@mark1russell7/rigor-statistics 0.1.17 → 0.1.19

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package/README.md CHANGED
@@ -111,6 +111,8 @@ The default expansion has one product for each pair of levels of two dimensions.
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  | `bootstrapMedian`, `bootstrapClusters` | The interval of the median, and a bootstrap that draws whole clusters (boards, seeds, sites). |
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  | `bootstrapTwo(a, b, statistic, options)` | A bootstrap interval of a statistic of two independent samples, for example two arms of a benchmark. Each run draws all of `a`, then all of `b`. |
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  | `bootstrapMedianRatio(numerator, denominator, options)` | The interval of `median(numerator) / median(denominator)`. It is the uncertainty of the ratio, not the spread of the samples. |
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+ | `sampleTotalInterval(values, { population, scale })` | The interval of the total of a population from a uniform sample of `m` of its `n` items without replacement. The deviations get the finite population correction `sqrt(1 - m / n)`. `scale` is `n / m` by default. When `m` is `n`, the interval is the estimate. For a small `m`, the interval is too narrow: at `m = 8` of `n = 40`, the coverage is 0.865. For a total over pairs, use `uStatisticInterval`. |
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+ | `uStatisticInterval(totals, { order, population, method, level, range })` | The interval of a total over all sets of `r` units of a population, for example the crossings of all pairs. The input is the total of each unit of a sample without replacement. The estimate is `S * C(n, r) / C(m, r)`. The method `"conservative"` uses the Hoeffding bound of a U-statistic with `floor(m / r)` draws and the `range` of the kernel. It holds at each `m`. The method `"tight"` uses the jackknife variance times `1 - m / n`, and the t quantile with `m - 1` degrees of freedom. This variance is exact for a linear kernel and larger for others. When all the totals are equal, the method `"tight"` uses the method `"conservative"`, or it throws without `range`. The result gives the `method` that it used. At `m = 8`, the coverage of `"tight"` is 0.885 to 0.915 for a skewed kernel. The method `"auto"` needs `range`. It uses `"tight"` from `m = U_STATISTIC_TIGHT_MIN_SAMPLE`. No measured `m` gets 0.95 in each cell, so this constant is infinite. |
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  | `leastSquares(x, y, { intercept })` | The ordinary least-squares fit of `y` on the rows of `x`, with a QR decomposition. It gives the coefficients, `residualSd`, `r2`, `n` and `k`. A singular design gives NaN coefficients. |
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  | `bootstrapLeastSquares(x, y, options)` | One bootstrap interval for each coefficient of `leastSquares`, from the same draws of whole rows. A singular draw does not count. |
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  | `ridgeSolve(gram, moment, lambda, { free })` | The ridge coefficients from the normal equations `X'X` and `X'y`, with a Cholesky factorization. The `free` coefficients have no penalty. A matrix that is not positive definite gives NaN coefficients. |
package/build/index.d.ts CHANGED
@@ -154,6 +154,27 @@ export declare function bootstrapMedian(values: readonly number[], options?: Boo
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  * are in the order of their first row.
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  */
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  export declare function bootstrapClusters<T>(rows: readonly T[], cluster: (row: T) => string, statistic: (rows: readonly T[]) => number, options?: BootstrapOptions): Interval;
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+ interface SampleTotalOptions extends BootstrapOptions {
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+ /** The number of items in the whole population, `n`. It is a whole number, and it is not less than the sample. */
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+ readonly population: number;
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+ /** The factor from the sum of the sample to the total of the population. The default is `population / values.length`. */
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+ readonly scale?: number;
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+ }
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+ /**
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+ * A bootstrap interval of the total of a population from a uniform sample of `m` of its `n` items, drawn without
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+ * replacement. The estimate is `scale * sum(values)`. Each run draws `m` values with replacement, as `bootstrap`
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+ * does. The deviation of each run from the sum of the sample gets the factor `scale * sqrt(1 - m / n)`, the finite
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+ * population correction. When `m` is `n`, the interval is the estimate.
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+ *
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+ * The sample has 2 values or more, and each value is finite. With the same seed, the result is equal to the
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+ * `bootstrap` of the same statistic, to the bit.
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+ *
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+ * The interval is narrow for a small sample. The draws give the variance of the sample with the divisor `m`, not
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+ * `m - 1`, so the width gets the factor `sqrt((m - 1) / m)`. The skew of the values adds to the miss. In the tests,
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+ * 400 samples of `m = 8` of `n = 40` hold the total 346 times (Wilson 0.828 to 0.895). At `m = 100` of `n = 200`,
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+ * the coverage agrees with 95%. For a total over the pairs of the items, use `uStatisticInterval`.
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+ */
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+ export declare function sampleTotalInterval(values: readonly number[], options: SampleTotalOptions): Interval;
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  /** The smooth laws that `smoothLawScores` compares. Each law has 2 fitted numbers. */
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  type SmoothLaw = "uniform" | "normal" | "exponential" | "log-normal" | "pareto";
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  /** The value of one law at its fit. */
@@ -1069,5 +1090,124 @@ interface OptionFloorOptions {
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  * @returns A whole number of 2 or more.
