@marimo-team/islands 0.25.3-dev20 → 0.25.3-dev200

package/src/core/config/__tests__/app-config.test.ts

@@ -0,0 +1,64 @@
+/* Copyright 2026 Marimo. All rights reserved. */
+
+import { atom, createStore } from "jotai";
+import { describe, expect, it } from "vitest";
+import { partial } from "@/__mocks__/partial";
+import type { Document, NotebookReplica } from "@/core/notebook/replica";
+import { activeNotebookReplicaAtom } from "@/core/session/active-notebook";
+import { appConfigAtom, pageAppConfigAtom } from "../config";
+
+function document(app_config: Record<string, unknown>, version = 1): Document {
+  return {
+    revision: {
+      notebook_id: "nb",
+      order: [],
+      app_config,
+      etag: `etag-${version}`,
+      saved_etag: null,
+      order_etag: "order",
+      app_config_etag: "config",
+      version,
+    },
+    cells: new Map(),
+  };
+}
+
+function connect(store: ReturnType<typeof createStore>, current: Document) {
+  store.set(
+    activeNotebookReplicaAtom,
+    partial<NotebookReplica>({ documentAtom: atom(current) }, "replica"),
+  );
+}
+
+describe("appConfigAtom", () => {
+  it("reads the page's config until the host document arrives", () => {
+    const store = createStore();
+    expect(store.get(appConfigAtom).width).toBe("compact");
+    store.set(pageAppConfigAtom, { width: "full" });
+    expect(store.get(appConfigAtom).width).toBe("full");
+    connect(store, document({ width: "compact" }));
+    expect(store.get(appConfigAtom).width).toBe("compact");
+  });
+
+  it("fills what the host document leaves out with Python's defaults", () => {
+    const store = createStore();
+    store.set(pageAppConfigAtom, { width: "full" });
+    // The document carries only the options that differ from the defaults.
+    connect(store, document({}));
+    expect(store.get(appConfigAtom)).toEqual({
+      width: "compact",
+      auto_download: [],
+      sql_output: "auto",
+    });
+  });
+
+  it("keeps the same object while the record is unchanged", () => {
+    const store = createStore();
+    connect(store, document({ width: "full" }, 1));
+    const first = store.get(appConfigAtom);
+    connect(store, document({ width: "full" }, 2));
+    expect(store.get(appConfigAtom)).toBe(first);
+    connect(store, document({ width: "medium" }, 3));
+    expect(store.get(appConfigAtom).width).toBe("medium");
+  });
+});

package/src/core/config/__tests__/config-schema.test.ts

@@ -16,13 +16,18 @@ import {
   UserConfigSchema,
 } from "../config-schema";
 
+test("legacy Manual config resolves to Read only", () => {
+  const config = UserConfigSchema.parse({ ai: { mode: "manual" } });
+  expect(config).toEqual(UserConfigSchema.parse({ ai: { mode: "ask" } }));
+});
+
 test("default AppConfig", () => {
   const defaultConfig = AppConfigSchema.parse({});
   expect(defaultConfig).toMatchInlineSnapshot(`
     {
       "auto_download": [],
       "sql_output": "auto",
-      "width": "medium",
+      "width": "compact",
     }
   `);
 });
@@ -51,7 +56,7 @@ test("default UserConfig - empty", () => {
         "custom_providers": {},
         "enabled": true,
         "inline_tooltip": false,
-        "mode": "manual",
+        "mode": "ask",
         "models": {
           "custom_models": [],
           "displayed_models": [],
@@ -79,6 +84,7 @@ test("default UserConfig - empty", () => {
       "experimental": {},
       "file_browser": {},
       "formatting": {
+        "infer_types": "off",
         "line_length": 79,
       },
       "keymap": {
@@ -127,7 +133,7 @@ test("default UserConfig - one level", () => {
         "custom_providers": {},
         "enabled": true,
         "inline_tooltip": false,
-        "mode": "manual",
+        "mode": "ask",
         "models": {
           "custom_models": [],
           "displayed_models": [],
@@ -155,6 +161,7 @@ test("default UserConfig - one level", () => {
       "experimental": {},
       "file_browser": {},
       "formatting": {
+        "infer_types": "off",
         "line_length": 79,
       },
       "keymap": {
@@ -273,7 +280,7 @@ test("resolvedMarimoConfigAtom overrides correctly and does not mutate the origi
       autosave_delay: 1000,
       format_on_save: false,
     },
-    formatting: { line_length: 79 },
+    formatting: { line_length: 79, infer_types: "off" },
   };
 
