@marimo-team/islands 0.25.3-dev12 → 0.25.3-dev122

package/src/components/editor/chrome/wrapper/__tests__/attachment-status.test.tsx

@@ -8,27 +8,31 @@ import {
   screen,
   waitFor,
 } from "@testing-library/react";
-import { createStore, Provider } from "jotai";
+import { atom, createStore, Provider } from "jotai";
 import { userEvent } from "storybook/test";
 import { afterEach, beforeEach, describe, expect, it, vi } from "vitest";
 import { PAIR_CONFIG } from "@/__tests__/fixtures/pair-config";
 import { TooltipProvider } from "@/components/ui/tooltip";
 import { toast } from "@/components/ui/use-toast";
-import { type Attachment, attachmentsAtom } from "@/core/attachments/state";
+import type { Attachment } from "@/core/attachments/state";
 import { pairConfigAtom } from "@/core/config/pair";
+import { createNotebookClient } from "@/core/host/notebook-client";
 import {
   type StableSessionId,
   stableSessionIdAtom,
 } from "@/core/kernel/session";
 import { API } from "@/core/network/api";
 import { connectionAtom } from "@/core/network/connection";
-import { WebSocketClosedReason, ConnectionState } from "@/core/websocket/types";
+import { notebookClientAtom } from "@/core/websocket/state";
+import { ConnectionState } from "@/core/websocket/types";
 import { Deferred } from "@/utils/Deferred";
 import { AttachmentStatus } from "../footer-items/attachment-status";
 
 vi.mock("@/components/ui/use-toast", () => ({ toast: vi.fn() }));
 vi.mock("@/core/network/api", () => ({ API: { post: vi.fn() } }));
 
+const attachmentsAtom = atom<Attachment[]>([]);
+
 const AGENT: Attachment = {
   id: "a1",
   kind: "agent",
@@ -41,6 +45,11 @@ function renderStatus(attachments: Attachment[] = [AGENT], preview = true) {
   const store = createStore();
   store.set(connectionAtom, { state: ConnectionState.OPEN });
   store.set(pairConfigAtom, { ...PAIR_CONFIG, hostEnabled: preview });
+  store.set(notebookClientAtom, {
+    ...createNotebookClient(store).client,
+    connectionAtom: atom({ state: ConnectionState.OPEN }),
+    attachmentsAtom,
+  });
   store.set(attachmentsAtom, attachments);
   store.set(stableSessionIdAtom, "stable/test" as StableSessionId);
   return {
@@ -342,21 +351,6 @@ describe("AttachmentStatus", () => {
     ).toBeDisabled();
   });
 
-  it.each([
-    { state: ConnectionState.CONNECTING },
-    { state: ConnectionState.CLOSING },
-    { state: ConnectionState.NOT_STARTED },
-    {
-      state: ConnectionState.CLOSED,
-      code: WebSocketClosedReason.KERNEL_DISCONNECTED,
-      reason: "offline",
-    },
-  ])("hides connected claims while the browser is %j", (connection) => {
-    const { store, container } = renderStatus();
-    act(() => store.set(connectionAtom, connection));
-    expect(container).toBeEmptyDOMElement();
-  });
-
   it("removes detached agents when the list is replaced", () => {
     const { store, container } = renderStatus([
       AGENT,

package/src/components/editor/chrome/wrapper/__tests__/pending-ai-cells.test.tsx

@@ -1,11 +1,12 @@
 /* Copyright 2026 Marimo. All rights reserved. */
 
-import { act, render, screen, within } from "@testing-library/react";
+import { act, fireEvent, render, screen, within } from "@testing-library/react";
 import { createStore, Provider } from "jotai";
 import { describe, expect, it, vi } from "vitest";
 import { cellId } from "@/__tests__/branded";
 import { TooltipProvider } from "@/components/ui/tooltip";
 import { stagedAICellsAtom, visibleForTesting } from "@/core/ai/staged-cells";
+import { scrollAndHighlightCell } from "../../../links/cell-link";
 import { PendingAICells } from "../pending-ai-cells";
 
 vi.mock("@/components/editor/cell/useDeleteCell", () => ({
@@ -29,6 +30,62 @@ vi.mock("@/components/editor/links/cell-link", () => ({
 }));
 
