@mat3ra/esse 2024.4.8-1 → 2024.4.8-2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.pre-commit-config.yaml +3 -3
- package/package.json +1 -1
- package/dist/py/__init__.py +0 -3
- package/dist/py/core/__init__.py +0 -3
- package/dist/py/core/abstract/2d_data.py +0 -17
- package/dist/py/core/abstract/2d_plot.py +0 -34
- package/dist/py/core/abstract/3d_grid.py +0 -14
- package/dist/py/core/abstract/3d_tensor.py +0 -19
- package/dist/py/core/abstract/3d_vector_basis.py +0 -15
- package/dist/py/core/abstract/__init__.py +0 -3
- package/dist/py/core/abstract/point.py +0 -13
- package/dist/py/core/abstract/vector.py +0 -13
- package/dist/py/core/primitive/1d_data_series.py +0 -13
- package/dist/py/core/primitive/3d_lattice.py +0 -34
- package/dist/py/core/primitive/__init__.py +0 -3
- package/dist/py/core/primitive/array_of_3_booleans.py +0 -13
- package/dist/py/core/primitive/array_of_3_numbers.py +0 -13
- package/dist/py/core/primitive/array_of_ids.py +0 -23
- package/dist/py/core/primitive/array_of_strings.py +0 -16
- package/dist/py/core/primitive/axis.py +0 -20
- package/dist/py/core/primitive/group_info.py +0 -20
- package/dist/py/core/primitive/integer_one_or_zero.py +0 -11
- package/dist/py/core/primitive/linked_list/__init__.py +0 -33
- package/dist/py/core/primitive/linked_list/base_node.py +0 -31
- package/dist/py/core/primitive/linked_list/named_node.py +0 -35
- package/dist/py/core/primitive/linked_list/named_node_in_group.py +0 -43
- package/dist/py/core/primitive/linked_list/node_with_type.py +0 -32
- package/dist/py/core/primitive/scalar.py +0 -11
- package/dist/py/core/primitive/slugified_entry.py +0 -18
- package/dist/py/core/primitive/slugified_entry_or_slug.py +0 -27
- package/dist/py/core/primitive/string.py +0 -11
- package/dist/py/core/reference/__init__.py +0 -260
- package/dist/py/core/reference/exabyte.py +0 -24
- package/dist/py/core/reference/experiment/__init__.py +0 -150
- package/dist/py/core/reference/experiment/condition.py +0 -28
- package/dist/py/core/reference/experiment/location.py +0 -18
- package/dist/py/core/reference/literature/__init__.py +0 -86
- package/dist/py/core/reference/literature/name.py +0 -16
- package/dist/py/core/reference/literature/pages.py +0 -14
- package/dist/py/core/reference/modeling/__init__.py +0 -49
- package/dist/py/core/reference/modeling/exabyte.py +0 -42
- package/dist/py/core/reusable/__init__.py +0 -3
- package/dist/py/core/reusable/atomic_data/__init__.py +0 -3
- package/dist/py/core/reusable/atomic_data/per_orbital.py +0 -21
- package/dist/py/core/reusable/atomic_data/per_orbital_pair.py +0 -34
- package/dist/py/core/reusable/atomic_data/value_number.py +0 -16
- package/dist/py/core/reusable/atomic_data/value_string.py +0 -16
- package/dist/py/core/reusable/atomic_data_per_orbital_numeric.py +0 -25
- package/dist/py/core/reusable/atomic_data_per_orbital_pair_numeric.py +0 -38
- package/dist/py/core/reusable/atomic_orbital.py +0 -20
- package/dist/py/core/reusable/atomic_scalars.py +0 -28
- package/dist/py/core/reusable/atomic_strings.py +0 -24
- package/dist/py/core/reusable/atomic_vectors.py +0 -24
- package/dist/py/core/reusable/band_gap.py +0 -42
- package/dist/py/core/reusable/categories.py +0 -43
- package/dist/py/core/reusable/category_path.py +0 -14
- package/dist/py/core/reusable/dielectric_tensor_component.py +0 -31
- package/dist/py/core/reusable/energy.py +0 -30
- package/dist/py/core/reusable/file_metadata.py +0 -24
- package/dist/py/core/reusable/frequency_function_matrix.py +0 -20
- package/dist/py/core/reusable/object_storage_container_data.py +0 -36
- package/dist/py/definitions/__init__.py +0 -3
- package/dist/py/definitions/units.py +0 -13
- package/dist/py/element.py +0 -74
- package/dist/py/in_memory_entity/__init__.py +0 -3
- package/dist/py/in_memory_entity/base.py +0 -58
- package/dist/py/in_memory_entity/defaultable.py +0 -62
- package/dist/py/in_memory_entity/named.py +0 -62
- package/dist/py/in_memory_entity/named_defaultable.py +0 -66
- package/dist/py/in_memory_entity/named_defaultable_has_metadata.py +0 -67
- package/dist/py/in_memory_entity/named_defaultable_runtime_items.py +0 -89
- package/dist/py/job/__init__.py +0 -3006
