@mat3ra/esse 2023.12.25-2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.babelrc +10 -0
- package/.eslintrc.json +3 -0
- package/.pre-commit-config.yaml +20 -0
- package/.prettierrc +6 -0
- package/LICENSE.md +15 -0
- package/README.md +157 -0
- package/build_schemas.js +42 -0
- package/build_schemas.py +61 -0
- package/docs/README.md +3 -0
- package/example/3pse/file/applications/espresso/7.2/pw.x.json +94 -0
- package/example/core/abstract/2d_data.json +19 -0
- package/example/core/abstract/2d_plot.json +26 -0
- package/example/core/abstract/3d_grid.json +12 -0
- package/example/core/abstract/3d_tensor.json +17 -0
- package/example/core/abstract/3d_vector_basis.json +17 -0
- package/example/core/abstract/point.json +5 -0
- package/example/core/abstract/vector.json +5 -0
- package/example/core/primitive/1d_data_series.json +12 -0
- package/example/core/primitive/3d_lattice.json +8 -0
- package/example/core/primitive/array_of_3_booleans.json +5 -0
- package/example/core/primitive/array_of_3_numbers.json +5 -0
- package/example/core/primitive/array_of_ids.json +8 -0
- package/example/core/primitive/axis.json +4 -0
- package/example/core/primitive/scalar.json +3 -0
- package/example/core/primitive/string.json +3 -0
- package/example/core/reference/experiment/condition.json +12 -0
- package/example/core/reference/experiment/location.json +4 -0
- package/example/core/reference/experiment.json +22 -0
- package/example/core/reference/literature/name.json +5 -0
- package/example/core/reference/literature/pages.json +4 -0
- package/example/core/reference/literature.json +8 -0
- package/example/core/reference/modeling/exabyte.json +7 -0
- package/example/core/reference/modeling.json +3 -0
- package/example/core/reference.json +3 -0
- package/example/core/reusable/atomic_vectors.json +18 -0
- package/example/core/reusable/band_gap.json +16 -0
- package/example/core/reusable/energy.json +5 -0
- package/example/core/reusable/file_metadata.json +5 -0
- package/example/core/reusable/object_storage_container_data.json +8 -0
- package/example/element.json +14 -0
- package/example/job/compute.json +26 -0
- package/example/job.json +26 -0
- package/example/material.json +94 -0
- package/example/method/categorized_method.json +47 -0
- package/example/method/method_parameters.json +3 -0
- package/example/method.json +7 -0
- package/example/methods_directory/legacy/localorbital.json +4 -0
- package/example/methods_directory/legacy/pseudopotential.json +4 -0
- package/example/methods_directory/legacy/regression.json +61 -0
- package/example/methods_directory/legacy/unknown.json +4 -0
- package/example/methods_directory/mathematical/cg.json +10 -0
- package/example/methods_directory/mathematical/regression.json +65 -0
- package/example/methods_directory/physical/ao/dunning.json +13 -0
- package/example/methods_directory/physical/psp/file.json +49 -0
- package/example/methods_directory/physical/psp.json +16 -0
- package/example/methods_directory/physical/pw.json +9 -0
- package/example/methods_directory/physical/smearing.json +10 -0
- package/example/methods_directory/physical/tetrahedron.json +10 -0
- package/example/model/categorized_model.json +33 -0
- package/example/model/model_parameters.json +7 -0
- package/example/model.json +7 -0
- package/example/models_category/pb/qm/abin/gw.json +7 -0
- package/example/models_category/pb/qm/dft/ksdft.json +6 -0
- package/example/models_category/pb/qm/semp.json +5 -0
- package/example/models_directory/gga.json +15 -0
- package/example/models_directory/gw.json +15 -0
- package/example/models_directory/hybrid.json +15 -0
- package/example/models_directory/lda.json +15 -0
- package/example/models_directory/legacy/dft.json +8 -0
- package/example/models_directory/legacy/ml.json +7 -0
- package/example/models_directory/legacy/unknown.json +7 -0
- package/example/models_directory/re.json +9 -0
- package/example/project.json +21 -0
- package/example/properties_directory/electronic_configuration.json +4 -0
- package/example/properties_directory/elemental/atomic_radius.json +4 -0
- package/example/properties_directory/elemental/electronegativity.json +4 -0
- package/example/properties_directory/elemental/ionization_potential.json +4 -0
- package/example/properties_directory/non-scalar/band_gaps.json +25 -0
- package/example/properties_directory/non-scalar/band_structure.json +47 -0
- package/example/properties_directory/non-scalar/charge_density_profile.json +22 -0
- package/example/properties_directory/non-scalar/density_of_states.json +55 -0
