@mat3ra/esse 2024.3.22-0 → 2024.3.25-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (564) hide show
  1. package/{build_schemas.js → build_schemas.ts} +3 -2
  2. package/dist/js/utils/ajv.js +4 -0
  3. package/package.json +26 -29
  4. package/schema/system/timestampable.json +2 -16
  5. package/src/js/utils/ajv.ts +5 -1
  6. package/tsconfig-transpile.json +3 -0
  7. package/tsconfig.json +1 -5
  8. package/dist/js/example/3pse/db/nist_jarvis/2024.3.13/db_entry.json +0 -91
  9. package/dist/js/example/3pse/file/applications/espresso/7.2/pw.x.json +0 -94
  10. package/dist/js/example/core/abstract/2d_data.json +0 -19
  11. package/dist/js/example/core/abstract/2d_plot.json +0 -26
  12. package/dist/js/example/core/abstract/3d_grid.json +0 -12
  13. package/dist/js/example/core/abstract/3d_tensor.json +0 -17
  14. package/dist/js/example/core/abstract/3d_vector_basis.json +0 -17
  15. package/dist/js/example/core/abstract/point.json +0 -5
  16. package/dist/js/example/core/abstract/vector.json +0 -5
  17. package/dist/js/example/core/primitive/1d_data_series.json +0 -12
  18. package/dist/js/example/core/primitive/3d_lattice.json +0 -8
  19. package/dist/js/example/core/primitive/array_of_3_booleans.json +0 -5
  20. package/dist/js/example/core/primitive/array_of_3_numbers.json +0 -5
  21. package/dist/js/example/core/primitive/array_of_ids.json +0 -8
  22. package/dist/js/example/core/primitive/axis.json +0 -4
  23. package/dist/js/example/core/primitive/scalar.json +0 -3
  24. package/dist/js/example/core/primitive/string.json +0 -3
  25. package/dist/js/example/core/reference/experiment/condition.json +0 -12
  26. package/dist/js/example/core/reference/experiment/location.json +0 -4
  27. package/dist/js/example/core/reference/experiment.json +0 -38
  28. package/dist/js/example/core/reference/literature/name.json +0 -5
  29. package/dist/js/example/core/reference/literature/pages.json +0 -4
  30. package/dist/js/example/core/reference/literature.json +0 -10
  31. package/dist/js/example/core/reference/modeling/exabyte.json +0 -9
  32. package/dist/js/example/core/reference/modeling.json +0 -9
  33. package/dist/js/example/core/reference.json +0 -9
  34. package/dist/js/example/core/reusable/atomic_vectors.json +0 -18
  35. package/dist/js/example/core/reusable/band_gap.json +0 -16
  36. package/dist/js/example/core/reusable/energy.json +0 -5
  37. package/dist/js/example/core/reusable/file_metadata.json +0 -5
  38. package/dist/js/example/core/reusable/object_storage_container_data.json +0 -8
  39. package/dist/js/example/element.json +0 -17
  40. package/dist/js/example/job/compute.json +0 -26
  41. package/dist/js/example/job.json +0 -183
  42. package/dist/js/example/material.json +0 -128
  43. package/dist/js/example/method/categorized_method.json +0 -47
  44. package/dist/js/example/method/method_parameters.json +0 -3
  45. package/dist/js/example/method.json +0 -7
  46. package/dist/js/example/methods_directory/legacy/localorbital.json +0 -4
  47. package/dist/js/example/methods_directory/legacy/pseudopotential.json +0 -4
  48. package/dist/js/example/methods_directory/legacy/regression.json +0 -61
  49. package/dist/js/example/methods_directory/legacy/unknown.json +0 -4
  50. package/dist/js/example/methods_directory/mathematical/cg.json +0 -10
  51. package/dist/js/example/methods_directory/mathematical/regression.json +0 -65
  52. package/dist/js/example/methods_directory/physical/ao/dunning.json +0 -13
  53. package/dist/js/example/methods_directory/physical/psp/file.json +0 -54
  54. package/dist/js/example/methods_directory/physical/psp.json +0 -67
  55. package/dist/js/example/methods_directory/physical/pw.json +0 -9
  56. package/dist/js/example/methods_directory/physical/smearing.json +0 -10
  57. package/dist/js/example/methods_directory/physical/tetrahedron.json +0 -10
  58. package/dist/js/example/model/categorized_model.json +0 -77
  59. package/dist/js/example/model/model_parameters.json +0 -7
  60. package/dist/js/example/model.json +0 -11
  61. package/dist/js/example/models_category/pb/qm/abin/gw.json +0 -7
  62. package/dist/js/example/models_category/pb/qm/dft/ksdft.json +0 -6
  63. package/dist/js/example/models_category/pb/qm/semp.json +0 -5
  64. package/dist/js/example/models_directory/gga.json +0 -15
  65. package/dist/js/example/models_directory/gw.json +0 -15
  66. package/dist/js/example/models_directory/hybrid.json +0 -15
  67. package/dist/js/example/models_directory/lda.json +0 -15
  68. package/dist/js/example/models_directory/legacy/dft.json +0 -12
  69. package/dist/js/example/models_directory/legacy/ml.json +0 -11
  70. package/dist/js/example/models_directory/legacy/unknown.json +0 -11
  71. package/dist/js/example/models_directory/re.json +0 -10
  72. package/dist/js/example/project.json +0 -25
  73. package/dist/js/example/properties_directory/electronic_configuration.json +0 -4
  74. package/dist/js/example/properties_directory/elemental/atomic_radius.json +0 -4
  75. package/dist/js/example/properties_directory/elemental/electronegativity.json +0 -4
  76. package/dist/js/example/properties_directory/elemental/ionization_potential.json +0 -4
  77. package/dist/js/example/properties_directory/non_scalar/band_gaps.json +0 -25
  78. package/dist/js/example/properties_directory/non_scalar/band_structure.json +0 -47
  79. package/dist/js/example/properties_directory/non_scalar/charge_density_profile.json +0 -22
  80. package/dist/js/example/properties_directory/non_scalar/density_of_states.json +0 -55
  81. package/dist/js/example/properties_directory/non_scalar/dielectric_tensor.json +0 -133
  82. package/dist/js/example/properties_directory/non_scalar/file_content.json +0 -13
  83. package/dist/js/example/properties_directory/non_scalar/hubbard_u.json +0 -24
  84. package/dist/js/example/properties_directory/non_scalar/hubbard_v.json +0 -22
  85. package/dist/js/example/properties_directory/non_scalar/hubbard_v_nn.json +0 -24
  86. package/dist/js/example/properties_directory/non_scalar/phonon_dispersions.json +0 -41
  87. package/dist/js/example/properties_directory/non_scalar/phonon_dos.json +0 -37
  88. package/dist/js/example/properties_directory/non_scalar/potential_profile.json +0 -32
  89. package/dist/js/example/properties_directory/non_scalar/reaction_energy_profile.json +0 -30
  90. package/dist/js/example/properties_directory/non_scalar/stress_tensor.json +0 -21
  91. package/dist/js/example/properties_directory/non_scalar/total_energy_contributions.json +0 -44
  92. package/dist/js/example/properties_directory/non_scalar/vibrational_spectrum.json +0 -25
  93. package/dist/js/example/properties_directory/scalar/electron_affinity.json +0 -5