- package/dist/py/job/base.py +0 -287
- package/dist/py/job/compute.py +0 -161
- package/dist/py/material/__init__.py +0 -420
- package/dist/py/material/conventional.py +0 -13
- package/dist/py/method/__init__.py +0 -28
- package/dist/py/method/categorized_method.py +0 -86
- package/dist/py/method/method_parameters.py +0 -48
- package/dist/py/method/unit_method.py +0 -70
- package/dist/py/methods_category/mathematical/__init__.py +0 -3
- package/dist/py/methods_category/mathematical/diff/__init__.py +0 -48
- package/dist/py/methods_category/mathematical/diff/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/diff/fd.py +0 -52
- package/dist/py/methods_category/mathematical/discr/__init__.py +0 -48
- package/dist/py/methods_category/mathematical/discr/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/discr/mesh/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/discr/mesh/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/discr/mesh/hybrid.py +0 -56
- package/dist/py/methods_category/mathematical/discr/mesh/nstruct.py +0 -56
- package/dist/py/methods_category/mathematical/discr/mesh/struct/__init__.py +0 -56
- package/dist/py/methods_category/mathematical/discr/mesh/struct/cartesian.py +0 -60
- package/dist/py/methods_category/mathematical/discr/mesh/struct/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/fapprx/__init__.py +0 -48
- package/dist/py/methods_category/mathematical/fapprx/basisexp.py +0 -52
- package/dist/py/methods_category/mathematical/fapprx/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/fapprx/ipol/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/fapprx/ipol/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/fapprx/ipol/lin.py +0 -56
- package/dist/py/methods_category/mathematical/fapprx/ipol/poly.py +0 -56
- package/dist/py/methods_category/mathematical/fapprx/ipol/spline.py +0 -56
- package/dist/py/methods_category/mathematical/intgr/__init__.py +0 -48
- package/dist/py/methods_category/mathematical/intgr/analytic/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/intgr/analytic/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/intgr/analytic/volume.py +0 -67
- package/dist/py/methods_category/mathematical/intgr/diffeq/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/intgr/diffeq/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/intgr/diffeq/order1.py +0 -56
- package/dist/py/methods_category/mathematical/intgr/diffeq/order2.py +0 -56
- package/dist/py/methods_category/mathematical/intgr/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/intgr/numquad/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/intgr/numquad/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/intgr/numquad/gauss.py +0 -56
- package/dist/py/methods_category/mathematical/intgr/numquad/newcot.py +0 -56
- package/dist/py/methods_category/mathematical/intgr/transf/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/intgr/transf/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/intgr/transf/fourier.py +0 -56
- package/dist/py/methods_category/mathematical/linalg/__init__.py +0 -48
- package/dist/py/methods_category/mathematical/linalg/dcomp.py +0 -52
- package/dist/py/methods_category/mathematical/linalg/diag/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/linalg/diag/davidson.py +0 -56
- package/dist/py/methods_category/mathematical/linalg/diag/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/linalg/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/linalg/lintra.py +0 -52
- package/dist/py/methods_category/mathematical/linalg/matf.py +0 -52
- package/dist/py/methods_category/mathematical/opt/__init__.py +0 -48
- package/dist/py/methods_category/mathematical/opt/diff/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/opt/diff/bracket.py +0 -56
- package/dist/py/methods_category/mathematical/opt/diff/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/opt/diff/local.py +0 -56
- package/dist/py/methods_category/mathematical/opt/diff/order1.py +0 -56
- package/dist/py/methods_category/mathematical/opt/diff/order2.py +0 -56
- package/dist/py/methods_category/mathematical/opt/diff/ordern/__init__.py +0 -56
- package/dist/py/methods_category/mathematical/opt/diff/ordern/cg.py +0 -60
