@mat3ra/esse 2023.12.25-2

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Files changed (609) hide show
  1. package/.babelrc +10 -0
  2. package/.eslintrc.json +3 -0
  3. package/.pre-commit-config.yaml +20 -0
  4. package/.prettierrc +6 -0
  5. package/LICENSE.md +15 -0
  6. package/README.md +157 -0
  7. package/build_schemas.js +42 -0
  8. package/build_schemas.py +61 -0
  9. package/docs/README.md +3 -0
  10. package/example/3pse/file/applications/espresso/7.2/pw.x.json +94 -0
  11. package/example/core/abstract/2d_data.json +19 -0
  12. package/example/core/abstract/2d_plot.json +26 -0
  13. package/example/core/abstract/3d_grid.json +12 -0
  14. package/example/core/abstract/3d_tensor.json +17 -0
  15. package/example/core/abstract/3d_vector_basis.json +17 -0
  16. package/example/core/abstract/point.json +5 -0
  17. package/example/core/abstract/vector.json +5 -0
  18. package/example/core/primitive/1d_data_series.json +12 -0
  19. package/example/core/primitive/3d_lattice.json +8 -0
  20. package/example/core/primitive/array_of_3_booleans.json +5 -0
  21. package/example/core/primitive/array_of_3_numbers.json +5 -0
  22. package/example/core/primitive/array_of_ids.json +8 -0
  23. package/example/core/primitive/axis.json +4 -0
  24. package/example/core/primitive/scalar.json +3 -0
  25. package/example/core/primitive/string.json +3 -0
  26. package/example/core/reference/experiment/condition.json +12 -0
  27. package/example/core/reference/experiment/location.json +4 -0
  28. package/example/core/reference/experiment.json +22 -0
  29. package/example/core/reference/literature/name.json +5 -0
  30. package/example/core/reference/literature/pages.json +4 -0
  31. package/example/core/reference/literature.json +8 -0
  32. package/example/core/reference/modeling/exabyte.json +7 -0
  33. package/example/core/reference/modeling.json +3 -0
  34. package/example/core/reference.json +3 -0
  35. package/example/core/reusable/atomic_vectors.json +18 -0
  36. package/example/core/reusable/band_gap.json +16 -0
  37. package/example/core/reusable/energy.json +5 -0
  38. package/example/core/reusable/file_metadata.json +5 -0
  39. package/example/core/reusable/object_storage_container_data.json +8 -0
  40. package/example/element.json +14 -0
  41. package/example/job/compute.json +26 -0
  42. package/example/job.json +26 -0
  43. package/example/material.json +94 -0
  44. package/example/method/categorized_method.json +47 -0
  45. package/example/method/method_parameters.json +3 -0
  46. package/example/method.json +7 -0
  47. package/example/methods_directory/legacy/localorbital.json +4 -0
  48. package/example/methods_directory/legacy/pseudopotential.json +4 -0
  49. package/example/methods_directory/legacy/regression.json +61 -0
  50. package/example/methods_directory/legacy/unknown.json +4 -0
  51. package/example/methods_directory/mathematical/cg.json +10 -0
  52. package/example/methods_directory/mathematical/regression.json +65 -0
  53. package/example/methods_directory/physical/ao/dunning.json +13 -0
  54. package/example/methods_directory/physical/psp/file.json +49 -0
  55. package/example/methods_directory/physical/psp.json +16 -0
  56. package/example/methods_directory/physical/pw.json +9 -0
  57. package/example/methods_directory/physical/smearing.json +10 -0
  58. package/example/methods_directory/physical/tetrahedron.json +10 -0
  59. package/example/model/categorized_model.json +33 -0
  60. package/example/model/model_parameters.json +7 -0
  61. package/example/model.json +7 -0
  62. package/example/models_category/pb/qm/abin/gw.json +7 -0
  63. package/example/models_category/pb/qm/dft/ksdft.json +6 -0
  64. package/example/models_category/pb/qm/semp.json +5 -0
  65. package/example/models_directory/gga.json +15 -0
  66. package/example/models_directory/gw.json +15 -0
  67. package/example/models_directory/hybrid.json +15 -0
  68. package/example/models_directory/lda.json +15 -0
  69. package/example/models_directory/legacy/dft.json +8 -0
  70. package/example/models_directory/legacy/ml.json +7 -0
  71. package/example/models_directory/legacy/unknown.json +7 -0
  72. package/example/models_directory/re.json +9 -0
  73. package/example/project.json +21 -0
  74. package/example/properties_directory/electronic_configuration.json +4 -0
  75. package/example/properties_directory/elemental/atomic_radius.json +4 -0
  76. package/example/properties_directory/elemental/electronegativity.json +4 -0
  77. package/example/properties_directory/elemental/ionization_potential.json +4 -0
  78. package/example/properties_directory/non-scalar/band_gaps.json +25 -0
  79. package/example/properties_directory/non-scalar/band_structure.json +47 -0