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  */
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  export declare function optionFloor(options: OptionFloorOptions): number;
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- export type { BootstrapOptions, CalibrationLevel, CategoricalDimension, CompareOptions, Comparison, ContinuousDimension, Corrected, CountInterval, Effect, Forecast, Interval, Kappa, LeastSquaresFit, LeastSquaresOptions, MedianInterval, ModeOptions, NoiseOptions, NoiseState, NoiseVerdict, OptionFloorOptions, OrdinalDimension, ParsedResponseRecord, PermutationOptions, PermutationResult, Proportion, QuantileInterval, QuantileMethod, ResponseAbsentPoint, ResponseBand, ResponseCurvePoint, ResponseData, ResponseDimension, ResponseDimensionBase, ResponseFactor, ResponseFault, ResponseFitOptions, ResponseFold, ResponseFoldError, ResponseHeldOutError, ResponseInputValue, ResponseMeasure, ResponseModel, ResponseModelBase, ResponsePoint, ResponseReason, ResponseRecord, ResponseSlice, ResponseSliceOptions, ResponseSlicePoint, ResponseSurface, ResponseSurfaceAbsentPoint, ResponseSurfaceOptions, ResponseSurfacePoint, ResponseTableCell, ResponseValue, ResponseViewOptions, ResponseWhen, RidgeInput, RidgeInputBase, RidgeLevelInput, RidgeNumberInput, RidgeOptions, RidgeRankInput, RidgeResponseModel, RidgeTerm, SideP, SmoothLaw, SmoothLawScore, Summary, TableResponseModel, TwoSamplePermutationOptions, TwoSamplePermutationResult };
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+ /** The methods of `uStatisticInterval`. The method `"auto"` selects one of the other two for each sample. */
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+ type UStatisticMethod = "conservative" | "tight" | "auto";
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+ /**
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+ * The smallest sample `m` at which the method `"auto"` uses the method `"tight"`. The value comes from the pinned
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+ * counts of the tests. No measured `m` obeys the rule, so the value is infinite. The TSDoc of `uStatisticInterval`
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+ * gives the rule and the counts.
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+ */
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+ export declare const U_STATISTIC_TIGHT_MIN_SAMPLE: number;
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+ /** The options of `uStatisticInterval`. */
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+ interface UStatisticOptions {
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+ /** The order `r` of the kernel: the number of units in each set. It is a whole number of 1 or more. */
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+ readonly order: number;
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+ /** The number of units in the whole population, `n`. It is a whole number, and it is not less than the sample. */
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+ readonly population: number;
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+ /** The method of the interval. The methods `"conservative"` and `"auto"` need `range`. */
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+ readonly method: UStatisticMethod;
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+ /** The level of the interval. The default is 0.95. */
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+ readonly level?: number;
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+ /** The smallest and the largest value of the kernel. With it, the interval stays in this range. */
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+ readonly range?: readonly [low: number, high: number];
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+ }
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+ /** The mean of the kernel over all the sets of `r` units of the population, with its interval. */
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+ interface UStatisticMean {
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+ /** The U-statistic: the mean of the kernel over the sets of `r` units of the sample. */
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+ readonly estimate: number;
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+ readonly low: number;
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+ readonly high: number;
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+ }
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+ /** The result of `uStatisticInterval`. The total is the mean of the kernel times `subsets`. */
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+ interface UStatisticInterval {
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+ /** The estimate of the total of the population: `S * C(n, r) / C(m, r)`, with `S` the total of the sample. */
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+ readonly estimate: number;
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+ readonly low: number;
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+ readonly high: number;
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+ readonly level: number;
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+ /** The method that made the interval. It is not `requested` after a fallback or a choice of the method `"auto"`. */
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+ readonly method: "conservative" | "tight";
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+ /** The method of the options. */
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+ readonly requested: UStatisticMethod;
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+ /** The mean of the kernel, with its interval. */
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+ readonly mean: UStatisticMean;
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+ /** The number of sets of `r` units in the population, `C(n, r)`. */
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+ readonly subsets: number;
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+ /** The standard error of the total. Only an interval of the method `"tight"` has it. */
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+ readonly standardError?: number;
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+ /** The degrees of freedom of the t quantile, `m - 1`. Only an interval of the method `"tight"` has it. */
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+ readonly df?: number;
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+ }
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+ /**
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+ * This function gives the interval of a total over all the sets of `r` units of a population. The data is a uniform
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+ * sample of `m` of the `n` units, without replacement. An example is the count of crossings between all pairs of
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+ * routes. The input is the total of each sampled unit: the sum of the kernel over the sets of `r` sampled units
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+ * that hold the unit. Thus the sum of the totals is `r * S`, with `S` the total of the sample. The kernel is
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+ * symmetric.
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+ *
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+ * The estimate is `S * C(n, r) / C(m, r)`. It is the U-statistic `U = S / C(m, r)` times `C(n, r)`. At `r = 1`,
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+ * the estimate is `n / m` times the sum of the sample. When `m` is `n`, the interval is the estimate.
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+ *
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+ * The method `"conservative"` uses the inequality of Hoeffding (1963) for U-statistics, with `k = floor(m / r)`. The
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+ * half width of the mean is `(b - a) * sqrt(ln(2 / (1 - level)) / (2 k))`, with `[a, b]` the range of the kernel.
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+ * The bound is also true for a sample without replacement (Ai, Kuželka and Wang 2022, Blanc 2023 Theorem 6).
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+ * Thus the interval holds at each `m`. It is wide at a small `m`.
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+ *
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+ * The method `"tight"` uses the jackknife variance of `U`, from the totals only, times the finite population
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+ * correction `1 - m / n`. The interval is `U` plus or minus the t quantile with `m - 1` degrees of freedom, times
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+ * the standard error.
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+ *
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+ * The correction comes from the inclusion probabilities of a sample without replacement. The variance of the linear
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+ * part of `U` (its Hájek projection) gets exactly the factor `1 - m / n`. The variance of the remainder gets a
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+ * smaller factor, near `(1 - m / n)^2`, relative to an independent sample. For `r = 2` this factor is
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+ * `(n - m)(n - m - 1) / ((n - 2)(n - 3))`. Thus this estimate of the variance is exact for a linear kernel, and
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+ * larger than the variance for other kernels. The tests read the two facts over all samples of small populations.
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+ *
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+ * The method `"tight"` does not give an interval of width 0 when `m` is less than `n`. When all the totals are
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+ * equal, the jackknife variance is 0. Then the function uses the method `"conservative"` for the sample, and the
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+ * result has `method: "conservative"`. Without `range`, the function throws a `RangeError` for this sample.
