@mastra/code-sdk 1.12.1-alpha.2 → 1.13.0-alpha.4

package/dist/agents/prompts/agent-instructions.d.ts

@@ -55,6 +55,34 @@ export declare function loadAgentInstructions(projectPath: string, configDirName
     skipGlobal?: boolean;
 }): InstructionSource[];
 export declare function getStaticallyLoadedInstructionPaths(projectPath: string, configDirName?: string, projectReader?: InstructionFileReader): string[];
+/**
+ * Directories a session's project instructions load from: the host's
+ * `instructionRoots` (resolved against the working directory, the session's
+ * own checkout first) when it sets any, else the working directory itself.
+ */
+export declare function sessionInstructionRoots(workingDir: string, instructionRoots?: readonly string[]): string[];
+/**
+ * The instruction files a session's system prompt carries. Global files load
+ * once (unless `skipGlobal`), then each instruction root's project files, in
+ * root order. An untrusted checkout never reads project files off the working
+ * tree: with a `baseRef` the first root (the session's own checkout) is served
+ * from that ref and the other roots are skipped; without one no project files
+ * load.
+ */
+export declare function loadSessionInstructions({ workingDir, instructionRoots, configDir, untrustedCheckout, baseRef, skipGlobal, }: {
+    workingDir: string;
+    instructionRoots?: readonly string[];
+    configDir?: string;
+    untrustedCheckout?: boolean;
+    baseRef?: string;
+    skipGlobal?: boolean;
+}): InstructionSource[];
+/**
+ * Paths of loaded instruction sources, each project source also under its
+ * root's canonical path, so reactive reminders never repeat a file the
+ * system prompt already carries.
+ */
+export declare function instructionSourcePaths(sources: InstructionSource[], roots: readonly string[]): string[];
 /** Heading the agent-instructions block is introduced by in the system prompt. */
 export declare const AGENT_INSTRUCTIONS_HEADING = "# Agent Instructions";
 /**

package/dist/agents/prompts/agent-instructions.d.ts.map

@@ -1 +1 @@
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package/dist/agents/prompts/agent-instructions.js

@@ -203,11 +203,50 @@ function loadAgentInstructions(projectPath, configDirName = DEFAULT_CONFIG_DIR,
 	return sources;
 }
 function getStaticallyLoadedInstructionPaths(projectPath, configDirName = DEFAULT_CONFIG_DIR, projectReader) {
-	const canonicalRoot = realpathOrResolved(projectPath);
-	return loadAgentInstructions(projectPath, configDirName, projectReader).flatMap((source) => {
+	return instructionSourcePaths(loadAgentInstructions(projectPath, configDirName, projectReader), [projectPath]);
+}
+/**
+* Directories a session's project instructions load from: the host's
+* `instructionRoots` (resolved against the working directory, the session's
+* own checkout first) when it sets any, else the working directory itself.
+*/
+function sessionInstructionRoots(workingDir, instructionRoots) {
+	if (!instructionRoots?.length) return [workingDir];
+	return [...new Set(instructionRoots.map((root) => resolve(workingDir, root)))];
+}
+/**
+* The instruction files a session's system prompt carries. Global files load
+* once (unless `skipGlobal`), then each instruction root's project files, in
+* root order. An untrusted checkout never reads project files off the working
+* tree: with a `baseRef` the first root (the session's own checkout) is served
+* from that ref and the other roots are skipped; without one no project files
+* load.
+*/
+function loadSessionInstructions({ workingDir, instructionRoots, configDir, untrustedCheckout = false, baseRef, skipGlobal = false }) {
+	const [primary, ...others] = sessionInstructionRoots(workingDir, instructionRoots);
+	const sources = loadAgentInstructions(primary, configDir, untrustedCheckout ? baseRef ? createGitRefInstructionReader(primary, baseRef) : {
+		exists: () => false,
+		read: () => ""
+	} : void 0, { skipGlobal });
+	if (untrustedCheckout) return sources;
+	for (const root of others) sources.push(...loadAgentInstructions(root, configDir, void 0, { skipGlobal: true }));
+	return sources;
+}
+/**
+* Paths of loaded instruction sources, each project source also under its
+* root's canonical path, so reactive reminders never repeat a file the
+* system prompt already carries.
+*/
+function instructionSourcePaths(sources, roots) {
+	return sources.flatMap((source) => {
 		const path = normalize(source.path);
 		if (source.scope !== "project") return [path];
-		const canonicalPath = join(canonicalRoot, relative(projectPath, path));
+		const root = roots.find((candidate) => {
+			const rel = relative(candidate, path);
+			return rel !== ".." && !rel.startsWith(`..${sep}`) && !isAbsolute(rel);
+		});
+		if (!root) return [path];
+		const canonicalPath = join(realpathOrResolved(root), relative(root, path));
 		return path === canonicalPath ? [path] : [path, canonicalPath];
 	});
 }
@@ -231,6 +270,6 @@ function formatAgentInstructions(sources) {
 	return `\n${AGENT_INSTRUCTIONS_HEADING}\n\n${sections.join("\n\n")}\n`;
 }
 //#endregion
-export { AGENT_INSTRUCTIONS_HEADING, createGitRefInstructionReader, createGitRefReminderReader, formatAgentInstructions, formatInstructionSource, getStaticallyLoadedInstructionPaths, loadAgentInstructions };
+export { AGENT_INSTRUCTIONS_HEADING, createGitRefInstructionReader, createGitRefReminderReader, formatAgentInstructions, formatInstructionSource, getStaticallyLoadedInstructionPaths, instructionSourcePaths, loadAgentInstructions, loadSessionInstructions, sessionInstructionRoots };
 
 //# sourceMappingURL=agent-instructions.js.map

package/dist/agents/prompts/agent-instructions.js.map

@@ -1 +1 @@
-{"version":3,"file":"agent-instructions.js","names":[],"sources":["../../../src/agents/prompts/agent-instructions.ts"],"sourcesContent":["/**\n * Load project and global agent instruction files (AGENTS.md, CLAUDE.md).\n * Prefers AGENTS.md over CLAUDE.md when multiple exist at the same location.\n */\n\nimport { execFileSync } from 'node:child_process';\nimport { existsSync, readFileSync, realpathSync, statSync } from 'node:fs';\nimport { homedir } from 'node:os';\nimport { dirname, isAbsolute, join, normalize, relative, resolve, sep } from 'node:path';\nimport { DEFAULT_CONFIG_DIR } from '../../constants.js';\n\n// Filenames to check, in order of preference\nconst INSTRUCTION_FILES = ['AGENTS.md', 'CLAUDE.md'];\n\n// Locations to scan (relative to project root or home)\nconst PROJECT_LOCATIONS = [\n  '', // project root\n  '.claude',\n  '.mastracode',\n];\n\nconst GLOBAL_LOCATIONS = ['.claude', '.mastracode', '.config/claude', '.config/mastracode'];\n\nexport interface InstructionSource {\n  path: string;\n  content: string;\n  scope: 'global' | 'project';\n  /** Git ref the content was read from, when not read off the working tree. */\n  ref?: string;\n}\n\n/**\n * Reads project-scope instruction files. The default implementation reads the\n * working tree via `fs`; alternative readers can serve content from another\n * source (e.g. a trusted git ref) while keeping working-tree paths as the\n * addressing scheme.