- package/dist/py/methods_category/mathematical/opt/diff/ordern/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/opt/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/opt/ndiff/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/opt/ndiff/direct.py +0 -56
- package/dist/py/methods_category/mathematical/opt/ndiff/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/opt/ndiff/pop.py +0 -56
- package/dist/py/methods_category/mathematical/opt/ndiff/stoch.py +0 -56
- package/dist/py/methods_category/mathematical/opt/root/__init__.py +0 -52
- package/dist/py/methods_category/mathematical/opt/root/bracket.py +0 -56
- package/dist/py/methods_category/mathematical/opt/root/enum_options.py +0 -13
- package/dist/py/methods_category/mathematical/opt/root/iter.py +0 -56
- package/dist/py/methods_category/mathematical/regression.py +0 -54
- package/dist/py/methods_category/physical/__init__.py +0 -3
- package/dist/py/methods_category/physical/enum_options.py +0 -13
- package/dist/py/methods_category/physical/qm/__init__.py +0 -48
- package/dist/py/methods_category/physical/qm/enum_options.py +0 -13
- package/dist/py/methods_category/physical/qm/wf/__init__.py +0 -52
- package/dist/py/methods_category/physical/qm/wf/ao/__init__.py +0 -62
- package/dist/py/methods_category/physical/qm/wf/ao/dunning.py +0 -60
- package/dist/py/methods_category/physical/qm/wf/ao/other.py +0 -60
- package/dist/py/methods_category/physical/qm/wf/ao/pople.py +0 -60
- package/dist/py/methods_category/physical/qm/wf/enum_options.py +0 -13
- package/dist/py/methods_category/physical/qm/wf/psp.py +0 -63
- package/dist/py/methods_category/physical/qm/wf/pw.py +0 -56
- package/dist/py/methods_category/physical/qm/wf/smearing.py +0 -63
- package/dist/py/methods_category/physical/qm/wf/tetrahedron.py +0 -62
- package/dist/py/methods_directory/legacy/__init__.py +0 -3
- package/dist/py/methods_directory/legacy/localorbital.py +0 -37
- package/dist/py/methods_directory/legacy/pseudopotential.py +0 -40
- package/dist/py/methods_directory/legacy/regression.py +0 -118
- package/dist/py/methods_directory/legacy/unknown.py +0 -37
- package/dist/py/methods_directory/mathematical/__init__.py +0 -3
- package/dist/py/methods_directory/mathematical/cg.py +0 -87
- package/dist/py/methods_directory/mathematical/davidson.py +0 -83
- package/dist/py/methods_directory/mathematical/regression/__init__.py +0 -161
- package/dist/py/methods_directory/mathematical/regression/data.py +0 -69
- package/dist/py/methods_directory/mathematical/regression/dataset.py +0 -20
- package/dist/py/methods_directory/mathematical/regression/kernel_ridge/__init__.py +0 -3
- package/dist/py/methods_directory/mathematical/regression/kernel_ridge/data_per_property.py +0 -39
- package/dist/py/methods_directory/mathematical/regression/linear/__init__.py +0 -3
- package/dist/py/methods_directory/mathematical/regression/linear/data_per_property.py +0 -35
- package/dist/py/methods_directory/mathematical/regression/per_feature_item.py +0 -24
- package/dist/py/methods_directory/mathematical/regression/precision.py +0 -28
- package/dist/py/methods_directory/mathematical/regression/precision_per_property.py +0 -24
- package/dist/py/methods_directory/physical/__init__.py +0 -3
- package/dist/py/methods_directory/physical/ao/__init__.py +0 -3
- package/dist/py/methods_directory/physical/ao/dunning.py +0 -103
- package/dist/py/methods_directory/physical/ao/enum_options.py +0 -13
- package/dist/py/methods_directory/physical/ao/other.py +0 -107
- package/dist/py/methods_directory/physical/ao/pople.py +0 -101
- package/dist/py/methods_directory/physical/psp/__init__.py +0 -187
- package/dist/py/methods_directory/physical/psp/file.py +0 -106
- package/dist/py/methods_directory/physical/psp/file_data_item.py +0 -88
- package/dist/py/methods_directory/physical/pw.py +0 -83
- package/dist/py/methods_directory/physical/smearing.py +0 -90
- package/dist/py/methods_directory/physical/tetrahedron.py +0 -91
- package/dist/py/model/__init__.py +0 -43
- package/dist/py/model/categorized_model.py +0 -211
- package/dist/py/model/mixins/__init__.py +0 -3
- package/dist/py/model/mixins/dft/__init__.py +0 -5