  94. package/dist/js/example/properties_directory/scalar/fermi_energy.json +0 -5
  95. package/dist/js/example/properties_directory/scalar/formation_energy.json +0 -5
  96. package/dist/js/example/properties_directory/scalar/ionization_potential.json +0 -5
  97. package/dist/js/example/properties_directory/scalar/pressure.json +0 -5
  98. package/dist/js/example/properties_directory/scalar/reaction_energy_barrier.json +0 -5
  99. package/dist/js/example/properties_directory/scalar/surface_energy.json +0 -5
  100. package/dist/js/example/properties_directory/scalar/total_energy.json +0 -5
  101. package/dist/js/example/properties_directory/scalar/total_force.json +0 -5
  102. package/dist/js/example/properties_directory/scalar/valence_band_offset.json +0 -5
  103. package/dist/js/example/properties_directory/scalar/zero_point_energy.json +0 -5
  104. package/dist/js/example/properties_directory/structural/atomic_forces.json +0 -22
  105. package/dist/js/example/properties_directory/structural/basis/atomic_constraints.json +0 -21
  106. package/dist/js/example/properties_directory/structural/basis/atomic_coordinate.json +0 -8
  107. package/dist/js/example/properties_directory/structural/basis/atomic_coordinates.json +0 -21
  108. package/dist/js/example/properties_directory/structural/basis/atomic_element.json +0 -4
  109. package/dist/js/example/properties_directory/structural/basis/bonds.json +0 -24
  110. package/dist/js/example/properties_directory/structural/basis.json +0 -46
  111. package/dist/js/example/properties_directory/structural/density.json +0 -5
  112. package/dist/js/example/properties_directory/structural/elemental_ratio.json +0 -5
  113. package/dist/js/example/properties_directory/structural/inchi.json +0 -4
  114. package/dist/js/example/properties_directory/structural/inchi_key.json +0 -4
  115. package/dist/js/example/properties_directory/structural/lattice/lattice_bravais.json +0 -13
  116. package/dist/js/example/properties_directory/structural/lattice/lattice_vectors.json +0 -19
  117. package/dist/js/example/properties_directory/structural/lattice.json +0 -33
  118. package/dist/js/example/properties_directory/structural/magnetic_moments.json +0 -22
  119. package/dist/js/example/properties_directory/structural/molecular_pattern.json +0 -71
  120. package/dist/js/example/properties_directory/structural/p_norm.json +0 -5
  121. package/dist/js/example/properties_directory/structural/symmetry.json +0 -9
  122. package/dist/js/example/properties_directory/structural/volume.json +0 -5
  123. package/dist/js/example/properties_directory/workflow/convergence/electronic.json +0 -15
  124. package/dist/js/example/properties_directory/workflow/convergence/ionic.json +0 -20
  125. package/dist/js/example/properties_directory/workflow/convergence/kpoint.json +0 -22
  126. package/dist/js/example/property/base.json +0 -31
  127. package/dist/js/example/software/application.json +0 -7
  128. package/dist/js/example/software/executable.json +0 -20
  129. package/dist/js/example/software/flavor.json +0 -9
  130. package/dist/js/example/software/template.json +0 -14
  131. package/dist/js/example/software_directory/ml/exabyteml.json +0 -6
  132. package/dist/js/example/software_directory/ml/unit/execution/evaluate/cross_validate.json +0 -20
  133. package/dist/js/example/software_directory/ml/unit/execution/initialize.json +0 -23
  134. package/dist/js/example/software_directory/ml/unit/execution/score.json +0 -18
  135. package/dist/js/example/software_directory/ml/unit/execution/train.json +0 -29
  136. package/dist/js/example/software_directory/ml/unit/processing/data_transformation/manipulation.json +0 -14
  137. package/dist/js/example/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.json +0 -26
  138. package/dist/js/example/software_directory/ml/unit/processing/feature_selection/filter_based.json +0 -13
  139. package/dist/js/example/software_directory/modeling/espresso/arguments.json +0 -5
  140. package/dist/js/example/software_directory/modeling/espresso.json +0 -6
  141. package/dist/js/example/software_directory/modeling/nwchem.json +0 -6
  142. package/dist/js/example/software_directory/modeling/unit/execution.json +0 -19
  143. package/dist/js/example/software_directory/modeling/vasp.json +0 -6
  144. package/dist/js/example/software_directory/scripting/jupyter_lab.json +0 -8
  145. package/dist/js/example/software_directory/scripting/python.json +0 -8
  146. package/dist/js/example/software_directory/scripting/shell.json +0 -8
  147. package/dist/js/example/software_directory/scripting/unit/execution.json +0 -22
  148. package/dist/js/example/system/_material.json +0 -5
  149. package/dist/js/example/system/_parent_job.json +0 -5
  150. package/dist/js/example/system/_project.json +0 -5
  151. package/dist/js/example/system/consistency_check.json +0 -6
  152. package/dist/js/example/system/creator.json +0 -5
  153. package/dist/js/example/system/entity_reference.json +0 -5
  154. package/dist/js/example/system/file_source.json +0 -6
  155. package/dist/js/example/system/iframe_message.json +0 -9
  156. package/dist/js/example/system/message.json +0 -16
  157. package/dist/js/example/system/owner.json +0 -5
  158. package/dist/js/example/workflow/subworkflow.json +0 -93
  159. package/dist/js/example/workflow/unit/assignment.json +0 -19
  160. package/dist/js/example/workflow/unit/condition.json +0 -22
  161. package/dist/js/example/workflow/unit/execution.json +0 -66
  162. package/dist/js/example/workflow/unit/input/_inputItemScope.json +0 -4
  163. package/dist/js/example/workflow/unit/io/api.json +0 -31
  164. package/dist/js/example/workflow/unit/io/db.json +0 -15
  165. package/dist/js/example/workflow/unit/io/object_storage.json +0 -12
  166. package/dist/js/example/workflow/unit/io.json +0 -41
  167. package/dist/js/example/workflow/unit/map.json +0 -16
  168. package/dist/js/example/workflow/unit/processing.json +0 -13
  169. package/dist/js/example/workflow/unit/reduce.json +0 -16
  170. package/dist/js/example/workflow/unit/runtime/runtime_items.json +0 -14
  171. package/dist/js/example/workflow.json +0 -129
  172. package/dist/js/schema/3pse/db/nist_jarvis/2024.3.13/atoms.json +0 -79
  173. package/dist/js/schema/3pse/db/nist_jarvis/2024.3.13/db_entry.json +0 -91
  174. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/atomic_positions.json +0 -72
  175. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/atomic_species.json +0 -30
  176. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/cell.json +0 -89
  177. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/cell_parameters.json +0 -54
  178. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/control.json +0 -181