   const overrides = {
@@ -299,7 +306,7 @@ test("resolvedMarimoConfigAtom overrides correctly and does not mutate the origi
       autosave_delay: 1000,
       format_on_save: false,
     },
-    formatting: { line_length: 79 },
+    formatting: { line_length: 79, infer_types: "off" },
     display: { theme: "dark" },
   });
 
@@ -314,7 +321,7 @@ test("resolvedMarimoConfigAtom overrides correctly and does not mutate the origi
       autosave_delay: 1000,
       format_on_save: false,
     },
-    formatting: { line_length: 79 },
+    formatting: { line_length: 79, infer_types: "off" },
   });
 });
 

package/src/core/config/config-schema.ts

@@ -44,6 +44,8 @@ export const DEFAULT_AI_MODEL = "openai/gpt-4o";
  */
 const AUTO_DOWNLOAD_FORMATS = ["html", "markdown", "ipynb"] as const;
 
+export const TYPE_INFERENCE_MODES = ["off", "jedi"] as const;
+
 export type CopilotMode = NonNullable<schemas["AiConfig"]["mode"]>;
 export const COPILOT_MODES: CopilotMode[] = [
   "manual",
@@ -112,6 +114,7 @@ export const UserConfigSchema = z
           .nonnegative()
           .prefault(79)
           .transform((n) => Math.min(n, 1000)),
+        infer_types: z.enum(TYPE_INFERENCE_MODES).prefault("off"),
       })
       .prefault({}),
     keymap: z
@@ -167,7 +170,10 @@ export const UserConfigSchema = z
         enabled: z.boolean().prefault(true),
         rules: z.string().prefault(""),
         max_tokens: z.number().int().positive().nullable().optional(),
-        mode: z.enum(COPILOT_MODES).prefault("manual"),
+        mode: z
+          .enum(COPILOT_MODES)
+          .transform((mode) => (mode === "manual" ? "ask" : mode))
+          .prefault("ask"),
         inline_tooltip: z.boolean().prefault(false),
         allow_provider_config: z.boolean().prefault(true),
         open_ai: AiConfigSchema.optional(),
@@ -272,11 +278,15 @@ export const SqlOutputSchema = z
   .enum(VALID_SQL_OUTPUT_FORMATS)
   .prefault("auto");
 
+/**
+ * The notebook's app config. The defaults are Python's `_AppConfig` defaults,
+ * since the host document carries only what differs from them.
+ */
 export const AppConfigSchema = z
   .object({
     width: z
       .enum(VALID_APP_WIDTHS)
-      .prefault("medium")
+      .prefault("compact")
       .transform((width) => {
         if (width === "normal") {
           return "compact";
@@ -290,7 +300,7 @@ export const AppConfigSchema = z
     sql_output: SqlOutputSchema,
   })
   .prefault(() => ({
-    width: "medium" as const,
+    width: "compact" as const,
     auto_download: [],
     sql_output: "auto" as const,
   }));

package/src/core/config/config.ts

@@ -1,8 +1,11 @@
 /* Copyright 2026 Marimo. All rights reserved. */
+import { dequal } from "dequal";
 import { atom, useAtom, useAtomValue, useSetAtom } from "jotai";
+import { selectAtom } from "jotai/vanilla/utils";
 import { mergeWith } from "lodash-es";
 import { OverridingHotkeyProvider } from "../hotkeys/hotkeys";
 import { type Platform, resolvePlatform } from "../hotkeys/shortcuts";
+import { confirmedDocumentAtom } from "../session/active-notebook";
 import { store } from "../state/jotai";
 import {
   type AppConfig,
@@ -134,19 +137,30 @@ export function isAiFeatureEnabled(config: UserConfig) {
 }
 