  80. package/example/properties_directory/non-scalar/charge_density_profile.json +22 -0
  81. package/example/properties_directory/non-scalar/density_of_states.json +55 -0
  82. package/example/properties_directory/non-scalar/dielectric_tensor.json +133 -0
  83. package/example/properties_directory/non-scalar/file_content.json +8 -0
  84. package/example/properties_directory/non-scalar/hubbard_u.json +24 -0
  85. package/example/properties_directory/non-scalar/hubbard_v.json +22 -0
  86. package/example/properties_directory/non-scalar/hubbard_v_nn.json +24 -0
  87. package/example/properties_directory/non-scalar/phonon_dispersions.json +41 -0
  88. package/example/properties_directory/non-scalar/phonon_dos.json +37 -0
  89. package/example/properties_directory/non-scalar/potential_profile.json +32 -0
  90. package/example/properties_directory/non-scalar/reaction_energy_profile.json +30 -0
  91. package/example/properties_directory/non-scalar/stress_tensor.json +21 -0
  92. package/example/properties_directory/non-scalar/total_energy_contributions.json +44 -0
  93. package/example/properties_directory/non-scalar/vibrational_spectrum.json +25 -0
  94. package/example/properties_directory/scalar/electron_affinity.json +5 -0
  95. package/example/properties_directory/scalar/fermi_energy.json +5 -0
  96. package/example/properties_directory/scalar/formation_energy.json +5 -0
  97. package/example/properties_directory/scalar/ionization_potential.json +5 -0
  98. package/example/properties_directory/scalar/pressure.json +5 -0
  99. package/example/properties_directory/scalar/reaction_energy_barrier.json +5 -0
  100. package/example/properties_directory/scalar/surface_energy.json +5 -0
  101. package/example/properties_directory/scalar/total_energy.json +5 -0
  102. package/example/properties_directory/scalar/total_force.json +5 -0
  103. package/example/properties_directory/scalar/valence_band_offset.json +5 -0
  104. package/example/properties_directory/scalar/zero_point_energy.json +5 -0
  105. package/example/properties_directory/structural/atomic_forces.json +22 -0
  106. package/example/properties_directory/structural/basis/atomic_constraints.json +21 -0
  107. package/example/properties_directory/structural/basis/atomic_coordinate.json +8 -0
  108. package/example/properties_directory/structural/basis/atomic_coordinates.json +21 -0
  109. package/example/properties_directory/structural/basis/atomic_element.json +4 -0
  110. package/example/properties_directory/structural/basis/bonds.json +24 -0
  111. package/example/properties_directory/structural/basis.json +19 -0
  112. package/example/properties_directory/structural/density.json +5 -0
  113. package/example/properties_directory/structural/elemental_ratio.json +5 -0
  114. package/example/properties_directory/structural/inchi.json +4 -0
  115. package/example/properties_directory/structural/inchi_key.json +4 -0
  116. package/example/properties_directory/structural/lattice/lattice_bravais.json +13 -0
  117. package/example/properties_directory/structural/lattice/lattice_vectors.json +19 -0
  118. package/example/properties_directory/structural/lattice.json +7 -0
  119. package/example/properties_directory/structural/magnetic_moments.json +22 -0
  120. package/example/properties_directory/structural/molecular_pattern.json +71 -0
  121. package/example/properties_directory/structural/p-norm.json +5 -0
  122. package/example/properties_directory/structural/symmetry.json +9 -0
  123. package/example/properties_directory/structural/volume.json +5 -0
  124. package/example/properties_directory/workflow/convergence/electronic.json +15 -0
  125. package/example/properties_directory/workflow/convergence/ionic.json +20 -0
  126. package/example/properties_directory/workflow/convergence/kpoint.json +22 -0
  127. package/example/property/base.json +21 -0
  128. package/example/software/application.json +7 -0
  129. package/example/software/executable.json +20 -0
  130. package/example/software/flavor.json +9 -0
  131. package/example/software/template.json +14 -0
  132. package/example/software_directory/ml/exabyteml.json +6 -0
  133. package/example/software_directory/ml/unit/execution/evaluate/cross-validate.json +17 -0
  134. package/example/software_directory/ml/unit/execution/initialize.json +20 -0
  135. package/example/software_directory/ml/unit/execution/score.json +15 -0
  136. package/example/software_directory/ml/unit/execution/train.json +26 -0
  137. package/example/software_directory/ml/unit/processing/data_transformation/manipulation.json +14 -0
  138. package/example/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.json +26 -0