  179. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/electrons.json +0 -163
  180. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/hubbard.json +0 -219
  181. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/ions.json +0 -216
  182. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/k_points.json +0 -87
  183. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x/system.json +0 -652
  184. package/dist/js/schema/3pse/file/applications/espresso/7.2/pw.x.json +0 -1776
  185. package/dist/js/schema/core/abstract/2d_data.json +0 -31
  186. package/dist/js/schema/core/abstract/2d_plot.json +0 -74
  187. package/dist/js/schema/core/abstract/3d_grid.json +0 -32
  188. package/dist/js/schema/core/abstract/3d_tensor.json +0 -18
  189. package/dist/js/schema/core/abstract/3d_vector_basis.json +0 -43
  190. package/dist/js/schema/core/abstract/point.json +0 -11
  191. package/dist/js/schema/core/abstract/vector.json +0 -27
  192. package/dist/js/schema/core/primitive/1d_data_series.json +0 -16
  193. package/dist/js/schema/core/primitive/3d_lattice.json +0 -40
  194. package/dist/js/schema/core/primitive/array_of_3_booleans.json +0 -11
  195. package/dist/js/schema/core/primitive/array_of_3_numbers.json +0 -11
  196. package/dist/js/schema/core/primitive/array_of_ids.json +0 -16
  197. package/dist/js/schema/core/primitive/array_of_strings.json +0 -11
  198. package/dist/js/schema/core/primitive/axis.json +0 -19
  199. package/dist/js/schema/core/primitive/group_info.json +0 -16
  200. package/dist/js/schema/core/primitive/integer_one_or_zero.json +0 -8
  201. package/dist/js/schema/core/primitive/linked_list/base_node.json +0 -36
  202. package/dist/js/schema/core/primitive/linked_list/named_node.json +0 -40
  203. package/dist/js/schema/core/primitive/linked_list/named_node_in_group.json +0 -48
  204. package/dist/js/schema/core/primitive/linked_list/node_with_type.json +0 -39
  205. package/dist/js/schema/core/primitive/linked_list.json +0 -171
  206. package/dist/js/schema/core/primitive/scalar.json +0 -14
  207. package/dist/js/schema/core/primitive/slugified_entry.json +0 -21
  208. package/dist/js/schema/core/primitive/slugified_entry_or_slug.json +0 -31
  209. package/dist/js/schema/core/primitive/string.json +0 -14
  210. package/dist/js/schema/core/reference/exabyte.json +0 -19
  211. package/dist/js/schema/core/reference/experiment/condition.json +0 -31
  212. package/dist/js/schema/core/reference/experiment/location.json +0 -20
  213. package/dist/js/schema/core/reference/experiment.json +0 -249
  214. package/dist/js/schema/core/reference/literature/name.json +0 -24
  215. package/dist/js/schema/core/reference/literature/pages.json +0 -17
  216. package/dist/js/schema/core/reference/literature.json +0 -131
  217. package/dist/js/schema/core/reference/modeling/exabyte.json +0 -46
  218. package/dist/js/schema/core/reference/modeling.json +0 -52
  219. package/dist/js/schema/core/reference.json +0 -436
  220. package/dist/js/schema/core/reusable/atomic_data/per_orbital.json +0 -22
  221. package/dist/js/schema/core/reusable/atomic_data/per_orbital_pair.json +0 -39
  222. package/dist/js/schema/core/reusable/atomic_data/value_number.json +0 -13
  223. package/dist/js/schema/core/reusable/atomic_data/value_string.json +0 -13
  224. package/dist/js/schema/core/reusable/atomic_data_per_orbital_numeric.json +0 -26
  225. package/dist/js/schema/core/reusable/atomic_data_per_orbital_pair_numeric.json +0 -43
  226. package/dist/js/schema/core/reusable/atomic_orbital.json +0 -32
  227. package/dist/js/schema/core/reusable/atomic_scalars.json +0 -29
  228. package/dist/js/schema/core/reusable/atomic_strings.json +0 -19
  229. package/dist/js/schema/core/reusable/atomic_vectors.json +0 -42
  230. package/dist/js/schema/core/reusable/band_gap.json +0 -64
  231. package/dist/js/schema/core/reusable/categories.json +0 -159
  232. package/dist/js/schema/core/reusable/category_path.json +0 -7
  233. package/dist/js/schema/core/reusable/dielectric_tensor_component.json +0 -46
  234. package/dist/js/schema/core/reusable/energy.json +0 -39
  235. package/dist/js/schema/core/reusable/file_metadata.json +0 -21
  236. package/dist/js/schema/core/reusable/frequency_function_matrix.json +0 -30
  237. package/dist/js/schema/core/reusable/object_storage_container_data.json +0 -32
  238. package/dist/js/schema/definitions/units.json +0 -103
  239. package/dist/js/schema/element.json +0 -103
  240. package/dist/js/schema/in_memory_entity/base.json +0 -65
  241. package/dist/js/schema/in_memory_entity/defaultable.json +0 -70
  242. package/dist/js/schema/in_memory_entity/named.json +0 -69
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  245. package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +0 -194
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  247. package/dist/js/schema/job/compute.json +0 -178
  248. package/dist/js/schema/job.json +0 -6866
  249. package/dist/js/schema/material/conventional.json +0 -11
  250. package/dist/js/schema/material.json +0 -645
  251. package/dist/js/schema/method/categorized_method.json +0 -221
  252. package/dist/js/schema/method/method_parameters.json +0 -47
  253. package/dist/js/schema/method/unit_method.json +0 -191
  254. package/dist/js/schema/method.json +0 -28
  255. package/dist/js/schema/methods_category/mathematical/diff/enum_options.json +0 -8
  256. package/dist/js/schema/methods_category/mathematical/diff/fd.json +0 -165
  257. package/dist/js/schema/methods_category/mathematical/diff.json +0 -162
  258. package/dist/js/schema/methods_category/mathematical/discr/enum_options.json +0 -8
  259. package/dist/js/schema/methods_category/mathematical/discr/mesh/enum_options.json +0 -18
  260. package/dist/js/schema/methods_category/mathematical/discr/mesh/hybrid.json +0 -168
  261. package/dist/js/schema/methods_category/mathematical/discr/mesh/nstruct.json +0 -168
  262. package/dist/js/schema/methods_category/mathematical/discr/mesh/struct/cartesian.json +0 -171
  263. package/dist/js/schema/methods_category/mathematical/discr/mesh/struct/enum_options.json +0 -8
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  267. package/dist/js/schema/methods_category/mathematical/enum_options.json +0 -45
  268. package/dist/js/schema/methods_category/mathematical/fapprx/basisexp.json +0 -165
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  276. package/dist/js/schema/methods_category/mathematical/intgr/analytic/enum_options.json +0 -20
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  279. package/dist/js/schema/methods_category/mathematical/intgr/diffeq/enum_options.json +0 -13
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  563. package/dist/js/schemas.json +0 -1
