@mat3ra/esse 2026.4.4-0 → 2026.5.18-0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +47 -2
- package/dist/js/esse/JSONSchemasInterface.js +1 -1
- package/dist/js/esse/JSONSchemasInterfaceServer.js +2 -3
- package/dist/js/esse/schemaUtils.js +1 -2
- package/dist/js/esse/utils.js +4 -5
- package/dist/js/example/job.json +6 -4
- package/dist/js/example/software/application.json +3 -2
- package/dist/js/example/workflow/subworkflow.json +6 -4
- package/dist/js/example/workflow/unit/execution.json +3 -2
- package/dist/js/example/workflow.json +6 -4
- package/dist/js/schema/job.json +12 -0
- package/dist/js/schema/properties_directory/non_scalar/workflow.json +12 -0
- package/dist/js/schema/property/holder.json +12 -0
- package/dist/js/schema/software/application.json +4 -0
- package/dist/js/schema/software/application_with_build_config.json +4 -0
- package/dist/js/schema/software_directory/modeling/deepmd.json +4 -0
- package/dist/js/schema/software_directory/modeling/lammps.json +4 -0
- package/dist/js/schema/software_directory/modeling/nwchem.json +4 -0
- package/dist/js/schema/software_directory/modeling/unit/execution.json +4 -0
- package/dist/js/schema/software_directory/modeling/vasp.json +4 -0
- package/dist/js/schema/software_directory/scripting/jupyter_lab.json +4 -0
- package/dist/js/schema/software_directory/scripting/python.json +4 -0
- package/dist/js/schema/software_directory/scripting/shell.json +4 -0
- package/dist/js/schema/software_directory/scripting/unit/execution.json +4 -0
- package/dist/js/schema/workflow/subworkflow/unit.json +4 -0
- package/dist/js/schema/workflow/subworkflow.json +8 -0
- package/dist/js/schema/workflow/unit/execution.json +4 -0
- package/dist/js/schema/workflow/unit.json +4 -0
- package/dist/js/schema/workflow.json +12 -0
- package/dist/js/schemas.json +1 -1
- package/dist/js/scripts/compileTs.js +1 -1
- package/dist/js/scripts/setSchemaIds.js +1 -1
- package/dist/js/types.d.ts +112 -0
- package/dist/js/types.js +5 -5
- package/dist/js/utils/ajv.js +4 -5
- package/dist/js/utils/common.js +2 -3
- package/dist/js/utils/filesystem.js +2 -3
- package/example/software/application.json +3 -2
- package/package.json +14 -14
- package/schema/software/application.json +4 -0
- package/src/html/app.js +309 -0
- package/src/html/index.html +54 -0
- package/src/html/style.css +265 -0
package/src/html/app.js
ADDED
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'use strict';
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// ── Monaco bootstrap ──────────────────────────────────────────────────────────
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let monacoEditor = null;
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let pendingContent = null;
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require.config({ paths: { vs: 'https://cdn.jsdelivr.net/npm/monaco-editor@0.44.0/min/vs' } });
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require(['vs/editor/editor.main'], function () {
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monacoEditor = monaco.editor.create(document.getElementById('monaco-editor'), {
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value: '',
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language: 'json',
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theme: 'vs-dark',
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readOnly: true,
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minimap: { enabled: true },
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scrollBeyondLastLine: false,
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fontSize: 13,
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lineNumbers: 'on',
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wordWrap: 'off',
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automaticLayout: true,
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renderLineHighlight: 'all',
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});
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if (pendingContent !== null) {
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applyContent(pendingContent);
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pendingContent = null;
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}
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});
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function applyContent(text) {
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if (!monacoEditor) { pendingContent = text; return; }
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document.getElementById('welcome').style.display = 'none';
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document.getElementById('monaco-editor').style.display = 'block';
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monacoEditor.setValue(text);
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monacoEditor.revealLine(1);
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}
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// ── State ─────────────────────────────────────────────────────────────────────
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let allFiles = [];
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let expandedSet = new Set(); // set of folder paths that are expanded
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let selectedFile = null; // currently selected file path
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// ── Build nested tree object from flat path list ──────────────────────────────
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function pathsToTree(paths) {
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const root = {};
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paths.forEach(p => {
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const parts = p.split('/');
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let node = root;
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for (let i = 0; i < parts.length; i++) {
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const part = parts[i];
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if (i === parts.length - 1) {
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if (!node.__files) node.__files = [];
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node.__files.push({ name: part, path: p });
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} else {
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if (!node[part]) node[part] = {};
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node = node[part];
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}
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}
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});
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return root;
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}
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// ── Render tree (lazy — children only rendered when folder is opened) ─────────
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function renderTree(container, node, depth, folderPath) {
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// Folders first (alphabetical)
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const folderKeys = Object.keys(node).filter(k => k !== '__files').sort();
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folderKeys.forEach(key => {
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const fp = folderPath ? `${folderPath}/${key}` : key;
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const isOpen = expandedSet.has(fp);
