@mat3ra/esse 2024.12.19-1 → 2025.4.3-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (107) hide show
  1. package/.pre-commit-config.yaml +3 -2
  2. package/dist/js/schema/core/primitive/integer_positive_single_digit.json +8 -0
  3. package/dist/js/schema/core/reference/modeling/exabyte.json +3 -0
  4. package/dist/js/schema/core/reference/modeling.json +3 -0
  5. package/dist/js/schema/core/reference.json +3 -0
  6. package/dist/js/schema/definitions/constants.json +52 -0
  7. package/dist/js/schema/definitions/units.json +41 -5
  8. package/dist/js/schema/element.json +4 -5
  9. package/dist/js/schema/in_memory_entity/base.json +0 -41
  10. package/dist/js/schema/in_memory_entity/defaultable.json +0 -41
  11. package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +74 -0
  12. package/dist/js/schema/in_memory_entity/named.json +0 -41
  13. package/dist/js/schema/in_memory_entity/named_defaultable.json +0 -41
  14. package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json +0 -41
  15. package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +0 -41
  16. package/dist/js/schema/job/base.json +9 -41
  17. package/dist/js/schema/job.json +9 -1025
  18. package/dist/js/schema/material/consistency_check.json +40 -0
  19. package/dist/js/schema/material.json +52 -82
  20. package/dist/js/schema/project.json +0 -41
  21. package/dist/js/schema/properties_directory/elemental/atomic_radius.json +4 -5
  22. package/dist/js/schema/properties_directory/non_scalar/average_potential_profile.json +4 -5
  23. package/dist/js/schema/properties_directory/non_scalar/band_structure.json +2 -10
  24. package/dist/js/schema/properties_directory/non_scalar/phonon_dispersions.json +2 -10
  25. package/dist/js/schema/properties_directory/structural/basis/atomic_coordinates.json +4 -5
  26. package/dist/js/schema/properties_directory/structural/basis/atomic_label.json +19 -0
  27. package/dist/js/schema/properties_directory/structural/basis.json +19 -50
  28. package/dist/js/schema/properties_directory/structural/lattice/lattice_bravais.json +12 -6
  29. package/dist/js/schema/properties_directory/structural/lattice/lattice_vectors.json +4 -5
  30. package/dist/js/schema/properties_directory/structural/lattice/type_enum.json +3 -2
  31. package/dist/js/schema/properties_directory/structural/lattice/type_extended_enum.json +3 -2
  32. package/dist/js/schema/properties_directory/structural/lattice.json +16 -16
  33. package/dist/js/schema/property/base.json +0 -41
  34. package/dist/js/schema/property/meta.json +0 -41
  35. package/dist/js/schema/property/raw.json +0 -41
  36. package/dist/js/schema/software/application.json +0 -41
  37. package/dist/js/schema/software/executable.json +0 -41
  38. package/dist/js/schema/software/flavor.json +0 -41
  39. package/dist/js/schema/software/template.json +0 -41
  40. package/dist/js/schema/software_directory/ml/unit/execution/evaluate/cross_validate.json +0 -164
  41. package/dist/js/schema/software_directory/ml/unit/execution/initialize.json +0 -164
  42. package/dist/js/schema/software_directory/ml/unit/execution/score.json +0 -164
  43. package/dist/js/schema/software_directory/ml/unit/execution/train.json +0 -164
  44. package/dist/js/schema/software_directory/ml/unit/execution.json +0 -656
  45. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation/manipulation.json +0 -41
  46. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.json +0 -41
  47. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation.json +0 -41
  48. package/dist/js/schema/software_directory/ml/unit/processing/feature_selection/filter_based.json +0 -41
  49. package/dist/js/schema/software_directory/ml/unit/processing/feature_selection.json +0 -41
  50. package/dist/js/schema/software_directory/ml/unit/processing.json +0 -82
  51. package/dist/js/schema/software_directory/modeling/deepmd.json +0 -41