  564. package/modules.d.ts +0 -5
@@ -1,847 +0,0 @@
1
- {
2
- "$id": "software-directory/modeling/unit/execution",
3
- "$schema": "http://json-schema.org/draft-07/schema#",
4
- "title": "execution unit schema for physics-based simulation engines (defined using espresso as example)",
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- "type": "object",
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- "required": [
7
- "application",
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- "flowchartId",
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- "input",
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- "type"
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- ],
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- "additionalProperties": true,
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- "properties": {
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- "type": {
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- "enum": [
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- "execution"
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- ],
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- "description": "type of the unit",
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- "type": "string"
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- },
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- "application": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "application schema (base)",
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- "type": "object",
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- "additionalProperties": true,
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- "properties": {
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- "shortName": {
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- "description": "The short name of the application. e.g. qe",
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- "type": "string"
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- },
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- "summary": {
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- "description": "Application's short description.",
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- "type": "string"
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- },
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- "version": {
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- "description": "Application version. e.g. 5.3.5",
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- "type": "string"
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- },
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- "build": {
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- "description": "Application build. e.g. VTST",
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- "type": "string"
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- },
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- "hasAdvancedComputeOptions": {
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- "description": "Whether advanced compute options are present",
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- "type": "boolean"
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- },
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- "isLicensed": {
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- "description": "Whether licensing is present",
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- "type": "boolean"
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- },
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- "_id": {
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- "description": "entity identity",
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- "type": "string"
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- },
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- "slug": {
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- "description": "entity slug",
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- "type": "string"
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- },
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- "systemName": {
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- "type": "string"
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- },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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- "schemaVersion": {
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- "description": "entity's schema version. Used to distinct between different schemas.",
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- "type": "string",
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- "default": "2022.8.16"
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- },
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- "name": {
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- "description": "entity name",
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- "type": "string"
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- },
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- "isDefault": {
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- "description": "Identifies that entity is defaultable",
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- "type": "boolean",
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- "default": false
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- }
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- }
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- },
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- "executable": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "executable schema",
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- "type": "object",
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- "required": [
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- "name"
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- ],
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- "properties": {
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- "name": {
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- "description": "The name of the executable. e.g. pw.x",
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- "type": "string"
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- },
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- "applicationId": {
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- "description": "_ids of the application this executable belongs to",
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- "type": "array",
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- "items": {