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const row = document.createElement('div');
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row.className = 't-item folder';
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row.style.paddingLeft = `${depth * 12 + 4}px`;
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row.dataset.fp = fp;
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row.innerHTML =
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`<span class="t-chevron">${isOpen ? '▾' : '▸'}</span>` +
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`<span class="t-icon" style="color:var(--icon-folder)">📁</span>` +
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`<span class="t-label">${escHtml(key)}</span>`;
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const children = document.createElement('div');
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children.className = 't-children' + (isOpen ? ' open' : '');
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children.dataset.rendered = isOpen ? 'true' : 'false';
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row.addEventListener('click', e => {
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e.stopPropagation();
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const opening = !children.classList.contains('open');
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children.classList.toggle('open', opening);
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row.querySelector('.t-chevron').textContent = opening ? '▾' : '▸';
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if (opening) {
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expandedSet.add(fp);
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if (children.dataset.rendered === 'false') {
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renderTree(children, node[key], depth + 1, fp);
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children.dataset.rendered = 'true';
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}
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} else {
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expandedSet.delete(fp);
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}
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});
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if (isOpen && children.dataset.rendered === 'false') {
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renderTree(children, node[key], depth + 1, fp);
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children.dataset.rendered = 'true';
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}
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container.appendChild(row);
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container.appendChild(children);
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});
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// Then files
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if (node.__files) {
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node.__files
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.slice()
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.sort((a, b) => a.name.localeCompare(b.name))
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.forEach(({ name, path }) => {
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const row = document.createElement('div');
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row.className = 't-item file' + (path === selectedFile ? ' selected' : '');
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row.style.paddingLeft = `${depth * 12 + 22}px`;
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row.dataset.path = path;
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row.innerHTML =
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`<span class="t-icon">📄</span>` +
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`<span class="t-label">${escHtml(name)}</span>`;
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row.addEventListener('click', () => openFile(path));
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container.appendChild(row);
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});
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}
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}
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// ── Render flat search results ────────────────────────────────────────────────
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function renderSearch(container, matches, query) {
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if (matches.length === 0) {
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container.innerHTML = '<div class="tree-msg">No results found.</div>';
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return;
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}
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document.getElementById('status-count').textContent = `${matches.length} result${matches.length !== 1 ? 's' : ''}`;
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matches.forEach(path => {
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const fileName = path.split('/').pop();
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const dirPart = path.slice(0, path.length - fileName.length - 1);
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const row = document.createElement('div');
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row.className = 't-item file flat-result' + (path === selectedFile ? ' selected' : '');
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row.style.paddingLeft = '8px';
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row.dataset.path = path;
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const hl = s => hlMatch(s, query);
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row.innerHTML =
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`<span class="t-icon" style="flex-shrink:0">📄</span>` +
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`<span class="t-label">` +
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`<span class="t-filename">${hl(fileName)}</span>` +
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`<span class="t-filepath">${hl(dirPart)}</span>` +
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`</span>`;
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row.addEventListener('click', () => openFile(path));
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container.appendChild(row);
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});
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}
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// ── Highlight query match in text ─────────────────────────────────────────────
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function hlMatch(text, query) {
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if (!query) return escHtml(text);
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const idx = text.toLowerCase().indexOf(query.toLowerCase());
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if (idx === -1) return escHtml(text);
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return escHtml(text.slice(0, idx)) +
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`<mark>${escHtml(text.slice(idx, idx + query.length))}</mark>` +
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escHtml(text.slice(idx + query.length));
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}