  139. package/example/software_directory/ml/unit/processing/feature_selection/filter_based.json +13 -0
  140. package/example/software_directory/modeling/espresso/arguments.json +5 -0
  141. package/example/software_directory/modeling/espresso.json +6 -0
  142. package/example/software_directory/modeling/nwchem.json +6 -0
  143. package/example/software_directory/modeling/unit/execution.json +16 -0
  144. package/example/software_directory/modeling/vasp.json +6 -0
  145. package/example/software_directory/scripting/jupyter-lab.json +8 -0
  146. package/example/software_directory/scripting/python.json +8 -0
  147. package/example/software_directory/scripting/shell.json +8 -0
  148. package/example/software_directory/scripting/unit/execution.json +17 -0
  149. package/example/system/_material.json +5 -0
  150. package/example/system/_parent_job.json +5 -0
  151. package/example/system/_project.json +5 -0
  152. package/example/system/consistency_check.json +6 -0
  153. package/example/system/creator.json +5 -0
  154. package/example/system/entity_reference.json +5 -0
  155. package/example/system/file_source.json +6 -0
  156. package/example/system/message.json +14 -0
  157. package/example/system/owner.json +5 -0
  158. package/example/workflow/subworkflow.json +18 -0
  159. package/example/workflow/unit/assignment.json +19 -0
  160. package/example/workflow/unit/condition.json +22 -0
  161. package/example/workflow/unit/execution.json +39 -0
  162. package/example/workflow/unit/input/_inputItemScope.json +4 -0
  163. package/example/workflow/unit/io/api.json +31 -0
  164. package/example/workflow/unit/io/db.json +15 -0
  165. package/example/workflow/unit/io/object_storage.json +7 -0
  166. package/example/workflow/unit/io.json +41 -0
  167. package/example/workflow/unit/map.json +16 -0
  168. package/example/workflow/unit/processing.json +13 -0
  169. package/example/workflow/unit/reduce.json +16 -0
  170. package/example/workflow/unit/runtime/runtime_items.json +14 -0
  171. package/example/workflow/unit.json +8 -0
  172. package/example/workflow.json +34 -0
  173. package/lib/js/esse/index.js +83 -0
  174. package/lib/js/esse/schemaUtils.js +78 -0
  175. package/lib/js/esse/settings.js +18 -0
  176. package/lib/js/esse/utils.js +74 -0
  177. package/lib/js/json_include/index.js +110 -0
  178. package/lib/js/json_include/settings.js +13 -0
  179. package/lib/js/json_include/utils.js +22 -0
  180. package/lib/js/scripts/createEnumsFromYaml.js +74 -0
  181. package/lib/js/scripts/setSchemaIds.js +156 -0
  182. package/npmignore +6 -0
  183. package/package.json +75 -0
  184. package/schema/3pse/file/applications/espresso/7.2/pw.x/atomic_positions.json +66 -0
  185. package/schema/3pse/file/applications/espresso/7.2/pw.x/atomic_species.json +30 -0
  186. package/schema/3pse/file/applications/espresso/7.2/pw.x/cell.json +89 -0
  187. package/schema/3pse/file/applications/espresso/7.2/pw.x/cell_parameters.json +36 -0
  188. package/schema/3pse/file/applications/espresso/7.2/pw.x/control.json +181 -0
  189. package/schema/3pse/file/applications/espresso/7.2/pw.x/electrons.json +157 -0
  190. package/schema/3pse/file/applications/espresso/7.2/pw.x/hubbard.json +219 -0
  191. package/schema/3pse/file/applications/espresso/7.2/pw.x/ions.json +216 -0
  192. package/schema/3pse/file/applications/espresso/7.2/pw.x/k_points.json +87 -0
  193. package/schema/3pse/file/applications/espresso/7.2/pw.x/system.json +649 -0
  194. package/schema/3pse/file/applications/espresso/7.2/pw.x.json +52 -0
  195. package/schema/core/abstract/2d_data.json +19 -0
  196. package/schema/core/abstract/2d_plot.json +29 -0
  197. package/schema/core/abstract/3d_grid.json +17 -0
  198. package/schema/core/abstract/3d_tensor.json +11 -0
  199. package/schema/core/abstract/3d_vector_basis.json +25 -0
  200. package/schema/core/abstract/point.json +10 -0
  201. package/schema/core/abstract/vector.json +13 -0
  202. package/schema/core/primitive/1d_data_series.json +16 -0
  203. package/schema/core/primitive/3d_lattice.json +40 -0
  204. package/schema/core/primitive/array_of_3_booleans.json +11 -0
  205. package/schema/core/primitive/array_of_3_numbers.json +11 -0
  206. package/schema/core/primitive/array_of_ids.json +17 -0
  207. package/schema/core/primitive/array_of_strings.json +11 -0
  208. package/schema/core/primitive/axis.json +18 -0
  209. package/schema/core/primitive/group_info.json +16 -0
  210. package/schema/core/primitive/integer_one_or_zero.json +8 -0
  211. package/schema/core/primitive/linked_list/base_node.json +34 -0
  212. package/schema/core/primitive/linked_list/named_node.json +14 -0
  213. package/schema/core/primitive/linked_list/named_node_in_group.json +14 -0