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- "type": "string"
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- }
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- },
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- "hasAdvancedComputeOptions": {
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- "description": "Whether advanced compute options are present",
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- "type": "boolean"
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- },
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- "_id": {
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- "description": "entity identity",
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- "type": "string"
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- },
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- "slug": {
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- "description": "entity slug",
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- "type": "string"
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- },
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- "systemName": {
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- "type": "string"
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- },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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- "schemaVersion": {
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- "description": "entity's schema version. Used to distinct between different schemas.",
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- "type": "string",
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- "default": "2022.8.16"
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- },
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- "isDefault": {
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- "description": "Identifies that entity is defaultable",
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- "type": "boolean",
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- "default": false
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- },
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- "preProcessors": {
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- "description": "names of the pre-processors for this calculation",
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "runtime item schema",
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- "oneOf": [
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "name result schema",
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- "type": "object",
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- "properties": {
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- "name": {
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- "description": "The name of this item. e.g. scf_accuracy",
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- "type": "string"
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- }
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- },
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- "required": [
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- "name"
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- ]
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- },
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "RuntimeItemString",
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- "description": "name of runtime item in shortened notation",
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- "type": "string"
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- }
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- ]
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- }
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- },
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- "postProcessors": {
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- "description": "names of the post-processors for this calculation",
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "runtime item schema",
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- "oneOf": [
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "name result schema",
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- "type": "object",
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- "properties": {
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- "name": {
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- "description": "The name of this item. e.g. scf_accuracy",
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- "type": "string"
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- }
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- },
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- "required": [
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- "name"
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- ]
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- },
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "RuntimeItemString",
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- "description": "name of runtime item in shortened notation",
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- "type": "string"
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- }
261
- ]
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- }
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- },
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- "monitors": {
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- "description": "names of the monitors for this calculation",
266
- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "runtime item schema",
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- "oneOf": [
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "name result schema",
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- "type": "object",
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- "properties": {
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- "name": {
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- "description": "The name of this item. e.g. scf_accuracy",
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- "type": "string"
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- }
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- },
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- "required": [
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- "name"
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- ]
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- },
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "RuntimeItemString",
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- "description": "name of runtime item in shortened notation",
