@mat3ra/esse 2025.4.15-0 → 2025.4.22-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (143) hide show
  1. package/.pre-commit-config.yaml +3 -6
  2. package/dist/js/example/core/abstract/vector_boolean_3d.json +5 -0
  3. package/dist/js/example/material.json +11 -11
  4. package/dist/js/example/properties_directory/structural/basis/atomic_coordinates.json +18 -21
  5. package/dist/js/example/properties_directory/structural/basis/atomic_elements.json +10 -0
  6. package/dist/js/example/properties_directory/structural/basis/atomic_label.json +4 -0
  7. package/dist/js/example/properties_directory/structural/basis/atomic_labels.json +10 -0
  8. package/dist/js/example/properties_directory/structural/lattice.json +11 -11
  9. package/dist/js/schema/{3pse → apse}/db/nist_jarvis/2024.3.13/atoms.json +1 -1
  10. package/dist/js/schema/{3pse → apse}/db/nist_jarvis/2024.3.13/db_entry.json +1 -1
  11. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/atomic_positions.json +1 -1
  12. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/atomic_species.json +1 -1
  13. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/cell.json +1 -1
  14. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/cell_parameters.json +1 -1
  15. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/control.json +1 -1
  16. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/electrons.json +1 -1
  17. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/hubbard.json +1 -1
  18. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/ions.json +1 -1
  19. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/k_points.json +1 -1
  20. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/system.json +1 -1
  21. package/dist/js/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x.json +1 -1
  22. package/dist/js/schema/core/abstract/coordinate_3d.json +11 -0
  23. package/dist/js/schema/core/abstract/kpoint.json +12 -0
  24. package/dist/js/schema/core/abstract/{3d_tensor.json → matrix_3x3.json} +2 -2
  25. package/dist/js/schema/core/abstract/{point.json → vector_3d.json} +2 -2
  26. package/dist/js/schema/core/abstract/{vector.json → vector_boolean_3d.json} +2 -12
  27. package/dist/js/schema/core/primitive/array_of_ids.json +7 -1
  28. package/dist/js/schema/core/primitive/object_with_id.json +16 -0
  29. package/dist/js/schema/core/primitive/object_with_id_and_value.json +20 -0
  30. package/dist/js/schema/core/reusable/atomic_scalars.json +6 -0
  31. package/dist/js/schema/core/reusable/atomic_string.json +21 -0
  32. package/dist/js/schema/core/reusable/atomic_vector.json +28 -0
  33. package/dist/js/schema/core/reusable/atomic_vectors.json +15 -24
  34. package/dist/js/schema/core/reusable/band_gap.json +4 -2
  35. package/dist/js/schema/material.json +113 -103
  36. package/dist/js/schema/properties_directory/non_scalar/band_gaps.json +6 -3
  37. package/dist/js/schema/properties_directory/non_scalar/stress_tensor.json +1 -1
  38. package/dist/js/schema/properties_directory/structural/atomic_forces.json +15 -24
  39. package/dist/js/schema/properties_directory/structural/basis/atomic_constraint.json +34 -0
  40. package/dist/js/schema/properties_directory/structural/basis/atomic_constraints.json +30 -45
  41. package/dist/js/schema/properties_directory/structural/basis/atomic_constraints_property.json +53 -0
  42. package/dist/js/schema/properties_directory/structural/basis/atomic_coordinate.json +18 -28
  43. package/dist/js/schema/properties_directory/structural/basis/atomic_coordinates.json +26 -59
  44. package/dist/js/schema/properties_directory/structural/basis/atomic_element.json +7 -12
  45. package/dist/js/schema/properties_directory/structural/basis/atomic_elements.json +27 -0
  46. package/dist/js/schema/properties_directory/structural/basis/atomic_label.json +27 -10
  47. package/dist/js/schema/properties_directory/structural/basis/atomic_labels.json +42 -0
  48. package/dist/js/schema/properties_directory/structural/basis/bonds.json +7 -1
  49. package/dist/js/schema/properties_directory/structural/basis/units_enum.json +10 -0
  50. package/dist/js/schema/properties_directory/structural/basis.json +63 -52
  51. package/dist/js/schema/properties_directory/structural/lattice/lattice_vectors.json +18 -50
  52. package/dist/js/schema/properties_directory/structural/lattice/units/angle_enum.json +10 -0
  53. package/dist/js/schema/properties_directory/structural/lattice/units/length_enum.json +10 -0
  54. package/dist/js/schema/properties_directory/structural/lattice/vectors/units_enum.json +10 -0
  55. package/dist/js/schema/{core/abstract/3d_vector_basis.json → properties_directory/structural/lattice/vectors.json} +19 -5
  56. package/dist/js/schema/properties_directory/structural/lattice.json +50 -51
  57. package/dist/js/schema/properties_directory/structural/magnetic_moments.json +15 -24
  58. package/dist/js/schema/properties_directory/structural/molecular_pattern.json +21 -3
  59. package/dist/js/schema/properties_directory/structural/patterns/functional_group.json +7 -1
  60. package/dist/js/schema/properties_directory/structural/patterns/ring.json +7 -1
  61. package/dist/js/schema/properties_directory/structural/patterns/special_bond.json +7 -1
  62. package/dist/js/schemas.json +1 -1
  63. package/dist/js/types.d.ts +376 -263
  64. package/dist/js/types.js +1 -1
  65. package/example/core/abstract/vector_boolean_3d.json +5 -0
  66. package/example/properties_directory/structural/basis/atomic_coordinates.json +18 -21
  67. package/example/properties_directory/structural/basis/atomic_elements.json +10 -0
  68. package/example/properties_directory/structural/basis/atomic_label.json +4 -0
  69. package/example/properties_directory/structural/basis/atomic_labels.json +10 -0
  70. package/example/properties_directory/structural/lattice.json +12 -2
  71. package/package.json +3 -3
  72. package/schema/{3pse → apse}/db/nist_jarvis/2024.3.13/atoms.json +1 -1
  73. package/schema/{3pse → apse}/db/nist_jarvis/2024.3.13/db_entry.json +1 -1
  74. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/atomic_positions.json +1 -1
  75. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/atomic_species.json +1 -1
  76. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/cell.json +1 -1
  77. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/cell_parameters.json +1 -1
  78. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/control.json +1 -1
  79. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/electrons.json +1 -1
  80. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/hubbard.json +1 -1
  81. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/ions.json +1 -1