- package/dist/py/model/mixins/dft/double_hybrid_functional.py +0 -18
- package/dist/py/model/mixins/dft/enum_options.py +0 -13
- package/dist/py/model/mixins/dft/gga_functional.py +0 -22
- package/dist/py/model/mixins/dft/hybrid_functional.py +0 -19
- package/dist/py/model/mixins/dft/lda_functional.py +0 -21
- package/dist/py/model/mixins/dft/mgga_functional.py +0 -21
- package/dist/py/model/mixins/dispersion_correction.py +0 -21
- package/dist/py/model/mixins/enum_options.py +0 -13
- package/dist/py/model/mixins/hubbard.py +0 -18
- package/dist/py/model/mixins/spin_orbit_coupling.py +0 -16
- package/dist/py/model/mixins/spin_polarization.py +0 -22
- package/dist/py/model/model_parameters.py +0 -123
- package/dist/py/model/model_without_method.py +0 -144
- package/dist/py/models_category/__init__.py +0 -3
- package/dist/py/models_category/enum_options.py +0 -13
- package/dist/py/models_category/pb/__init__.py +0 -48
- package/dist/py/models_category/pb/enum_options.py +0 -13
- package/dist/py/models_category/pb/qm/__init__.py +0 -52
- package/dist/py/models_category/pb/qm/abin/__init__.py +0 -56
- package/dist/py/models_category/pb/qm/abin/enum_options.py +0 -13
- package/dist/py/models_category/pb/qm/abin/gw.py +0 -66
- package/dist/py/models_category/pb/qm/dft/__init__.py +0 -56
- package/dist/py/models_category/pb/qm/dft/enum_options.py +0 -13
- package/dist/py/models_category/pb/qm/dft/ksdft/__init__.py +0 -60
- package/dist/py/models_category/pb/qm/dft/ksdft/double_hybrid.py +0 -64
- package/dist/py/models_category/pb/qm/dft/ksdft/enum_options.py +0 -13
- package/dist/py/models_category/pb/qm/dft/ksdft/gga.py +0 -64
- package/dist/py/models_category/pb/qm/dft/ksdft/hybrid.py +0 -64
- package/dist/py/models_category/pb/qm/dft/ksdft/lda.py +0 -64
- package/dist/py/models_category/pb/qm/dft/ksdft/mgga.py +0 -64
- package/dist/py/models_category/pb/qm/enum_options.py +0 -13
- package/dist/py/models_category/pb/qm/semp.py +0 -56
- package/dist/py/models_category/st/__init__.py +0 -48
- package/dist/py/models_category/st/det/__init__.py +0 -52
- package/dist/py/models_category/st/det/enum_options.py +0 -13
- package/dist/py/models_category/st/det/ml/__init__.py +0 -56
- package/dist/py/models_category/st/det/ml/enum_options.py +0 -13
- package/dist/py/models_category/st/det/ml/re.py +0 -60
- package/dist/py/models_category/st/enum_options.py +0 -13
- package/dist/py/models_directory/__init__.py +0 -3
- package/dist/py/models_directory/double_hybrid.py +0 -205
- package/dist/py/models_directory/gga.py +0 -219
- package/dist/py/models_directory/gw.py +0 -272
- package/dist/py/models_directory/hybrid.py +0 -213
- package/dist/py/models_directory/lda.py +0 -218
- package/dist/py/models_directory/legacy/__init__.py +0 -3
- package/dist/py/models_directory/legacy/dft.py +0 -170
- package/dist/py/models_directory/legacy/ml.py +0 -52
- package/dist/py/models_directory/legacy/unknown.py +0 -52
- package/dist/py/models_directory/mgga.py +0 -218
- package/dist/py/models_directory/re.py +0 -160
- package/dist/py/project.py +0 -82
- package/dist/py/properties_directory/__init__.py +0 -3
- package/dist/py/properties_directory/derived_properties.py +0 -140
- package/dist/py/properties_directory/electronic_configuration.py +0 -20
- package/dist/py/properties_directory/elemental/__init__.py +0 -3
- package/dist/py/properties_directory/elemental/atomic_radius.py +0 -34
- package/dist/py/properties_directory/elemental/electronegativity.py +0 -19
- package/dist/py/properties_directory/elemental/ionization_potential.py +0 -30
- package/dist/py/properties_directory/non_scalar/__init__.py +0 -3
- package/dist/py/properties_directory/non_scalar/average_potential_profile.py +0 -83
- package/dist/py/properties_directory/non_scalar/band_gaps.py +0 -64
- package/dist/py/properties_directory/non_scalar/band_structure.py +0 -92
- package/dist/py/properties_directory/non_scalar/charge_density_profile.py +0 -63
- package/dist/py/properties_directory/non_scalar/density_of_states.py +0 -97
- package/dist/py/properties_directory/non_scalar/dielectric_tensor.py +0 -40
- package/dist/py/properties_directory/non_scalar/file_content.py +0 -64