\n */\nexport interface InstructionFileReader {\n  exists(path: string): boolean;\n  read(path: string): string;\n  /** Git ref backing this reader, recorded on the loaded sources. */\n  ref?: string;\n}\n\nconst fsInstructionReader: InstructionFileReader = {\n  exists: path => existsSync(path),\n  read: path => readFileSync(path, 'utf-8'),\n};\n\nfunction realpathOrResolved(path: string): string {\n  try {\n    return realpathSync(path);\n  } catch {\n    return resolve(path);\n  }\n}\n\nfunction createProjectPathResolver(projectPath: string): (path: string) => string | null {\n  const canonicalRoot = realpathOrResolved(projectPath);\n  return path => {\n    const rel = relative(projectPath, path);\n    if (rel !== '..' && !rel.startsWith(`..${sep}`) && !isAbsolute(rel)) return rel.split(sep).join('/');\n\n    // Match an alias of the project root, not the target of a checkout-controlled\n    // descendant symlink. Missing descendants must still resolve against the ref.\n    let ancestor = resolve(path);\n    let projectRelativePath: string | null = null;\n    while (true) {\n      if (realpathOrResolved(ancestor) === canonicalRoot) {\n        projectRelativePath = relative(ancestor, path).split(sep).join('/');\n      }\n      const parent = dirname(ancestor);\n      if (parent === ancestor) return projectRelativePath;\n      ancestor = parent;\n    }\n  };\n}\n\n/**\n * Create a reader that serves instruction files from a git ref instead of the\n * working tree. Paths are still addressed as working-tree paths under\n * `projectPath`; content comes from `git show <ref>:<relpath>` so an untrusted\n * checkout (e.g. a PR branch under review) cannot influence what is loaded.\n * Tries `origin/<ref>` first (remote truth), then the local ref. Any git\n * failure (missing ref, missing file, no repo) reports the file as absent.\n */\nexport function createGitRefInstructionReader(projectPath: string, ref: string): InstructionFileReader {\n  const toRelative = createProjectPathResolver(projectPath);\n  const show = (path: string): string | null => {\n    const rel = toRelative(path);\n    if (!rel) return null;\n    for (const candidate of [`origin/${ref}`, ref]) {\n      try {\n        return execFileSync('git', ['-C', projectPath, 'show', `${candidate}:${rel}`], {\n          encoding: 'utf-8',\n          stdio: ['ignore', 'pipe', 'ignore'],\n          maxBuffer: 1024 * 1024,\n        });\n      } catch {\n        // Ref or file missing at this candidate — try the next one.\n      }\n    }\n    return null;\n  };\n  return {\n    ref,\n    exists: path => show(path) !== null,\n    read: path => {\n      const content = show(path);\n      if (content === null) throw new Error(`Not found at ref ${ref}: ${path}`);\n      return content;\n    },\n  };\n}\n\n/**\n * Reader for the reactive reminder channel (AgentsMDInjector) that serves\n * paths under `projectPath` from a trusted git ref. Paths outside the project\n * fall back to the operator machine's filesystem (those are trusted); paths\n * inside the project are only ever resolved against the ref, never the\n * working tree, so an untrusted checkout cannot feed content in.\n */\nexport function createGitRefReminderReader(\n  projectPath: string,\n  ref: string,\n): {\n  pathExists: (path: string) => boolean;\n  isDirectory: (path: string) => boolean;\n  readFile: (path: string) => string;\n  getPathIdentity: (path: string) => string;\n} {\n  const gitReader = createGitRefInstructionReader(projectPath, ref);\n  const toRelative = createProjectPathResolver(projectPath);\n  const canonicalRoot = realpathOrResolved(projectPath);\n  const objectType = (rel: string): string | null => {\n    if (rel === '') return 'tree'; // project root\n    for (const candidate of [`origin/${ref}`, ref]) {\n      try {\n        return execFileSync('git', ['-C', projectPath, 'cat-file', '-t', `${candidate}:${rel}`], {\n          encoding: 'utf-8',\n          stdio: ['ignore', 'pipe', 'ignore'],\n        }).trim();\n      } catch {\n        // Ref or object missing at this candidate — try the next one.\n      }\n    }\n    return null;\n  };\n  return {\n    pathExists: path => {\n      const rel = toRelative(path);\n      if (rel === null) return existsSync(path);\n      return objectType(rel) !== null;\n    },\n    isDirectory: path => {\n      const rel = toRelative(path);\n      if (rel === null) {\n        try {\n          return statSync(path).isDirectory();\n        } catch {\n          return false;\n        }\n      }\n      return objectType(rel) === 'tree';\n    },\n    readFile: path => {\n      const rel = toRelative(path);\n      if (rel === null) return readFileSync(path, 'utf-8');\n      return gitReader.read(path);\n    },\n    getPathIdentity: path => {\n      const rel = toRelative(path);\n      // Only canonicalize the project root: checkout symlinks do not define\n      // file identity in the trusted ref, including files missing on disk.\n      return rel === null ? realpathOrResolved(path) : join(canonicalRoot, rel);\n    },\n  };\n}\n\n/**\n * Find the first existing instruction file at a given base path.\n * Prefers AGENTS.md over CLAUDE.md.\n */\nfunction findInstructionFile(basePath: string, reader: InstructionFileReader = fsInstructionReader): string | null {\n  for (const filename of INSTRUCTION_FILES) {\n    const fullPath = join(basePath, filename);\n    if (reader.exists(fullPath)) {\n      return fullPath;\n    }\n  }\n  return null;\n}\n\n/**\n * Load all agent instruction files from global and project locations.\n * Returns an array of instruction sources, with global ones first.\n *\n * `projectReader` controls where project-scope content comes from (defaults to\n * the working tree). Global instructions read the operator machine's\n * filesystem, unless `skipGlobal` keeps them out entirely.\n */\nexport function loadAgentInstructions(\n  projectPath: string,\n  configDirName = DEFAULT_CONFIG_DIR,\n  projectReader: InstructionFileReader = fsInstructionReader,\n  { skipGlobal = false }: { skipGlobal?: boolean } = {},\n): InstructionSource[] {\n  const sources: InstructionSource[] = [];\n  const home = homedir();\n\n  // Derive location arrays from the base constants, substituting the config dir name\n  const projectLocations = PROJECT_LOCATIONS.map(loc => (loc === '.mastracode' ? configDirName : loc));\n  const globalLocations = skipGlobal\n    ? []\n    : GLOBAL_LOCATIONS.map(loc => {\n        if (loc === '.mastracode') return configDirName;\n        // XDG-style path (~/.config/<name>): strip the leading dot since the\n        // .config/ prefix already signals a hidden/config directory.