  82. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/k_points.json +1 -1
  83. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x/system.json +1 -1
  84. package/schema/{3pse → apse}/file/applications/espresso/7.2/pw.x.json +1 -1
  85. package/schema/core/abstract/coordinate_3d.json +10 -0
  86. package/schema/core/abstract/{3d_tensor.json → matrix_3x3.json} +2 -2
  87. package/schema/core/abstract/{point.json → vector_3d.json} +2 -2
  88. package/schema/core/abstract/{vector.json → vector_boolean_3d.json} +2 -5
  89. package/schema/core/primitive/array_of_ids.json +2 -8
  90. package/schema/core/primitive/object_with_id.json +17 -0
  91. package/schema/core/primitive/object_with_id_and_value.json +22 -0
  92. package/schema/core/reusable/atomic_string.json +15 -0
  93. package/schema/core/reusable/atomic_vector.json +15 -0
  94. package/schema/core/reusable/atomic_vectors.json +1 -11
  95. package/schema/core/reusable/band_gap.json +2 -2
  96. package/schema/core/reusable/kpoint.json +11 -0
  97. package/schema/properties_directory/non-scalar/band_gaps.json +1 -1
  98. package/schema/properties_directory/non-scalar/stress_tensor.json +1 -1
  99. package/schema/properties_directory/structural/basis/atomic_constraint.json +17 -0
  100. package/schema/properties_directory/structural/basis/atomic_constraints.json +4 -11
  101. package/schema/properties_directory/structural/basis/atomic_constraints_property.json +17 -0
  102. package/schema/properties_directory/structural/basis/atomic_coordinate.json +8 -6
  103. package/schema/properties_directory/structural/basis/atomic_coordinates.json +6 -18
  104. package/schema/properties_directory/structural/basis/atomic_element.json +5 -20
  105. package/schema/properties_directory/structural/basis/atomic_elements.json +10 -0
  106. package/schema/properties_directory/structural/basis/atomic_label.json +20 -6
  107. package/schema/properties_directory/structural/basis/atomic_labels.json +10 -0
  108. package/schema/properties_directory/structural/basis/units_enum.json +10 -0
  109. package/schema/properties_directory/structural/basis.json +4 -19
  110. package/schema/properties_directory/structural/lattice/units/angle_enum.json +10 -0
  111. package/schema/properties_directory/structural/lattice/units/length_enum.json +10 -0
  112. package/schema/properties_directory/structural/lattice/units.json +18 -0
  113. package/schema/properties_directory/structural/lattice/vectors/units_enum.json +10 -0
  114. package/schema/properties_directory/structural/lattice/vectors.json +33 -0
  115. package/schema/properties_directory/structural/lattice.json +41 -10
  116. package/dist/js/example/core/abstract/3d_vector_basis.json +0 -17
  117. package/dist/js/example/core/primitive/3d_lattice.json +0 -8
  118. package/dist/js/example/properties_directory/structural/lattice/lattice_bravais.json +0 -13
  119. package/dist/js/schema/core/primitive/3d_lattice.json +0 -40
  120. package/dist/js/schema/core/reusable/atomic_strings.json +0 -19
  121. package/dist/js/schema/properties_directory/structural/lattice/lattice_bravais.json +0 -87
  122. package/example/core/abstract/3d_vector_basis.json +0 -17
  123. package/example/core/primitive/3d_lattice.json +0 -8
  124. package/example/properties_directory/structural/lattice/lattice_bravais.json +0 -13
  125. package/schema/core/abstract/3d_vector_basis.json +0 -25
  126. package/schema/core/primitive/3d_lattice.json +0 -40
  127. package/schema/core/reusable/atomic_strings.json +0 -17
  128. package/schema/properties_directory/structural/lattice/lattice_bravais.json +0 -36
  129. package/schema/properties_directory/structural/lattice/lattice_vectors.json +0 -21
  130. /package/dist/js/example/{3pse → apse}/db/nist_jarvis/2024.3.13/db_entry.json +0 -0
  131. /package/dist/js/example/{3pse → apse}/file/applications/espresso/7.2/pw.x.json +0 -0
  132. /package/dist/js/example/core/abstract/{point.json → coordinate_3d.json} +0 -0
  133. /package/dist/js/example/core/abstract/{3d_tensor.json → matrix_3x3.json} +0 -0
  134. /package/dist/js/example/core/abstract/{vector.json → vector_3d.json} +0 -0
  135. /package/dist/js/example/properties_directory/structural/basis/{atomic_constraints.json → atomic_constraints_property.json} +0 -0
  136. /package/dist/js/example/properties_directory/structural/lattice/{lattice_vectors.json → vectors.json} +0 -0
  137. /package/example/{3pse → apse}/db/nist_jarvis/2024.3.13/db_entry.json +0 -0
  138. /package/example/{3pse → apse}/file/applications/espresso/7.2/pw.x.json +0 -0
  139. /package/example/core/abstract/{point.json → coordinate_3d.json} +0 -0
  140. /package/example/core/abstract/{3d_tensor.json → matrix_3x3.json} +0 -0
  141. /package/example/core/abstract/{vector.json → vector_3d.json} +0 -0
  142. /package/example/properties_directory/structural/basis/{atomic_constraints.json → atomic_constraints_property.json} +0 -0
  143. /package/example/properties_directory/structural/lattice/{lattice_vectors.json → vectors.json} +0 -0
@@ -1,7 +1,7 @@
1
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  {
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- "$id": "core/abstract/3d-vector-basis",
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+ "$id": "properties-directory/structural/lattice/vectors",
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "3 dimensional vector basis",
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+ "title": "lattice vectors schema",
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  "type": "object",
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  "required": [
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  "a",
@@ -11,7 +11,7 @@
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  "properties": {
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  "a": {
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "array of 3 number elements schema",
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+ "title": "vector 3d schema",
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  "type": "array",
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  "minItems": 3,
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  "maxItems": 3,
@@ -21,7 +21,7 @@
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  },
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  "b": {
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "array of 3 number elements schema",
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+ "title": "vector 3d schema",
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  "type": "array",
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  "minItems": 3,