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- "type": "string"
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- }
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- ]
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- }
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- },
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- "results": {
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- "description": "names of the results for this calculation",
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "runtime item schema",
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- "oneOf": [
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "name result schema",
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- "type": "object",
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- "properties": {
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- "name": {
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- "description": "The name of this item. e.g. scf_accuracy",
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- "type": "string"
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- }
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- },
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- "required": [
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- "name"
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- ]
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- },
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- {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "RuntimeItemString",
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- "description": "name of runtime item in shortened notation",
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- "type": "string"
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- }
321
- ]
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- }
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- }
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- }
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- },
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- "flavor": {
327
- "$schema": "http://json-schema.org/draft-07/schema#",
328
- "title": "flavor schema",
329
- "type": "object",
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- "properties": {
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- "executableId": {
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- "description": "_id of the executable this flavor belongs to",
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- "type": "string"
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- },
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- "executableName": {
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- "description": "name of the executable this flavor belongs to",
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- "type": "string"
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- },
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- "applicationName": {
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- "description": "name of the application this flavor belongs to",
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- "type": "string"
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- },
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- "input": {
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- "title": "execution unit input schema",
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
348
- "title": "execution unit input id item schema for physics-based simulation engines",
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- "type": "object",
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- "additionalProperties": false,
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- "properties": {
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- "templateId": {
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- "type": "string"
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- },
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- "templateName": {
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- "type": "string"
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- },
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- "name": {
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- "description": "name of the resulting input file, if different than template name",
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- "type": "string"
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- }
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- }
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- }
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- },
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- "_id": {
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- "description": "entity identity",
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- "type": "string"
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- },
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- "slug": {
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- "description": "entity slug",
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- "type": "string"
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- },
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- "systemName": {
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- "type": "string"
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- },
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- "consistencyChecks": {
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- "type": "array",
378
- "items": {
379
- "$schema": "http://json-schema.org/draft-07/schema#",
380
- "title": "consistency check",
381
- "type": "object",
382
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
383
- "required": [
384
- "key",
385
- "name",
386
- "severity",
387
- "message"
388
- ],
389
- "properties": {
390
- "key": {
391
- "type": "string",
392
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
393
- },
394
- "name": {
395
- "enum": [
396
- "default",
397
- "atomsTooClose",
398
- "atomsOverlap"
399
- ],
400
- "description": "Name of the consistency check that is performed, which is listed in an enum."
401
- },
402
- "severity": {
403
- "enum": [
404
- "info",
405
- "warning",
406
- "error"
407
- ],
408
- "description": "Severity level of the problem, which is used in UI to differentiate."
409
- },
410
- "message": {
411
- "type": "string",
412
- "description": "Message generated by the consistency check describing the problem."
413
- }
414
- }
415
- }
416
- },
417
- "schemaVersion": {
418
- "description": "entity's schema version. Used to distinct between different schemas.",