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function escHtml(s) {
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return s.replace(/&/g,'&').replace(/</g,'<').replace(/>/g,'>');
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}
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// ── Pre-expand folders up to a given depth ────────────────────────────────────
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function preExpand(node, depth, folderPath, maxDepth) {
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if (depth >= maxDepth) return;
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Object.keys(node)
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.filter(k => k !== '__files')
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.forEach(key => {
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const fp = folderPath ? `${folderPath}/${key}` : key;
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expandedSet.add(fp);
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preExpand(node[key], depth + 1, fp, maxDepth);
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});
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}
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// ── Rebuild the whole tree pane ───────────────────────────────────────────────
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function rebuildTree(query) {
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const container = document.getElementById('file-tree');
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container.innerHTML = '';
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if (!query) {
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document.getElementById('status-count').textContent =
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`${allFiles.length} file${allFiles.length !== 1 ? 's' : ''}`;
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const tree = pathsToTree(allFiles);
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renderTree(container, tree, 0, '');
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} else {
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const q = query.toLowerCase();
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const matches = allFiles.filter(f => f.toLowerCase().includes(q));
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renderSearch(container, matches, query);
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}
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}
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// ── Open / display a file ─────────────────────────────────────────────────────
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function openFile(path) {
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selectedFile = path;
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// Highlight in tree (works for both tree and search views)
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document.querySelectorAll('.t-item.selected').forEach(el => el.classList.remove('selected'));
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const el = document.querySelector(`.t-item.file[data-path="${CSS.escape(path)}"]`);
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if (el) el.classList.add('selected');
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// Tab
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const fname = path.split('/').pop();
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document.getElementById('tabbar').innerHTML =
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`<div class="tab active"><span>📄</span><span>${escHtml(fname)}</span></div>`;
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// Breadcrumb
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const parts = path.split('/');
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document.getElementById('breadcrumb').innerHTML =
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parts.map((p, i) =>
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i < parts.length - 1
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? `<span>${escHtml(p)}</span><span class="bc-sep">›</span>`
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: `<span style="color:var(--text-primary)">${escHtml(p)}</span>`
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).join('');
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// Status
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document.getElementById('status-path').textContent = path;
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// Update URL hash for deep-linking
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history.replaceState(null, '', '#' + path);
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// Fetch
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fetch(path)
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.then(r => { if (!r.ok) throw new Error('HTTP ' + r.status); return r.json(); })
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.then(data => applyContent(JSON.stringify(data, null, 2)))
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.catch(err => applyContent(`// Error loading file\n// ${err.message}`));
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}
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// ── Expand all ancestor folders for a given file path ────────────────────────
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function expandToFile(path) {
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const parts = path.split('/');
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let folderPath = '';
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for (let i = 0; i < parts.length - 1; i++) {
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folderPath = folderPath ? `${folderPath}/${parts[i]}` : parts[i];
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expandedSet.add(folderPath);
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}
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}
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// ── Search handler ────────────────────────────────────────────────────────────
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let searchTimer = null;
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document.getElementById('search-input').addEventListener('input', function () {
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clearTimeout(searchTimer);
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searchTimer = setTimeout(() => rebuildTree(this.value.trim()), 150);
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});
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// ── Resizer ───────────────────────────────────────────────────────────────────
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(function () {
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const resizer = document.getElementById('resizer');
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const sidebar = document.getElementById('sidebar');
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let dragging = false, startX = 0, startW = 0;
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resizer.addEventListener('mousedown', e => {
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dragging = true; startX = e.clientX; startW = sidebar.offsetWidth;
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resizer.classList.add('active');
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document.body.style.cursor = 'col-resize';