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+ *
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+ * The method `"tight"` has no proof of its coverage. The tests use 200 samples of made-up populations at the level
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+ * 0.95. The table gives the hits of 200 for each population `n` and sample `m`. Each count includes the fallback.
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+ *
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+ * | n / m | sparse | crossings | skewed |
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+ * | --- | --- | --- | --- |
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+ * | 40 / 8 | 200 | 200 | 183 |
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+ * | 40 / 10 | 200 | 200 | 187 |
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+ * | 40 / 12 | 200 | 183 | 189 |
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+ * | 40 / 20 | 180 | 183 | 188 |
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+ * | 40 / 36 | 192 | 189 | 193 |
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+ * | 60 / 8 | 200 | 200 | 181 |
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+ * | 60 / 10 | 200 | 200 | 180 |
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+ * | 60 / 12 | 200 | 195 | 186 |
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+ * | 60 / 20 | 184 | 190 | 183 |
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+ * | 60 / 40 | 186 | 193 | 180 |
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+ * | 120 / 8 | 200 | 200 | 177 |
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+ * | 120 / 10 | 200 | 192 | 175 |
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+ * | 120 / 12 | 200 | 189 | 178 |
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+ * | 120 / 20 | 191 | 193 | 182 |
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+ * | 120 / 40 | 194 | 192 | 185 |
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+ * | 120 / 60 | 195 | 189 | 185 |
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+ * | 120 / 108 | 187 | 185 | 190 |
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+ *
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+ * The sparse kernel holds 2% to 3% of the pairs. The skewed kernel has a few large values. At `m = 8`, the skewed
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+ * kernel gets 177 to 183 of 200, a coverage of 0.885 to 0.915. No row has 190 or more in each kernel.
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+ *
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+ * The method `"auto"` needs `range`. It uses the method `"tight"` when `m` is `U_STATISTIC_TIGHT_MIN_SAMPLE` or more
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+ * and the variance is more than 0. Otherwise, it uses the method `"conservative"`.
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+ *
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+ * The rule for `U_STATISTIC_TIGHT_MIN_SAMPLE` is the smallest `m` of the table with 190 of 200 or more in each cell.
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+ * No `m` of the table obeys the rule. The last `m` with a count below 190 is 108, the largest `m` of the table. The
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+ * table has no larger `m`, so the constant is infinite. Thus the method `"auto"` uses the method `"conservative"` at
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+ * each `m` less than `n`.
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+ *
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+ * With `range`, the interval of the mean stays in `[a, b]`, and each total is in the range of a sum of
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+ * `C(m - 1, r - 1)` kernel values.
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+ *