  52. package/dist/js/schema/software_directory/modeling/nwchem.json +0 -41
  53. package/dist/js/schema/software_directory/modeling/unit/execution.json +0 -164
  54. package/dist/js/schema/software_directory/modeling/vasp.json +0 -41
  55. package/dist/js/schema/software_directory/scripting/jupyter_lab.json +0 -41
  56. package/dist/js/schema/software_directory/scripting/python.json +0 -41
  57. package/dist/js/schema/software_directory/scripting/shell.json +0 -41
  58. package/dist/js/schema/software_directory/scripting/unit/execution.json +0 -164
  59. package/dist/js/schema/system/_material.json +3 -0
  60. package/dist/js/schema/system/_parent_job.json +3 -0
  61. package/dist/js/schema/system/_project.json +3 -0
  62. package/dist/js/schema/system/consistency_check.json +1 -5
  63. package/dist/js/schema/system/creator.json +3 -0
  64. package/dist/js/schema/system/creator_account.json +3 -0
  65. package/dist/js/schema/system/description.json +1 -1
  66. package/dist/js/schema/system/entity_reference.json +3 -0
  67. package/dist/js/schema/system/has_consistency_check.json +46 -0
  68. package/dist/js/schema/system/in_set.json +3 -0
  69. package/dist/js/schema/system/job_extended.json +6 -0
  70. package/dist/js/schema/system/owner.json +3 -0
  71. package/dist/js/schema/workflow/base.json +0 -41
  72. package/dist/js/schema/workflow/subworkflow/unit.json +0 -410
  73. package/dist/js/schema/workflow/subworkflow.json +0 -451
  74. package/dist/js/schema/workflow/unit/assertion.json +0 -41
  75. package/dist/js/schema/workflow/unit/assignment.json +0 -41
  76. package/dist/js/schema/workflow/unit/base.json +0 -41
  77. package/dist/js/schema/workflow/unit/condition.json +0 -41
  78. package/dist/js/schema/workflow/unit/execution.json +0 -164
  79. package/dist/js/schema/workflow/unit/io.json +0 -41
  80. package/dist/js/schema/workflow/unit/map.json +0 -41
  81. package/dist/js/schema/workflow/unit/processing.json +0 -41
  82. package/dist/js/schema/workflow/unit/reduce.json +0 -41
  83. package/dist/js/schema/workflow/unit/subworkflow.json +0 -41
  84. package/dist/js/schema/workflow/unit.json +0 -492
  85. package/dist/js/schema/workflow.json +0 -984
  86. package/dist/js/schemas.json +1 -1
  87. package/dist/js/types.d.ts +221 -3125
  88. package/package.json +3 -3
  89. package/schema/core/primitive/integer_positive_single_digit.json +8 -0
  90. package/schema/definitions/constants.json +52 -0
  91. package/schema/definitions/units.json +41 -5
  92. package/schema/in_memory_entity/base.json +0 -6
  93. package/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +13 -0
  94. package/schema/material/consistency_check.json +22 -0
  95. package/schema/material.json +6 -0
  96. package/schema/properties_directory/non-scalar/band_structure.json +1 -1
  97. package/schema/properties_directory/non-scalar/phonon_dispersions.json +1 -1
  98. package/schema/properties_directory/structural/basis/atomic_label.json +15 -0
  99. package/schema/properties_directory/structural/basis.json +12 -20
  100. package/schema/properties_directory/structural/lattice/lattice_bravais.json +7 -10
  101. package/schema/properties_directory/structural/lattice/type_enum.json +3 -2
  102. package/schema/properties_directory/structural/lattice/type_extended_enum.json +3 -2
  103. package/schema/properties_directory/structural/lattice.json +1 -8
  104. package/schema/system/consistency_check.json +1 -5
  105. package/schema/system/description.json +1 -1
  106. package/schema/system/entity_reference.json +2 -1
  107. package/schema/system/has_consistency_check.json +16 -0
@@ -254,47 +254,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -550,47 +509,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -864,47 +782,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "description": "Message generated by the consistency check describing the problem."