 /**
- * Atom for storing the app config.
+ * The app config the page was served with, as the server wrote it.
+ *
+ * The host document carries the current one; this holds its place until
+ * that document arrives. It goes once every page carries its document.
  */
-export const appConfigAtom = atom<AppConfig>(parseAppConfig({}));
-
-/**
- * Returns the app config.
- */
-export function useAppConfig() {
-  return useAtom(appConfigAtom);
-}
-
-export function useSetAppConfig() {
-  return useSetAtom(appConfigAtom);
+export const pageAppConfigAtom = atom<unknown>({});
+
+/** The app config record in force, stable while its contents are. */
+const appConfigRecordAtom = selectAtom(
+  atom(
+    (get) =>
+      get(confirmedDocumentAtom)?.revision.app_config ?? get(pageAppConfigAtom),
+  ),
+  (record) => record,
+  dequal,
+);
+
+/** The notebook's app config, as the host document carries it. */
+export const appConfigAtom = atom((get) =>
+  parseAppConfig(get(appConfigRecordAtom)),
+);
+
+export function useAppConfig(): AppConfig {
+  return useAtomValue(appConfigAtom);
 }
 
 export function getAppConfig() {

package/src/core/datasets/__tests__/data-source-discovery.test.ts

@@ -4,7 +4,7 @@ import { requestId } from "@/__tests__/branded";
 import type { DataSourceDiscoveryResult } from "@/core/kernel/messages";
 import { connectionAtom } from "@/core/network/connection";
 import { store } from "@/core/state/jotai";
-import { ConnectionState } from "@/core/websocket/types";
+import { ConnectionState } from "@/core/session/types";
 import {
   fetchDataSourceDiscovery,
   invalidateDataSourceDiscovery,
@@ -185,8 +185,8 @@ describe("isDetectedSourceConnected", () => {
   });
   const emptySnapshot = {
     dialects: [] as string[],
-    storageProtocols: [] as string[],
-    storageBackendTypes: [] as string[],
+    storageProtocols: new Set<string>(),
+    storageBackendTypes: new Set<string>(),
   };
 
   it("does not hide a source when nothing is connected", () => {
@@ -242,7 +242,7 @@ describe("isDetectedSourceConnected", () => {
     expect(
       isDetectedSourceConnected(s3, {
         ...emptySnapshot,
-        storageProtocols: ["s3"],
+        storageProtocols: new Set(["s3"]),
       }),
     ).toBe(true);
   });
@@ -262,7 +262,7 @@ describe("isDetectedSourceConnected", () => {
     expect(
       isDetectedSourceConnected(hf, {
         ...emptySnapshot,
-        storageBackendTypes: ["huggingface"],
+        storageBackendTypes: new Set(["huggingface"]),
       }),
     ).toBe(true);
   });

package/src/core/datasets/data-source-discovery.ts

@@ -27,8 +27,8 @@ export function matchesDiscoveryGroup(
  */
 export interface LiveConnectionSnapshot {
   dialects: readonly string[];
-  storageProtocols: readonly string[];
-  storageBackendTypes: readonly string[];
+  storageProtocols: ReadonlySet<string>;
+  storageBackendTypes: ReadonlySet<string>;
 }
 
 /**
@@ -47,15 +47,13 @@ export function isDetectedSourceConnected(
   }
 
   if (
-    match.protocols.some((protocol) =>
-      snapshot.storageProtocols.includes(protocol),
-    )
+    match.protocols.some((protocol) => snapshot.storageProtocols.has(protocol))
   ) {
     return true;
   }
 
   return match.backendTypes.some((backendType) =>
-    snapshot.storageBackendTypes.includes(backendType),
+    snapshot.storageBackendTypes.has(backendType),
   );
 }
 

package/src/core/documentation/doc-lookup.ts

@@ -17,7 +17,7 @@ export async function requestOutputDocumentation(
   qualifiedName: string,
 ): Promise<void> {
   // We need any valid cell_id for the completion request.
-  const cellId = getCells().inOrderIds.at(0);
+  const cellId = getCells().at(0);
   if (!cellId) {
     return;
   }

package/src/core/edit-app.tsx

@@ -5,8 +5,8 @@ import { Tooltip } from "radix-ui";
 
 const TooltipProvider = Tooltip.Provider;
 