 describe("PendingAICells", () => {
+  it("navigates between pending cells through named controls", () => {
+    const store = createStore();
+    const first = cellId("first-pending-cell");
+    const second = cellId("second-pending-cell");
+    const third = cellId("third-pending-cell");
+    store.set(
+      stagedAICellsAtom,
+      new Map([
+        [first, { type: "add_cell" }],
+        [second, { type: "add_cell" }],
+        [third, { type: "add_cell" }],
+      ]),
+    );
+
+    render(
+      <Provider store={store}>
+        <TooltipProvider>
+          <PendingAICells />
+        </TooltipProvider>
+      </Provider>,
+    );
+
+    const next = screen.getByRole("button", { name: "Next pending AI cell" });
+    const previous = screen.getByRole("button", {
+      name: "Previous pending AI cell",
+    });
+
+    fireEvent.click(next);
+    expect(scrollAndHighlightCell).toHaveBeenLastCalledWith(first, "focus");
+    expect(screen.getByText("1 / 3")).toBeInTheDocument();
+
+    fireEvent.click(next);
+    expect(scrollAndHighlightCell).toHaveBeenLastCalledWith(second, "focus");
+    expect(screen.getByText("2 / 3")).toBeInTheDocument();
+
+    fireEvent.click(previous);
+    expect(scrollAndHighlightCell).toHaveBeenLastCalledWith(first, "focus");
+    expect(screen.getByText("1 / 3")).toBeInTheDocument();
+
+    fireEvent.click(next);
+    expect(scrollAndHighlightCell).toHaveBeenLastCalledWith(second, "focus");
+    expect(screen.getByText("2 / 3")).toBeInTheDocument();
+
+    fireEvent.click(next);
+    expect(scrollAndHighlightCell).toHaveBeenLastCalledWith(third, "focus");
+    expect(screen.getByText("3 / 3")).toBeInTheDocument();
+
+    fireEvent.click(next);
+    expect(scrollAndHighlightCell).toHaveBeenLastCalledWith(first, "focus");
+    expect(screen.getByText("1 / 3")).toBeInTheDocument();
+
+    fireEvent.click(previous);
+    expect(scrollAndHighlightCell).toHaveBeenLastCalledWith(third, "focus");
+    expect(screen.getByText("3 / 3")).toBeInTheDocument();
+  });
+
   it("disables bulk actions while cells are still generating", () => {
     const store = createStore();
     const generationId = Symbol("staged-cell-generation");

package/src/components/editor/chrome/wrapper/footer-items/runtime-settings.tsx

@@ -26,13 +26,7 @@ import { isWasm } from "@/core/wasm/utils";
 import { cn } from "@/utils/cn";
 import { FooterItem } from "../footer-item";
 
-interface RuntimeSettingsProps {
-  className?: string;
-}
-
-export const RuntimeSettings: React.FC<RuntimeSettingsProps> = ({
-  className,
-}) => {
+export const RuntimeSettings: React.FC = () => {
   const { saveUserConfig } = useRequestClient();
   const [config, setUserConfig] = useResolvedMarimoConfig();
 

package/src/components/editor/chrome/wrapper/pending-ai-cells.tsx

@@ -79,7 +79,12 @@ export const PendingAICells: React.FC = () => {
       <SparklesIcon className="h-4 w-4 text-primary" />
 
       <div className="flex items-center">
-        <Button variant="ghost" size="icon" onClick={() => clickNext("up")}>
+        <Button
+          aria-label="Previous pending AI cell"
+          variant="ghost"
+          size="icon"
+          onClick={() => clickNext("down")}
+        >
           <ChevronUp className="h-3.5 w-3.5" />
         </Button>
         <span className="text-xs font-mono min-w-14 text-center">
@@ -87,7 +92,12 @@ export const PendingAICells: React.FC = () => {
             ? `${listStagedCells.length} pending`
             : `${currentIndex + 1} / ${listStagedCells.length}`}
         </span>
-        <Button variant="ghost" size="icon" onClick={() => clickNext("down")}>
+        <Button
+          aria-label="Next pending AI cell"
+          variant="ghost"
+          size="icon"
+          onClick={() => clickNext("up")}
+        >
           <ChevronDown className="h-3.5 w-3.5" />
         </Button>
       </div>