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+ * @param totals - The total of each unit of the sample. The sample has more units than `r`.
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+ * @param options - The order, the population, the method, the level and the range of the kernel.
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+ * @returns The estimate and the interval of the total, and of the mean of the kernel.
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+ */
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+ export declare function uStatisticInterval(totals: readonly number[], options: UStatisticOptions): UStatisticInterval;
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+ export type { BootstrapOptions, CalibrationLevel, CategoricalDimension, CompareOptions, Comparison, ContinuousDimension, Corrected, CountInterval, Effect, Forecast, Interval, Kappa, LeastSquaresFit, LeastSquaresOptions, MedianInterval, ModeOptions, NoiseOptions, NoiseState, NoiseVerdict, OptionFloorOptions, OrdinalDimension, ParsedResponseRecord, PermutationOptions, PermutationResult, Proportion, QuantileInterval, QuantileMethod, ResponseAbsentPoint, ResponseBand, ResponseCurvePoint, ResponseData, ResponseDimension, ResponseDimensionBase, ResponseFactor, ResponseFault, ResponseFitOptions, ResponseFold, ResponseFoldError, ResponseHeldOutError, ResponseInputValue, ResponseMeasure, ResponseModel, ResponseModelBase, ResponsePoint, ResponseReason, ResponseRecord, ResponseSlice, ResponseSliceOptions, ResponseSlicePoint, ResponseSurface, ResponseSurfaceAbsentPoint, ResponseSurfaceOptions, ResponseSurfacePoint, ResponseTableCell, ResponseValue, ResponseViewOptions, ResponseWhen, RidgeInput, RidgeInputBase, RidgeLevelInput, RidgeNumberInput, RidgeOptions, RidgeRankInput, RidgeResponseModel, RidgeTerm, SampleTotalOptions, SideP, SmoothLaw, SmoothLawScore, Summary, TableResponseModel, TwoSamplePermutationOptions, TwoSamplePermutationResult, UStatisticInterval, UStatisticMean, UStatisticMethod, UStatisticOptions };
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  //# sourceMappingURL=index.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.d.ts","names":[],"sources":["../src/describe.ts","../src/regression.ts","../src/bootstrap.ts","../src/distribution.ts","../src/ridge.ts","../src/response.ts","../src/response-parse.ts","../src/response-fit.ts","../src/tests.ts","../src/agreement.ts","../src/rank.ts","../src/discrete.ts","../src/compare.ts","../src/power.ts"],"mappings":";;;;;;KAOY;;wBAmBI,OAAO;wBAIP,KAAK;;;;;wBAgBL,GAAG;;;;;;;wBAgBH,eAAe,iCAAiC,WAAW,SAAQ;;wBAkBnE,SAAS,2BAA2B,WAAW,SAAQ;;;;;wBASvD,OAAO;;UAQN;WACN;WACA;;WAEA;WACA;;WAEA;WACA;;WAEA;WACA;;WAEA;;wBAGK,UAAU,4BAA4B;;;;;;UC3GrC;;WAEN;;UAGM;;WAEN;;WAEA;;;;;WAKA;;WAEA;;WAEA;;;;;;;;;;;wBAkBK,aAAa,mCAAmC,sBAAsB,UAAS,sBAA2B;UC/BzG;;WAEN;;WAEA;;WAEA;;WAEA,SAAS;;;;;;WAMT;;;;;WAKA;;;UAIM;;WAEN;;WAEA;;WAEA;;UAGM,iBAAiB,QAAQ;;WAE/B;WACA;WACA;WACA;WACA;;WAEA;;WAEA;;;;;;wBAOK,UAAU,GAAG,eAAe,KAAK,YAAY,iBAAiB,gBAAgB,UAAS,mBAAwB;;;;;;;;wBAsB/G,aAAa,GAAG,GAC9B,YAAY,KACZ,YAAY,KACZ,YAAY,YAAY,KAAK,YAAY,gBACzC,UAAS,mBACR;;;;;;wBAwBa,qBAAqB,8BAA8B,gCAAgC,UAAS,mBAAwB;;;;;;;wBAUpH,sBACd,mCACA,sBACA,UAAS,mBAAmB,sBAC3B;;wBAoGa,gBAAgB,2BAA2B,UAAS,mBAAwB;;;;;;wBAS5E,kBAAkB,GAChC,eAAe,KACf,UAAU,KAAK,cACf,YAAY,eAAe,gBAC3B,UAAS,mBACR;;KCxOS;;UAGK;WACN,KAAK;;WAEL;;;UAIM;;;;;WAKN;;WAEA;;;;;;;;;;;;;;;;;;;wBA0MK,UAAU,2BAA2B,UAAS;;;;;;;;wBAqB9C,gBAAgB,qCAAqC;;;;;;wBAwBrD,cAAc,4BAA4B;;;;;;;UCxQzC;;WAEN;;;;;;;;;;;;wBAoBK,WAAW,MAAM,mBAAmB,QAAQ,mBAAmB,gBAAgB,UAAS;;qBCd3F;;KAGD;;KAGA,qBAAqB;;UAGhB;;WAEN;WACA,iBAAiB;;;UAIX;;WAEN;;WAEA;;WAEA;;WAEA,OAAO;;;UAID,4BAA4B;WAClC;;WAEA;;WAEA;;;UAIM,yBAAyB;WAC/B;WACA;;WAEA;;;UAIM,6BAA6B;WACnC;WACA;;;KAIC,oBAAoB,sBAAsB,mBAAmB;;UAGxD;;WAEN;WACA;;WAEA;;WAEA;;;;;WAKA;;;UAIM;;WAEN;;WAEA;;;UAIM;WACN;;WAEA,QAAQ,SAAS,eAAe;;WAEhC,UAAU,SAAS;;WAEnB;;WAEA,SAAS,SAAS;;;KAIjB;WAA4B;WAA4B;;WAA6B;WAA4B,OAAO;;;UAGnH;WACN;;WAEA;;;UAIM,yBAAyB;WAC/B;WACA;WACA;WACA;;;UAIM,uBAAuB;WAC7B;WACA;WACA;WACA;;;UAIM,wBAAwB;WAC9B;WACA;;;KAIC,aAAa,mBAAmB,iBAAiB;;UAG5C;WACN,kBAAkB;WAClB;;;UAIM;;WAEN;;WAEA;;WAEA;;;UAIM,2BAA2B;WACjC;;WAEA;WACA,iBAAiB;WACjB;WACA,gBAAgB;;;UAIV;;WAEN,aAAa;;WAEb;;WAEA;;;UAIM,2BAA2B;WACjC;WACA;;WAEA;WACA,gBAAgB;;WAEhB;;;KAIC,gBAAgB,qBAAqB;;UAGhC;;WAEN;;WAEA;;WAEA;;WAEA;;;UAIM;;WAEN;;WAEA,QAAQ,SAAS,eAAe;;;;;WAKhC,cAAc,SAAS,eAAe,SAAS;;;UAIzC;WACN,eAAe;WACf;WACA,qBAAqB;WACrB,mBAAmB;;WAEnB,mBAAmB;WACnB,iBAAiB;;;UAIX,uBAAuB;WAC7B,iBAAiB;WACjB,gBAAgB;;;UAIV;;WAEN;;WAEA;;WAEA;;WAEA;;WAEA;;WAEA;;;UAIM;;WAEN,OAAO,SAAS,eAAe;;WAE/B;;;;;WAKA;;WAEA;;;UAIM,6BAA6B;;WAEnC;;;UAIM,+BAA+B;;WAErC;;;;;;UAOM;WACN;WACA;WACA;;;;;;;WAOA;;WAEA;;;UAIM,2BAA2B;;WAEjC,IAAI;;;UAIE;WACN;;WAEA,IAAI;WACJ;WACA;;;UAIM;WACN;;WAEA,IAAI;;WAEJ;WACA;;;UAIM;WACN;WACA;;WAEA,MAAM,SAAS,eAAe;WAC9B,gBAAgB;WAChB,iBAAiB;;WAEjB,iBAAiB;WACjB,OAAO;;WAEP;;;UAIM;WACN;;WAEA,cAAc,eAAe;WAC7B;WACA;;;UAIM;WACN;;WAEA,cAAc,eAAe;;WAE7B;WACA;;;UAIM;WACN;WACA;;WAEA,MAAM,SAAS,eAAe;WAC9B,YAAY;WACZ,YAAY;;WAEZ,0BAA0B;WAC1B,iBAAiB;;WAEjB,iBAAiB;WACjB,OAAO;;WAEP;;;wBAuBK,UAAU,WAAW,mBAAmB,QAAQ,SAAS;;;;;;;;;;;wBA4FzD,gBAAgB,OAAO,eAAe,QAAQ,SAAS,eAAe;;;;;wBAQtE,aAAa,QAAQ,KAAK,0BAA0B,kBAAkB;;;;;;;;;;;;wBAqCtE,eAAe,QAAQ,gBAAgB,iBAAiB,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;wBAgPjF,cAAc,QAAQ,gBAAgB,iBAAiB,SAAS,uBAAuB;;;;;;;wBAsBvF,gBAAgB,QAAQ,gBAAgB,iBAAiB,SAAS,yBAAyB;;;;;;;;wBA4B3F,cAAc,QAAQ,KAAK,+BAA+B,0CAA0C;;qBC3yBvG;;UAGI;;WAEN;;WAEA;;;KAIC;WAAkC;WAAmB,QAAQ;;WAA8B;WAAoB,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;wBAgf5H,oBAAoB,iBAAiB;;UC/dpC;;WAEN;;WAEA;;WAEA;;WAEA;;;;;;;;;WASA;;WAEA,2BAA2B;;WAE3B;;WAEA;;WAEA;;;;;WAKA;;;qBAIE;;qBAGA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;wBAoTG,YAAY,MAAM,cAAc,UAAS,qBAA0B;;;;;;wBCvVnE,SAAS,gBAAgB,eAAe;;;;;wBAaxC,cAAc,WAAW,gBAAc;;qBAO1C;;UAGI;WACN;WACA;;;;;;wBAOK,OAAO,WAAW,WAAW,aAAkB;;UAc9C;;WAEN;;WAEA;;WAEA;;;;;;;wBAQK,KAAK,4BAA4B,iBAAe;;;;;;wBAkBhD,mBAAmB,4BAA4B;UAS9C;;WAEN;;WAEA;;WAEA,aAAa;;UAGP;;WAEN;;WAEA;WACA;;;;;;wBAOK,kBAAkB,8BAA8B,6BAA6B,UAAS,qBAA0B;;UAmB/G;;WAEN;;WAEA;;WAEA,aAAa,sBAAsB;;;UAI7B,mCAAmC;;WAEzC;;;;;;;;;wBAuCK,qBAAqB,sBAAsB,sBAAsB,UAAS,8BAAmC;;;;;;wBA+B7G,iBAAiB,gBAAgB,kBAAkB,YAAiB;;UCrPnE;;WAEN;;WAEA;;WAEA;;WAEA;;;;;;wBAOK,WAAW,GAAG,YAAY,KAAK,YAAY,MAAM;;wBCHjD,MAAM;;;;;wBAgBN,SAAS,sBAAsB;;qBAmBlC;;;;;;wBAQG,WAAW,sBAAsB,sBAAsB;;UC1BtD;WACN;WACA;;WAEA;;WAEA;;;;;;;;;;wBAWK,eAAe,2BAA2B,iBAAe;;UAqBxD;;WAEN;;WAEA;;WAEA;;WAEA;;WAEA;;;;;;;;;wBAUK,iBAAiB,2BAA2B,WAAW,iBAAe;;;;;;wBAsCtE,gBAAgB,WAAW;;UAW1B;WACN;WACA;;WAEA;;;;;;;wBAQK,iBAAiB,WAAW,WAAW,iBAAe;;;;;;wBA2BtD,yBAAyB,mBAAmB,WAAW,iBAAe;UCvKrE;;WAEN;;WAEA;;;;;;WAMA;;;;;;wBAgBK,WAAW,2BAA2B,UAAS;;;;;KASnD;;UAGK;;WAEN;WACA;;WAEA;;WAEA;WACA;;WAEA;WACA,OAAO;;;;;;;;wBASF,aAAa,2BAA2B,UAAS;WAA0B;IAAqC;UAW/G;;WAEN;;WAEA;;WAEA;;;UAIM;WACN;WACA;;WAEA;;WAEA;;UAGM;;WAEN;WACA;;WAEA;;WAEA;;WAEA;;WAEA,QAAQ;;WAER;;WAEA;;WAEA;WACA,cAAc;;WAEd;WACA,cAAc;;;;;;;;wBAST,cAAc,2BAA2B,UAAS,iBAAsB;;UA6CvE;WACN;WACA;;;wBASK,MAAM,oBAAoB;;UAQzB;WACN;WACA;WACA;;WAEA;;WAEA,UAAU;;;wBAIL,YAAY,oBAAoB,aAAa;;;;;;;wBChJ7C,UAAU,WAAW;;UAgBpB;;WAEN;;WAEA;;WAEA;;WAEA;;WAEA;;;;;;;;;;;;;;;;wBAiBK,YAAY,SAAS"}
1
+ 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package/build/index.js CHANGED
@@ -201,6 +201,8 @@ function fitRows(x, y, intercept, k) {
201
201
  * With the same seed, the draws are equal to the draws of the copies in highways, packing and layout-contract.
202
202
  * `bootstrapTwo` draws two independent samples in each run: first the items of `a`, then the items of `b`.
203
203
  * `bootstrapLeastSquares` draws whole rows, and gives one interval for each coefficient from the same draws.
204
+ *
205
+ * `sampleTotalInterval` gives the interval of a population total from a sample without replacement.