-import { useAtomValue, useSetAtom } from "jotai";
-import { useEffect } from "react";
+import { useAtomValue } from "jotai";
+import { lazy, useEffect } from "react";
 import { NotStartedConnectionAlert } from "@/components/editor/alerts/connecting-alert";
 import { Controls } from "@/components/editor/controls/Controls";
 import { SandboxController } from "@/components/editor/chrome/panels/sandbox-controller";
@@ -27,23 +27,22 @@ import { useSetOutputsExpanded } from "../components/editor/actions/useSetOutput
 import { CellArray } from "../components/editor/renderers/cell-array";
 import { CellsRenderer } from "../components/editor/renderers/cells-renderer";
 import { useHotkey } from "../hooks/useHotkey";
-import {
-  hasCellsAtom,
-  notebookIsRunningAtom,
-  numColumnsAtom,
-  useCellActions,
-} from "./cells/cells";
+import { hasCellsAtom, notebookIsRunningAtom } from "./cells/cells";
+import { numColumnsAtom } from "./cells/layout";
+import { useCellActions } from "./cells/actions";
 import type { AppConfig, UserConfig } from "./config/config-schema";
 import { RuntimeState } from "./kernel/RuntimeState";
-import { getSessionId } from "./kernel/session";
 import { useTogglePresenting } from "./layout/useTogglePresenting";
 import { viewStateAtom } from "./mode";
 import { useRequestClient } from "./network/requests";
 import { useFilename } from "./saving/filename";
-import { lastSavedNotebookAtom } from "./saving/state";
-import { useNotebookSession } from "./websocket/useNotebookSession";
+import type { ConnectionStatus } from "./session/types";
+
+const LazyCommandPalette = lazy(
+  () => import("../components/editor/controls/command-palette"),
+);
 
-interface AppProps {
+export interface EditAppProps {
   /**
    * The user config.
    */
@@ -56,19 +55,24 @@ interface AppProps {
    * If true, the floating controls will be hidden.
    */
   hideControls?: boolean;
+  /** The session's connection, which the page owns with the document model. */
+  connection: ConnectionStatus;
+  reconnect: () => Promise<void>;
 }
 
-export const EditApp: React.FC<AppProps> = ({
+/** The notebook editor. Rendered inside the page's `DocumentProvider`. */
+export const EditApp: React.FC<EditAppProps> = ({
   userConfig,
   appConfig,
   hideControls = false,
+  connection,
+  reconnect,
 }) => {
-  const { setCells, mergeAllColumns, collapseAllCells, expandAllCells } =
+  const { mergeAllColumns, collapseAllCells, expandAllCells } =
     useCellActions();
   const viewState = useAtomValue(viewStateAtom);
   const numColumns = useAtomValue(numColumnsAtom);
   const filename = useFilename();
-  const setLastSavedNotebook = useSetAtom(lastSavedNotebookAtom);
   const { sendComponentValues, sendInterrupt } = useRequestClient();
 
   const isEditing = viewState.mode === "edit";
@@ -81,19 +85,7 @@ export const EditApp: React.FC<AppProps> = ({
     return () => {
       RuntimeState.INSTANCE.stop();
     };
-  }, []);
-
-  const { connection, reconnect } = useNotebookSession({
-    autoInstantiate: userConfig.runtime.auto_instantiate,
-    setCells: (cells, layout) => {
-      setCells(cells);
-      const names = cells.map((cell) => cell.name);
-      const codes = cells.map((cell) => cell.code);
-      const configs = cells.map((cell) => cell.config);
-      setLastSavedNotebook({ names, codes, configs, layout });
-    },
-    sessionId: getSessionId(),
-  });
+  }, [sendComponentValues]);
 
   // Update document title whenever filename or app_title changes
   useEffect(() => {
@@ -228,6 +220,7 @@ export const EditApp: React.FC<AppProps> = ({
           />
         </TooltipProvider>
       )}
+      <LazyCommandPalette />
     </>
   );
 };

package/src/core/errors/error-entries.ts

@@ -80,7 +80,7 @@ export function getCellErrorEntries(store: JotaiStore): CellErrorEntry[] {
   const { cellIds, cellRuntime, cellData } = store.get(notebookAtom);
   const entries: CellErrorEntry[] = [];
 