- package/dist/py/properties_directory/non_scalar/hubbard_u.py +0 -40
- package/dist/py/properties_directory/non_scalar/hubbard_v.py +0 -54
- package/dist/py/properties_directory/non_scalar/hubbard_v_nn.py +0 -54
- package/dist/py/properties_directory/non_scalar/phonon_dispersions.py +0 -79
- package/dist/py/properties_directory/non_scalar/phonon_dos.py +0 -71
- package/dist/py/properties_directory/non_scalar/potential_profile.py +0 -69
- package/dist/py/properties_directory/non_scalar/reaction_energy_profile.py +0 -69
- package/dist/py/properties_directory/non_scalar/stress_tensor.py +0 -31
- package/dist/py/properties_directory/non_scalar/total_energy_contributions.py +0 -198
- package/dist/py/properties_directory/non_scalar/vibrational_spectrum.py +0 -75
- package/dist/py/properties_directory/scalar/__init__.py +0 -3
- package/dist/py/properties_directory/scalar/electron_affinity.py +0 -34
- package/dist/py/properties_directory/scalar/fermi_energy.py +0 -34
- package/dist/py/properties_directory/scalar/formation_energy.py +0 -34
- package/dist/py/properties_directory/scalar/ionization_potential.py +0 -34
- package/dist/py/properties_directory/scalar/pressure.py +0 -25
- package/dist/py/properties_directory/scalar/reaction_energy_barrier.py +0 -34
- package/dist/py/properties_directory/scalar/surface_energy.py +0 -34
- package/dist/py/properties_directory/scalar/total_energy.py +0 -34
- package/dist/py/properties_directory/scalar/total_force.py +0 -29
- package/dist/py/properties_directory/scalar/valence_band_offset.py +0 -34
- package/dist/py/properties_directory/scalar/zero_point_energy.py +0 -34
- package/dist/py/properties_directory/structural/__init__.py +0 -3
- package/dist/py/properties_directory/structural/atomic_forces.py +0 -40
- package/dist/py/properties_directory/structural/basis/__init__.py +0 -68
- package/dist/py/properties_directory/structural/basis/atomic_constraints.py +0 -30
- package/dist/py/properties_directory/structural/basis/atomic_coordinate.py +0 -14
- package/dist/py/properties_directory/structural/basis/atomic_coordinates.py +0 -39
- package/dist/py/properties_directory/structural/basis/atomic_element.py +0 -19
- package/dist/py/properties_directory/structural/basis/bonds.py +0 -40
- package/dist/py/properties_directory/structural/density.py +0 -24
- package/dist/py/properties_directory/structural/elemental_ratio.py +0 -23
- package/dist/py/properties_directory/structural/inchi.py +0 -19
- package/dist/py/properties_directory/structural/inchi_key.py +0 -19
- package/dist/py/properties_directory/structural/lattice/__init__.py +0 -102
- package/dist/py/properties_directory/structural/lattice/lattice_bravais.py +0 -71
- package/dist/py/properties_directory/structural/lattice/lattice_vectors.py +0 -35
- package/dist/py/properties_directory/structural/lattice/type_enum.py +0 -24
- package/dist/py/properties_directory/structural/lattice/type_extended_enum.py +0 -34
- package/dist/py/properties_directory/structural/magnetic_moments.py +0 -35
- package/dist/py/properties_directory/structural/molecular_pattern.py +0 -70
- package/dist/py/properties_directory/structural/p_norm.py +0 -23
- package/dist/py/properties_directory/structural/patterns/__init__.py +0 -3
- package/dist/py/properties_directory/structural/patterns/functional_group.py +0 -37
- package/dist/py/properties_directory/structural/patterns/ring.py +0 -34
- package/dist/py/properties_directory/structural/patterns/special_bond.py +0 -33
- package/dist/py/properties_directory/structural/symmetry.py +0 -39
- package/dist/py/properties_directory/structural/volume.py +0 -24
- package/dist/py/properties_directory/workflow/convergence/__init__.py +0 -3
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- package/dist/py/workflow/scope.py +0 -14
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- package/dist/py/workflow/unit/assignment.py +0 -165
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- package/dist/py/workflow/unit/input/_input.py +0 -43
- package/dist/py/workflow/unit/input/_inputItem.py +0 -18
- package/dist/py/workflow/unit/input/_inputItemId.py +0 -21
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- package/dist/py/workflow/unit/input/_map_input/__init__.py +0 -17