\n        if (loc === '.config/mastracode') return '.config/' + configDirName.replace(/^\\./, '');\n        return loc;\n      });\n\n  // Load global instructions first\n  for (const location of globalLocations) {\n    const basePath = join(home, location);\n    const filePath = findInstructionFile(basePath);\n    if (filePath) {\n      try {\n        const content = readFileSync(filePath, 'utf-8').trim();\n        if (content) {\n          sources.push({ path: filePath, content, scope: 'global' });\n          break; // Only use first found global instruction file\n        }\n      } catch {\n        // Skip unreadable files\n      }\n    }\n  }\n\n  // Load project instructions\n  for (const location of projectLocations) {\n    const basePath = location ? join(projectPath, location) : projectPath;\n    const filePath = findInstructionFile(basePath, projectReader);\n    if (filePath) {\n      try {\n        const content = projectReader.read(filePath).trim();\n        if (content) {\n          sources.push({\n            path: filePath,\n            content,\n            scope: 'project',\n            ...(projectReader.ref ? { ref: projectReader.ref } : {}),\n          });\n          break; // Only use first found project instruction file\n        }\n      } catch {\n        // Skip unreadable files\n      }\n    }\n  }\n\n  return sources;\n}\n\nexport function getStaticallyLoadedInstructionPaths(\n  projectPath: string,\n  configDirName = DEFAULT_CONFIG_DIR,\n  projectReader?: InstructionFileReader,\n): string[] {\n  const canonicalRoot = realpathOrResolved(projectPath);\n  return loadAgentInstructions(projectPath, configDirName, projectReader).flatMap(source => {\n    const path = normalize(source.path);\n    if (source.scope !== 'project') return [path];\n    const canonicalPath = join(canonicalRoot, relative(projectPath, path));\n    return path === canonicalPath ? 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The default implementation reads the\n * working tree via `fs`; alternative readers can serve content from another\n * source (e.g. a trusted git ref) while keeping working-tree paths as the\n * addressing scheme.\n */\nexport interface InstructionFileReader {\n  exists(path: string): boolean;\n  read(path: string): string;\n  /** Git ref backing this reader, recorded on the loaded sources. */\n  ref?: string;\n}\n\nconst fsInstructionReader: InstructionFileReader = {\n  exists: path => existsSync(path),\n  read: path => readFileSync(path, 'utf-8'),\n};\n\nfunction realpathOrResolved(path: string): string {\n  try {\n    return realpathSync(path);\n  } catch {\n    return resolve(path);\n  }\n}\n\nfunction createProjectPathResolver(projectPath: string): (path: string) => string | null {\n  const canonicalRoot = realpathOrResolved(projectPath);\n  return path => {\n    const rel = relative(projectPath, path);\n    if (rel !== '..' && !rel.startsWith(`..${sep}`) && !isAbsolute(rel)) return rel.split(sep).join('/');\n\n    // Match an alias of the project root, not the target of a checkout-controlled\n    // descendant symlink. Missing descendants must still resolve against the ref.\n    let ancestor = resolve(path);\n    let projectRelativePath: string | null = null;\n    while (true) {\n      if (realpathOrResolved(ancestor) === canonicalRoot) {\n        projectRelativePath = relative(ancestor, path).split(sep).join('/');\n      }\n      const parent = dirname(ancestor);\n      if (parent === ancestor) return projectRelativePath;\n      ancestor = parent;\n    }\n  };\n}\n\n/**\n * Create a reader that serves instruction files from a git ref instead of the\n * working tree. Paths are still addressed as working-tree paths under\n * `projectPath`; content comes from `git show <ref>:<relpath>` so an untrusted\n * checkout (e.g. a PR branch under review) cannot influence what is loaded.\n * Tries `origin/<ref>` first (remote truth), then the local ref. Any git\n * failure (missing ref, missing file, no repo) reports the file as absent.\n */\nexport function createGitRefInstructionReader(projectPath: string, ref: string): InstructionFileReader {\n  const toRelative = createProjectPathResolver(projectPath);\n  const show = (path: string): string | null => {\n    const rel = toRelative(path);\n    if (!rel) return null;\n    for (const candidate of [`origin/${ref}`, ref]) {\n      try {\n        return execFileSync('git', ['-C', projectPath, 'show', `${candidate}:${rel}`], {\n          encoding: 'utf-8',\n          stdio: ['ignore', 'pipe', 'ignore'],\n          maxBuffer: 1024 * 1024,\n        });\n      } catch {\n        // Ref or file missing at this candidate — try the next one.\n      }\n    }\n    return null;\n  };\n  return {\n    ref,\n    exists: path => show(path) !== null,\n    read: path => {\n      const content = show(path);\n      if (content === null) throw new Error(`Not found at ref ${ref}: ${path}`);\n      return content;\n    },\n  };\n}\n\n/**\n * Reader for the reactive reminder channel (AgentsMDInjector) that serves\n * paths under `projectPath` from a trusted git ref. Paths outside the project\n * fall back to the operator machine's filesystem (those are trusted); paths\n * inside the project are only ever resolved against the ref, never the\n * working tree, so an untrusted checkout cannot feed content in.\n */\nexport function createGitRefReminderReader(\n  projectPath: string,\n  ref: string,\n): {\n  pathExists: (path: string) => boolean;\n  isDirectory: (path: string) => boolean;\n  readFile: (path: string) => string;\n  getPathIdentity: (path: string) => string;\n} {\n  const gitReader = createGitRefInstructionReader(projectPath, ref);\n  const toRelative = createProjectPathResolver(projectPath);\n  const canonicalRoot = realpathOrResolved(projectPath);\n  const objectType = (rel: string): string | null => {\n    if (rel === '') return 'tree'; // project root\n    for (const candidate of [`origin/${ref}`, ref]) {\n      try {\n        return execFileSync('git', ['-C', projectPath, 'cat-file', '-t', `${candidate}:${rel}`], {\n          encoding: 'utf-8',\n          stdio: ['ignore', 'pipe', 'ignore'],\n        }).trim();\n      } catch {\n        // Ref or object missing at this candidate — try the next one.\n      }\n    }\n    return null;\n  };\n  return {\n    pathExists: path => {\n      const rel = toRelative(path);\n      if (rel === null) return existsSync(path);\n      return objectType(rel) !== null;\n    },\n    isDirectory: path => {\n      const rel = toRelative(path);\n      if (rel === null) {\n        try {\n          return statSync(path).isDirectory();\n        } catch {\n          return false;\n        }\n      }\n      return objectType(rel) === 'tree';\n    },\n    readFile: path => {\n      const rel = toRelative(path);\n      if (rel === null) return readFileSync(path, 'utf-8');\n      return gitReader.read(path);\n    },\n    getPathIdentity: path => {\n      const rel = toRelative(path);\n      // Only canonicalize the project root: checkout symlinks do not define\n      // file identity in the trusted ref, including files missing on disk.\n      return rel === null ? realpathOrResolved(path) : join(canonicalRoot, rel);\n    },\n  };\n}\n\n/**\n * Find the first existing instruction file at a given base path.