- package/example/properties_directory/non-scalar/dielectric_tensor.json +133 -0
- package/example/properties_directory/non-scalar/file_content.json +8 -0
- package/example/properties_directory/non-scalar/hubbard_u.json +24 -0
- package/example/properties_directory/non-scalar/hubbard_v.json +22 -0
- package/example/properties_directory/non-scalar/hubbard_v_nn.json +24 -0
- package/example/properties_directory/non-scalar/phonon_dispersions.json +41 -0
- package/example/properties_directory/non-scalar/phonon_dos.json +37 -0
- package/example/properties_directory/non-scalar/potential_profile.json +32 -0
- package/example/properties_directory/non-scalar/reaction_energy_profile.json +30 -0
- package/example/properties_directory/non-scalar/stress_tensor.json +21 -0
- package/example/properties_directory/non-scalar/total_energy_contributions.json +44 -0
- package/example/properties_directory/non-scalar/vibrational_spectrum.json +25 -0
- package/example/properties_directory/scalar/electron_affinity.json +5 -0
- package/example/properties_directory/scalar/fermi_energy.json +5 -0
- package/example/properties_directory/scalar/formation_energy.json +5 -0
- package/example/properties_directory/scalar/ionization_potential.json +5 -0
- package/example/properties_directory/scalar/pressure.json +5 -0
- package/example/properties_directory/scalar/reaction_energy_barrier.json +5 -0
- package/example/properties_directory/scalar/surface_energy.json +5 -0
- package/example/properties_directory/scalar/total_energy.json +5 -0
- package/example/properties_directory/scalar/total_force.json +5 -0
- package/example/properties_directory/scalar/valence_band_offset.json +5 -0
- package/example/properties_directory/scalar/zero_point_energy.json +5 -0
- package/example/properties_directory/structural/atomic_forces.json +22 -0
- package/example/properties_directory/structural/basis/atomic_constraints.json +21 -0
- package/example/properties_directory/structural/basis/atomic_coordinate.json +8 -0
- package/example/properties_directory/structural/basis/atomic_coordinates.json +21 -0
- package/example/properties_directory/structural/basis/atomic_element.json +4 -0
- package/example/properties_directory/structural/basis/bonds.json +24 -0
- package/example/properties_directory/structural/basis.json +19 -0
- package/example/properties_directory/structural/density.json +5 -0
- package/example/properties_directory/structural/elemental_ratio.json +5 -0
- package/example/properties_directory/structural/inchi.json +4 -0
- package/example/properties_directory/structural/inchi_key.json +4 -0
- package/example/properties_directory/structural/lattice/lattice_bravais.json +13 -0
- package/example/properties_directory/structural/lattice/lattice_vectors.json +19 -0
- package/example/properties_directory/structural/lattice.json +7 -0
- package/example/properties_directory/structural/magnetic_moments.json +22 -0
- package/example/properties_directory/structural/molecular_pattern.json +71 -0
- package/example/properties_directory/structural/p-norm.json +5 -0
- package/example/properties_directory/structural/symmetry.json +9 -0
- package/example/properties_directory/structural/volume.json +5 -0
- package/example/properties_directory/workflow/convergence/electronic.json +15 -0
- package/example/properties_directory/workflow/convergence/ionic.json +20 -0
- package/example/properties_directory/workflow/convergence/kpoint.json +22 -0
- package/example/property/base.json +21 -0
- package/example/software/application.json +7 -0
- package/example/software/executable.json +20 -0
- package/example/software/flavor.json +9 -0
- package/example/software/template.json +14 -0
- package/example/software_directory/ml/exabyteml.json +6 -0
- package/example/software_directory/ml/unit/execution/evaluate/cross-validate.json +17 -0
- package/example/software_directory/ml/unit/execution/initialize.json +20 -0
- package/example/software_directory/ml/unit/execution/score.json +15 -0
- package/example/software_directory/ml/unit/execution/train.json +26 -0
- package/example/software_directory/ml/unit/processing/data_transformation/manipulation.json +14 -0
- package/example/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.json +26 -0
- package/example/software_directory/ml/unit/processing/feature_selection/filter_based.json +13 -0
- package/example/software_directory/modeling/espresso/arguments.json +5 -0
- package/example/software_directory/modeling/espresso.json +6 -0