-  for (const [cellIndex, cellId] of cellIds.inOrderIds.entries()) {
+  for (const [cellIndex, cellId] of cellIds.entries()) {
     const cell = cellRuntime[cellId];
     const output = cell.output;
     if (!output || !isErrorMime(output.mimetype)) {
@@ -122,6 +122,9 @@ export function describeError(error: MarimoError): string {
   if (error.type === "import-star") {
     return error.msg;
   }
+  if (error.type === "lazy-import") {
+    return error.msg;
+  }
   if (error.type === "ancestor-stopped") {
     return error.msg;
   }

package/src/core/export/hooks.ts

@@ -16,7 +16,7 @@ import { connectionAtom } from "../network/connection";
 import { useRequestClient } from "../network/requests";
 import type { UpdateCellOutputsRequest } from "../network/types";
 import { VirtualFileTracker } from "../static/virtual-file-tracker";
-import { ConnectionState } from "../websocket/types";
+import { ConnectionState } from "../session/types";
 
 const DELAY = 5000; // 5 seconds;
 

package/src/core/export/layout.ts

@@ -1,9 +1,9 @@
 /* Copyright 2026 Marimo. All rights reserved. */
 
-import { flushDocumentChanges } from "@/core/cells/document-changes";
+import { flushDocument } from "@/core/cells/document";
 import { getSerializedLayout } from "@/core/layout/layout";
 
 export async function getExportLayout() {
-  await flushDocumentChanges();
+  await flushDocument();
   return getSerializedLayout();
 }

package/src/core/hotkeys/actions.ts

@@ -2,6 +2,7 @@
 import { atom, useAtomValue, useSetAtom } from "jotai";
 import useEvent from "react-use-event-hook";
 import type { HotkeyAction } from "@/core/hotkeys/hotkeys";
+import { Objects } from "@/utils/objects";
 
 /**
  * Map of registered keyboard shortcuts and their callbacks.
@@ -29,10 +30,7 @@ export function useSetRegisteredAction() {
       },
     ),
     unregisterAction: useEvent((shortcut: HotkeyAction) => {
-      set((actions) => {
-        const { [shortcut]: unused, ...rest } = actions;
-        return rest;
-      });
+      set((actions) => Objects.omit(actions, [shortcut]));
     }),
   };
 }

package/src/core/islands/__tests__/bootstrap.test.ts

@@ -1,24 +1,29 @@
 /* Copyright 2026 Marimo. All rights reserved. */
 
+import type { NotebookTransport } from "@marimo-team/client";
 import { createStore } from "jotai";
 import { afterEach, describe, expect, it, vi } from "vitest";
+import { cellId } from "@/__tests__/branded";
+import { notebookAtom } from "@/core/cells/cells";
+import {
+  fakeBackend,
+  fixtureMessages,
+} from "@/core/notebook/replica/__tests__/fixtures";
 import { RuntimeState } from "@/core/kernel/RuntimeState";
-import { attachmentsAtom } from "@/core/attachments/state";
-import { Logger } from "@/utils/Logger";
 import { initializeIslands } from "../bootstrap";
 import type { IslandsPyodideBridge } from "../bridge";
 import { islandsHydratedAtom, islandsPendingInitialRunsAtom } from "../state";
-import type { IslandsKernelMessage } from "../worker/worker";
-
-function completedRun(sessionGeneration: number): IslandsKernelMessage {
-  return {
-    sessionGeneration,
-    message: JSON.stringify({
-      op: "completed-run",
-      data: { op: "completed-run", run_id: null },
-    }) as IslandsKernelMessage["message"],
-  };
-}
+import type { NotificationMessage } from "@/core/kernel/messages";
+
+type Consumer = (
+  notification: NotificationMessage,
+  sessionGeneration: number,
+) => void;
+
+const completedRun = {
+  op: "completed-run",
+  run_id: null,
+} as NotificationMessage;
 
 describe("initializeIslands", () => {
   afterEach(vi.restoreAllMocks);
@@ -28,12 +33,13 @@ describe("initializeIslands", () => {
     root.innerHTML =
       '<marimo-island data-app-id="app-1" data-reactive="true"></marimo-island>';
 