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- ],
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "properties": {
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- "message": {
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "name": {
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- "severity": {
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- "consistencyChecks": {
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "severity",
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- ],
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- "properties": {
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- "key": {
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- "name": {
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- "enum": [
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- "message": {
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2261
- "type": "object",
2262
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
2263
- "required": [
2264
- "key",
2265
- "name",
2266
- "severity",
2267
- "message"
2268
- ],
2269
- "properties": {
2270
- "key": {
2271
- "type": "string",
2272
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
2273
- },
2274
- "name": {
2275
- "enum": [
2276
- "default",
2277
- "atomsTooClose",
2278
- "atomsOverlap"
2279
- ],
2280
- "description": "Name of the consistency check that is performed, which is listed in an enum."
2281
- },
2282
- "severity": {
2283
- "enum": [
2284
- "info",
2285
- "warning",
2286
- "error"
2287
- ],
2288
- "description": "Severity level of the problem, which is used in UI to differentiate."
2289
- },
2290
- "message": {
2291
- "type": "string",
2292
- "description": "Message generated by the consistency check describing the problem."
2293
- }
2294
- }
2295
- }
2296
- },
2297
1928
  "schemaVersion": {
2298
1929
  "description": "entity's schema version. Used to distinct between different schemas.",
2299
1930
  "type": "string",
@@ -2536,47 +2167,6 @@
2536
2167
  "systemName": {
2537
2168
  "type": "string"
2538
2169
  },
2539
- "consistencyChecks": {
2540
- "type": "array",
2541
- "items": {
2542
- "$schema": "http://json-schema.org/draft-07/schema#",
2543
- "title": "consistency check",
2544
- "type": "object",
2545
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
2546
- "required": [
2547
- "key",
2548
- "name",
2549
- "severity",
2550
- "message"
2551
- ],
2552
- "properties": {
2553
- "key": {
2554
- "type": "string",
2555
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
2556
- },
2557
- "name": {
2558
- "enum": [
2559
- "default",
2560
- "atomsTooClose",
2561
- "atomsOverlap"
2562
- ],
2563
- "description": "Name of the consistency check that is performed, which is listed in an enum."
2564
- },
2565
- "severity": {
2566
- "enum": [
2567
- "info",
2568
- "warning",
2569
- "error"
2570
- ],
2571
- "description": "Severity level of the problem, which is used in UI to differentiate."
2572
- },
2573
- "message": {
2574
- "type": "string",
2575
- "description": "Message generated by the consistency check describing the problem."
2576
- }
2577
- }
2578
- }
2579
- },
2580
2170
  "schemaVersion": {
2581
2171
  "description": "entity's schema version. Used to distinct between different schemas.",
2582
2172
  "type": "string",
@@ -2835,47 +2425,6 @@
2835
2425
  "systemName": {
2836
2426
  "type": "string"
2837
2427
  },
2838
- "consistencyChecks": {
2839
- "type": "array",
2840
- "items": {
2841
- "$schema": "http://json-schema.org/draft-07/schema#",
2842
- "title": "consistency check",
2843
- "type": "object",
2844
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
2845
- "required": [
2846
- "key",
2847
- "name",
2848
- "severity",
2849
- "message"
2850
- ],
2851
- "properties": {
2852
- "key": {
2853
- "type": "string",
2854
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
2855
- },
2856
- "name": {
2857
- "enum": [
2858
- "default",
2859
- "atomsTooClose",
2860
- "atomsOverlap"
2861
- ],
2862
- "description": "Name of the consistency check that is performed, which is listed in an enum."
2863
- },
2864
- "severity": {
2865
- "enum": [
2866
- "info",
2867
- "warning",
2868
- "error"
2869
- ],
2870
- "description": "Severity level of the problem, which is used in UI to differentiate."
2871
- },
2872
- "message": {
2873
- "type": "string",
2874
- "description": "Message generated by the consistency check describing the problem."