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  "maxItems": 3,
@@ -31,13 +31,27 @@
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  },
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  "c": {
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "array of 3 number elements schema",
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+ "title": "vector 3d schema",
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  "type": "array",
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  "minItems": 3,
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  "maxItems": 3,
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  "items": {
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  "type": "number"
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  }
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+ },
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+ "alat": {
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+ "description": "lattice parameter for fractional coordinates",
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+ "type": "number",
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+ "default": 1
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+ },
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+ "units": {
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "lattice vectors units enum",
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+ "enum": [
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+ "angstrom",
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+ "bohr"
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+ ],
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+ "default": "angstrom"
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  }
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  }
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  }
@@ -5,17 +5,40 @@
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  "type": "object",
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  "required": [
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  "a",
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- "alpha",
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  "b",
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- "beta",
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  "c",
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- "gamma",
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- "type"
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+ "alpha",
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+ "beta",
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+ "gamma"
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  ],
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  "properties": {
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+ "a": {
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+ "description": "length of the first lattice vector",
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+ "type": "number"
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+ },
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+ "b": {
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+ "description": "length of the second lattice vector",
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+ "type": "number"
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+ },
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+ "c": {
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+ "description": "length of the third lattice vector",
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+ "type": "number"
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+ },
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+ "alpha": {
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+ "description": "angle between first and second lattice vector",
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+ "type": "number"
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+ },
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+ "beta": {
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+ "description": "angle between second and third lattice vector",
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+ "type": "number"
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+ },
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+ "gamma": {
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+ "description": "angle between first and third lattice vector",
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+ "type": "number"
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+ },
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  "vectors": {
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "lattice explicit unit",
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+ "title": "lattice vectors schema",
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  "type": "object",
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  "required": [
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  "a",
@@ -23,28 +46,9 @@
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  "c"
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  ],
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  "properties": {
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- "alat": {
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- "description": "lattice parameter for fractional coordinates",
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- "type": "number",
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- "default": 1
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- },
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- "units": {
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- "enum": [
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- "km",
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- "m",
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- "cm",
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- "mm",
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- "um",
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- "nm",
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- "angstrom",
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- "a.u.",
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- "bohr",
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- "pm"
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- ]
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- },
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  "a": {
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "array of 3 number elements schema",