\n * Prefers AGENTS.md over CLAUDE.md.\n */\nfunction findInstructionFile(basePath: string, reader: InstructionFileReader = fsInstructionReader): string | null {\n  for (const filename of INSTRUCTION_FILES) {\n    const fullPath = join(basePath, filename);\n    if (reader.exists(fullPath)) {\n      return fullPath;\n    }\n  }\n  return null;\n}\n\n/**\n * Load all agent instruction files from global and project locations.\n * Returns an array of instruction sources, with global ones first.\n *\n * `projectReader` controls where project-scope content comes from (defaults to\n * the working tree). Global instructions read the operator machine's\n * filesystem, unless `skipGlobal` keeps them out entirely.\n */\nexport function loadAgentInstructions(\n  projectPath: string,\n  configDirName = DEFAULT_CONFIG_DIR,\n  projectReader: InstructionFileReader = fsInstructionReader,\n  { skipGlobal = false }: { skipGlobal?: boolean } = {},\n): InstructionSource[] {\n  const sources: InstructionSource[] = [];\n  const home = homedir();\n\n  // Derive location arrays from the base constants, substituting the config dir name\n  const projectLocations = PROJECT_LOCATIONS.map(loc => (loc === '.mastracode' ? configDirName : loc));\n  const globalLocations = skipGlobal\n    ? []\n    : GLOBAL_LOCATIONS.map(loc => {\n        if (loc === '.mastracode') return configDirName;\n        // XDG-style path (~/.config/<name>): strip the leading dot since the\n        // .config/ prefix already signals a hidden/config directory.\n        if (loc === '.config/mastracode') return '.config/' + configDirName.replace(/^\\./, '');\n        return loc;\n      });\n\n  // Load global instructions first\n  for (const location of globalLocations) {\n    const basePath = join(home, location);\n    const filePath = findInstructionFile(basePath);\n    if (filePath) {\n      try {\n        const content = readFileSync(filePath, 'utf-8').trim();\n        if (content) {\n          sources.push({ path: filePath, content, scope: 'global' });\n          break; // Only use first found global instruction file\n        }\n      } catch {\n        // Skip unreadable files\n      }\n    }\n  }\n\n  // Load project instructions\n  for (const location of projectLocations) {\n    const basePath = location ? join(projectPath, location) : projectPath;\n    const filePath = findInstructionFile(basePath, projectReader);\n    if (filePath) {\n      try {\n        const content = projectReader.read(filePath).trim();\n        if (content) {\n          sources.push({\n            path: filePath,\n            content,\n            scope: 'project',\n            ...(projectReader.ref ? { ref: projectReader.ref } : {}),\n          });\n          break; // Only use first found project instruction file\n        }\n      } catch {\n        // Skip unreadable files\n      }\n    }\n  }\n\n  return sources;\n}\n\nexport function getStaticallyLoadedInstructionPaths(\n  projectPath: string,\n  configDirName = DEFAULT_CONFIG_DIR,\n  projectReader?: InstructionFileReader,\n): string[] {\n  return instructionSourcePaths(loadAgentInstructions(projectPath, configDirName, projectReader), [projectPath]);\n}\n\n/**\n * Directories a session's project instructions load from: the host's\n * `instructionRoots` (resolved against the working directory, the session's\n * own checkout first) when it sets any, else the working directory itself.\n */\nexport function sessionInstructionRoots(workingDir: string, instructionRoots?: readonly string[]): string[] {\n  if (!instructionRoots?.length) return [workingDir];\n  return [...new Set(instructionRoots.map(root => resolve(workingDir, root)))];\n}\n\n/**\n * The instruction files a session's system prompt carries. Global files load\n * once (unless `skipGlobal`), then each instruction root's project files, in\n * root order. An untrusted checkout never reads project files off the working\n * tree: with a `baseRef` the first root (the session's own checkout) is served\n * from that ref and the other roots are skipped; without one no project files\n * load.\n */\nexport function loadSessionInstructions({\n  workingDir,\n  instructionRoots,\n  configDir,\n  untrustedCheckout = false,\n  baseRef,\n  skipGlobal = false,\n}: {\n  workingDir: string;\n  instructionRoots?: readonly string[];\n  configDir?: string;\n  untrustedCheckout?: boolean;\n  baseRef?: string;\n  skipGlobal?: boolean;\n}): InstructionSource[] {\n  const [primary, ...others] = sessionInstructionRoots(workingDir, instructionRoots);\n  const primaryReader = untrustedCheckout\n    ? baseRef\n      ? createGitRefInstructionReader(primary!, baseRef)\n      : { exists: () => false, read: () => '' }\n    : undefined;\n  const sources = loadAgentInstructions(primary!, configDir, primaryReader, { skipGlobal });\n  if (untrustedCheckout) return sources;\n  for (const root of others) {\n    sources.push(...loadAgentInstructions(root, configDir, undefined, { skipGlobal: true }));\n  }\n  return sources;\n}\n\n/**\n * Paths of loaded instruction sources, each project source also under its\n * root's canonical path, so reactive reminders never repeat a file the\n * system prompt already carries.\n */\nexport function instructionSourcePaths(sources: InstructionSource[], roots: readonly string[]): string[] {\n  return sources.flatMap(source => {\n    const path = normalize(source.path);\n    if (source.scope !== 'project') return [path];\n    const root = roots.find(candidate => {\n      const rel = relative(candidate, path);\n      return rel !== '..' && !rel.startsWith(`..${sep}`) && !isAbsolute(rel);\n    });\n    if (!root) return [path];\n    const canonicalPath = join(realpathOrResolved(root), relative(root, path));\n    return path === canonicalPath ? [path] : [path, canonicalPath];\n  });\n}\n\n/** Heading the agent-instructions block is introduced by in the system prompt. */\nexport const AGENT_INSTRUCTIONS_HEADING = '# Agent Instructions';\n\n/**\n * Format a single instruction source as it appears in the system prompt.\n *\n * Exported so callers that attribute prompt cost per source (the `/context`\n * audit) measure the exact block that is sent rather than reconstructing it.\n */\nexport function formatInstructionSource(source: InstructionSource): string {\n  const label = source.scope === 'global' ? 