2875
- }
2876
- }
2877
- }
2878
- },
2879
2428
  "schemaVersion": {
2880
2429
  "description": "entity's schema version. Used to distinct between different schemas.",
2881
2430
  "type": "string",
@@ -3329,47 +2878,6 @@
3329
2878
  "systemName": {
3330
2879
  "type": "string"
3331
2880
  },
3332
- "consistencyChecks": {
3333
- "type": "array",
3334
- "items": {
3335
- "$schema": "http://json-schema.org/draft-07/schema#",
3336
- "title": "consistency check",
3337
- "type": "object",
3338
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
3339
- "required": [
3340
- "key",
3341
- "name",
3342
- "severity",
3343
- "message"
3344
- ],
3345
- "properties": {
3346
- "key": {
3347
- "type": "string",
3348
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
3349
- },
3350
- "name": {
3351
- "enum": [
3352
- "default",
3353
- "atomsTooClose",
3354
- "atomsOverlap"
3355
- ],
3356
- "description": "Name of the consistency check that is performed, which is listed in an enum."
3357
- },
3358
- "severity": {
3359
- "enum": [
3360
- "info",
3361
- "warning",
3362
- "error"
3363
- ],
3364
- "description": "Severity level of the problem, which is used in UI to differentiate."
3365
- },
3366
- "message": {
3367
- "type": "string",
3368
- "description": "Message generated by the consistency check describing the problem."
3369
- }
3370
- }
3371
- }
3372
- },
3373
2881
  "schemaVersion": {
3374
2882
  "description": "entity's schema version. Used to distinct between different schemas.",
3375
2883
  "type": "string",
@@ -3625,47 +3133,6 @@
3625
3133
  "systemName": {
3626
3134
  "type": "string"
3627
3135
  },
3628
- "consistencyChecks": {
3629
- "type": "array",
3630
- "items": {
3631
- "$schema": "http://json-schema.org/draft-07/schema#",
3632
- "title": "consistency check",
3633
- "type": "object",
3634
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
3635
- "required": [
3636
- "key",
3637
- "name",
3638
- "severity",
3639
- "message"
3640
- ],
3641
- "properties": {
3642
- "key": {
3643
- "type": "string",
3644
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
3645
- },
3646
- "name": {
3647
- "enum": [
3648
- "default",
3649
- "atomsTooClose",
3650
- "atomsOverlap"
3651
- ],
3652
- "description": "Name of the consistency check that is performed, which is listed in an enum."
3653
- },
3654
- "severity": {
3655
- "enum": [
3656
- "info",
3657
- "warning",
3658
- "error"
3659
- ],
3660
- "description": "Severity level of the problem, which is used in UI to differentiate."
3661
- },
3662
- "message": {
3663
- "type": "string",
3664
- "description": "Message generated by the consistency check describing the problem."
3665
- }
3666
- }
3667
- }
3668
- },
3669
3136
  "schemaVersion": {
3670
3137
  "description": "entity's schema version. Used to distinct between different schemas.",
3671
3138
  "type": "string",
@@ -3939,47 +3406,6 @@
3939
3406
  "systemName": {
3940
3407
  "type": "string"
3941
3408
  },
3942
- "consistencyChecks": {
3943
- "type": "array",
3944
- "items": {
3945
- "$schema": "http://json-schema.org/draft-07/schema#",
3946
- "title": "consistency check",
3947
- "type": "object",
3948
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
3949
- "required": [
3950
- "key",
3951
- "name",
3952
- "severity",
3953
- "message"
3954
- ],
3955
- "properties": {
3956
- "key": {
3957
- "type": "string",
3958
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
3959
- },
3960
- "name": {
3961
- "enum": [
3962
- "default",
3963
- "atomsTooClose",
3964
- "atomsOverlap"
3965
- ],
3966
- "description": "Name of the consistency check that is performed, which is listed in an enum."
3967
- },
3968
- "severity": {
3969
- "enum": [
3970
- "info",
3971
- "warning",
3972
- "error"
3973
- ],
3974
- "description": "Severity level of the problem, which is used in UI to differentiate."
3975
- },
3976
- "message": {
3977
- "type": "string",
3978
- "description": "Message generated by the consistency check describing the problem."