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+ "title": "vector 3d schema",
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  "type": "array",
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  "minItems": 3,
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  "maxItems": 3,
@@ -54,7 +58,7 @@
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  },
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  "b": {
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "array of 3 number elements schema",
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+ "title": "vector 3d schema",
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  "type": "array",
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  "minItems": 3,
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  "maxItems": 3,
@@ -64,13 +68,27 @@
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  },
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  "c": {
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "array of 3 number elements schema",
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+ "title": "vector 3d schema",
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  "type": "array",
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  "minItems": 3,
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  "maxItems": 3,
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  "items": {
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  "type": "number"
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  }
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+ },
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+ "alat": {
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+ "description": "lattice parameter for fractional coordinates",
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+ "type": "number",
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+ "default": 1
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+ },
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+ "units": {
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "lattice vectors units enum",
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+ "enum": [
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+ "angstrom",
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+ "bohr"
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+ ],
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+ "default": "angstrom"
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  }
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  }
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  },
@@ -97,6 +115,7 @@
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  "default": "TRI"
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  },
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  "units": {
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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  "title": "Lattice units schema",
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  "type": "object",
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  "default": {
@@ -105,6 +124,8 @@
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  },
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  "properties": {
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  "length": {
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "lattice units length enum",
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  "enum": [
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  "angstrom",
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  "bohr"
@@ -112,6 +133,8 @@
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  "default": "angstrom"
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  },
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  "angle": {
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "lattice units angle enum",
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  "enum": [
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  "degree",
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  "radian"
@@ -119,30 +142,6 @@
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  "default": "degree"
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  }
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  }
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- },
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- "a": {
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- "description": "length of the first lattice vector",
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- "type": "number"
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- },
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- "b": {
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- "description": "length of the second lattice vector",
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- "type": "number"
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- },
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- "c": {
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- "description": "length of the third lattice vector",
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- "type": "number"
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- },
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- "alpha": {
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- "description": "angle between first and second lattice vector",
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- "type": "number"
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- },
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- "beta": {
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- "description": "angle between second and third lattice vector",
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- "type": "number"
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- },
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- "gamma": {
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- "description": "angle between first and third lattice vector",
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- "type": "number"
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  }
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  }
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  }
@@ -14,35 +14,26 @@
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  "$schema": "http://json-schema.org/draft-07/schema#",
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  "title": "atomic vectors schema",
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  "type": "array",