package/src/components/editor/chrome/wrapper/storage.ts

@@ -15,7 +15,7 @@ let storedValue: string | null = null;
  */
 export function createStorage(location: "left" | "bottom"): PanelGroupStorage {
   return {
-    getItem(name) {
+    getItem(_name) {
       if (!storedValue) {
         return storedValue ?? null;
       }

package/src/components/editor/connections/components.tsx

@@ -48,7 +48,7 @@ export const SelectorButton: React.FC<{
 }> = ({ name, color, icon, onSelect }) => (
   <button
     type="button"
-    className="py-3 flex flex-col items-center justify-center gap-1 transition-all hover:scale-105 hover:brightness-110 rounded shadow-sm-solid hover:shadow-md-solid"
+    className="py-3 flex flex-col items-center justify-center gap-1 transition-[scale,filter,box-shadow] hover:scale-105 hover:brightness-110 rounded shadow-sm-solid hover:shadow-md-solid"
     style={{ backgroundColor: color }}
     onClick={onSelect}
   >

package/src/components/editor/controls/__tests__/command-palette.test.tsx

@@ -0,0 +1,53 @@
+/* Copyright 2026 Marimo. All rights reserved. */
+
+import { fireEvent, render, screen, waitFor } from "@testing-library/react";
+import { createStore, Provider } from "jotai";
+import { expect, it, vi } from "vitest";
+import { useNotebookActions } from "../../actions/useNotebookActions";
+import CommandPalette from "../command-palette";
+
+vi.mock("../../actions/useNotebookActions", () => ({
+  useNotebookActions: vi.fn(),
+}));
+vi.mock("../../actions/useCellActionButton", () => ({
+  useCellActionButtons: () => [],
+}));
+vi.mock("../../actions/useConfigActions", () => ({
+  useConfigActions: () => [],
+}));
+
+it("builds current actions only while open and keeps the opening shortcut active", async () => {
+  HTMLElement.prototype.scrollIntoView = vi.fn();
+  const firstAction = vi.fn();
+  const nextAction = vi.fn();
+  vi.mocked(useNotebookActions).mockReturnValue([
+    { label: "First action", handle: firstAction },
+  ]);
+  render(
+    <Provider store={createStore()}>
+      <CommandPalette />
+    </Provider>,
+  );
+  expect(useNotebookActions).not.toHaveBeenCalled();
+
+  fireEvent.keyDown(document, { key: "k", ctrlKey: true });
+  await screen.findByPlaceholderText("Type to search...");
+  fireEvent.click(screen.getByText("First action"));
+  await waitFor(() => expect(firstAction).toHaveBeenCalledOnce());
+  await waitFor(() =>
+    expect(screen.queryByPlaceholderText("Type to search...")).toBeNull(),
+  );
+
+  vi.mocked(useNotebookActions)
+    .mockClear()
+    .mockReturnValue([{ label: "Updated action", handle: nextAction }]);
+  fireEvent.keyDown(document, { key: "x" });
+  expect(useNotebookActions).not.toHaveBeenCalled();
+
+  fireEvent.keyDown(document, { key: "k", ctrlKey: true });
+  await screen.findByPlaceholderText("Type to search...");
+  expect(screen.queryByText("First action")).toBeNull();
+  fireEvent.click(screen.getByText("Updated action"));
+  await waitFor(() => expect(nextAction).toHaveBeenCalledOnce());
+  expect(firstAction).toHaveBeenCalledOnce();
+});

package/src/components/editor/controls/command-palette.tsx

@@ -1,6 +1,6 @@
 /* Copyright 2026 Marimo. All rights reserved. */
 
-import { useAtom, useAtomValue } from "jotai";
+import { useAtom, useAtomValue, useSetAtom } from "jotai";
 import {
   CommandDialog,
   CommandEmpty,
@@ -32,6 +32,25 @@ import { commandPaletteAtom } from "./state";
 