3979
- }
3980
- }
3981
- }
3982
- },
3983
3409
  "schemaVersion": {
3984
3410
  "description": "entity's schema version. Used to distinct between different schemas.",
3985
3411
  "type": "string",
@@ -4215,47 +3641,6 @@
4215
3641
  "systemName": {
4216
3642
  "type": "string"
4217
3643
  },
4218
- "consistencyChecks": {
4219
- "type": "array",
4220
- "items": {
4221
- "$schema": "http://json-schema.org/draft-07/schema#",
4222
- "title": "consistency check",
4223
- "type": "object",
4224
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
4225
- "required": [
4226
- "key",
4227
- "name",
4228
- "severity",
4229
- "message"
4230
- ],
4231
- "properties": {
4232
- "key": {
4233
- "type": "string",
4234
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
4235
- },
4236
- "name": {
4237
- "enum": [
4238
- "default",
4239
- "atomsTooClose",
4240
- "atomsOverlap"
4241
- ],
4242
- "description": "Name of the consistency check that is performed, which is listed in an enum."
4243
- },
4244
- "severity": {
4245
- "enum": [
4246
- "info",
4247
- "warning",
4248
- "error"
4249
- ],
4250
- "description": "Severity level of the problem, which is used in UI to differentiate."
4251
- },
4252
- "message": {
4253
- "type": "string",
4254
- "description": "Message generated by the consistency check describing the problem."
4255
- }
4256
- }
4257
- }
4258
- },
4259
3644
  "schemaVersion": {
4260
3645
  "description": "entity's schema version. Used to distinct between different schemas.",
4261
3646
  "type": "string",
@@ -4476,47 +3861,6 @@
4476
3861
  "systemName": {
4477
3862
  "type": "string"
4478
3863
  },
4479
- "consistencyChecks": {
4480
- "type": "array",
4481
- "items": {
4482
- "$schema": "http://json-schema.org/draft-07/schema#",
4483
- "title": "consistency check",
4484
- "type": "object",
4485
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
4486
- "required": [
4487
- "key",
4488
- "name",
4489
- "severity",
4490
- "message"
4491
- ],
4492
- "properties": {
4493
- "key": {
4494
- "type": "string",
4495
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
4496
- },
4497
- "name": {
4498
- "enum": [
4499
- "default",
4500
- "atomsTooClose",
4501
- "atomsOverlap"
4502
- ],
4503
- "description": "Name of the consistency check that is performed, which is listed in an enum."
4504
- },
4505
- "severity": {
4506
- "enum": [
4507
- "info",
4508
- "warning",
4509
- "error"
4510
- ],
4511
- "description": "Severity level of the problem, which is used in UI to differentiate."
4512
- },
4513
- "message": {
4514
- "type": "string",
4515
- "description": "Message generated by the consistency check describing the problem."
4516
- }
4517
- }
4518
- }
4519
- },
4520
3864
  "schemaVersion": {
4521
3865
  "description": "entity's schema version. Used to distinct between different schemas.",
4522
3866
  "type": "string",
@@ -4567,47 +3911,6 @@
4567
3911
  "systemName": {
4568
3912
  "type": "string"
4569
3913
  },
4570
- "consistencyChecks": {
4571
- "type": "array",
4572
- "items": {
4573
- "$schema": "http://json-schema.org/draft-07/schema#",
4574
- "title": "consistency check",
4575
- "type": "object",
4576
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
4577
- "required": [
4578
- "key",
4579
- "name",
4580
- "severity",
4581
- "message"
4582
- ],
4583
- "properties": {
4584
- "key": {
4585
- "type": "string",
4586
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
4587
- },
4588
- "name": {
4589
- "enum": [
4590
- "default",
4591
- "atomsTooClose",
4592
- "atomsOverlap"
4593
- ],
4594
- "description": "Name of the consistency check that is performed, which is listed in an enum."
4595
- },
4596
- "severity": {
4597
- "enum": [
4598
- "info",
4599
- "warning",
4600
- "error"
4601
- ],
4602
- "description": "Severity level of the problem, which is used in UI to differentiate."
4603
- },
4604
- "message": {
4605
- "type": "string",
4606
- "description": "Message generated by the consistency check describing the problem."