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- "description": "array of objects containing integer id each",
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  "items": {
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "atomic vector schema",
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+ "description": "object containing integer id and value each",
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  "type": "object",
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+ "required": [
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+ "id",
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+ "value"
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+ ],
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  "properties": {
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  "value": {
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  "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "vector schema",
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- "oneOf": [
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "array of 3 number elements schema",
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- "type": "array",
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- "items": {
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- "type": "number"
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- },
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- "minItems": 3,
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- "maxItems": 3
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- },
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "array of 3 boolean elements schema",
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- "type": "array",
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- "items": {
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- "type": "boolean"
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- },
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- "minItems": 3,
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- "maxItems": 3
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- }
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- ]
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+ "title": "vector 3d schema",
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+ "type": "array",
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+ "minItems": 3,
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+ "maxItems": 3,
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+ "description": "value of this entry",
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+ "items": {
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+ "type": "number"
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+ }
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  },
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  "id": {
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39
  "description": "integer id of this entry",
@@ -18,10 +18,16 @@
18
18
  "atoms": {
19
19
  "type": "array",
20
20
  "$schema": "http://json-schema.org/draft-07/schema#",
21
- "title": "atomic ids",
21
+ "title": "array of ids",
22
22
  "description": "array of objects containing integer id each",
23
23
  "items": {
24
24
  "type": "object",
25
+ "$schema": "http://json-schema.org/draft-07/schema#",
26
+ "title": "object with id",
27
+ "description": "object containing integer id",
28
+ "required": [
29
+ "id"
30
+ ],
25
31
  "properties": {
26
32
  "isConnector": {
27
33
  "description": "whether atom connects to atoms outside of functional group.",
@@ -53,10 +59,16 @@
53
59
  "atoms": {
54
60
  "type": "array",
55
61
  "$schema": "http://json-schema.org/draft-07/schema#",
56
- "title": "atomic ids",
62
+ "title": "array of ids",
57
63
  "description": "array of objects containing integer id each",
58
64
  "items": {
59
65
  "type": "object",
66
+ "$schema": "http://json-schema.org/draft-07/schema#",
67
+ "title": "object with id",
68
+ "description": "object containing integer id",
69
+ "required": [
70
+ "id"
71
+ ],
60
72
  "properties": {
61
73
  "isConnector": {
62
74
  "description": "whether atom connects to atoms outside of functional group.",
@@ -88,10 +100,16 @@
88
100
  "atoms": {
89
101
  "type": "array",
90
102
  "$schema": "http://json-schema.org/draft-07/schema#",
91
- "title": "atomic ids",
103
+ "title": "array of ids",
92
104
  "description": "array of objects containing integer id each",
93
105
  "items": {
94
106
  "type": "object",
107
+ "$schema": "http://json-schema.org/draft-07/schema#",
108
+ "title": "object with id",
109
+ "description": "object containing integer id",
110
+ "required": [
111
+ "id"
112
+ ],
95
113
  "properties": {
96
114
  "isConnector": {
97
115
  "description": "whether atom connects to atoms outside of functional group.",
@@ -12,10 +12,16 @@
12
12
  "atoms": {
13
13
  "type": "array",
14
14
  "$schema": "http://json-schema.org/draft-07/schema#",
15
- "title": "atomic ids",
15
+ "title": "array of ids",
16
16
  "description": "array of objects containing integer id each",
17
17
  "items": {
18
18
  "type": "object",
19
+ "$schema": "http://json-schema.org/draft-07/schema#",
20
+ "title": "object with id",
21
+ "description": "object containing integer id",
22
+ "required": [
23
+ "id"
24
+ ],
19
25
  "properties": {
20
26
  "isConnector": {
21
27
  "description": "whether atom connects to atoms outside of functional group.",
@@ -12,10 +12,16 @@
12
12
  "atoms": {
13
13
  "type": "array",
14
14
  "$schema": "http://json-schema.org/draft-07/schema#",
15
- "title": "atomic ids",
15
+ "title": "array of ids",
16
16
  "description": "array of objects containing integer id each",
17
17
  "items": {
18
18
  "type": "object",
19
+ "$schema": "http://json-schema.org/draft-07/schema#",
20
+ "title": "object with id",
21
+ "description": "object containing integer id",
22
+ "required": [
23
+ "id"
24
+ ],
19
25
  "properties": {
20
26
  "isConnector": {
21
27
  "description": "whether atom connects to atoms outside of functional group.",
@@ -13,10 +13,16 @@
13
13
  "atoms": {
14
14
  "type": "array",
15
15
  "$schema": "http://json-schema.org/draft-07/schema#",
16
- "title": "atomic ids",
16
+ "title": "array of ids",
17
17
  "description": "array of objects containing integer id each",
18
18
  "items": {
19
19
  "type": "object",
20
+ "$schema": "http://json-schema.org/draft-07/schema#",
21
+ "title": "object with id",
22
+ "description": "object containing integer id",
23
+ "required": [
24
+ "id"
25
+ ],
20
26
  "properties": {
21
27
  "isConnector": {
22
28
  "description": "whether atom connects to atoms outside of functional group.",