- package/example/software_directory/modeling/nwchem.json +6 -0
- package/example/software_directory/modeling/unit/execution.json +16 -0
- package/example/software_directory/modeling/vasp.json +6 -0
- package/example/software_directory/scripting/jupyter-lab.json +8 -0
- package/example/software_directory/scripting/python.json +8 -0
- package/example/software_directory/scripting/shell.json +8 -0
- package/example/software_directory/scripting/unit/execution.json +17 -0
- package/example/system/_material.json +5 -0
- package/example/system/_parent_job.json +5 -0
- package/example/system/_project.json +5 -0
- package/example/system/consistency_check.json +6 -0
- package/example/system/creator.json +5 -0
- package/example/system/entity_reference.json +5 -0
- package/example/system/file_source.json +6 -0
- package/example/system/message.json +14 -0
- package/example/system/owner.json +5 -0
- package/example/workflow/subworkflow.json +18 -0
- package/example/workflow/unit/assignment.json +19 -0
- package/example/workflow/unit/condition.json +22 -0
- package/example/workflow/unit/execution.json +39 -0
- package/example/workflow/unit/input/_inputItemScope.json +4 -0
- package/example/workflow/unit/io/api.json +31 -0
- package/example/workflow/unit/io/db.json +15 -0
- package/example/workflow/unit/io/object_storage.json +7 -0
- package/example/workflow/unit/io.json +41 -0
- package/example/workflow/unit/map.json +16 -0
- package/example/workflow/unit/processing.json +13 -0
- package/example/workflow/unit/reduce.json +16 -0
- package/example/workflow/unit/runtime/runtime_items.json +14 -0
- package/example/workflow/unit.json +8 -0
- package/example/workflow.json +34 -0
- package/lib/js/esse/index.js +83 -0
- package/lib/js/esse/schemaUtils.js +78 -0
- package/lib/js/esse/settings.js +18 -0
- package/lib/js/esse/utils.js +74 -0
- package/lib/js/json_include/index.js +110 -0
- package/lib/js/json_include/settings.js +13 -0
- package/lib/js/json_include/utils.js +22 -0
- package/lib/js/scripts/createEnumsFromYaml.js +74 -0
- package/lib/js/scripts/setSchemaIds.js +156 -0
- package/npmignore +6 -0
- package/package.json +75 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/atomic_positions.json +66 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/atomic_species.json +30 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/cell.json +89 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/cell_parameters.json +36 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/control.json +181 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/electrons.json +157 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/hubbard.json +219 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/ions.json +216 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/k_points.json +87 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x/system.json +649 -0
- package/schema/3pse/file/applications/espresso/7.2/pw.x.json +52 -0
- package/schema/core/abstract/2d_data.json +19 -0
- package/schema/core/abstract/2d_plot.json +29 -0
- package/schema/core/abstract/3d_grid.json +17 -0
- package/schema/core/abstract/3d_tensor.json +11 -0
- package/schema/core/abstract/3d_vector_basis.json +25 -0
- package/schema/core/abstract/point.json +10 -0
- package/schema/core/abstract/vector.json +13 -0
- package/schema/core/primitive/1d_data_series.json +16 -0
- package/schema/core/primitive/3d_lattice.json +40 -0
- package/schema/core/primitive/array_of_3_booleans.json +11 -0
- package/schema/core/primitive/array_of_3_numbers.json +11 -0
- package/schema/core/primitive/array_of_ids.json +17 -0
- package/schema/core/primitive/array_of_strings.json +11 -0
- package/schema/core/primitive/axis.json +18 -0
- package/schema/core/primitive/group_info.json +16 -0
- package/schema/core/primitive/integer_one_or_zero.json +8 -0
- package/schema/core/primitive/linked_list/base_node.json +34 -0
- package/schema/core/primitive/linked_list/named_node.json +14 -0
- package/schema/core/primitive/linked_list/named_node_in_group.json +14 -0
- package/schema/core/primitive/linked_list/node_with_type.json +16 -0
- package/schema/core/primitive/linked_list.json +24 -0
- package/schema/core/primitive/scalar.json +14 -0
- package/schema/core/primitive/slugified_entry.json +21 -0
- package/schema/core/primitive/slugified_entry_or_slug.json +14 -0
- package/schema/core/primitive/string.json +14 -0
- package/schema/core/reference/exabyte.json +19 -0
- package/schema/core/reference/experiment/condition.json +29 -0