4607
- }
4608
- }
4609
- }
4610
- },
4611
3914
  "schemaVersion": {
4612
3915
  "description": "entity's schema version. Used to distinct between different schemas.",
4613
3916
  "type": "string",
@@ -4790,47 +4093,6 @@
4790
4093
  "systemName": {
4791
4094
  "type": "string"
4792
4095
  },
4793
- "consistencyChecks": {
4794
- "type": "array",
4795
- "items": {
4796
- "$schema": "http://json-schema.org/draft-07/schema#",
4797
- "title": "consistency check",
4798
- "type": "object",
4799
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
4800
- "required": [
4801
- "key",
4802
- "name",
4803
- "severity",
4804
- "message"
4805
- ],
4806
- "properties": {
4807
- "key": {
4808
- "type": "string",
4809
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
4810
- },
4811
- "name": {
4812
- "enum": [
4813
- "default",
4814
- "atomsTooClose",
4815
- "atomsOverlap"
4816
- ],
4817
- "description": "Name of the consistency check that is performed, which is listed in an enum."
4818
- },
4819
- "severity": {
4820
- "enum": [
4821
- "info",
4822
- "warning",
4823
- "error"
4824
- ],
4825
- "description": "Severity level of the problem, which is used in UI to differentiate."
4826
- },
4827
- "message": {
4828
- "type": "string",
4829
- "description": "Message generated by the consistency check describing the problem."
4830
- }
4831
- }
4832
- }
4833
- },
4834
4096
  "schemaVersion": {
4835
4097
  "description": "entity's schema version. Used to distinct between different schemas.",
4836
4098
  "type": "string",
@@ -5018,47 +4280,6 @@
5018
4280
  "systemName": {
5019
4281
  "type": "string"
5020
4282
  },
5021
- "consistencyChecks": {
5022
- "type": "array",
5023
- "items": {
5024
- "$schema": "http://json-schema.org/draft-07/schema#",
5025
- "title": "consistency check",
5026
- "type": "object",
5027
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
5028
- "required": [
5029
- "key",
5030
- "name",
5031
- "severity",
5032
- "message"
5033
- ],
5034
- "properties": {
5035
- "key": {
5036
- "type": "string",
5037
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
5038
- },
5039
- "name": {
5040
- "enum": [
5041
- "default",
5042
- "atomsTooClose",
5043
- "atomsOverlap"
5044
- ],
5045
- "description": "Name of the consistency check that is performed, which is listed in an enum."
5046
- },
5047
- "severity": {
5048
- "enum": [
5049
- "info",
5050
- "warning",
5051
- "error"
5052
- ],
5053
- "description": "Severity level of the problem, which is used in UI to differentiate."
5054
- },
5055
- "message": {
5056
- "type": "string",
5057
- "description": "Message generated by the consistency check describing the problem."
5058
- }
5059
- }
5060
- }
5061
- },
5062
4283
  "schemaVersion": {
5063
4284
  "description": "entity's schema version. Used to distinct between different schemas.",
5064
4285
  "type": "string",
@@ -5328,47 +4549,6 @@
5328
4549
  "systemName": {
5329
4550
  "type": "string"
5330
4551
  },
5331
- "consistencyChecks": {
5332
- "type": "array",
5333
- "items": {
5334
- "$schema": "http://json-schema.org/draft-07/schema#",
5335
- "title": "consistency check",
5336
- "type": "object",
5337
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
5338
- "required": [
5339
- "key",
5340
- "name",
5341
- "severity",
5342
- "message"
5343
- ],
5344
- "properties": {
5345
- "key": {
5346
- "type": "string",
5347
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
5348
- },
5349
- "name": {
5350
- "enum": [
5351
- "default",
5352
- "atomsTooClose",
5353
- "atomsOverlap"
5354
- ],
5355
- "description": "Name of the consistency check that is performed, which is listed in an enum."
5356
- },
5357
- "severity": {
5358
- "enum": [
5359
- "info",
5360
- "warning",
5361
- "error"
5362
- ],
5363
- "description": "Severity level of the problem, which is used in UI to differentiate."
5364
- },
5365
- "message": {
5366
- "type": "string",
5367
- "description": "Message generated by the consistency check describing the problem."