 const CommandPalette = () => {
   const [open, setOpen] = useAtom(commandPaletteAtom);
+  const hotkeys = useAtomValue(hotkeysAtom);
+
+  useEventListener(document, "keydown", (e) => {
+    if (parseShortcut(hotkeys.getHotkey("global.commandPalette").key)(e)) {
+      e.preventDefault();
+      setOpen((open) => !open);
+    }
+  });
+
+  return (
+    <CommandDialog open={open} onOpenChange={setOpen}>
+      <CommandPaletteContent />
+    </CommandDialog>
+  );
+};
+
+// The dialog mounts these subscriptions only while its content is present.
+const CommandPaletteContent = () => {
+  const setOpen = useSetAtom(commandPaletteAtom);
   const registeredActions = useRegisteredActions();
   const lastFocusedCell = useAtomValue(lastFocusedCellAtom);
   const hotkeys = useAtomValue(hotkeysAtom);
@@ -55,13 +74,6 @@ const CommandPalette = () => {
   const { recentCommands, addRecentCommand } = useRecentCommands();
   const recentCommandsSet = new Set(recentCommands);
 
-  useEventListener(document, "keydown", (e) => {
-    if (parseShortcut(hotkeys.getHotkey("global.commandPalette").key)(e)) {
-      e.preventDefault();
-      setOpen((open) => !open);
-    }
-  });
-
   const renderShortcutCommandItem = (
     shortcut: HotkeyAction,
     props: {
@@ -142,7 +154,7 @@ const CommandPalette = () => {
   };
 
   return (
-    <CommandDialog open={open} onOpenChange={setOpen}>
+    <>
       <CommandInput placeholder="Type to search..." />
       <CommandList>
         <CommandEmpty>No results found.</CommandEmpty>
@@ -211,7 +223,7 @@ const CommandPalette = () => {
           })}
         </CommandGroup>
       </CommandList>
-    </CommandDialog>
+    </>
   );
 };
 

package/src/components/editor/dynamic-favicon.tsx

@@ -1,8 +1,9 @@
 /* Copyright 2026 Marimo. All rights reserved. */
 
 import { usePrevious } from "@dnd-kit/utilities";
+import { useAtomValue } from "jotai";
 import { useEffect } from "react";
-import { useCellErrors } from "@/core/cells/cells";
+import { cellErrorCount } from "@/core/cells/cells";
 import { useEventListener } from "@/hooks/useEventListener";
 import successFaviconUrl from "../../assets/circle-check.ico";
 import runningFaviconUrl from "../../assets/circle-play.ico";
@@ -15,13 +16,6 @@ const FAVICON_PATHS = {
   error: errorFaviconUrl,
 } as const;
 
-// Cache favicon object URLs lazily
-type FaviconKey = keyof typeof FAVICON_PATHS;
-
-async function getFaviconUrl(key: FaviconKey): Promise<string> {
-  return FAVICON_PATHS[key];
-}
-
 function getOrCreateFavicon(): HTMLLinkElement {
   const existingFavicon =
     document.querySelector<HTMLLinkElement>("link[rel~='icon']");
@@ -44,16 +38,16 @@ function maybeSendNotification(numErrors: number) {
     return;
   }
 
-  const sendNotification = async () => {
+  const sendNotification = () => {
     if (numErrors === 0) {
       new Notification("Execution completed", {
         body: "Your notebook run completed successfully.",
-        icon: await getFaviconUrl("success"),
+        icon: FAVICON_PATHS.success,
       });
     } else {
       new Notification("Execution failed", {
         body: `Your notebook run encountered ${numErrors} error(s).`,
-        icon: await getFaviconUrl("error"),
+        icon: FAVICON_PATHS.error,
       });
     }
   };
@@ -75,7 +69,7 @@ function maybeSendNotification(numErrors: number) {
 
 export const DynamicFavicon = (props: Props) => {
   const { isRunning } = props;
-  const errors = useCellErrors();
+  const numErrors = useAtomValue(cellErrorCount);
 
   useEffect(() => {
     const favicon = getOrCreateFavicon();
@@ -86,46 +80,33 @@ export const DynamicFavicon = (props: Props) => {
       return;
     }
 