- package/schema/core/reference/experiment/location.json +19 -0
- package/schema/core/reference/experiment.json +58 -0
- package/schema/core/reference/literature/name.json +24 -0
- package/schema/core/reference/literature/pages.json +17 -0
- package/schema/core/reference/literature.json +82 -0
- package/schema/core/reference/modeling/exabyte.json +30 -0
- package/schema/core/reference/modeling.json +10 -0
- package/schema/core/reference.json +16 -0
- package/schema/core/reusable/atomic_data/per_orbital.json +22 -0
- package/schema/core/reusable/atomic_data/per_orbital_pair.json +39 -0
- package/schema/core/reusable/atomic_data/value_number.json +13 -0
- package/schema/core/reusable/atomic_data/value_string.json +13 -0
- package/schema/core/reusable/atomic_data_per_orbital_numeric.json +15 -0
- package/schema/core/reusable/atomic_data_per_orbital_pair_numeric.json +15 -0
- package/schema/core/reusable/atomic_orbital.json +32 -0
- package/schema/core/reusable/atomic_scalars.json +17 -0
- package/schema/core/reusable/atomic_strings.json +17 -0
- package/schema/core/reusable/atomic_vectors.json +17 -0
- package/schema/core/reusable/band_gap.json +44 -0
- package/schema/core/reusable/categories.json +29 -0
- package/schema/core/reusable/category_path.json +7 -0
- package/schema/core/reusable/dielectric_tensor_component.json +28 -0
- package/schema/core/reusable/energy.json +29 -0
- package/schema/core/reusable/file_metadata.json +20 -0
- package/schema/core/reusable/frequency_function_matrix.json +23 -0
- package/schema/core/reusable/object_storage_container_data.json +37 -0
- package/schema/definitions/units.json +103 -0
- package/schema/element.json +28 -0
- package/schema/in_memory_entity/base.json +30 -0
- package/schema/in_memory_entity/defaultable.json +13 -0
- package/schema/in_memory_entity/named.json +13 -0
- package/schema/in_memory_entity/named_defaultable.json +16 -0
- package/schema/in_memory_entity/named_defaultable_has_metadata.json +19 -0
- package/schema/in_memory_entity/named_defaultable_runtime_items.json +19 -0
- package/schema/job/base.json +80 -0
- package/schema/job/compute.json +145 -0
- package/schema/job.json +19 -0
- package/schema/material/conventional.json +10 -0
- package/schema/material.json +57 -0
- package/schema/method/categorized_method.json +24 -0
- package/schema/method/method_parameters.json +20 -0
- package/schema/method/unit_method.json +27 -0
- package/schema/method.json +27 -0
- package/schema/methods_category/mathematical/diff/enum_options.json +8 -0
- package/schema/methods_category/mathematical/diff/enum_options.yml +3 -0
- package/schema/methods_category/mathematical/diff/fd.json +15 -0
- package/schema/methods_category/mathematical/diff.json +15 -0
- package/schema/methods_category/mathematical/discr/enum_options.json +8 -0
- package/schema/methods_category/mathematical/discr/enum_options.yml +3 -0
- package/schema/methods_category/mathematical/discr/mesh/enum_options.json +18 -0
- package/schema/methods_category/mathematical/discr/mesh/enum_options.yml +7 -0
- package/schema/methods_category/mathematical/discr/mesh/hybrid.json +15 -0
- package/schema/methods_category/mathematical/discr/mesh/nstruct.json +15 -0
- package/schema/methods_category/mathematical/discr/mesh/struct/cartesian.json +15 -0
- package/schema/methods_category/mathematical/discr/mesh/struct/enum_options.json +8 -0
- package/schema/methods_category/mathematical/discr/mesh/struct/enum_options.yml +3 -0
- package/schema/methods_category/mathematical/discr/mesh/struct.json +15 -0
- package/schema/methods_category/mathematical/discr/mesh.json +15 -0
- package/schema/methods_category/mathematical/discr.json +15 -0
- package/schema/methods_category/mathematical/enum_options.json +45 -0
- package/schema/methods_category/mathematical/enum_options.yml +22 -0
- package/schema/methods_category/mathematical/fapprx/basisexp.json +15 -0
- package/schema/methods_category/mathematical/fapprx/enum_options.json +13 -0
- package/schema/methods_category/mathematical/fapprx/enum_options.yml +5 -0
- package/schema/methods_category/mathematical/fapprx/ipol/enum_options.json +18 -0
- package/schema/methods_category/mathematical/fapprx/ipol/enum_options.yml +7 -0
- package/schema/methods_category/mathematical/fapprx/ipol/lin.json +15 -0
- package/schema/methods_category/mathematical/fapprx/ipol/poly.json +15 -0
- package/schema/methods_category/mathematical/fapprx/ipol/spline.json +15 -0
- package/schema/methods_category/mathematical/fapprx/ipol.json +15 -0