5368
- }
5369
- }
5370
- }
5371
- },
5372
4552
  "schemaVersion": {
5373
4553
  "description": "entity's schema version. Used to distinct between different schemas.",
5374
4554
  "type": "string",
@@ -5611,47 +4791,6 @@
5611
4791
  "systemName": {
5612
4792
  "type": "string"
5613
4793
  },
5614
- "consistencyChecks": {
5615
- "type": "array",
5616
- "items": {
5617
- "$schema": "http://json-schema.org/draft-07/schema#",
5618
- "title": "consistency check",
5619
- "type": "object",
5620
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
5621
- "required": [
5622
- "key",
5623
- "name",
5624
- "severity",
5625
- "message"
5626
- ],
5627
- "properties": {
5628
- "key": {
5629
- "type": "string",
5630
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
5631
- },
5632
- "name": {
5633
- "enum": [
5634
- "default",
5635
- "atomsTooClose",
5636
- "atomsOverlap"
5637
- ],
5638
- "description": "Name of the consistency check that is performed, which is listed in an enum."
5639
- },
5640
- "severity": {
5641
- "enum": [
5642
- "info",
5643
- "warning",
5644
- "error"
5645
- ],
5646
- "description": "Severity level of the problem, which is used in UI to differentiate."
5647
- },
5648
- "message": {
5649
- "type": "string",
5650
- "description": "Message generated by the consistency check describing the problem."
5651
- }
5652
- }
5653
- }
5654
- },
5655
4794
  "schemaVersion": {
5656
4795
  "description": "entity's schema version. Used to distinct between different schemas.",
5657
4796
  "type": "string",
@@ -5924,47 +5063,6 @@
5924
5063
  "systemName": {
5925
5064
  "type": "string"
5926
5065
  },
5927
- "consistencyChecks": {
5928
- "type": "array",
5929
- "items": {
5930
- "$schema": "http://json-schema.org/draft-07/schema#",
5931
- "title": "consistency check",
5932
- "type": "object",
5933
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
5934
- "required": [
5935
- "key",
5936
- "name",
5937
- "severity",
5938
- "message"
5939
- ],
5940
- "properties": {
5941
- "key": {
5942
- "type": "string",
5943
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
5944
- },
5945
- "name": {
5946
- "enum": [
5947
- "default",
5948
- "atomsTooClose",
5949
- "atomsOverlap"
5950
- ],
5951
- "description": "Name of the consistency check that is performed, which is listed in an enum."
5952
- },
5953
- "severity": {
5954
- "enum": [
5955
- "info",
5956
- "warning",
5957
- "error"
5958
- ],
5959
- "description": "Severity level of the problem, which is used in UI to differentiate."
5960
- },
5961
- "message": {
5962
- "type": "string",
5963
- "description": "Message generated by the consistency check describing the problem."
5964
- }
5965
- }
5966
- }
5967
- },
5968
5066
  "schemaVersion": {
5969
5067
  "description": "entity's schema version. Used to distinct between different schemas.",
5970
5068
  "type": "string",
@@ -6190,47 +5288,6 @@
6190
5288
  "systemName": {
6191
5289
  "type": "string"
6192
5290
  },
6193
- "consistencyChecks": {
6194
- "type": "array",
6195
- "items": {
6196
- "$schema": "http://json-schema.org/draft-07/schema#",
6197
- "title": "consistency check",
6198
- "type": "object",
6199
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
6200
- "required": [
6201
- "key",
6202
- "name",
6203
- "severity",
6204
- "message"
6205
- ],
6206
- "properties": {
6207
- "key": {
6208
- "type": "string",
6209
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
6210
- },
6211
- "name": {
6212
- "enum": [
6213
- "default",
6214
- "atomsTooClose",
6215
- "atomsOverlap"
6216
- ],
6217
- "description": "Name of the consistency check that is performed, which is listed in an enum."
6218
- },
6219
- "severity": {
6220
- "enum": [
6221
- "info",
6222
- "warning",
6223
- "error"
6224
- ],
6225
- "description": "Severity level of the problem, which is used in UI to differentiate."
6226
- },
6227
- "message": {
6228
- "type": "string",
6229
- "description": "Message generated by the consistency check describing the problem."