-    let consumeMessage: ((message: IslandsKernelMessage) => void) | undefined;
+    let consumeMessage: Consumer | undefined;
     const bridge = {
-      consumeMessages: (consumer: (message: IslandsKernelMessage) => void) => {
+      consumeNotifications: (consumer: Consumer) => {
         consumeMessage = consumer;
       },
       sendComponentValues: vi.fn(),
+      notebookBackend: fakeBackend(),
     } as unknown as IslandsPyodideBridge;
     const store = createStore();
     vi.spyOn(RuntimeState.INSTANCE, "start").mockImplementation(
@@ -50,38 +56,58 @@ describe("initializeIslands", () => {
     expect(store.get(islandsHydratedAtom)).toBe(false);
     store.set(islandsPendingInitialRunsAtom, new Set([1, 2]));
 
-    const errors = vi.spyOn(Logger, "error");
-    consumeMessage?.({
-      sessionGeneration: 1,
-      message: JSON.stringify({
-        op: "attachments",
-        data: {
-          op: "attachments",
-          attachments: [
-            {
-              id: "a1",
-              kind: "agent",
-              name: "Pi",
-              since: "2026-10-14T00:00:00Z",
-              notebook_id: "nb-test",
-              identity: "pi-thread",
-            },
-          ],
-        },
-      }) as IslandsKernelMessage["message"],
-    });
-    expect(errors).not.toHaveBeenCalled();
-    expect(store.get(attachmentsAtom)).toEqual([]);
-    expect(store.get(islandsPendingInitialRunsAtom)).toEqual(new Set([1, 2]));
-
-    consumeMessage?.(completedRun(1));
+    consumeMessage?.(completedRun, 1);
     expect(store.get(islandsHydratedAtom)).toBe(false);
 
-    consumeMessage?.(completedRun(1));
-    consumeMessage?.(completedRun(0));
+    consumeMessage?.(completedRun, 1);
+    consumeMessage?.(completedRun, 0);
     expect(store.get(islandsHydratedAtom)).toBe(false);
 
-    consumeMessage?.(completedRun(2));
+    consumeMessage?.(completedRun, 2);
     expect(store.get(islandsHydratedAtom)).toBe(true);
   });
 });
+
+describe("initializeIslands document", () => {
+  afterEach(vi.restoreAllMocks);
+
+  it("fills the notebook's cells from the managed session's host document", async () => {
+    const root = document.createElement("div");
+    root.innerHTML =
+      '<marimo-island data-app-id="app-1" data-reactive="true"></marimo-island>';
+    let handlers: Parameters<NotebookTransport>[1] | undefined;
+    const transport: NotebookTransport = (_attempt, opened) =>
+      new Promise(() => {
+        handlers = opened;
+        opened.open();
+      });
+    const bridge = {
+      consumeNotifications: vi.fn(),
+      sendComponentValues: vi.fn(),
+      notebookBackend: fakeBackend({ transport }),
+    } as unknown as IslandsPyodideBridge;
+    const store = createStore();
+    vi.spyOn(RuntimeState.INSTANCE, "start").mockImplementation(
+      () => undefined,
+    );
+
+    await initializeIslands({
+      bridge,
+      store,
+      root,
+      autoInitializePlugins: false,
+    });
+    await vi.waitFor(() => expect(handlers).toBeDefined());
+    for (const message of fixtureMessages("notebook-events.sse")) {
+      handlers?.message(message);
+    }
+
+    const notebook = store.get(notebookAtom);
+    expect(notebook.cellIds).toEqual(["c1", "c3", "k7f2"]);
+    expect(notebook.cellData[cellId("c3")].code).toBe("x = 21");
+    expect(notebook.cellRuntime[cellId("c3")]).toBeDefined();
+
+    handlers?.message({ event: "reset", data: {} });
+    expect(store.get(notebookAtom).cellIds).toEqual(["c1", "c3", "k7f2"]);
+  });
+});