  214. package/schema/core/primitive/linked_list/node_with_type.json +16 -0
  215. package/schema/core/primitive/linked_list.json +24 -0
  216. package/schema/core/primitive/scalar.json +14 -0
  217. package/schema/core/primitive/slugified_entry.json +21 -0
  218. package/schema/core/primitive/slugified_entry_or_slug.json +14 -0
  219. package/schema/core/primitive/string.json +14 -0
  220. package/schema/core/reference/exabyte.json +19 -0
  221. package/schema/core/reference/experiment/condition.json +29 -0
  222. package/schema/core/reference/experiment/location.json +19 -0
  223. package/schema/core/reference/experiment.json +58 -0
  224. package/schema/core/reference/literature/name.json +24 -0
  225. package/schema/core/reference/literature/pages.json +17 -0
  226. package/schema/core/reference/literature.json +82 -0
  227. package/schema/core/reference/modeling/exabyte.json +30 -0
  228. package/schema/core/reference/modeling.json +10 -0
  229. package/schema/core/reference.json +16 -0
  230. package/schema/core/reusable/atomic_data/per_orbital.json +22 -0
  231. package/schema/core/reusable/atomic_data/per_orbital_pair.json +39 -0
  232. package/schema/core/reusable/atomic_data/value_number.json +13 -0
  233. package/schema/core/reusable/atomic_data/value_string.json +13 -0
  234. package/schema/core/reusable/atomic_data_per_orbital_numeric.json +15 -0
  235. package/schema/core/reusable/atomic_data_per_orbital_pair_numeric.json +15 -0
  236. package/schema/core/reusable/atomic_orbital.json +32 -0
  237. package/schema/core/reusable/atomic_scalars.json +17 -0
  238. package/schema/core/reusable/atomic_strings.json +17 -0
  239. package/schema/core/reusable/atomic_vectors.json +17 -0
  240. package/schema/core/reusable/band_gap.json +44 -0
  241. package/schema/core/reusable/categories.json +29 -0
  242. package/schema/core/reusable/category_path.json +7 -0
  243. package/schema/core/reusable/dielectric_tensor_component.json +28 -0
  244. package/schema/core/reusable/energy.json +29 -0
  245. package/schema/core/reusable/file_metadata.json +20 -0
  246. package/schema/core/reusable/frequency_function_matrix.json +23 -0
  247. package/schema/core/reusable/object_storage_container_data.json +37 -0
  248. package/schema/definitions/units.json +103 -0
  249. package/schema/element.json +28 -0
  250. package/schema/in_memory_entity/base.json +30 -0
  251. package/schema/in_memory_entity/defaultable.json +13 -0
  252. package/schema/in_memory_entity/named.json +13 -0
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  254. package/schema/in_memory_entity/named_defaultable_has_metadata.json +19 -0
  255. package/schema/in_memory_entity/named_defaultable_runtime_items.json +19 -0
  256. package/schema/job/base.json +80 -0
  257. package/schema/job/compute.json +145 -0
  258. package/schema/job.json +19 -0
  259. package/schema/material/conventional.json +10 -0
  260. package/schema/material.json +57 -0
  261. package/schema/method/categorized_method.json +24 -0
  262. package/schema/method/method_parameters.json +20 -0
  263. package/schema/method/unit_method.json +27 -0
  264. package/schema/method.json +27 -0
  265. package/schema/methods_category/mathematical/diff/enum_options.json +8 -0
  266. package/schema/methods_category/mathematical/diff/enum_options.yml +3 -0
  267. package/schema/methods_category/mathematical/diff/fd.json +15 -0
  268. package/schema/methods_category/mathematical/diff.json +15 -0
  269. package/schema/methods_category/mathematical/discr/enum_options.json +8 -0
  270. package/schema/methods_category/mathematical/discr/enum_options.yml +3 -0
  271. package/schema/methods_category/mathematical/discr/mesh/enum_options.json +18 -0
  272. package/schema/methods_category/mathematical/discr/mesh/enum_options.yml +7 -0
  273. package/schema/methods_category/mathematical/discr/mesh/hybrid.json +15 -0
  274. package/schema/methods_category/mathematical/discr/mesh/nstruct.json +15 -0
  275. package/schema/methods_category/mathematical/discr/mesh/struct/cartesian.json +15 -0
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@@ -0,0 +1,219 @@
1
+ {
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+ "$id": "3pse/file/applications/espresso/7.2/pw.x/hubbard",
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+ "$schema": "http://json-schema.org/draft-04/schema#",
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+ "card_option": {
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+ "type": "string",
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+ "atomic",
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+ "ortho-atomic",
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+ "norm-atomic",
