
|
29
|
+
}
|
|
30
|
+
}
|
|
31
|
+
exports.NonUniformKGridConvergence = NonUniformKGridConvergence;
|