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`\\n${AGENT_INSTRUCTIONS_HEADING}\\n\\n${sections.join('\\n\\n')}\\n`;\n}\n"],"mappings":";;;;;;;;;;AAYA,MAAM,oBAAoB,CAAC,aAAa,WAAW;AAGnD,MAAM,oBAAoB;CACxB;CACA;CACA;AACF;AAEA,MAAM,mBAAmB;CAAC;CAAW;CAAe;CAAkB;AAAoB;AAuB1F,MAAM,sBAA6C;CACjD,SAAQ,SAAQ,WAAW,IAAI;CAC/B,OAAM,SAAQ,aAAa,MAAM,OAAO;AAC1C;AAEA,SAAS,mBAAmB,MAAsB;CAChD,IAAI;EACF,OAAO,aAAa,IAAI;CAC1B,QAAQ;EACN,OAAO,QAAQ,IAAI;CACrB;AACF;AAEA,SAAS,0BAA0B,aAAsD;CACvF,MAAM,gBAAgB,mBAAmB,WAAW;CACpD,QAAO,SAAQ;EACb,MAAM,MAAM,SAAS,aAAa,IAAI;EACtC,IAAI,QAAQ,QAAQ,CAAC,IAAI,WAAW,KAAK,KAAK,KAAK,CAAC,WAAW,GAAG,GAAG,OAAO,IAAI,MAAM,GAAG,CAAC,CAAC,KAAK,GAAG;EAInG,IAAI,WAAW,QAAQ,IAAI;EAC3B,IAAI,sBAAqC;EACzC,OAAO,MAAM;GACX,IAAI,mBAAmB,QAAQ,MAAM,eACnC,sBAAsB,SAAS,UAAU,IAAI,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,KAAK,GAAG;GAEpE,MAAM,SAAS,QAAQ,QAAQ;GAC/B,IAAI,WAAW,UAAU,OAAO;GAChC,WAAW;EACb;CACF;AACF;;;;;;;;;AAUA,SAAgB,8BAA8B,aAAqB,KAAoC;CACrG,MAAM,aAAa,0BAA0B,WAAW;CACxD,MAAM,QAAQ,SAAgC;EAC5C,MAAM,MAAM,WAAW,IAAI;EAC3B,IAAI,CAAC,KAAK,OAAO;EACjB,KAAK,MAAM,aAAa,CAAC,UAAU,OAAO,GAAG,GAC3C,IAAI;GACF,OAAO,aAAa,OAAO;IAAC;IAAM;IAAa;IAAQ,GAAG,UAAU,GAAG;GAAK,GAAG;IAC7E,UAAU;IACV,OAAO;KAAC;KAAU;KAAQ;IAAQ;IAClC,WAAW,OAAO;GACpB,CAAC;EACH,QAAQ,CAER;EAEF,OAAO;CACT;CACA,OAAO;EACL;EACA,SAAQ,SAAQ,KAAK,IAAI,MAAM;EAC/B,OAAM,SAAQ;GACZ,MAAM,UAAU,KAAK,IAAI;GACzB,IAAI,YAAY,MAAM,MAAM,IAAI,MAAM,oBAAoB,IAAI,IAAI,MAAM;GACxE,OAAO;EACT;CACF;AACF;;;;;;;;AASA,SAAgB,2BACd,aACA,KAMA;CACA,MAAM,YAAY,8BAA8B,aAAa,GAAG;CAChE,MAAM,aAAa,0BAA0B,WAAW;CACxD,MAAM,gBAAgB,mBAAmB,WAAW;CACpD,MAAM,cAAc,QAA+B;EACjD,IAAI,QAAQ,IAAI,OAAO;EACvB,KAAK,MAAM,aAAa,CAAC,UAAU,OAAO,GAAG,GAC3C,IAAI;GACF,OAAO,aAAa,OAAO;IAAC;IAAM;IAAa;IAAY;IAAM,GAAG,UAAU,GAAG;GAAK,GAAG;IACvF,UAAU;IACV,OAAO;KAAC;KAAU;KAAQ;IAAQ;GACpC,CAAC,CAAC,CAAC,KAAK;EACV,QAAQ,CAER;EAEF,OAAO;CACT;CACA,OAAO;EACL,aAAY,SAAQ;GAClB,MAAM,MAAM,WAAW,IAAI;GAC3B,IAAI,QAAQ,MAAM,OAAO,WAAW,IAAI;GACxC,OAAO,WAAW,GAAG,MAAM;EAC7B;EACA,cAAa,SAAQ;GACnB,MAAM,MAAM,WAAW,IAAI;GAC3B,IAAI,QAAQ,MACV,IAAI;IACF,OAAO,SAAS,IAAI,CAAC,CAAC,YAAY;GACpC,QAAQ;IACN,OAAO;GACT;GAEF,OAAO,WAAW,GAAG,MAAM;EAC7B;EACA,WAAU,SAAQ;GAEhB,IADY,WAAW,IACjB,MAAM,MAAM,OAAO,aAAa,MAAM,OAAO;GACnD,OAAO,UAAU,KAAK,IAAI;EAC5B;EACA,kBAAiB,SAAQ;GACvB,MAAM,MAAM,WAAW,IAAI;GAG3B,OAAO,QAAQ,OAAO,mBAAmB,IAAI,IAAI,KAAK,eAAe,GAAG;EAC1E;CACF;AACF;;;;;AAMA,SAAS,oBAAoB,UAAkB,SAAgC,qBAAoC;CACjH,KAAK,MAAM,YAAY,mBAAmB;EACxC,MAAM,WAAW,KAAK,UAAU,QAAQ;EACxC,IAAI,OAAO,OAAO,QAAQ,GACxB,OAAO;CAEX;CACA,OAAO;AACT;;;;;;;;;AAUA,SAAgB,sBACd,aACA,gBAAgB,oBAChB,gBAAuC,qBACvC,EAAE,aAAa,UAAoC,CAAC,GAC/B;CACrB,MAAM,UAA+B,CAAC;CACtC,MAAM,OAAO,QAAQ;CAGrB,MAAM,mBAAmB,kBAAkB,KAAI,QAAQ,QAAQ,gBAAgB,gBAAgB,GAAI;CACnG,MAAM,kBAAkB,aACpB,CAAC,IACD,iBAAiB,KAAI,QAAO;EAC1B,IAAI,QAAQ,eAAe,OAAO;EAGlC,IAAI,QAAQ,sBAAsB,OAAO,aAAa,cAAc,QAAQ,OAAO,EAAE;EACrF,OAAO;CACT,CAAC;CAGL,KAAK,MAAM,YAAY,iBAAiB;EAEtC,MAAM,WAAW,oBADA,KAAK,MAAM,QACgB,CAAC;EAC7C,IAAI,UACF,IAAI;GACF,MAAM,UAAU,aAAa,UAAU,OAAO,CAAC,CAAC,KAAK;GACrD,IAAI,SAAS;IACX,QAAQ,KAAK;KAAE,MAAM;KAAU;KAAS,OAAO;IAAS,CAAC;IACzD;GACF;EACF,QAAQ,CAER;CAEJ;CAGA,KAAK,MAAM,YAAY,kBAAkB;EAEvC,MAAM,WAAW,oBADA,WAAW,KAAK,aAAa,QAAQ,IAAI,aACX,aAAa;EAC5D,IAAI,UACF,IAAI;GACF,MAAM,UAAU,cAAc,KAAK,QAAQ,CAAC,CAAC,KAAK;GAClD,IAAI,SAAS;IACX,QAAQ,KAAK;KACX,MAAM;KACN;KACA,OAAO;KACP,GAAI,cAAc,MAAM,EAAE,KAAK,cAAc,IAAI,IAAI,CAAC;IACxD,CAAC;IACD;GACF;EACF,QAAQ,CAER;CAEJ;CAEA,OAAO;AACT;AAEA,SAAgB,oCACd,aACA,gBAAgB,oBAChB,eACU;CACV,OAAO,uBAAuB,sBAAsB,aAAa,eAAe,aAAa,GAAG,CAAC,WAAW,CAAC;AAC/G;;;;;;AAOA,SAAgB,wBAAwB,YAAoB,kBAAgD;CAC1G,IAAI,CAAC,kBAAkB,QAAQ,OAAO,CAAC,UAAU;CACjD,OAAO,CAAC,GAAG,IAAI,IAAI,iBAAiB,KAAI,SAAQ,QAAQ,YAAY,IAAI,CAAC,CAAC,CAAC;AAC7E;;;;;;;;;AAUA,SAAgB,wBAAwB,EACtC,YACA,kBACA,WACA,oBAAoB,OACpB,SACA,aAAa,SAQS;CACtB,MAAM,CAAC,SAAS,GAAG,UAAU,wBAAwB,YAAY,gBAAgB;CAMjF,MAAM,UAAU,sBAAsB,SAAU,WAL1B,oBAClB,UACE,8BAA8B,SAAU,OAAO,IAC/C;EAAE,cAAc;EAAO,YAAY;CAAG,IACxC,KAAA,GACsE,EAAE,WAAW,CAAC;CACxF,IAAI,mBAAmB,OAAO;CAC9B,KAAK,MAAM,QAAQ,QACjB,QAAQ,KAAK,GAAG,sBAAsB,MAAM,WAAW,KAAA,GAAW,EAAE,YAAY,KAAK,CAAC,CAAC;CAEzF,OAAO;AACT;;;;;;AAOA,SAAgB,uBAAuB,SAA8B,OAAoC;CACvG,OAAO,QAAQ,SAAQ,WAAU;EAC/B,MAAM,OAAO,UAAU,OAAO,IAAI;EAClC,IAAI,OAAO,UAAU,WAAW,OAAO,CAAC,IAAI;EAC5C,MAAM,OAAO,MAAM,MAAK,cAAa;GACnC,MAAM,MAAM,SAAS,WAAW,IAAI;GACpC,OAAO,QAAQ,QAAQ,CAAC,IAAI,WAAW,KAAK,KAAK,KAAK,CAAC,WAAW,GAAG;EACvE,CAAC;EACD,IAAI,CAAC,MAAM,OAAO,CAAC,IAAI;EACvB,MAAM,gBAAgB,KAAK,mBAAmB,IAAI,GAAG,SAAS,MAAM,IAAI,CAAC;EACzE,OAAO,SAAS,gBAAgB,CAAC,IAAI,IAAI,CAAC,MAAM,aAAa;CAC/D,CAAC;AACH;;AAGA,MAAa,6BAA6B;;;;;;;AAQ1C,SAAgB,wBAAwB,QAAmC;CAGzE,OAAO,QAFO,OAAO,UAAU,WAAW,WAAW,UAEhC,qBADN,OAAO,MAAM,GAAG,OAAO,KAAK,WAAW,OAAO,IAAI,KAAK,OAAO,KAC5B,QAAQ,OAAO;AAClE;;;;AAKA,SAAgB,wBAAwB,SAAsC;CAC5E,IAAI,QAAQ,WAAW,GAAG,OAAO;CAEjC,MAAM,WAAW,QAAQ,IAAI,uBAAuB;CAEpD,OAAO,KAAK,2BAA2B,MAAM,SAAS,KAAK,MAAM,EAAE;AACrE"}

package/dist/agents/prompts/index.d.ts.map

@@ -1 +1 @@
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package/dist/agents/prompts/index.js

@@ -6,7 +6,7 @@ import { fastModePrompt } from "./fast.js";
 import { MC_TOOLS } from "../../tool-names.js";
 import { hasParallelKey, hasTavilyKey } from "../../tools/web-search.js";
 import "../../tools/index.js";
-import { AGENT_INSTRUCTIONS_HEADING, createGitRefInstructionReader, formatInstructionSource, loadAgentInstructions } from "./agent-instructions.js";
+import { AGENT_INSTRUCTIONS_HEADING, formatInstructionSource, loadSessionInstructions } from "./agent-instructions.js";
 import { modelSpecificPrompts } from "./model.js";
 import { buildToolGuidance } from "./tool-guidance.js";
 import { buildBasePrompt } from "@mastra/core/coding-agent";
@@ -67,14 +67,16 @@ function buildFullPromptSections(ctx) {
 	const modeSpecific = (typeof entry === "function" ? entry(ctx) : entry) ?? "";
 	const modelSpecific = ctx.modelId ? modelSpecificPrompts[ctx.modelId] ?? "" : "";
 	const configDir = ctx.state?.configDir;
-	const untrustedCheckout = ctx.state?.untrustedCheckout === true;
-	const skipGlobalInstructions = ctx.state?.skipGlobalInstructions === true;
 	const baseRef = typeof ctx.state?.baseRef === "string" ? ctx.state.baseRef : void 0;
-	const projectReader = untrustedCheckout ? baseRef ? createGitRefInstructionReader(ctx.workingDir, baseRef) : {
-		exists: () => false,
-		read: () => ""
-	} : void 0;
-	const instructionSources = ctx.workingDir ? loadAgentInstructions(ctx.workingDir, configDir, projectReader, { skipGlobal: skipGlobalInstructions }) : [];
+	const instructionRoots = Array.isArray(ctx.state?.instructionRoots) ? ctx.state.instructionRoots : void 0;
+	const instructionSources = ctx.workingDir ? loadSessionInstructions({
+		workingDir: ctx.workingDir,
+		instructionRoots,
+		configDir,
+		untrustedCheckout: ctx.state?.untrustedCheckout === true,
+		baseRef,
+		skipGlobal: ctx.state?.skipGlobalInstructions === true
+	}) : [];
 	const instructionSections = instructionSources.map((source, index) => {
 		const isFirst = index === 0;
 		const isLast = index === instructionSources.length - 1;