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+ "wf",
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+ "pseudo"
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+ ]
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+ },
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+ "values": {
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+ "oneOf": [
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+ {
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+ "description": "IF DFT+U",
22
+ "type": "array",
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+ "items": {
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+ "oneOf": [
25
+ {
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+ "type": "object",
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+ "description": "https://www.quantum-espresso.org/Doc/INPUT_PW.html#idm1764",
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+ "properties": {
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+ "U": {
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+ "type": "string",
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+ "enum": [
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+ "U"
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+ "description": "string constant \"U\"; indicates the specs for the U parameter will be given"
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+ "type": "string",
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+ "description": "label of the atom (as defined in ATOMIC_SPECIES)"
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+ },
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+ "manifold": {
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+ "type": "string",
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+ "description": "specs of the manifold (e.g., 3d, 2p...)"
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+ },
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+ "u_val": {
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+ "type": "number",
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+ "description": "value of the U parameter (in eV)"
48
+ }
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+ }
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+ },
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+ {
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+ "type": "object",
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+ "description": "https://www.quantum-espresso.org/Doc/INPUT_PW.html#idm1784",
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+ "additionalProperties": false,
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+ "J0": {
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+ "type": "string",
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+ "J0"
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+ "label": {
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+ "type": "string",
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+ },
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+ "manifold": {
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+ "type": "string",
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+ "description": "specs of the manifold (e.g., 3d, 2p...)"
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+ "type": "number",
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+ "description": "value of the J0 parameter (in eV)"
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+ }
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+ }
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+ }
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+ }
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+ },
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+ {
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+ "description": "IF DFT+U+J",
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+ "type": "object",
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+ "description": "https://www.quantum-espresso.org/Doc/INPUT_PW.html#idm1817",
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+ "additionalProperties": false,
87
+ "properties": {
88
+ "paramType": {
89
+ "type": "string",
90
+ "enum": [
91
+ "U",
92
+ "J",
93
+ "B",
94
+ "E2",
95
+ "E3"
96
+ ],
97
+ "description": "character describing the type of Hubbard parameter allowed values: U, J and either B (for d-orbitals) or E2 and E3 (for f-orbitals)"
98
+ },
99
+ "label": {
100
+ "type": "string",
101
+ "description": "label of the atom (as defined in ATOMIC_SPECIES)"
102
+ },
103
+ "manifold": {
104
+ "type": "string",
105
+ "description": "specs of the manifold (e.g., 3d, 2p...)"