204
206
  */
205
207
  /**
206
208
  * A percentile bootstrap interval of `statistic` over `data`. A run whose statistic is not finite (NaN or an
@@ -301,7 +303,7 @@ function sides(values, against) {
301
303
  };
302
304
  }
303
305
  /** The interval of the finite statistics of the runs. When no run is finite, low and high are equal to the estimate. */
304
- function ends(values, estimate, s, seed) {
306
+ function ends$1(values, estimate, s, seed) {
305
307
  const { runs, level } = s;
306
308
  const p = sides(values, s.against);
307
309
  if (values.length === 0) return {
@@ -339,7 +341,7 @@ function percentile(name, options, run, all) {
339
341
  const v = run(r);
340
342
  if (Number.isFinite(v)) values.push(v);
341
343
  }
342
- return ends(values, all(), s, r.seed);
344
+ return ends$1(values, all(), s, r.seed);
343
345
  }
344
346
  /**
345
347
  * The percentile bootstrap of `k` statistics from the same draws. Each run gives `k` statistics. Each statistic
@@ -354,7 +356,7 @@ function percentiles(name, options, k, run, all) {
354
356
  for (let j = 0; j < k; j++) if (Number.isFinite(v[j])) values[j].push(v[j]);
355
357
  }
356
358
  const estimate = all();
357
- return values.map((list, j) => ends(list, estimate[j], s, r.seed));
359
+ return values.map((list, j) => ends$1(list, estimate[j], s, r.seed));
358
360
  }
359
361
  /** A bootstrap interval of the median. */
360
362
  function bootstrapMedian(values, options = {}) {
@@ -385,6 +387,40 @@ function bootstrapClusters(rows, cluster, statistic, options = {}) {
385
387
  estimate
386
388
  };
387
389
  }
390
+ /**
391
+ * A bootstrap interval of the total of a population from a uniform sample of `m` of its `n` items, drawn without
392
+ * replacement. The estimate is `scale * sum(values)`. Each run draws `m` values with replacement, as `bootstrap`
393
+ * does. The deviation of each run from the sum of the sample gets the factor `scale * sqrt(1 - m / n)`, the finite
394
+ * population correction. When `m` is `n`, the interval is the estimate.
395
+ *
396
+ * The sample has 2 values or more, and each value is finite. With the same seed, the result is equal to the
397
+ * `bootstrap` of the same statistic, to the bit.
398
+ *
399
+ * The interval is narrow for a small sample. The draws give the variance of the sample with the divisor `m`, not
400
+ * `m - 1`, so the width gets the factor `sqrt((m - 1) / m)`. The skew of the values adds to the miss. In the tests,
401
+ * 400 samples of `m = 8` of `n = 40` hold the total 346 times (Wilson 0.828 to 0.895). At `m = 100` of `n = 200`,
402
+ * the coverage agrees with 95%. For a total over the pairs of the items, use `uStatisticInterval`.
403
+ */
404
+ function sampleTotalInterval(values, options) {
405
+ const name = "sampleTotalInterval";
406
+ const m = values.length;
407
+ const n = options.population;
408
+ if (m < 2) throw new RangeError(`${name}: the sample has 2 values or more, not ${m}.`);
409
+ if (!Number.isSafeInteger(n) || n < m) throw new RangeError(`${name}: population is a whole number of ${m} (the sample) or more, not ${n}.`);
410
+ for (const v of values) if (!Number.isFinite(v)) throw new RangeError(`${name}: each value is a finite number, not ${v}.`);
411
+ const scale = options.scale ?? n / m;
412
+ if (!(Number.isFinite(scale) && scale > 0)) throw new RangeError(`${name}: scale is a finite number more than 0, not ${scale}.`);
413
+ const all = sum(values);
414
+ const estimate = scale * all;
415
+ const spread = Math.sqrt(1 - m / n) * scale;
416
+ return bootstrap(values, (drawn) => estimate + spread * (sum(drawn) - all), options);
417
+ }
418
+ /** The sum of the values from the first to the last, as `values.reduce((s, t) => s + t, 0)`. */
419
+ function sum(values) {
420
+ let s = 0;
421
+ for (const v of values) s += v;
422
+ return s;
423
+ }
388
424
  // src/distribution.ts
389
425
  /**
390
426
  * The shape of a sample: the count of its modes, and the smooth law with the highest likelihood. Use them to read the
@@ -2936,6 +2972,182 @@ function optionFloor(options) {
2936
2972
  }
2937
2973
  throw new RangeError(`optionFloor: no count under 10,000,000 for sigma ${sigma} and delta ${delta}.`);
2938
2974
  }
2939
- export { KENDALL_EXACT, RESPONSE_LAMBDAS, RESPONSE_MAX_POWER, RESPONSE_MAX_TERMS, RESPONSE_RECORDS_SCHEMA, Z95, bestSmoothLaw, binomialInterval, bootstrap, bootstrapClusters, bootstrapLeastSquares, bootstrapMedian, bootstrapMedianRatio, bootstrapTwo, brier, calibration, cohenKappa, compareRatios, fitResponse, heldOutError, heldOutErrorAt, holm, kendallTau, leastSquares, mean, median, medianInterval, modeCount, negativeBinomialInterval, noiseFloor, noiseVerdict, optionFloor, pairedPermutation, parseResponseRecord, partialConjunction, predictResponse, quantile, quantileInterval, quantileSamples, quantileSorted, ranks, responseCells, ridgeSolve, sd, signTest, signTestPower, sliceResponse, smoothLawScores, sorted, spearman, summarize, surfaceResponse, tQuantile, twoSamplePermutation, whenHolds, wilson, wilsonSampleSize };
2975
+ // src/u-statistic.ts
2976
+ /**
2977
+ * The interval of a U-statistic from a uniform sample of `m` of `n` units, drawn without replacement. A kernel `h`
2978
+ * gives a value to each set of `r` units. The total of the population is the sum of `h` over all its sets of `r`.
2979
+ */
2980
+ /**
2981
+ * The smallest sample `m` at which the method `"auto"` uses the method `"tight"`. The value comes from the pinned
2982
+ * counts of the tests. No measured `m` obeys the rule, so the value is infinite. The TSDoc of `uStatisticInterval`
2983
+ * gives the rule and the counts.
2984
+ */
2985
+ const U_STATISTIC_TIGHT_MIN_SAMPLE = Number.POSITIVE_INFINITY;
2986
+ /**
2987
+ * This function gives the interval of a total over all the sets of `r` units of a population. The data is a uniform
2988
+ * sample of `m` of the `n` units, without replacement. An example is the count of crossings between all pairs of
2989
+ * routes. The input is the total of each sampled unit: the sum of the kernel over the sets of `r` sampled units
2990
+ * that hold the unit. Thus the sum of the totals is `r * S`, with `S` the total of the sample. The kernel is
2991
+ * symmetric.