6230
- }
6231
- }
6232
- }
6233
- },
6234
5291
  "schemaVersion": {
6235
5292
  "description": "entity's schema version. Used to distinct between different schemas.",
6236
5293
  "type": "string",
@@ -6437,47 +5494,6 @@
6437
5494
  "systemName": {
6438
5495
  "type": "string"
6439
5496
  },
6440
- "consistencyChecks": {
6441
- "type": "array",
6442
- "items": {
6443
- "$schema": "http://json-schema.org/draft-07/schema#",
6444
- "title": "consistency check",
6445
- "type": "object",
6446
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
6447
- "required": [
6448
- "key",
6449
- "name",
6450
- "severity",
6451
- "message"
6452
- ],
6453
- "properties": {
6454
- "key": {
6455
- "type": "string",
6456
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
6457
- },
6458
- "name": {
6459
- "enum": [
6460
- "default",
6461
- "atomsTooClose",
6462
- "atomsOverlap"
6463
- ],
6464
- "description": "Name of the consistency check that is performed, which is listed in an enum."
6465
- },
6466
- "severity": {
6467
- "enum": [
6468
- "info",
6469
- "warning",
6470
- "error"
6471
- ],
6472
- "description": "Severity level of the problem, which is used in UI to differentiate."
6473
- },
6474
- "message": {
6475
- "type": "string",
6476
- "description": "Message generated by the consistency check describing the problem."
6477
- }
6478
- }
6479
- }
6480
- },
6481
5497
  "schemaVersion": {
6482
5498
  "description": "entity's schema version. Used to distinct between different schemas.",
6483
5499
  "type": "string",
@@ -6705,6 +5721,9 @@
6705
5721
  "$schema": "http://json-schema.org/draft-07/schema#",
6706
5722
  "title": "entity reference schema",
6707
5723
  "type": "object",
5724
+ "required": [
5725
+ "_id"
5726
+ ],
6708
5727
  "properties": {
6709
5728
  "_id": {
6710
5729
  "description": "entity identity",
@@ -6724,6 +5743,9 @@
6724
5743
  "$schema": "http://json-schema.org/draft-07/schema#",
6725
5744
  "title": "entity reference schema",
6726
5745
  "type": "object",
5746
+ "required": [
5747
+ "_id"
5748
+ ],
6727
5749
  "properties": {
6728
5750
  "_id": {
6729
5751
  "description": "entity identity",
@@ -6743,6 +5765,9 @@
6743
5765
  "$schema": "http://json-schema.org/draft-07/schema#",
6744
5766
  "title": "entity reference schema",
6745
5767
  "type": "object",
5768
+ "required": [
5769
+ "_id"
5770
+ ],
6746
5771
  "properties": {
6747
5772
  "_id": {
6748
5773
  "description": "entity identity",
@@ -6804,47 +5829,6 @@
6804
5829
  "systemName": {
6805
5830
  "type": "string"
6806
5831
  },
6807
- "consistencyChecks": {
6808
- "type": "array",
6809
- "items": {
6810
- "$schema": "http://json-schema.org/draft-07/schema#",
6811
- "title": "consistency check",
6812
- "type": "object",
6813
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
6814
- "required": [
6815
- "key",
6816
- "name",
6817
- "severity",
6818
- "message"
6819
- ],
6820
- "properties": {
6821
- "key": {
6822
- "type": "string",
6823
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
6824
- },
6825
- "name": {
6826
- "enum": [
6827
- "default",
6828
- "atomsTooClose",
6829
- "atomsOverlap"
6830
- ],
6831
- "description": "Name of the consistency check that is performed, which is listed in an enum."
6832
- },
6833
- "severity": {
6834
- "enum": [
6835
- "info",
6836
- "warning",
6837
- "error"
6838
- ],
6839
- "description": "Severity level of the problem, which is used in UI to differentiate."
6840
- },
6841
- "message": {
6842
- "type": "string",
6843
- "description": "Message generated by the consistency check describing the problem."
6844
- }
6845
- }
6846
- }
6847
- },
6848
5832
  "schemaVersion": {
6849
5833
  "description": "entity's schema version. Used to distinct between different schemas.",
6850
5834
  "type": "string",