106
+ },
107
+ "paramValue": {
108
+ "type": "number",
109
+ "description": "value of the J0 parameter (in eV)"
110
+ }
111
+ }
112
+ }
113
+ },
114
+ {
115
+ "description": "IF DFT+U+V",
116
+ "type": "array",
117
+ "items": {
118
+ "oneOf": [
119
+ {
120
+ "type": "object",
121
+ "description": "https://www.quantum-espresso.org/Doc/INPUT_PW.html#idm1847",
122
+ "additionalProperties": false,
123
+ "properties": {
124
+ "U": {
125
+ "type": "string",
126
+ "enum": [
127
+ "U"
128
+ ],
129
+ "description": "string constant \"U\"; indicates the specs for the U parameter will be given"
130
+ },
131
+ "label": {
132
+ "type": "string",
133
+ "description": "label of the atom (as defined in ATOMIC_SPECIES)"
134
+ },
135
+ "manifold": {
136
+ "type": "string",
137
+ "description": "specs of the manifold (e.g., 3d, 2p...)"
138
+ },
139
+ "u_val": {
140
+ "type": "number",
141
+ "description": "value of the U parameter (in eV)"
142
+ }
143
+ }
144
+ },
145
+ {
146
+ "type": "object",
147
+ "description": "https://www.quantum-espresso.org/Doc/INPUT_PW.html#idm1865",
148
+ "additionalProperties": false,
149
+ "properties": {
150
+ "J0": {
151
+ "type": "string",
152
+ "enum": [
153
+ "J0"
154
+ ],
155
+ "description": "string constant \"J0\"; indicates the specs for the J0 parameter will be given"
156
+ },
157
+ "label": {
158
+ "type": "string",
159
+ "description": "label of the atom (as defined in ATOMIC_SPECIES)"
160
+ },
161
+ "manifold": {
162
+ "type": "string",
163
+ "description": "specs of the manifold (e.g., 3d, 2p...)"
164
+ },
165
+ "j0_val": {
166
+ "type": "number",
167
+ "description": "value of the J0 parameter (in eV)"
168
+ }
169
+ }
170
+ },
171
+ {
172
+ "type": "object",
173
+ "description": "https://www.quantum-espresso.org/Doc/INPUT_PW.html#idm1884",
174
+ "additionalProperties": false,
175
+ "properties": {
176
+ "V": {
177
+ "type": "string",
178
+ "enum": [
179
+ "V"
180
+ ],
181
+ "description": "string constant \"V\"; indicates the specs for the V parameter will be given"
182
+ },
183
+ "label(I)": {
184
+ "type": "string",
185
+ "description": "label of the atom I (as defined in ATOMIC_SPECIES)"
186
+ },
187
+ "manifold(I)": {
188
+ "type": "string",
189
+ "description": "specs of the manifold for atom I (e.g., 3d, 2p...)"
190
+ },
191
+ "label(J)": {
192
+ "type": "string",
193
+ "description": "label of the atom J (as defined in ATOMIC_SPECIES)"
194
+ },
195
+ "manifold(J)": {
196
+ "type": "string",
197
+ "description": "specs of the manifold for atom J (e.g., 3d, 2p...)"
198
+ },
199
+ "I": {
200
+ "type": "integer",
201
+ "description": "index of the atom I"
202
+ },
203
+ "J": {
204
+ "type": "integer",
205
+ "description": "index of the atom J"
206
+ },
207
+ "v_val(I,J)": {
208
+ "type": "number",
209
+ "description": "value of the V parameter for the atom pair I,J (in eV)"
210
+ }
211
+ }
212
+ }
213
+ ]
214
+ }
215
+ }
216
+ ]
217
+ }
218
+ }
219
+ }
@@ -0,0 +1,216 @@
1
+ {
2
+ "$id": "3pse/file/applications/espresso/7.2/pw.x/ions",
3
+ "$schema": "http://json-schema.org/draft-04/schema#",
4
+ "title": "ions schema",
5
+ "type": "object",
6
+ "additionalProperties": false,
7
+ "oneOf": [
8
+ {
9
+ "type": "object",
10
+ "additionalProperties": false,
11
+ "properties": {
12
+ "ion_dynamics": {
13
+ "type": "string",
14
+ "enum": [
15
+ "bfgs",
16
+ "damp",
17
+ "fire"
18
+ ],
19
+ "default": "bfgs",
20
+ "description": "CASE: calculation == 'relax'"
21
+ }
22
+ }
23
+ },
24
+ {
25
+ "type": "object",
26
+ "additionalProperties": false,
27
+ "properties": {
28
+ "ion_dynamics": {
29
+ "type": "string",
30
+ "enum": [