package/dist/agents/prompts/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/agents/prompts/index.ts"],"sourcesContent":["/**\n * Prompt system — exports the prompt builder and mode-specific prompts.\n */\n\nexport { buildModePrompt, buildModePromptFn } from './build.js';\nexport { planModePrompt } from './plan.js';\nexport { fastModePrompt } from './fast.js';\n\nimport { buildBasePrompt } from '@mastra/core/coding-agent';\nimport type { PromptContext as BasePromptContext } from '@mastra/core/coding-agent';\nimport { loadSettings, resolveLspSetting } from '../../onboarding/settings.js';\nimport { MC_TOOLS } from '../../tool-names.js';\nimport { hasParallelKey, hasTavilyKey } from '../../tools/index.js';\nimport { getLocalPlansRelativeDir } from '../../utils/plans.js';\nimport {\n  loadAgentInstructions,\n  formatInstructionSource,\n  createGitRefInstructionReader,\n  AGENT_INSTRUCTIONS_HEADING,\n} from './agent-instructions.js';\nimport { buildModePromptFn } from './build.js';\nimport { fastModePrompt } from './fast.js';\nimport { modelSpecificPrompts } from './model.js';\nimport { planModePrompt } from './plan.js';\nimport { buildToolGuidance } from './tool-guidance.js';\n\n// Extended prompt context that includes runtime information\nexport interface PromptContext extends Omit<BasePromptContext, 'toolGuidance'> {\n  modeId: string;\n  state?: any;\n  /** The subconscious knowledge tools are registered on the agent. */\n  hasSubconscious?: boolean;\n  hostInstructions?: string;\n  currentDate: string;\n  workingDir: string;\n}\n\nconst modePrompts: Record<string, string | ((ctx: PromptContext) => string)> = {\n  build: buildModePromptFn,\n  plan: planModePrompt,\n  fast: fastModePrompt,\n};\n\n/**\n * One labeled piece of the assembled system prompt.\n *\n * The system prompt is a single string by the time it reaches the model, which\n * makes it impossible to say which configuration source is responsible for\n * which share of the context window. Building it as labeled sections and\n * joining them at the end keeps that attribution available to the `/context`\n * audit while guaranteeing the audit measures the exact text that is sent —\n * a parallel \"describe the prompt\" path would drift and report numbers for a\n * prompt that is no longer assembled this way.\n */\nexport interface PromptSection {\n  /** Stable identifier, unique within a single build. */\n  id: string;\n  /** Human-readable label for display. */\n  label: string;\n  /** Optional provenance (e.g. the instruction file path). */\n  detail?: string;\n  /** The exact text contributed to the prompt. */\n  content: string;\n}\n\n/** Join prompt sections into the final system prompt string. */\nexport function joinPromptSections(sections: PromptSection[]): string {\n  return sections\n    .map(section => section.content)\n    .filter(Boolean)\n    .join('\\n\\n');\n}\n\n/**\n * Build the full system prompt for a given mode and context.\n * Combines the base prompt with mode-specific instructions.\n */\nexport function buildFullPrompt(ctx: PromptContext): string {\n  return joinPromptSections(buildFullPromptSections(ctx));\n}\n\n/**\n * Build the system prompt as labeled sections. `buildFullPrompt` is the join of\n * these, so the two can never disagree about what the model receives.\n */\nexport function buildFullPromptSections(ctx: PromptContext): PromptSection[] {\n  // Determine whether web search tools are available\n  const modelId = ctx.modelId;\n  const hasWebSearch =\n    hasParallelKey() ||\n    hasTavilyKey() ||\n    (!!modelId && (modelId.startsWith('anthropic/') || modelId.startsWith('openai/')));\n\n  // Collect per-tool deny rules so guidance omits denied tools\n  const deniedTools = new Set<string>();\n  const permRules = ctx.state?.permissionRules as { tools?: Record<string, string> } | undefined;\n  if (permRules?.tools) {\n    for (const [name, policy] of Object.entries(permRules.tools)) {\n      if (policy === 'deny') deniedTools.add(name);\n    }\n  }\n\n  // LSP is opt-in — when it is off the tool is never registered, so its\n  // guidance must not be advertised either.\n  if (resolveLspSetting(loadSettings().lsp) === false) deniedTools.add(MC_TOOLS.LSP_INSPECT);\n\n  // Build mode-aware tool guidance\n  const factoryProjectId = typeof ctx.state?.factoryProjectId === 'string' ? ctx.state.factoryProjectId : undefined;\n  const toolGuidance = buildToolGuidance(ctx.modeId, {\n    hasWebSearch,\n    hasSubconscious: ctx.hasSubconscious === true,\n    hasSubagents: ctx.hasSubagents,\n    deniedTools,\n    plansDir: getLocalPlansRelativeDir({ factoryProjectId }),\n  });\n\n  // Map new context to base context\n  const baseCtx: BasePromptContext = {\n    projectPath: ctx.workingDir || '(no workspace attached)',\n    projectName: ctx.projectName || 'unknown',\n    gitBranch: ctx.gitBranch,\n    platform: process.platform,\n    commonBinaries: ctx.commonBinaries,\n    date: ctx.currentDate,\n    mode: ctx.modeId,\n    modelId: ctx.modelId,\n    coAuthorName: ctx.coAuthorName,\n    coAuthorEmail: ctx.coAuthorEmail,\n    activePlan: ctx.state?.activePlan,\n    hasSubagents: ctx.hasSubagents !== false && !deniedTools.has('subagent'),\n    toolGuidance,\n  };\n\n  const base = buildBasePrompt(baseCtx);\n  const entry = modePrompts[ctx.modeId] || modePrompts.build;\n  const modeSpecific = (typeof entry === 'function' ? entry(ctx) : entry) ?? '';\n  const modelSpecific = ctx.modelId\n    ? (modelSpecificPrompts[ctx.modelId as keyof typeof modelSpecificPrompts] ?? '')\n    : '';\n\n  // The current task list is carried on the agent state-signal lane (see\n  // TaskStateProcessor) rather than injected into the cached system prompt. This\n  // keeps the prompt prefix stable across task updates (preserving prompt cache)\n  // while still surviving observational-memory truncation.\n\n  // Load and inject agent instructions from AGENTS.md/CLAUDE.md files.\n  // Untrusted checkouts (e.g. a PR branch under review) never read\n  // project-scope files off the working tree: their AGENTS.md is\n  // attacker-writable and would otherwise land in the system prompt as\n  // trusted configuration. When the session carries a trusted base ref, the\n  // project instructions are served from that ref instead (`git show`);\n  // without one, project-scope files are skipped entirely. Home-directory\n  // (global) instructions belong to whoever owns the machine, so hosts that\n  // run sessions for someone else opt out of them entirely.\n  const configDir = ctx.state?.configDir as string | undefined;\n  const untrustedCheckout = ctx.state?.untrustedCheckout === true;\n  const skipGlobalInstructions = ctx.state?.skipGlobalInstructions === true;\n  const baseRef = typeof ctx.state?.baseRef === 'string' ? ctx.state.baseRef : undefined;\n  const projectReader = untrustedCheckout\n    ? baseRef\n      ? createGitRefInstructionReader(ctx.workingDir, baseRef)\n      : { exists: () => false, read: () => '' }\n    : undefined;\n  // No working directory means a hosted session with no project attached:\n  // load NO instruction files at all — project locations would resolve\n  // against the server's own cwd, and global locations against the server's\n  // homedir. Neither belongs in a hosted session's prompt.\n  const instructionSources = ctx.workingDir\n    ? loadAgentInstructions(ctx.workingDir, configDir, projectReader, {\n        skipGlobal: skipGlobalInstructions,\n      })\n    : [];\n  // Emitted per source so each AGENTS.md/CLAUDE.md can be costed individually.\n  // The heading rides on the first source's section, which is exactly how\n  // `formatAgentInstructions` lays the block out, so joining the sections\n  // reproduces its output byte for byte.