- package/schema/methods_category/mathematical/fapprx.json +15 -0
- package/schema/methods_category/mathematical/intgr/analytic/enum_options.json +20 -0
- package/schema/methods_category/mathematical/intgr/analytic/enum_options.yml +14 -0
- package/schema/methods_category/mathematical/intgr/analytic/volume.json +18 -0
- package/schema/methods_category/mathematical/intgr/analytic.json +15 -0
- package/schema/methods_category/mathematical/intgr/diffeq/enum_options.json +13 -0
- package/schema/methods_category/mathematical/intgr/diffeq/enum_options.yml +5 -0
- package/schema/methods_category/mathematical/intgr/diffeq/order1.json +15 -0
- package/schema/methods_category/mathematical/intgr/diffeq/order2.json +15 -0
- package/schema/methods_category/mathematical/intgr/diffeq.json +15 -0
- package/schema/methods_category/mathematical/intgr/enum_options.json +23 -0
- package/schema/methods_category/mathematical/intgr/enum_options.yml +9 -0
- package/schema/methods_category/mathematical/intgr/numquad/enum_options.json +13 -0
- package/schema/methods_category/mathematical/intgr/numquad/enum_options.yml +5 -0
- package/schema/methods_category/mathematical/intgr/numquad/gauss.json +15 -0
- package/schema/methods_category/mathematical/intgr/numquad/newcot.json +15 -0
- package/schema/methods_category/mathematical/intgr/numquad.json +15 -0
- package/schema/methods_category/mathematical/intgr/transf/enum_options.json +8 -0
- package/schema/methods_category/mathematical/intgr/transf/enum_options.yml +3 -0
- package/schema/methods_category/mathematical/intgr/transf/fourier.json +15 -0
- package/schema/methods_category/mathematical/intgr/transf.json +15 -0
- package/schema/methods_category/mathematical/intgr.json +15 -0
- package/schema/methods_category/mathematical/linalg/dcomp.json +15 -0
- package/schema/methods_category/mathematical/linalg/diag/davidson.json +15 -0
- package/schema/methods_category/mathematical/linalg/diag/enum_options.json +8 -0
- package/schema/methods_category/mathematical/linalg/diag/enum_options.yml +3 -0
- package/schema/methods_category/mathematical/linalg/diag.json +15 -0
- package/schema/methods_category/mathematical/linalg/enum_options.json +23 -0
- package/schema/methods_category/mathematical/linalg/enum_options.yml +9 -0
- package/schema/methods_category/mathematical/linalg/lintra.json +15 -0
- package/schema/methods_category/mathematical/linalg/matf.json +15 -0
- package/schema/methods_category/mathematical/linalg.json +15 -0
- package/schema/methods_category/mathematical/opt/diff/bracket.json +15 -0
- package/schema/methods_category/mathematical/opt/diff/enum_options.json +28 -0
- package/schema/methods_category/mathematical/opt/diff/enum_options.yml +11 -0
- package/schema/methods_category/mathematical/opt/diff/local.json +15 -0
- package/schema/methods_category/mathematical/opt/diff/order1.json +15 -0
- package/schema/methods_category/mathematical/opt/diff/order2.json +15 -0
- package/schema/methods_category/mathematical/opt/diff/ordern/cg.json +15 -0
- package/schema/methods_category/mathematical/opt/diff/ordern/enum_options.json +8 -0
- package/schema/methods_category/mathematical/opt/diff/ordern/enum_options.yml +3 -0
- package/schema/methods_category/mathematical/opt/diff/ordern.json +15 -0
- package/schema/methods_category/mathematical/opt/diff.json +15 -0
- package/schema/methods_category/mathematical/opt/enum_options.json +18 -0
- package/schema/methods_category/mathematical/opt/enum_options.yml +7 -0
- package/schema/methods_category/mathematical/opt/ndiff/direct.json +15 -0
- package/schema/methods_category/mathematical/opt/ndiff/enum_options.json +18 -0
- package/schema/methods_category/mathematical/opt/ndiff/enum_options.yml +7 -0
- package/schema/methods_category/mathematical/opt/ndiff/pop.json +15 -0
- package/schema/methods_category/mathematical/opt/ndiff/stoch.json +15 -0
- package/schema/methods_category/mathematical/opt/ndiff.json +15 -0
- package/schema/methods_category/mathematical/opt/root/bracket.json +15 -0
- package/schema/methods_category/mathematical/opt/root/enum_options.json +13 -0
- package/schema/methods_category/mathematical/opt/root/enum_options.yml +5 -0
- package/schema/methods_category/mathematical/opt/root/iter.json +15 -0
- package/schema/methods_category/mathematical/opt/root.json +15 -0
- package/schema/methods_category/mathematical/opt.json +15 -0
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"j0_val": {
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"label(J)": {