- package/dist/py/workflow/unit/input/_map_input/values.py +0 -13
- package/dist/py/workflow/unit/io/__init__.py +0 -254
- package/dist/py/workflow/unit/io/api.py +0 -27
- package/dist/py/workflow/unit/io/db.py +0 -39
- package/dist/py/workflow/unit/io/object_storage.py +0 -59
- package/dist/py/workflow/unit/map.py +0 -169
- package/dist/py/workflow/unit/processing.py +0 -153
- package/dist/py/workflow/unit/reduce.py +0 -160
- package/dist/py/workflow/unit/runtime/__init__.py +0 -3
- package/dist/py/workflow/unit/runtime/_runtime_item_full_object.py +0 -14
- package/dist/py/workflow/unit/runtime/_runtime_item_name_object.py +0 -14
- package/dist/py/workflow/unit/runtime/_runtime_item_string.py +0 -14
- package/dist/py/workflow/unit/runtime/runtime_item.py +0 -20
- package/dist/py/workflow/unit/runtime/runtime_items.py +0 -35
- package/dist/py/workflow/unit/subworkflow.py +0 -141
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# filename: properties_directory/scalar/zero_point_energy.json
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rydberg = "rydberg"
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# filename: properties_directory/structural/atomic_forces.json
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integer id of this entry
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eV_angstrom = "eV/angstrom"
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newton = "newton"
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kg_m_s_2 = "kg*m/s^2"
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name: Optional[Name] = None
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values: Optional[List[AtomicVectorsSchemaItem]] = Field(None, title="atomic vectors schema")
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"""
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array of objects containing integer id each
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# filename: properties_directory/structural/basis.json
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# version: 0.25.5
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oxidationState: Optional[float] = None
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class Label(BaseModel):
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value: Optional[Union[List[float], List[bool]]] = Field(None, title="vector schema")
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class AtomicId(BaseModel):
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integer id of this entry
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class BondType(Enum):
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single = "single"
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double = "double"
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triple = "triple"
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quadruple = "quadruple"
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aromatic = "aromatic"
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tautomeric = "tautomeric"
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dative = "dative"
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other = "other"
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class BondsSchemaItem(BaseModel):
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atomPair: Optional[List[AtomicId]] = Field(None, max_length=2, min_length=2, title="atomic ids")
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"""
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indices of the two connected atoms
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bondType: Optional[BondType] = None
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class BasisSchema(BaseModel):
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elements: List[AtomicElements]
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labels: Optional[List[Label]] = None
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"""
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Optional numeric label (e.g., 1, 2, as in Fe1, Fe2) to distinguish same atomic species to attach different spin magnetic moment.