419
- "type": "string",
420
- "default": "2022.8.16"
421
- },
422
- "name": {
423
- "description": "entity name",
424
- "type": "string"
425
- },
426
- "isDefault": {
427
- "description": "Identifies that entity is defaultable",
428
- "type": "boolean",
429
- "default": false
430
- },
431
- "preProcessors": {
432
- "description": "names of the pre-processors for this calculation",
433
- "type": "array",
434
- "items": {
435
- "$schema": "http://json-schema.org/draft-07/schema#",
436
- "title": "runtime item schema",
437
- "oneOf": [
438
- {
439
- "$schema": "http://json-schema.org/draft-07/schema#",
440
- "title": "name result schema",
441
- "type": "object",
442
- "properties": {
443
- "name": {
444
- "description": "The name of this item. e.g. scf_accuracy",
445
- "type": "string"
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- }
447
- },
448
- "required": [
449
- "name"
450
- ]
451
- },
452
- {
453
- "$schema": "http://json-schema.org/draft-07/schema#",
454
- "title": "RuntimeItemString",
455
- "description": "name of runtime item in shortened notation",
456
- "type": "string"
457
- }
458
- ]
459
- }
460
- },
461
- "postProcessors": {
462
- "description": "names of the post-processors for this calculation",
463
- "type": "array",
464
- "items": {
465
- "$schema": "http://json-schema.org/draft-07/schema#",
466
- "title": "runtime item schema",
467
- "oneOf": [
468
- {
469
- "$schema": "http://json-schema.org/draft-07/schema#",
470
- "title": "name result schema",
471
- "type": "object",
472
- "properties": {
473
- "name": {
474
- "description": "The name of this item. e.g. scf_accuracy",
475
- "type": "string"
476
- }
477
- },
478
- "required": [
479
- "name"
480
- ]
481
- },
482
- {
483
- "$schema": "http://json-schema.org/draft-07/schema#",
484
- "title": "RuntimeItemString",
485
- "description": "name of runtime item in shortened notation",
486
- "type": "string"
487
- }
488
- ]
489
- }
490
- },
491
- "monitors": {
492
- "description": "names of the monitors for this calculation",
493
- "type": "array",
494
- "items": {
495
- "$schema": "http://json-schema.org/draft-07/schema#",
496
- "title": "runtime item schema",
497
- "oneOf": [
498
- {
499
- "$schema": "http://json-schema.org/draft-07/schema#",
500
- "title": "name result schema",
501
- "type": "object",
502
- "properties": {
503
- "name": {
504
- "description": "The name of this item. e.g. scf_accuracy",
505
- "type": "string"
506
- }
507
- },
508
- "required": [
509
- "name"
510
- ]
511
- },
512
- {
513
- "$schema": "http://json-schema.org/draft-07/schema#",
514
- "title": "RuntimeItemString",
515
- "description": "name of runtime item in shortened notation",
516
- "type": "string"
517
- }
518
- ]
519
- }
520
- },
521
- "results": {
522
- "description": "names of the results for this calculation",
523
- "type": "array",
524
- "items": {
525
- "$schema": "http://json-schema.org/draft-07/schema#",
526
- "title": "runtime item schema",
527
- "oneOf": [
528
- {
529
- "$schema": "http://json-schema.org/draft-07/schema#",
530
- "title": "name result schema",
531
- "type": "object",
532
- "properties": {
533
- "name": {
534
- "description": "The name of this item. e.g. scf_accuracy",
535
- "type": "string"
536
- }
537
- },
538
- "required": [
539
- "name"
540
- ]
541
- },
542
- {
543
- "$schema": "http://json-schema.org/draft-07/schema#",
544
- "title": "RuntimeItemString",
545
- "description": "name of runtime item in shortened notation",
546
- "type": "string"
547
- }
548
- ]
549
- }
550
- }
551
- }
552
- },
553
- "input": {
554
- "description": "unit input (type to be specified by the application's execution unit)",
555
- "title": "execution unit input schema",
556
- "type": "array",
557
- "items": {
558
- "oneOf": [
559
- {
560
- "$schema": "http://json-schema.org/draft-07/schema#",
561
- "title": "execution unit input item schema for physics-based simulation engines",
562
- "type": "object",
563
- "properties": {
564
- "name": {
565
- "description": "Input file name. e.g. pw_scf.in",
566
- "type": "string"
567
- },
568
- "content": {
569
- "description": "Content of the input file. e.g. &CONTROL calculation='scf' ...",
570
- "type": "string"
571
- }
572
- },
573
- "required": [
574
- "name",
575
- "content"
576
- ]
577
- },
578
- {
579
- "$schema": "http://json-schema.org/draft-07/schema#",
580
- "title": "execution unit input id item schema for physics-based simulation engines",
581
- "type": "object",
582
- "properties": {
583
- "templateId": {
584
- "type": "string"
585
- },
586
- "templateName": {
587
- "type": "string"
588
- },
589
- "name": {
590
- "description": "name of the resulting input file, if different than template name",
591
- "type": "string"
592
- }
593
- },
594
- "additionalProperties": false
595
- }
596
- ]
597
- }
598
- },
599
- "_id": {
600
- "type": "string",
601
- "description": "entity identity"
602
- },
603
- "isDraft": {
604
- "type": "boolean"
605
- },
606
- "name": {
607
- "description": "name of the unit. e.g. pw_scf",
608
- "type": "string"
609
- },
610
- "status": {
611
- "description": "Status of the unit.",
612
- "type": "string",
613
- "enum": [
614
- "idle",
615
- "active",
616
- "warning",
617
- "error",
618
- "finished"
619
- ]
620
- },
621
- "head": {
622
- "description": "Whether this unit is the first one to be executed.",
623
- "type": "boolean"
624
- },
625
- "flowchartId": {
626
- "description": "Identity of the unit in the workflow. Used to trace the execution flow of the workflow.",
627
- "type": "string"
628
- },
629
- "next": {
630
- "description": "Next unit's flowchartId. If empty, the current unit is the last.",
631
- "type": "string"
632
- },
633
- "enableRender": {
634
- "description": "Whether Rupy should attempt to use Jinja templating to add context variables into the unit",
635
- "type": "boolean"
636
- },
637
- "context": {
638
- "type": "object"
639
- },
640
- "slug": {
641
- "description": "entity slug",
642
- "type": "string"
643
- },
644
- "systemName": {
645
- "type": "string"
646
- },
647
- "consistencyChecks": {
648
- "type": "array",
649
- "items": {
650
- "$schema": "http://json-schema.org/draft-07/schema#",
651
- "title": "consistency check",
652
- "type": "object",
653
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
654
- "required": [
655
- "key",
656
- "name",
657
- "severity",
658
- "message"
659
- ],
660
- "properties": {
661
- "key": {
662
- "type": "string",
663
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
664
- },
665
- "name": {
666
- "enum": [
667
- "default",
668
- "atomsTooClose",
669
- "atomsOverlap"
670
- ],
671
- "description": "Name of the consistency check that is performed, which is listed in an enum."