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"description": "label of the atom J (as defined in ATOMIC_SPECIES)"
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"I": {
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"description": "index of the atom I"
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{
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"$id": "3pse/file/applications/espresso/7.2/pw.x/ions",
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"$schema": "http://json-schema.org/draft-04/schema#",
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"title": "ions schema",
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"default": "bfgs",
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"description": "CASE: calculation == 'relax'"
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"default": "verlet",
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"description": "CASE: calculation == 'md'"
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"properties": {
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"ion_dynamics": {
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"damp"
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],
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"default": "bfgs",
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"description": "CASE: calculation == 'vc-relax'"
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}
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"properties": {
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"ion_dynamics": {
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"type": "string",
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"enum": [
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"default": "beeman",
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"description": "CASE: calculation == 'vc-md'"
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"properties": {
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"ion_positions": {
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"type": "string",
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"enum": [
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"default",
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"from_input"
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],
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"default": "default"
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},
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"ion_velocities": {
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"type": "string",
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"enum": [
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"default",
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"from_input"
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],
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"default": "default"
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},
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"pot_extrapolation": {
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"type": "string",
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"enum": [
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"none",
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"atomic",
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],
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"default": "atomic",
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|
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"description": "Used to extrapolate the potential from preceding ionic steps."
|
|
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},
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|
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"wfc_extrapolation": {
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],
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"default": "none",
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"description": "Used to extrapolate the wavefunctions from preceding ionic steps."
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"remove_rigid_rot": {
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"description": "This keyword is useful when simulating the dynamics and/or the thermodynamics of an isolated system. If set to true the total torque of the internal forces is set to zero by adding new forces that compensate the spurious interaction with the periodic images. This allows for the use of smaller supercells."