\n  const instructionSections: PromptSection[] = instructionSources.map((source, index) => {\n    const isFirst = index === 0;\n    const isLast = index === instructionSources.length - 1;\n    let content = formatInstructionSource(source);\n    if (isFirst) content = `${AGENT_INSTRUCTIONS_HEADING}\\n\\n${content}`;\n    // The block as a whole used to be trimmed, which only ever affected the\n    // trailing whitespace of the final source's content.\n    if (isLast) content = content.trimEnd();\n    return {\n      id: `agent-instructions:${source.path}:${index}`,\n      label: `${source.scope === 'global' ? 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Building it as labeled sections and\n * joining them at the end keeps that attribution available to the `/context`\n * audit while guaranteeing the audit measures the exact text that is sent —\n * a parallel \"describe the prompt\" path would drift and report numbers for a\n * prompt that is no longer assembled this way.\n */\nexport interface PromptSection {\n  /** Stable identifier, unique within a single build. */\n  id: string;\n  /** Human-readable label for display. */\n  label: string;\n  /** Optional provenance (e.g. the instruction file path). */\n  detail?: string;\n  /** The exact text contributed to the prompt. */\n  content: string;\n}\n\n/** Join prompt sections into the final system prompt string. */\nexport function joinPromptSections(sections: PromptSection[]): string {\n  return sections\n    .map(section => section.content)\n    .filter(Boolean)\n    .join('\\n\\n');\n}\n\n/**\n * Build the full system prompt for a given mode and context.\n * Combines the base prompt with mode-specific instructions.\n */\nexport function buildFullPrompt(ctx: PromptContext): string {\n  return joinPromptSections(buildFullPromptSections(ctx));\n}\n\n/**\n * Build the system prompt as labeled sections. `buildFullPrompt` is the join of\n * these, so the two can never disagree about what the model receives.\n */\nexport function buildFullPromptSections(ctx: PromptContext): PromptSection[] {\n  // Determine whether web search tools are available\n  const modelId = ctx.modelId;\n  const hasWebSearch =\n    hasParallelKey() ||\n    hasTavilyKey() ||\n    (!!modelId && (modelId.startsWith('anthropic/') || modelId.startsWith('openai/')));\n\n  // Collect per-tool deny rules so guidance omits denied tools\n  const deniedTools = new Set<string>();\n  const permRules = ctx.state?.permissionRules as { tools?: Record<string, string> } | undefined;\n  if (permRules?.tools) {\n    for (const [name, policy] of Object.entries(permRules.tools)) {\n      if (policy === 'deny') deniedTools.add(name);\n    }\n  }\n\n  // LSP is opt-in — when it is off the tool is never registered, so its\n  // guidance must not be advertised either.\n  if (resolveLspSetting(loadSettings().lsp) === false) deniedTools.add(MC_TOOLS.LSP_INSPECT);\n\n  // Build mode-aware tool guidance\n  const factoryProjectId = typeof ctx.state?.factoryProjectId === 'string' ? ctx.state.factoryProjectId : undefined;\n  const toolGuidance = buildToolGuidance(ctx.modeId, {\n    hasWebSearch,\n    hasSubconscious: ctx.hasSubconscious === true,\n    hasSubagents: ctx.hasSubagents,\n    deniedTools,\n    plansDir: getLocalPlansRelativeDir({ factoryProjectId }),\n  });\n\n  // Map new context to base context\n  const baseCtx: BasePromptContext = {\n    projectPath: ctx.workingDir || '(no workspace attached)',\n    projectName: ctx.projectName || 'unknown',\n    gitBranch: ctx.gitBranch,\n    platform: process.platform,\n    commonBinaries: ctx.commonBinaries,\n    date: ctx.currentDate,\n    mode: ctx.modeId,\n    modelId: ctx.modelId,\n    coAuthorName: ctx.coAuthorName,\n    coAuthorEmail: ctx.coAuthorEmail,\n    activePlan: ctx.state?.activePlan,\n    hasSubagents: ctx.hasSubagents !== false && !deniedTools.has('subagent'),\n    toolGuidance,\n  };\n\n  const base = buildBasePrompt(baseCtx);\n  const entry = modePrompts[ctx.modeId] || modePrompts.build;\n  const modeSpecific = (typeof entry === 'function' ? entry(ctx) : entry) ?? 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package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,oBAAoB,CAAC;AAChD,OAAO,EAAE,eAAe,EAAkC,MAAM,+BAA+B,CAAC;AAChG,OAAO,KAAK,EACV,eAAe,EACf,qBAAqB,EAErB,mBAAmB,EACnB,uBAAuB,EAEvB,OAAO,EACR,MAAM,+BAA+B,CAAC;AAEvC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAClD,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAGnD,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAU7C,OAAO,KAAK,EAAE,cAAc,EAAa,MAAM,yBAAyB,CAAC;AACzE,OAAO,EAAE,cAAc,EAAE,MAAM,8BAA8B,CAAC;AAE9D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAEpD,OAAO,EAAE,oBAAoB,EAAE,MAAM,sBAAsB,CAAC;AAE5D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAGxD,OAAO,EAAE,aAAa,EAAE,MAAM,wBAAwB,CAAC;AAEvD,OAAO,EACL,aAAa,EAId,MAAM,uBAAuB,CAAC;AAK/B,OAAO,KAAK,EAAE,qCAAqC,EAAE,MAAM,wCAAwC,CAAC;AAMpG,OAAO,EAA+D,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAe9G,OAAO,KAAK,EAAE,gBAAgB,EAAE,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AASpE,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAIhD,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAG/C,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAGtD,OAAO,EACL,YAAY,EAKb,MAAM,0BAA0B,CAAC;AAElC,OAAO,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAWrD,OAAO,EAML,eAAe,EAChB,MAAM,sBAAsB,CAAC;AAE9B,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAanD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AAKxD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,gCAAgC,CAAC;AA0IzE,MAAM,WAAW,gBAAgB;IAC/B,sEAAsE;IACtE,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,wEAAwE;IACxE,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,sFAAsF;IACtF,KAAK,CAAC,EAAE,mBAAmB,EAAE,CAAC;IAC9B,sGAAsG;IACtG,SAAS,CAAC,EAAE,uBAAuB,EAAE,CAAC;IACtC,uIAAuI;IACvI,UAAU,CAAC,EACP,MAAM,CAAC,MAAM,EAAE,QAAQ,GAAG,SAAS,CAAC,GACpC,CAAC,CAAC,GAAG,EAAE;QACL,cAAc,EAAE,cAAc,CAAC;KAChC,KAAK,MAAM,CAAC,MAAM,EAAE,QAAQ,GAAG,SAAS,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,QAAQ,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;IAChG,oGAAoG;IACpG,gBAAgB,CAAC,EAAE,gBAAgB,CAAC;IACpC;;;;OAIG;IACH,eAAe,CAAC,EACZ,cAAc,EAAE,GAChB,CAAC,CAAC,IAAI,EAAE;QAAE,cAAc,EAAE,cAAc,CAAA;KAAE,KAAK,cAAc,EAAE,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC,CAAC,CAAC;IACjG,2EAA2E;IAC3E,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;IACzB;;;;OAIG;IACH,OAAO,CAAC,EAAE,aAAa,GAAG,oBAAoB,CAAC;IAC/C,mGAAmG;IACnG,cAAc,CAAC,EAAE,QAAQ,GAAG,IAAI,CAAC;IACjC,kGAAkG;IAClG,MAAM,CAAC,EAAE,YAAY,CAAC;IACtB,mGAAmG;IACnG,SAAS,CAAC,EAAE;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,SAAS,CAAA;KAAE,CAAC;IACjD,uGAAuG;IACvG,OAAO,CAAC,EAAE,QAAQ,GAAG,UAAU,CAAC;IAChC,oEAAoE;IACpE,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,0DAA0D;IAC1D,YAAY,CAAC,EAAE,OAAO,CAAC,eAAe,CAAC,CAAC;IACxC,uFAAuF;IACvF,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,wEAAwE;IACxE,gBAAgB,CAAC,EACb,MAAM,GACN,CAAC,CAAC,GAAG,EAAE;QAAE,cAAc,EAAE,cAAc,CAAA;KAAE,KAAK,MAAM,GAAG,SAAS,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CAAC,CAAC;IACpG,gHAAgH;IAChH,