2992
+ *
2993
+ * The estimate is `S * C(n, r) / C(m, r)`. It is the U-statistic `U = S / C(m, r)` times `C(n, r)`. At `r = 1`,
2994
+ * the estimate is `n / m` times the sum of the sample. When `m` is `n`, the interval is the estimate.
2995
+ *
2996
+ * The method `"conservative"` uses the inequality of Hoeffding (1963) for U-statistics, with `k = floor(m / r)`. The
2997
+ * half width of the mean is `(b - a) * sqrt(ln(2 / (1 - level)) / (2 k))`, with `[a, b]` the range of the kernel.
2998
+ * The bound is also true for a sample without replacement (Ai, Kuželka and Wang 2022, Blanc 2023 Theorem 6).
2999
+ * Thus the interval holds at each `m`. It is wide at a small `m`.
3000
+ *
3001
+ * The method `"tight"` uses the jackknife variance of `U`, from the totals only, times the finite population
3002
+ * correction `1 - m / n`. The interval is `U` plus or minus the t quantile with `m - 1` degrees of freedom, times
3003
+ * the standard error.
3004
+ *
3005
+ * The correction comes from the inclusion probabilities of a sample without replacement. The variance of the linear
3006
+ * part of `U` (its Hájek projection) gets exactly the factor `1 - m / n`. The variance of the remainder gets a
3007
+ * smaller factor, near `(1 - m / n)^2`, relative to an independent sample. For `r = 2` this factor is
3008
+ * `(n - m)(n - m - 1) / ((n - 2)(n - 3))`. Thus this estimate of the variance is exact for a linear kernel, and
3009
+ * larger than the variance for other kernels. The tests read the two facts over all samples of small populations.
3010
+ *
3011
+ * The method `"tight"` does not give an interval of width 0 when `m` is less than `n`. When all the totals are
3012
+ * equal, the jackknife variance is 0. Then the function uses the method `"conservative"` for the sample, and the
3013
+ * result has `method: "conservative"`. Without `range`, the function throws a `RangeError` for this sample.
3014
+ *
3015
+ * The method `"tight"` has no proof of its coverage. The tests use 200 samples of made-up populations at the level
3016
+ * 0.95. The table gives the hits of 200 for each population `n` and sample `m`. Each count includes the fallback.
3017
+ *
3018
+ * | n / m | sparse | crossings | skewed |
3019
+ * | --- | --- | --- | --- |
3020
+ * | 40 / 8 | 200 | 200 | 183 |
3021
+ * | 40 / 10 | 200 | 200 | 187 |
3022
+ * | 40 / 12 | 200 | 183 | 189 |
3023
+ * | 40 / 20 | 180 | 183 | 188 |
3024
+ * | 40 / 36 | 192 | 189 | 193 |
3025
+ * | 60 / 8 | 200 | 200 | 181 |
3026
+ * | 60 / 10 | 200 | 200 | 180 |
3027
+ * | 60 / 12 | 200 | 195 | 186 |
3028
+ * | 60 / 20 | 184 | 190 | 183 |
3029
+ * | 60 / 40 | 186 | 193 | 180 |
3030
+ * | 120 / 8 | 200 | 200 | 177 |
3031
+ * | 120 / 10 | 200 | 192 | 175 |
3032
+ * | 120 / 12 | 200 | 189 | 178 |
3033
+ * | 120 / 20 | 191 | 193 | 182 |
3034
+ * | 120 / 40 | 194 | 192 | 185 |
3035
+ * | 120 / 60 | 195 | 189 | 185 |
3036
+ * | 120 / 108 | 187 | 185 | 190 |
3037
+ *
3038
+ * The sparse kernel holds 2% to 3% of the pairs. The skewed kernel has a few large values. At `m = 8`, the skewed
3039
+ * kernel gets 177 to 183 of 200, a coverage of 0.885 to 0.915. No row has 190 or more in each kernel.
3040
+ *
3041
+ * The method `"auto"` needs `range`. It uses the method `"tight"` when `m` is `U_STATISTIC_TIGHT_MIN_SAMPLE` or more
3042
+ * and the variance is more than 0. Otherwise, it uses the method `"conservative"`.
3043
+ *
3044
+ * The rule for `U_STATISTIC_TIGHT_MIN_SAMPLE` is the smallest `m` of the table with 190 of 200 or more in each cell.
3045
+ * No `m` of the table obeys the rule. The last `m` with a count below 190 is 108, the largest `m` of the table. The
3046
+ * table has no larger `m`, so the constant is infinite. Thus the method `"auto"` uses the method `"conservative"` at
3047
+ * each `m` less than `n`.
3048
+ *
3049
+ * With `range`, the interval of the mean stays in `[a, b]`, and each total is in the range of a sum of
3050
+ * `C(m - 1, r - 1)` kernel values.
3051
+ *
3052
+ * @param totals - The total of each unit of the sample. The sample has more units than `r`.
3053
+ * @param options - The order, the population, the method, the level and the range of the kernel.
3054
+ * @returns The estimate and the interval of the total, and of the mean of the kernel.