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"ion_temperature": {
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"enum": [
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"rescale-v",
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"initial",
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],
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"default": "not_controlled"
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},
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|
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"tempw": {
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"type": "number",
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"description": "Starting temperature (Kelvin) in MD runs target temperature for most thermostats.",
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"default": 300
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},
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"tolp": {
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"type": "number",
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|
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"description": "Tolerance for velocity rescaling. Velocities are rescaled if the run-averaged and target temperature differ more than tolp.",
|
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"default": 100
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},
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"delta_t": {
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"type": "number",
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"default": 1
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},
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|
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"nraise": {
|
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"type": "integer",
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"default": 1
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},
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"refold_pos": {
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|
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"type": "boolean",
|
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|
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"default": false,
|
|
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|
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"description": "This keyword applies only in the case of molecular dynamics or damped dynamics. If true the ions are refolded at each step into the supercell."
|
|
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|
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},
|
|
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|
+
"upscale": {
|
|
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|
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"type": "number",
|
|
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|
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"description": "Max reduction factor for conv_thr during structural optimization conv_thr is automatically reduced when the relaxation approaches convergence so that forces are still accurate, but conv_thr will not be reduced to less that conv_thr / upscale.",
|
|
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|
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"default": 100
|
|
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|
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},
|
|
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|
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"bfgs_ndim": {
|
|
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|
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"type": "integer",
|
|
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|
+
"default": 1,
|
|
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|
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"description": "Number of old forces and displacements vectors used in the PULAY mixing of the residual vectors obtained on the basis of the inverse hessian matrix given by the BFGS algorithm."
|
|
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|
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},
|
|
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|
+
"trust_radius_max": {
|
|
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|
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"type": "number",
|
|
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|
+
"description": "Maximum ionic displacement in the structural relaxation. (bfgs only)",
|
|
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|
+
"default": 0.8
|
|
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|
+
},
|
|
166
|
+
"trust_radius_min": {
|
|
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|
+
"type": "number",
|
|
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|
+
"description": "Minimum ionic displacement in the structural relaxation BFGS is reset when trust_radius < trust_radius_min. (bfgs only)",
|
|
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|
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"default": 0.001
|
|
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|
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},
|
|
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|
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"trust_radius_ini": {
|
|
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|
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"type": "number",
|
|
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|
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"description": "Initial ionic displacement in the structural relaxation. (bfgs only)",
|
|
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|
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"default": 0.5
|
|
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|
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},
|
|
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|
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"w_1": {
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|