31
+ "verlet",
32
+ "langevin",
33
+ "langevin-smc"
34
+ ],
35
+ "default": "verlet",
36
+ "description": "CASE: calculation == 'md'"
37
+ }
38
+ }
39
+ },
40
+ {
41
+ "type": "object",
42
+ "additionalProperties": false,
43
+ "properties": {
44
+ "ion_dynamics": {
45
+ "type": "string",
46
+ "enum": [
47
+ "bfgs",
48
+ "damp"
49
+ ],
50
+ "default": "bfgs",
51
+ "description": "CASE: calculation == 'vc-relax'"
52
+ }
53
+ }
54
+ },
55
+ {
56
+ "type": "object",
57
+ "additionalProperties": false,
58
+ "properties": {
59
+ "ion_dynamics": {
60
+ "type": "string",
61
+ "enum": [
62
+ "beeman"
63
+ ],
64
+ "default": "beeman",
65
+ "description": "CASE: calculation == 'vc-md'"
66
+ }
67
+ }
68
+ }
69
+ ],
70
+ "properties": {
71
+ "ion_positions": {
72
+ "type": "string",
73
+ "enum": [
74
+ "default",
75
+ "from_input"
76
+ ],
77
+ "default": "default"
78
+ },
79
+ "ion_velocities": {
80
+ "type": "string",
81
+ "enum": [
82
+ "default",
83
+ "from_input"
84
+ ],
85
+ "default": "default"
86
+ },
87
+ "pot_extrapolation": {
88
+ "type": "string",
89
+ "enum": [
90
+ "none",
91
+ "atomic",
92
+ "first_order",
93
+ "second_order"
94
+ ],
95
+ "default": "atomic",
96
+ "description": "Used to extrapolate the potential from preceding ionic steps."
97
+ },
98
+ "wfc_extrapolation": {
99
+ "type": "string",
100
+ "enum": [
101
+ "none",
102
+ "first_order",
103
+ "second_order"
104
+ ],
105
+ "default": "none",
106
+ "description": "Used to extrapolate the wavefunctions from preceding ionic steps."
107
+ },
108
+ "remove_rigid_rot": {
109
+ "type": "boolean",
110
+ "default": false,
111
+ "description": "This keyword is useful when simulating the dynamics and/or the thermodynamics of an isolated system. If set to true the total torque of the internal forces is set to zero by adding new forces that compensate the spurious interaction with the periodic images. This allows for the use of smaller supercells."
112
+ },
113
+ "ion_temperature": {
114
+ "type": "string",
115
+ "enum": [
116
+ "rescaling",
117
+ "rescale-v",
118
+ "rescale-T",
119
+ "reduce-T",
120
+ "berendsen",
121
+ "andersen",
122
+ "svr",
123
+ "initial",
124
+ "not_controlled"
125
+ ],
126
+ "default": "not_controlled"
127
+ },
128
+ "tempw": {
129
+ "type": "number",
130
+ "description": "Starting temperature (Kelvin) in MD runs target temperature for most thermostats.",
131
+ "default": 300
132
+ },
133
+ "tolp": {
134
+ "type": "number",
135
+ "description": "Tolerance for velocity rescaling. Velocities are rescaled if the run-averaged and target temperature differ more than tolp.",
136
+ "default": 100
137
+ },
138
+ "delta_t": {
139
+ "type": "number",
140
+ "default": 1
141
+ },
142
+ "nraise": {
143
+ "type": "integer",
144
+ "default": 1
145
+ },
146
+ "refold_pos": {
147
+ "type": "boolean",
148
+ "default": false,
149
+ "description": "This keyword applies only in the case of molecular dynamics or damped dynamics. If true the ions are refolded at each step into the supercell."
150
+ },
151
+ "upscale": {
152
+ "type": "number",
153
+ "description": "Max reduction factor for conv_thr during structural optimization conv_thr is automatically reduced when the relaxation approaches convergence so that forces are still accurate, but conv_thr will not be reduced to less that conv_thr / upscale.",
154
+ "default": 100
155
+ },
156
+ "bfgs_ndim": {
157
+ "type": "integer",
158
+ "default": 1,
159
+ "description": "Number of old forces and displacements vectors used in the PULAY mixing of the residual vectors obtained on the basis of the inverse hessian matrix given by the BFGS algorithm."