-    const updateFavicon = async () => {
-      let key: FaviconKey;
-      // When notebook is running, display running favicon
-      if (isRunning) {
-        key = "running";
-      } else {
-        // When run is complete, display success or error favicon
-        key = errors.length === 0 ? "success" : "error";
-      }
-      favicon.href = await getFaviconUrl(key);
+    const key = isRunning ? "running" : numErrors === 0 ? "success" : "error";
+    favicon.href = FAVICON_PATHS[key];
 
-      // If notebook is in focus, reset favicon after 3 seconds
-      // If not in focus, the focus event listener handles it
-      if (!document.hasFocus()) {
-        return;
-      }
-
-      const timeoutId = setTimeout(async () => {
-        favicon.href = await getFaviconUrl("idle");
-      }, 3000);
-
-      return () => clearTimeout(timeoutId);
-    };
+    if (!document.hasFocus()) {
+      // The focus listener resets the favicon when the user returns.
+      return;
+    }
 
-    updateFavicon();
-  }, [isRunning, errors]);
+    const timeoutId = setTimeout(() => {
+      favicon.href = FAVICON_PATHS.idle;
+    }, 3000);
+    return () => clearTimeout(timeoutId);
+  }, [isRunning, numErrors]);
 
   // Send user notification when run has completed
   const prevRunning = usePrevious(isRunning) ?? isRunning;
   useEffect(() => {
     if (prevRunning && !isRunning) {
-      maybeSendNotification(errors.length);
+      maybeSendNotification(numErrors);
     }
-  }, [errors, prevRunning, isRunning]);
+  }, [numErrors, prevRunning, isRunning]);
 
   // When notebook comes back in focus, reset favicon
-  useEventListener(window, "focus", async (_) => {
+  useEventListener(window, "focus", () => {
     if (!isRunning) {
       const favicon = getOrCreateFavicon();
-      favicon.href = await getFaviconUrl("idle");
+      favicon.href = FAVICON_PATHS.idle;
     }
   });
 

package/src/components/editor/errors/__tests__/send-error-report-button.test.tsx

@@ -8,7 +8,7 @@ import {
   screen,
   waitFor,
 } from "@testing-library/react";
-import { createStore, Provider, useAtomValue } from "jotai";
+import { atom, createStore, Provider, useAtomValue } from "jotai";
 import type React from "react";
 import { beforeEach, describe, expect, it, vi } from "vitest";
 import { MockNotebook } from "@/__mocks__/notebook";
@@ -16,7 +16,7 @@ import { cellId } from "@/__tests__/branded";
 import { PAIR_CONFIG } from "@/__tests__/fixtures/pair-config";
 import { TooltipProvider } from "@/components/ui/tooltip";
 import { toast } from "@/components/ui/use-toast";
-import { type Attachment, attachmentsAtom } from "@/core/attachments/state";
+import type { Attachment } from "@/core/attachments/state";
 import { exportedForTesting, notebookAtom } from "@/core/cells/cells";
 import {
   type CellOutputMessage,
@@ -25,6 +25,7 @@ import {
 } from "@/core/cells/error-report";
 import { pairConfigAtom } from "@/core/config/pair";
 import { notebookStateFromSession } from "@/core/cells/session";
+import { createNotebookClient } from "@/core/host/notebook-client";
 import type { MarimoError, OutputMessage } from "@/core/kernel/messages";
 import {
   type StableSessionId,
@@ -32,7 +33,8 @@ import {
 } from "@/core/kernel/session";
 import { API } from "@/core/network/api";
 import { connectionAtom } from "@/core/network/connection";
-import { WebSocketClosedReason, ConnectionState } from "@/core/websocket/types";
+import { notebookClientAtom } from "@/core/websocket/state";
+import { ConnectionState } from "@/core/websocket/types";
 import { Deferred } from "@/utils/Deferred";
 import { HTTPError } from "@/utils/errors";
 import { MarimoErrorOutput } from "../../output/MarimoErrorOutput";
@@ -48,6 +50,8 @@ vi.mock("@/components/editor/chrome/wrapper/useOpenAiAssistant", () => ({
 