QAAQ,CAAC,EAAE;QAAE,IAAI,CAAC,EAAE,MAAM,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;IAC7C,6FAA6F;IAC7F,WAAW,CAAC,EAAE,qBAAqB,CAAC,eAAe,CAAC,CAAC,aAAa,CAAC,CAAC;IACpE,wDAAwD;IACxD,gBAAgB,CAAC,EAAE,eAAe,EAAE,CAAC;IACrC,kGAAkG;IAClG,SAAS,CAAC,EAAE,qBAAqB,CAAC,eAAe,CAAC,CAAC,WAAW,CAAC,CAAC;IAChE,oMAAoM;IACpM,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,+FAA+F;IAC/F,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;IAC7C,mDAAmD;IACnD,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,oCAAoC;IACpC,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,0FAA0F;IAC1F,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,uDAAuD;IACvD,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,4GAA4G;IAC5G,oBAAoB,CAAC,EAAE,OAAO,CAAC;IAC/B;;;;;;OAMG;IACH,qBAAqB,CAAC,EAAE,OAAO,CAAC;IAChC,4EAA4E;IAC5E,aAAa,CAAC,EAAE,aAAa,CAAC;IAC9B;;;;;;;OAOG;IACH,MAAM,CAAC,EAAE,qBAAqB,CAAC,eAAe,CAAC,CAAC,QAAQ,CAAC,GAAG,KAAK,CAAC;IAClE,wGAAwG;IACxG,OAAO,CAAC,EAAE,qBAAqB,CAAC,eAAe,CAAC,CAAC,SAAS,CAAC,CAAC;IAC5D,6FAA6F;IAC7F,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,4FAA4F;IAC5F,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,yGAAyG;IACzG,kBAAkB,CAAC,EAAE,OAAO,CAAC;IAC7B,oDAAoD;IACpD,gBAAgB,CAAC,EAAE,qCAAqC,CAAC;IACzD;;;;;;OAMG;IACH,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAC5B;;;;;OAKG;IACH,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB;;;;;;;OAOG;IACH,yBAAyB,CAAC,EAAE,CAAC,IAAI,EAAE;QACjC,cAAc,EAAE,cAAc,CAAC;QAC/B,UAAU,EAAE,MAAM,CAAC;QACnB,QAAQ,EAAE,MAAM,CAAC;KAClB,KAAK,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CAC5B;AAED,wBAAgB,iBAAiB,gBAQhC;AAED;;;;;;;;;GASG;AACH,wBAAgB,+BAA+B,CAC7C,QAAQ,EAAE,UAAU,CAAC,OAAO,YAAY,CAAC,EACzC,WAAW,EAAE,WAAW,EACxB,UAAU,EAAE,MAAM,EAClB,GAAG,GAAE,MAAM,CAAC,UAAwB,GACnC;IAAE,WAAW,EAAE,MAAM,CAAC;IAAC,SAAS,CAAC,EAAE,MAAM,CAAA;CAAE,GAAG,SAAS,CAWzD;AA+DD,wBAAsB,+BAA+B,CAAC,MAAM,CAAC,EAAE,gBAAgB;;;;wCA6qCvC,OAAO,CAAC,eAAe,CAAC,iBAAiB,MAAM;;;;;;;;;;;;;;;;;;;;;;;;;;;;gCAyCvD,OAAO,CAAC,eAAe,CAAC;IAGpD;;;;;;OAMG;;IAMH;;;;;;;OAOG;;IAMH,uEAAuE;;IAEvE;;;;;OAKG;;IAIH;;;;;OAKG;;IAOH,4FAA4F;;IAK5F;;;;;;;;;;;;;;;OAeG;;GAUN;AAED;;;;GAIG;AACH,MAAM,MAAM,yBAAyB,GAAG,OAAO,CAAC,UAAU,CAAC,OAAO,+BAA+B,CAAC,CAAC,CAAC;AAEpG;;;;;;;GAOG;AACH,wBAAsB,mBAAmB,CACvC,IAAI,EAAE,IAAI,CAAC,yBAAyB,EAAE,aAAa,GAAG,eAAe,GAAG,kBAAkB,CAAC,EAC3F,OAAO,EAAE,OAAO,CAAC,eAAe,CAAC,GAChC,OAAO,CAAC,IAAI,CAAC,CAgDf;AAED;;;;GAIG;AACH,wBAAsB,wBAAwB,CAAC,MAAM,CAAC,EAAE,gBAAgB;;;;;;;wCArMhC,OAAO,CAAC,eAAe,CAAC,iBAAiB,MAAM;;;;;;;;;;;;;;;;;;;;;;;;;;;;gCAyCvD,OAAO,CAAC,eAAe,CAAC;IAGpD;;;;;;OAMG;;IAMH;;;;;;;OAOG;;IAMH,uEAAuE;;IAEvE;;;;;OAKG;;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package/dist/index.js

@@ -12,7 +12,7 @@ import { createBackgroundCompletionEvents } from "./agents/background-completion
 import { createBackgroundCompletionCallbacks } from "./agents/background-completion.js";
 import { hasCredentialStoreProvider } from "./agents/credential-resolver.js";
 import { getDynamicWorkspace, getGoalJudgeTools } from "./agents/workspace.js";
-import { createGitRefInstructionReader, createGitRefReminderReader, getStaticallyLoadedInstructionPaths } from "./agents/prompts/agent-instructions.js";
+import { createGitRefReminderReader, instructionSourcePaths, loadSessionInstructions, sessionInstructionRoots } from "./agents/prompts/agent-instructions.js";
 import { getDynamicInstructions } from "./agents/instructions.js";
 import { LOCAL_KNOWLEDGE_ORG_ID } from "./knowledge-scope.js";
 import { createAmazonBedrockGateway } from "./providers/amazon-bedrock-gateway.js";
@@ -78,7 +78,7 @@ import { defaultNotificationDeliveryDecision } from "@mastra/core/notifications"
 import { AgentsMDInjector, CyberRefusalHandler, ProviderHistoryCompat, StreamErrorRetryProcessor, createBackgroundWorkSignalProcessor, isBadRequestError } from "@mastra/core/processors";
 import { RequestContext } from "@mastra/core/request-context";
 import { TaskSignalProvider } from "@mastra/core/signals";
-import { InMemoryHarness, MastraCompositeStore } from "@mastra/core/storage";
+import { MastraCompositeStore } from "@mastra/core/storage";
 import { DEFAULT_GOAL_JUDGE_PROMPT } from "@mastra/core/tools";
 import { DuckDBStore } from "@mastra/duckdb";
 import { GithubSignals } from "@mastra/github-signals";
@@ -329,14 +329,12 @@ async function createMastraCodeAgentController(config) {
 		if (/lock|locked|busy/i.test(message)) observabilityWarning = "Observability unavailable — another MastraCode instance holds the database lock. Traces, scores, and feedback will not be recorded in this session.";
 		else observabilityWarning = `Observability unavailable — DuckDB initialization failed: ${message}`;
 	}
-	const harnessStorage = new InMemoryHarness();
 	const scoresStorage = new DiscardingScoresStorage();
 	const storage = new MastraCompositeStore({
 		id: "mastra-code-storage",
 		default: storageResult.storage,
 		domains: {
 			observability: observabilityDomain ?? false,
-			harness: harnessStorage,
 			scores: scoresStorage
 		}
 	});
@@ -596,12 +594,33 @@ async function createMastraCodeAgentController(config) {
 			getReader: ({ requestContext }) => {
 				const state = getInjectorSessionState(requestContext);
 				if (state?.untrustedCheckout !== true || typeof state?.baseRef !== "string") return void 0;
-				return createGitRefReminderReader(state?.projectPath ?? project.rootPath, state.baseRef);
+				const projectPath = state?.projectPath ?? project.rootPath;
+				const [primary] = sessionInstructionRoots(projectPath, state.instructionRoots);
+				const reader = createGitRefReminderReader(primary, state.baseRef);
+				if (primary === projectPath) return reader;
+				const outsidePrimary = (filePath) => {
+					const inProject = path.relative(projectPath, filePath);
+					const inPrimary = path.relative(primary, filePath);
+					const under = (rel) => rel !== ".." && !rel.startsWith(`..${path.sep}`) && !path.isAbsolute(rel);
+					return under(inProject) && !under(inPrimary);
+				};
+				return {
+					...reader,
+					pathExists: (filePath) => !outsidePrimary(filePath) && reader.pathExists(filePath),
+					isDirectory: (filePath) => !outsidePrimary(filePath) && reader.isDirectory(filePath)
+				};
 			},
 			getIgnoredInstructionPaths: ({ requestContext }) => {
 				const state = getInjectorSessionState(requestContext);
 				const projectPath = state?.projectPath ?? project.rootPath;
-				return getStaticallyLoadedInstructionPaths(projectPath, void 0, state?.untrustedCheckout === true && typeof state?.baseRef === "string" ? createGitRefInstructionReader(projectPath, state.baseRef) : void 0);
+				const untrusted = state?.untrustedCheckout === true && typeof state?.baseRef === "string";
+				const roots = sessionInstructionRoots(projectPath, state?.instructionRoots);
+				return instructionSourcePaths(loadSessionInstructions({
+					workingDir: projectPath,
+					instructionRoots: state?.instructionRoots,
+					untrustedCheckout: untrusted,
+					baseRef: untrusted ? state?.baseRef : void 0
+				}), roots);
 			}
 		})
 	];