160
+ },
161
+ "trust_radius_max": {
162
+ "type": "number",
163
+ "description": "Maximum ionic displacement in the structural relaxation. (bfgs only)",
164
+ "default": 0.8
165
+ },
166
+ "trust_radius_min": {
167
+ "type": "number",
168
+ "description": "Minimum ionic displacement in the structural relaxation BFGS is reset when trust_radius < trust_radius_min. (bfgs only)",
169
+ "default": 0.001
170
+ },
171
+ "trust_radius_ini": {
172
+ "type": "number",
173
+ "description": "Initial ionic displacement in the structural relaxation. (bfgs only)",
174
+ "default": 0.5
175
+ },
176
+ "w_1": {
177
+ "type": "number",
178
+ "default": 0.01
179
+ },
180
+ "w_2": {
181
+ "type": "number",
182
+ "description": "Parameters used in line search based on the Wolfe conditions. (bfgs only)",
183
+ "default": 0.5
184
+ },
185
+ "fire_alpha_init": {
186
+ "type": "number",
187
+ "description": "Initial value of the alpha mixing factor in the FIRE minimization scheme; recommended values are between 0.1 and 0.3",
188
+ "default": 0.2
189
+ },
190
+ "fire_falpha": {
191
+ "type": "number",
192
+ "description": "Scaling of the alpha mixing parameter for steps with P > 0;",
193
+ "default": 0.99
194
+ },
195
+ "fire_nmin": {
196
+ "type": "integer",
197
+ "default": 5,
198
+ "description": "Minimum number of steps with P > 0 before increase of dt"
199
+ },
200
+ "fire_f_inc": {
201
+ "type": "number",
202
+ "description": "Factor for increasing dt",
203
+ "default": 1.1
204
+ },
205
+ "fire_f_dec": {
206
+ "type": "number",
207
+ "description": "Factor for decreasing dt",
208
+ "default": 0.5
209
+ },
210
+ "fire_dtmax": {
211
+ "type": "number",
212
+ "description": "Determines the maximum value of dt in the FIRE minimization; dtmax = fire_dtmax*dt",
213
+ "default": 10
214
+ }
215
+ }
216
+ }
@@ -0,0 +1,87 @@
1
+ {
2
+ "$id": "3pse/file/applications/espresso/7.2/pw.x/k-points",
3
+ "$schema": "http://json-schema.org/draft-04/schema#",
4
+ "title": "k points schema",
5
+ "type": "object",
6
+ "additionalProperties": false,
7
+ "properties": {
8
+ "card_option": {
9
+ "type": "string",
10
+ "enum": [
11
+ "tpiba",
12
+ "automatic",
13
+ "crystal",
14
+ "gamma",
15
+ "tpiba_b",
16
+ "crystal_b",
17
+ "tpiba_c",
18
+ "crystal_c"
19
+ ]
20
+ },
21
+ "values": {
22
+ "oneOf": [
23
+ {
24
+ "type": "array",
25
+ "description": "K_POINTS tpiba | crystal | tpiba_b | crystal_b | tpiba_c | crystal_c",
26
+ "items": {
27
+ "type": "object",
28
+ "additionalProperties": false,
29
+ "properties": {
30
+ "nks": {
31
+ "type": "integer",
32
+ "description": "Number of supplied special k-points."
33
+ },
34
+ "xk_x": {
35
+ "type": "number"
36
+ },
37
+ "xk_y": {
38
+ "type": "number"
39
+ },
40
+ "xk_z": {
41
+ "type": "number"
42
+ },
43
+ "wk": {
44
+ "type": "number"
45
+ }
46
+ }
47
+ }
48
+ },
49
+ {
50
+ "type": "object",
51
+ "description": "K_POINTS automatic",
52
+ "additionalProperties": false,
53
+ "properties": {
54
+ "nk1": {
55
+ "type": "integer",
56
+ "description": "Number of supplied special k-points."
57
+ },
58
+ "nk2": {
59
+ "type": "integer",
60
+ "description": "Number of supplied special k-points."
61
+ },
62
+ "nk3": {
63
+ "type": "integer",
64
+ "description": "Number of supplied special k-points."
65
+ },
66
+ "sk1": {
67
+ "type": "integer",
68
+ "description": "Number of supplied special k-points."
69
+ },
70
+ "sk2": {
71
+ "type": "integer",
72
+ "description": "Number of supplied special k-points."
73
+ },
74
+ "sk3": {
75
+ "type": "integer",
76
+ "description": "Number of supplied special k-points."
77
+ }
78
+ }
79
+ },
80
+ {
81
+ "type": "null",
82
+ "description": "K_POINTS gamma"
83
+ }
84
+ ]
85
+ }
86
+ }
87
+ }