3055
+ */
3056
+ function uStatisticInterval(totals, options) {
3057
+ const name = "uStatisticInterval";
3058
+ const { order: r, population: n, method: requested } = options;
3059
+ const m = totals.length;
3060
+ const level = options.level ?? .95;
3061
+ if (!Number.isSafeInteger(r) || r < 1) throw new RangeError(`${name}: order is a whole number of 1 or more, not ${r}.`);
3062
+ if (m <= r) throw new RangeError(`${name}: the sample has more units than the order ${r}, not ${m}.`);
3063
+ if (!Number.isSafeInteger(n) || n < m) throw new RangeError(`${name}: population is a whole number of ${m} (the sample) or more, not ${n}.`);
3064
+ if (requested !== "conservative" && requested !== "tight" && requested !== "auto") throw new RangeError(`${name}: method is "conservative", "tight" or "auto", not ${String(requested)}.`);
3065
+ if (!(level > 0 && level < 1)) throw new RangeError(`${name}: level is more than 0 and less than 1, not ${level}.`);
3066
+ for (const t of totals) if (!Number.isFinite(t)) throw new RangeError(`${name}: each total is a finite number, not ${t}.`);
3067
+ const range = options.range;
3068
+ if (range !== void 0) {
3069
+ const [a, b] = range;
3070
+ if (!(Number.isFinite(a) && Number.isFinite(b) && a < b)) throw new RangeError(`${name}: range is two finite numbers a < b, not ${a} and ${b}.`);
3071
+ const sets = choose(m - 1, r - 1);
3072
+ const slack = 1e-9 * Math.max(Math.abs(a), Math.abs(b)) * sets;
3073
+ for (const t of totals) if (t < a * sets - slack || t > b * sets + slack) throw new RangeError(`${name}: each total is from ${a * sets} to ${b * sets} for this range, not ${t}.`);
3074
+ } else if (requested !== "tight") throw new RangeError(`${name}: the method "${requested}" needs the range of the kernel.`);
3075
+ let sum = 0;
3076
+ for (const t of totals) sum += t;
3077
+ const s = sum / r;
3078
+ const subsets = choose(n, r);
3079
+ const sampleSets = choose(m, r);
3080
+ const estimate = s * subsets / sampleSets;
3081
+ const u = s / sampleSets;
3082
+ const base = {
3083
+ estimate,
3084
+ level,
3085
+ requested,
3086
+ subsets
3087
+ };
3088
+ const centre = sum / m;
3089
+ let squares = 0;
3090
+ for (const t of totals) squares += (t - centre) ** 2;
3091
+ const variance = totals.every((t) => t === totals[0]) ? 0 : (1 - m / n) * ((m - 1) / m) * squares / choose(m - 1, r) ** 2;
3092
+ if (m === n) {
3093
+ const method = requested === "conservative" || requested === "auto" && m < U_STATISTIC_TIGHT_MIN_SAMPLE ? "conservative" : "tight";
3094
+ return {
3095
+ ...base,
3096
+ low: estimate,
3097
+ high: estimate,
3098
+ method,
3099
+ mean: {
3100
+ estimate: u,
3101
+ low: u,
3102
+ high: u
3103
+ },
3104
+ ...method === "tight" ? {
3105
+ standardError: 0,
3106
+ df: m - 1
3107
+ } : {}
3108
+ };
3109
+ }
3110
+ if ((requested === "tight" || requested === "auto" && m >= U_STATISTIC_TIGHT_MIN_SAMPLE) && variance > 0) {
3111
+ const df = m - 1;
3112
+ const se = Math.sqrt(variance);
3113
+ const half = tQuantile(1 - (1 - level) / 2, df) * se;
3114
+ return {
3115
+ ...base,
3116
+ method: "tight",
3117
+ ...ends(u, u - half, u + half, range, subsets),
3118
+ standardError: se * subsets,
3119
+ df
3120
+ };
3121
+ }
3122
+ if (range === void 0) throw new RangeError(`${name}: the jackknife variance is 0, because all the totals are equal. Give the range, or use the method "conservative".`);
3123
+ const k = Math.floor(m / r);
3124
+ const half = (range[1] - range[0]) * Math.sqrt(Math.log(2 / (1 - level)) / (2 * k));
3125
+ return {
3126
+ ...base,
3127
+ method: "conservative",
3128
+ ...ends(u, u - half, u + half, range, subsets)
3129
+ };
3130
+ }
3131
+ /** This function gives the interval of the mean in the range, if there is a range, and scales it to the total. */
3132
+ function ends(u, lowMean, highMean, range, subsets) {
3133
+ const low = range ? Math.max(range[0], lowMean) : lowMean;
3134
+ const high = range ? Math.min(range[1], highMean) : highMean;
3135
+ return {
3136
+ low: low * subsets,
3137
+ high: high * subsets,
3138
+ mean: {
3139
+ estimate: u,
3140
+ low,
3141
+ high
3142
+ }
3143
+ };
3144
+ }
3145
+ /** The binomial coefficient `C(n, k)`, as a product. Each step is a whole number, so it is exact below 2^53. */
3146
+ function choose(n, k) {
3147
+ let c = 1;
3148
+ for (let j = 0; j < k; j++) c = c * (n - j) / (j + 1);
3149
+ return c;
3150
+ }
3151
+ export { KENDALL_EXACT, RESPONSE_LAMBDAS, RESPONSE_MAX_POWER, RESPONSE_MAX_TERMS, RESPONSE_RECORDS_SCHEMA, U_STATISTIC_TIGHT_MIN_SAMPLE, Z95, bestSmoothLaw, binomialInterval, bootstrap, bootstrapClusters, bootstrapLeastSquares, bootstrapMedian, bootstrapMedianRatio, bootstrapTwo, brier, calibration, cohenKappa, compareRatios, fitResponse, heldOutError, heldOutErrorAt, holm, kendallTau, leastSquares, mean, median, medianInterval, modeCount, negativeBinomialInterval, noiseFloor, noiseVerdict, optionFloor, pairedPermutation, parseResponseRecord, partialConjunction, predictResponse, quantile, quantileInterval, quantileSamples, quantileSorted, ranks, responseCells, ridgeSolve, sampleTotalInterval, sd, signTest, signTestPower, sliceResponse, smoothLawScores, sorted, spearman, summarize, surfaceResponse, tQuantile, twoSamplePermutation, uStatisticInterval, whenHolds, wilson, wilsonSampleSize };
2940
3152
 
2941
3153
  //# sourceMappingURL=index.js.map