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document.body.style.userSelect = 'none';
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e.preventDefault();
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});
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document.addEventListener('mousemove', e => {
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if (!dragging) return;
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const w = Math.max(120, Math.min(window.innerWidth * 0.6, startW + e.clientX - startX));
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sidebar.style.width = w + 'px';
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if (monacoEditor) monacoEditor.layout();
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});
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document.addEventListener('mouseup', () => {
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if (!dragging) return;
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dragging = false;
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resizer.classList.remove('active');
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<span>schemas.mat3ra.com</span>
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<div id="welcome">
|
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<h2>ESSEntial Source of Schemas and Examples (ESSE)</h2>
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<p>Select a schema from the explorer on the left, or start typing to search.</p>
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</div>
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<!-- Monaco Editor (loaded from CDN) -->
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<script src="https://cdn.jsdelivr.net/npm/monaco-editor@0.44.0/min/vs/loader.min.js"></script>
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:root {
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--bg-editor: #1e1e1e;
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--bg-inactive: #2d2d2d;
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--bg-selected: #094771;
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--text-secondary: #abb2bf;
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--text-muted: #858585;
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--border: #3e3e3e;
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--accent: #0078d4;
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--icon-folder: #dcb67a;
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}
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* { box-sizing: border-box; margin: 0; padding: 0; }
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body {
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font-family: 'Segoe UI', system-ui, -apple-system, sans-serif;
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background: var(--bg-editor);
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}
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/* ── Title bar ───────────────────────────────────────────── */
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#titlebar {
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height: 30px;
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background: #323233;
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color: var(--text-muted);
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gap: 8px;
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}
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#titlebar .app-name { color: var(--text-primary); font-weight: 500; }
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/* ── Layout ──────────────────────────────────────────────── */
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#workspace {
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display: flex;
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overflow: hidden;
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}
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/* ── Sidebar ─────────────────────────────────────────────── */
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#sidebar {
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width: 280px;
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min-width: 120px;
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max-width: 60vw;
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background: var(--bg-sidebar);
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}
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#sidebar-title {
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padding: 10px 12px 6px;
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font-size: 11px;
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}
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}
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width: 100%;
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background: #3c3c3c;
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border: 1px solid #555;
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border-radius: 3px;
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color: var(--text-primary);
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padding: 5px 8px 5px 30px;
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outline: none;
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background-image: url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%23858585'%3E%3Cpath d='M11.742 10.344a6.5 6.5 0 1 0-1.397 1.398h-.001l3.85 3.85a1 1 0 0 0 1.415-1.414l-3.85-3.85a1.007 1.007 0 0 0-.115-.1zM12 6.5a5.5 5.5 0 1 1-11 0 5.5 5.5 0 0 1 11 0z'/%3E%3C/svg%3E");
|
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background-repeat: no-repeat;
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background-position: 8px 50%;
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background-size: 14px 14px;
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}
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#search-input:focus { border-color: var(--accent); }
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#file-tree {
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flex: 1;
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overflow-y: auto;
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font-size: 13px;
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line-height: 1;
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}
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#file-tree::-webkit-scrollbar { width: 6px; }
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#file-tree::-webkit-scrollbar-thumb { background: #424242; border-radius: 3px; }
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|
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#file-tree::-webkit-scrollbar-track { background: transparent; }
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|
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|
|
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|
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/* ── Tree items ──────────────────────────────────────────── */
|
|
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|
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|
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display: flex;
|
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|
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height: 22px;
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cursor: pointer;
|
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|