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"""
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coordinates: List[AtomicCoordinate]
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name: Optional[str] = None
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units: Optional[str] = None
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bonds: Optional[List[BondsSchemaItem]] = Field(None, title="bonds schema")
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# filename: properties_directory/structural/basis/atomic_constraints.json
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# version: 0.25.5
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atomic_constraints = "atomic_constraints"
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class AtomicVectorsSchemaItem(BaseModel):
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value: Optional[Union[List[float], List[bool]]] = Field(None, title="vector schema")
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id: Optional[int] = None
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"""
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integer id of this entry
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"""
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class AtomicConstraints(BaseModel):
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name: Optional[Name] = None
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values: Optional[List[AtomicVectorsSchemaItem]] = Field(None, title="atomic vectors schema")
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"""
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array of objects containing integer id each
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"""
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@@ -1,14 +0,0 @@
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# generated by datamodel-codegen:
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# filename: properties_directory/structural/basis/atomic_coordinate.json
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# version: 0.25.5
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id: Optional[float] = None
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value: Optional[Union[List[float], List[bool]]] = Field(None, title="vector schema")
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@@ -1,39 +0,0 @@
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# generated by datamodel-codegen:
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# filename: properties_directory/structural/basis/atomic_coordinates.json
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# version: 0.25.5
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atomic_coordinates = "atomic_coordinates"
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class AtomicCoordinate(BaseModel):
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id: Optional[float] = None
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value: Optional[Union[List[float], List[bool]]] = Field(None, title="vector schema")
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|
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class Units(Enum):
|
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|
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km = "km"
|
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|
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m = "m"
|
|
25
|
-
pm = "pm"
|
|
26
|
-
nm = "nm"
|
|
27
|
-
angstrom = "angstrom"
|
|
28
|
-
a_u_ = "a.u."
|
|
29
|
-
bohr = "bohr"
|
|
30
|
-
fractional = "fractional"
|
|
31
|
-
crystal = "crystal"
|
|
32
|
-
cartesian = "cartesian"
|
|
33
|
-
alat = "alat"
|
|
34
|
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|
|
35
|
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|
|
36
|
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class AtomicCoordinates(BaseModel):
|
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name: Optional[Name] = None
|
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values: Optional[List[AtomicCoordinate]] = None
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units: Optional[Units] = None
|
|
@@ -1,19 +0,0 @@
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# generated by datamodel-codegen:
|
|
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|
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# filename: properties_directory/structural/basis/atomic_element.json
|
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|
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# version: 0.25.5
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|
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|
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|
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from __future__ import annotations
|
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class AtomicElements(BaseModel):
|
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id: float
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value: str
|
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|
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occurrence: Optional[float] = None
|
|
16
|
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"""
|
|
17
|
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Occurrence is for fractional occupations
|
|
18
|
-
"""
|
|
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|
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oxidationState: Optional[float] = None
|
|
@@ -1,40 +0,0 @@
|
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|
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# generated by datamodel-codegen:
|
|
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|
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# filename: properties_directory/structural/basis/bonds.json
|
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# version: 0.25.5
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|
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|
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from __future__ import annotations
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from enum import Enum
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from pydantic import BaseModel, Field, RootModel
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class AtomicId(BaseModel):
|
|
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|
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id: Optional[int] = None
|
|
15
|
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"""
|
|
16
|
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integer id of this entry
|
|
17
|
-
"""
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
class BondType(Enum):
|
|
21
|
-
single = "single"
|
|
22
|
-
double = "double"
|
|
23
|
-
triple = "triple"
|
|
24
|
-
quadruple = "quadruple"
|
|
25
|
-
aromatic = "aromatic"
|
|
26
|
-
tautomeric = "tautomeric"
|
|
27
|
-
dative = "dative"
|
|
28
|
-
other = "other"
|
|
29
|
-
|
|
30
|
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|