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|
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"type": "number",
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|
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"default": 0.01
|
|
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|
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},
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|
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|
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"w_2": {
|
|
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|
+
"type": "number",
|
|
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|
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"description": "Parameters used in line search based on the Wolfe conditions. (bfgs only)",
|
|
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|
+
"default": 0.5
|
|
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|
+
},
|
|
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|
+
"fire_alpha_init": {
|
|
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|
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"type": "number",
|
|
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|
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"description": "Initial value of the alpha mixing factor in the FIRE minimization scheme; recommended values are between 0.1 and 0.3",
|
|
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|
+
"default": 0.2
|
|
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|
+
},
|
|
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|
+
"fire_falpha": {
|
|
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|
+
"type": "number",
|
|
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|
+
"description": "Scaling of the alpha mixing parameter for steps with P > 0;",
|
|
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|
+
"default": 0.99
|
|
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|
+
},
|
|
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|
+
"fire_nmin": {
|
|
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|
+
"type": "integer",
|
|
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|
+
"default": 5,
|
|
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|
+
"description": "Minimum number of steps with P > 0 before increase of dt"
|
|
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|
+
},
|
|
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|
+
"fire_f_inc": {
|
|
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|
+
"type": "number",
|
|
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|
+
"description": "Factor for increasing dt",
|
|
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|
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"default": 1.1
|
|
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|
+
},
|
|
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|
+
"fire_f_dec": {
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|
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|
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"type": "number",
|
|
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|
+
"description": "Factor for decreasing dt",
|
|
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|
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"default": 0.5
|
|
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|
+
},
|
|
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|
+
"fire_dtmax": {
|
|
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|
+
"type": "number",
|
|
212
|
+
"description": "Determines the maximum value of dt in the FIRE minimization; dtmax = fire_dtmax*dt",
|
|
213
|
+
"default": 10
|
|
214
|
+
}
|
|
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|
+
}
|
|
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|
+
}
|
|
@@ -0,0 +1,87 @@
|
|
|
1
|
+
{
|
|
2
|
+
"$id": "3pse/file/applications/espresso/7.2/pw.x/k-points",
|
|
3
|
+
"$schema": "http://json-schema.org/draft-04/schema#",
|
|
4
|
+
"title": "k points schema",
|
|
5
|
+
"type": "object",
|
|
6
|
+
"additionalProperties": false,
|
|
7
|
+
"properties": {
|
|
8
|
+
"card_option": {
|
|
9
|
+
"type": "string",
|
|
10
|
+
"enum": [
|
|
11
|
+
"tpiba",
|
|
12
|
+
"automatic",
|
|
13
|
+
"crystal",
|
|
14
|
+
"gamma",
|
|
15
|
+
"tpiba_b",
|
|
16
|
+
"crystal_b",
|
|
17
|
+
"tpiba_c",
|
|
18
|
+
"crystal_c"
|
|
19
|
+
]
|
|
20
|
+
},
|
|
21
|
+
"values": {
|
|
22
|
+
"oneOf": [
|
|
23
|
+
{
|
|
24
|
+
"type": "array",
|
|
25
|
+
"description": "K_POINTS tpiba | crystal | tpiba_b | crystal_b | tpiba_c | crystal_c",
|
|
26
|
+
"items": {
|
|
27
|
+
"type": "object",
|
|
28
|
+
"additionalProperties": false,
|
|
29
|
+
"properties": {
|
|
30
|
+
"nks": {
|
|
31
|
+
"type": "integer",
|
|
32
|
+
"description": "Number of supplied special k-points."
|
|
33
|
+
},
|
|
34
|
+
"xk_x": {
|
|
35
|
+
"type": "number"
|
|
36
|
+
},
|
|
37
|
+
"xk_y": {
|
|
38
|
+
"type": "number"
|
|
39
|
+
},
|
|
40
|
+
"xk_z": {
|
|
41
|
+
"type": "number"
|
|
42
|
+
},
|
|
43
|
+
"wk": {
|
|
44
|
+
"type": "number"
|
|
45
|
+
}
|
|
46
|
+
}
|
|
47
|
+
}
|
|
48
|
+
},
|
|
49
|
+
{
|
|
50
|
+
"type": "object",
|
|
51
|
+
"description": "K_POINTS automatic",
|
|
52
|
+
"additionalProperties": false,
|
|
53
|
+
"properties": {
|
|
54
|
+
"nk1": {
|
|
55
|
+
"type": "integer",
|
|
56
|
+
"description": "Number of supplied special k-points."
|
|
57
|
+
},
|
|
58
|
+
"nk2": {
|
|
59
|
+
"type": "integer",
|
|
60
|
+
"description": "Number of supplied special k-points."
|
|
61
|
+
},
|
|
62
|
+
"nk3": {
|
|
63
|
+
"type": "integer",
|
|
64
|
+
"description": "Number of supplied special k-points."
|
|
65
|
+
},
|
|
66
|
+
"sk1": {
|
|
67
|
+
"type": "integer",
|
|
68
|
+
"description": "Number of supplied special k-points."
|
|
69
|
+
},
|
|
70
|
+
"sk2": {
|
|
71
|
+
"type": "integer",
|
|
72
|
+
"description": "Number of supplied special k-points."
|
|
73
|
+
},
|
|
74
|
+
"sk3": {
|
|
75
|
+
"type": "integer",
|
|
76
|
+
"description": "Number of supplied special k-points."
|
|
77
|
+
}
|
|
78
|
+
}
|
|
79
|
+
},
|
|
80
|
+
{
|
|
81
|
+
"type": "null",
|
|
82
|
+
"description": "K_POINTS gamma"
|
|
83
|
+
}
|
|
84
|
+
]
|
|
85
|
+
}
|
|
86
|
+
}
|
|
87
|
+
}
|