672
- },
673
- "severity": {
674
- "enum": [
675
- "info",
676
- "warning",
677
- "error"
678
- ],
679
- "description": "Severity level of the problem, which is used in UI to differentiate."
680
- },
681
- "message": {
682
- "type": "string",
683
- "description": "Message generated by the consistency check describing the problem."
684
- }
685
- }
686
- }
687
- },
688
- "schemaVersion": {
689
- "description": "entity's schema version. Used to distinct between different schemas.",
690
- "type": "string",
691
- "default": "2022.8.16"
692
- },
693
- "isDefault": {
694
- "description": "Identifies that entity is defaultable",
695
- "type": "boolean",
696
- "default": false
697
- },
698
- "preProcessors": {
699
- "description": "names of the pre-processors for this calculation",
700
- "type": "array",
701
- "items": {
702
- "$schema": "http://json-schema.org/draft-07/schema#",
703
- "title": "runtime item schema",
704
- "oneOf": [
705
- {
706
- "$schema": "http://json-schema.org/draft-07/schema#",
707
- "title": "name result schema",
708
- "type": "object",
709
- "properties": {
710
- "name": {
711
- "description": "The name of this item. e.g. scf_accuracy",
712
- "type": "string"
713
- }
714
- },
715
- "required": [
716
- "name"
717
- ]
718
- },
719
- {
720
- "$schema": "http://json-schema.org/draft-07/schema#",
721
- "title": "RuntimeItemString",
722
- "description": "name of runtime item in shortened notation",
723
- "type": "string"
724
- }
725
- ]
726
- }
727
- },
728
- "postProcessors": {
729
- "description": "names of the post-processors for this calculation",
730
- "type": "array",
731
- "items": {
732
- "$schema": "http://json-schema.org/draft-07/schema#",
733
- "title": "runtime item schema",
734
- "oneOf": [
735
- {
736
- "$schema": "http://json-schema.org/draft-07/schema#",
737
- "title": "name result schema",
738
- "type": "object",
739
- "properties": {
740
- "name": {
741
- "description": "The name of this item. e.g. scf_accuracy",
742
- "type": "string"
743
- }
744
- },
745
- "required": [
746
- "name"
747
- ]
748
- },
749
- {
750
- "$schema": "http://json-schema.org/draft-07/schema#",
751
- "title": "RuntimeItemString",
752
- "description": "name of runtime item in shortened notation",
753
- "type": "string"
754
- }
755
- ]
756
- }
757
- },
758
- "monitors": {
759
- "description": "names of the monitors for this calculation",
760
- "type": "array",
761
- "items": {
762
- "$schema": "http://json-schema.org/draft-07/schema#",
763
- "title": "runtime item schema",
764
- "oneOf": [
765
- {
766
- "$schema": "http://json-schema.org/draft-07/schema#",
767
- "title": "name result schema",
768
- "type": "object",
769
- "properties": {
770
- "name": {
771
- "description": "The name of this item. e.g. scf_accuracy",
772
- "type": "string"
773
- }
774
- },
775
- "required": [
776
- "name"
777
- ]
778
- },
779
- {
780
- "$schema": "http://json-schema.org/draft-07/schema#",
781
- "title": "RuntimeItemString",
782
- "description": "name of runtime item in shortened notation",
783
- "type": "string"
784
- }
785
- ]
786
- }
787
- },
788
- "results": {
789
- "description": "names of the results for this calculation",
790
- "type": "array",
791
- "items": {
792
- "$schema": "http://json-schema.org/draft-07/schema#",
793
- "title": "runtime item schema",
794
- "oneOf": [
795
- {
796
- "$schema": "http://json-schema.org/draft-07/schema#",
797
- "title": "name result schema",
798
- "type": "object",
799
- "properties": {
800
- "name": {
801
- "description": "The name of this item. e.g. scf_accuracy",
802
- "type": "string"
803
- }
804
- },
805
- "required": [
806
- "name"
807
- ]
808
- },
809
- {
810
- "$schema": "http://json-schema.org/draft-07/schema#",
811
- "title": "RuntimeItemString",
812
- "description": "name of runtime item in shortened notation",
813
- "type": "string"
814
- }
815
- ]
816
- }
817
- },
818
- "tags": {
819
- "description": "entity tags",
820
- "type": "array",
821
- "items": {
822
- "type": "string"
823
- }
824
- },
825
- "statusTrack": {
826
- "type": "array",
827
- "items": {
828
- "type": "object",
829
- "required": [
830
- "trackedAt",
831
- "status"
832
- ],
833
- "properties": {
834
- "trackedAt": {
835
- "type": "number"
836
- },
837
- "status": {
838
- "type": "string"
839
- },
840
- "repetition": {
841
- "type": "number"
842
- }
843
- }
844
- }
845
- }
846
- }
847
- }