|
31
|
-
class BondsSchemaItem(BaseModel):
|
|
32
|
-
atomPair: Optional[List[AtomicId]] = Field(None, max_length=2, min_length=2, title="atomic ids")
|
|
33
|
-
"""
|
|
34
|
-
indices of the two connected atoms
|
|
35
|
-
"""
|
|
36
|
-
bondType: Optional[BondType] = None
|
|
37
|
-
|
|
38
|
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|
|
39
|
-
class BondsSchema(RootModel[List[BondsSchemaItem]]):
|
|
40
|
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root: List[BondsSchemaItem] = Field(..., title="bonds schema")
|
|
@@ -1,24 +0,0 @@
|
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|
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|
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# generated by datamodel-codegen:
|
|
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|
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# filename: properties_directory/structural/density.json
|
|
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|
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# version: 0.25.5
|
|
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|
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|
|
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|
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from __future__ import annotations
|
|
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|
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|
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from enum import Enum
|
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from typing import Optional
|
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from pydantic import BaseModel
|
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class Name(Enum):
|
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|
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density = "density"
|
|
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|
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|
|
16
|
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|
|
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|
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class Units(Enum):
|
|
18
|
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g_cm_3 = "g/cm^3"
|
|
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|
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|
|
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|
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|
|
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|
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class DensitySchema(BaseModel):
|
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|
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name: Optional[Name] = None
|
|
23
|
-
units: Optional[Units] = None
|
|
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|
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value: float
|
|
@@ -1,23 +0,0 @@
|
|
|
1
|
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# generated by datamodel-codegen:
|
|
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|
-
# filename: properties_directory/structural/elemental_ratio.json
|
|
3
|
-
# version: 0.25.5
|
|
4
|
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|
|
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|
-
from __future__ import annotations
|
|
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|
-
|
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|
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from enum import Enum
|
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8
|
-
from typing import Optional
|
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9
|
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|
|
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|
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from pydantic import BaseModel, confloat
|
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|
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|
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|
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|
|
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|
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class Name(Enum):
|
|
14
|
-
elemental_ratio = "elemental_ratio"
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
class ElementalRatio(BaseModel):
|
|
18
|
-
name: Optional[Name] = None
|
|
19
|
-
value: confloat(ge=0.0, le=1.0)
|
|
20
|
-
element: Optional[str] = None
|
|
21
|
-
"""
|
|
22
|
-
the element this ratio is for
|
|
23
|
-
"""
|
|
@@ -1,19 +0,0 @@
|
|
|
1
|
-
# generated by datamodel-codegen:
|
|
2
|
-
# filename: properties_directory/structural/inchi.json
|
|
3
|
-
# version: 0.25.5
|
|
4
|
-
|
|
5
|
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from __future__ import annotations
|
|
6
|
-
|
|
7
|
-
from enum import Enum
|
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8
|
-
from typing import Optional
|
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9
|
-
|
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10
|
-
from pydantic import BaseModel
|
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|
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|
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12
|
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|
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13
|
-
class Name(Enum):
|
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14
|
-
inchi = "inchi"
|
|
15
|
-
|
|
16
|
-
|
|
17
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class InChIRepresentationSchema(BaseModel):
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name: Optional[Name] = None
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value: str
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@@ -1,19 +0,0 @@
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# generated by datamodel-codegen:
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# filename: properties_directory/structural/inchi_key.json
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# version: 0.25.5
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4
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from __future__ import annotations
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from enum import Enum
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from typing import Optional
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9
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from pydantic import BaseModel
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class Name(Enum):
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inchi_key = "inchi_key"
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15
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16
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class InChIKeyRepresentationSchema(BaseModel):
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name: Optional[Name] = None
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value: str
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