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white-space: nowrap;
|
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|
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padding-right: 8px;
|
|
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|
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gap: 3px;
|
|
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|
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}
|
|
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|
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.t-item:hover { background: var(--bg-hover); }
|
|
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|
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.t-item.selected { background: var(--bg-selected); }
|
|
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|
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|
|
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|
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.t-chevron {
|
|
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|
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flex-shrink: 0;
|
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|
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width: 16px;
|
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|
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text-align: center;
|
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|
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font-size: 9px;
|
|
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|
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|
|
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|
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transition: transform 0.1s;
|
|
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|
+
}
|
|
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|
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.t-icon { flex-shrink: 0; font-size: 14px; width: 18px; text-align: center; }
|
|
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|
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.t-label { flex: 1; overflow: hidden; text-overflow: ellipsis; }
|
|
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|
+
|
|
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|
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.t-item.folder .t-label { color: var(--text-primary); }
|
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|
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.t-item.file .t-label { color: var(--icon-json); }
|
|
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|
+
|
|
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|
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.t-children { display: none; }
|
|
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|
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.t-children.open { display: block; }
|
|
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|
+
|
|
135
|
+
/* search result: show full path */
|
|
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|
+
.t-item.flat-result .t-label {
|
|
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|
+
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|
|
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|
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|
|
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|
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|
|
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|
+
padding: 2px 0;
|
|
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|
+
height: auto;
|
|
142
|
+
}
|
|
143
|
+
.t-item.flat-result { height: auto; min-height: 22px; align-items: flex-start; padding-top: 3px; padding-bottom: 3px; }
|
|
144
|
+
.t-item.flat-result .t-filename { color: var(--icon-json); font-weight: 500; }
|
|
145
|
+
.t-item.flat-result .t-filepath { font-size: 11px; color: var(--text-muted); }
|
|
146
|
+
.t-item.flat-result mark { background: transparent; color: #e6b422; font-weight: 700; }
|
|
147
|
+
|
|
148
|
+
/* no-results / loading */
|
|
149
|
+
.tree-msg {
|
|
150
|
+
padding: 12px;
|
|
151
|
+
font-size: 12px;
|
|
152
|
+
color: var(--text-muted);
|
|
153
|
+
}
|
|
154
|
+
|
|
155
|
+
/* ── Resizer ─────────────────────────────────────────────── */
|
|
156
|
+
#resizer {
|
|
157
|
+
width: 4px;
|
|
158
|
+
background: transparent;
|
|
159
|
+
cursor: col-resize;
|
|
160
|
+
flex-shrink: 0;
|
|
161
|
+
transition: background 0.15s;
|
|
162
|
+
}
|
|
163
|
+
#resizer:hover, #resizer.active { background: var(--accent); }
|
|
164
|
+
|
|
165
|
+
/* ── Editor area ─────────────────────────────────────────── */
|
|
166
|
+
#editor-area {
|
|
167
|
+
flex: 1;
|
|
168
|
+
display: flex;
|
|
169
|
+
flex-direction: column;
|
|
170
|
+
overflow: hidden;
|
|
171
|
+
min-width: 0;
|
|
172
|
+
}
|
|
173
|
+
|
|
174
|
+
/* Tab bar */
|
|
175
|
+
#tabbar {
|
|
176
|
+
height: 35px;
|
|
177
|
+
background: var(--bg-sidebar);
|
|
178
|
+
border-bottom: 1px solid var(--border);
|
|
179
|
+
display: flex;
|
|
180
|
+
align-items: flex-end;
|
|
181
|
+
flex-shrink: 0;
|
|
182
|
+
overflow: hidden;
|
|
183
|
+
}
|
|
184
|
+
.tab {
|
|
185
|
+
height: 35px;
|
|
186
|
+
padding: 0 12px;
|
|
187
|
+
font-size: 13px;
|
|
188
|
+
display: flex;
|
|
189
|
+
align-items: center;
|
|
190
|
+
gap: 5px;
|
|
191
|
+
background: var(--bg-inactive);
|
|
192
|
+
border-right: 1px solid var(--border);
|
|
193
|
+
white-space: nowrap;
|
|
194
|
+
overflow: hidden;
|
|
195
|
+
text-overflow: ellipsis;
|
|
196
|
+
color: var(--text-muted);
|
|
197
|
+
max-width: 240px;
|
|
198
|
+
}
|
|
199
|
+
.tab.active {
|
|
200
|
+
background: var(--bg-editor);
|
|
201
|
+
color: var(--text-primary);
|
|
202
|
+
border-top: 1px solid var(--accent);
|
|
203
|
+
height: 36px;
|
|
204
|
+
}
|
|
205
|
+
|
|
206
|
+
/* Breadcrumb */
|
|
207
|
+
#breadcrumb {
|
|
208
|
+
height: 22px;
|
|
209
|
+
padding: 0 14px;
|
|
210
|
+
font-size: 12px;
|
|
211
|
+
color: var(--text-muted);
|
|
212
|
+
background: var(--bg-editor);
|
|
213
|
+
border-bottom: 1px solid var(--border);
|
|
214
|
+
display: flex;
|
|
215
|
+
align-items: center;
|
|
216
|
+
flex-shrink: 0;
|
|
217
|
+
overflow: hidden;
|
|
218
|
+
gap: 2px;
|
|
219
|
+
}
|
|
220
|
+
.bc-sep { opacity: 0.4; margin: 0 2px; }
|
|
221
|
+
|
|
222
|
+
/* Editor container */
|
|
223
|
+
#editor-wrap {
|
|
224
|
+
flex: 1;
|
|
225
|
+
position: relative;
|
|
226
|
+
overflow: hidden;
|
|
227
|
+
}
|
|
228
|
+
|
|
229
|
+
#monaco-editor {
|
|
230
|
+
position: absolute;
|
|
231
|
+
inset: 0;
|
|
232
|
+
display: none;
|
|
233
|
+
}
|
|
234
|
+
|
|
235
|
+
/* Welcome */
|
|
236
|
+
#welcome {
|
|
237
|
+
position: absolute;
|
|
238
|
+
inset: 0;
|
|
239
|
+
display: flex;
|
|
240
|
+
flex-direction: column;
|
|
241
|
+
align-items: center;
|
|
242
|
+
justify-content: center;
|
|
243
|
+
gap: 10px;
|
|
244
|
+
color: var(--text-muted);
|
|
245
|
+
}
|
|
246
|
+
#welcome h2 {
|
|
247
|
+
font-size: 22px;
|
|
248
|
+
font-weight: 300;
|
|
249
|
+
color: var(--text-secondary);
|
|
250
|
+
}
|
|
251
|
+
#welcome p { font-size: 13px; }
|
|
252
|
+
|
|
253
|
+
/* Status bar */
|
|
254
|
+
#statusbar {
|
|
255
|
+
height: 22px;
|
|
256
|
+
background: var(--accent);
|
|
257
|
+
color: #fff;
|
|
258
|
+
display: flex;
|
|
259
|
+
align-items: center;
|
|
260
|
+
padding: 0 14px;
|
|
261
|
+
font-size: 12px;
|
|
262
|
+
flex-shrink: 0;
|
|
263
|
+
gap: 16px;
|
|
264
|
+
}
|
|
265
|
+
#status-path { flex: 1; overflow: hidden; text-overflow: ellipsis; white-space: nowrap; }
|