 const CELL_ID = cellId("test-cell");
 const STABLE_ID = "stable/test" as StableSessionId;
+const attachmentsAtom = atom<Attachment[]>([]);
+
 const AGENT: Attachment = {
   id: "a1",
   kind: "agent",
@@ -93,6 +97,11 @@ function renderButton({
   const store = createStore();
   store.set(connectionAtom, { state: ConnectionState.OPEN });
   store.set(pairConfigAtom, { ...PAIR_CONFIG, hostEnabled: preview });
+  store.set(notebookClientAtom, {
+    ...createNotebookClient(store).client,
+    connectionAtom: atom({ state: ConnectionState.OPEN }),
+    attachmentsAtom,
+  });
   store.set(attachmentsAtom, attachments);
   store.set(stableSessionIdAtom, stableId);
   const wrapper = ({ children }: { children: React.ReactNode }) => (
@@ -177,26 +186,6 @@ describe("SendErrorReportButton", () => {
     expect(screen.getByRole("button")).toBeDisabled();
   });
 
-  it.each([
-    { state: ConnectionState.CONNECTING },
-    { state: ConnectionState.CLOSING },
-    { state: ConnectionState.NOT_STARTED },
-    {
-      state: ConnectionState.CLOSED,
-      code: WebSocketClosedReason.KERNEL_DISCONNECTED,
-      reason: "offline",
-    },
-  ])(
-    "does not send from a stale snapshot while the browser is %j",
-    (connection) => {
-      const { store } = renderButton();
-      act(() => store.set(connectionAtom, connection));
-      expect(screen.getByRole("button")).toBeDisabled();
-      send();
-      expect(API.post).not.toHaveBeenCalled();
-    },
-  );
-
   it.each([
     [new HTTPError(409, "Conflict"), "No agent attached"],
     [new HTTPError(500, "Server error"), "Could not send error"],

package/src/components/editor/file-tree/__tests__/file-explorer-interactions.test.tsx

@@ -137,5 +137,11 @@ describe("FileExplorer upload destination", () => {
       }),
     ).toBeVisible();
     expect(screen.queryByText(".hidden")).not.toBeInTheDocument();
+
+    fireEvent.click(screen.getByTestId("file-explorer-hidden-files-button"));
+    expect(await screen.findByText(".hidden")).toBeVisible();
+    expect(
+      screen.getByRole("button", { name: "Upload files to workspace" }),
+    ).toBeVisible();
   });
 });

package/src/components/editor/file-tree/__tests__/use-file-search.test.tsx

@@ -0,0 +1,91 @@
+/* Copyright 2026 Marimo. All rights reserved. */
+
+import { act, renderHook, waitFor } from "@testing-library/react";
+import { beforeEach, describe, expect, it, vi } from "vitest";
+import type { EditRequests } from "@/core/network/types";
+import { Deferred } from "@/utils/Deferred";
+import { RequestingTree } from "../requesting-tree";
+import { useFileSearch } from "../use-file-search";
+
+const sendSearchFiles = vi.hoisted(() =>
+  vi.fn<EditRequests["sendSearchFiles"]>(),
+);
+vi.mock("@/core/network/requests", () => ({
+  useRequestClient: () => ({ sendSearchFiles }),
+}));
+
+describe("useFileSearch", () => {
+  let tree: RequestingTree;
+
+  beforeEach(async () => {
+    sendSearchFiles.mockReset();
+    tree = new RequestingTree({
+      getRoots: vi.fn().mockResolvedValue({
+        roots: [{ path: "/root", name: "workspace", isPrimary: true }],
+      }),
+      listFiles: vi.fn().mockResolvedValue({ files: [], root: "/root" }),
+      createFileOrFolder: vi.fn(),
+      deleteFileOrFolder: vi.fn(),
+      copyFileOrFolder: vi.fn(),
+      renameFileOrFolder: vi.fn(),
+    });
+    await tree.initialize(() => undefined);
+  });
+
+  it("derives loading for a refetch and a changed hidden-file filter", async () => {
+    sendSearchFiles.mockResolvedValue({
+      files: [],
+      query: "file",
+      totalFound: 0,
+    });
+    const { result, rerender } = renderHook(
+      ({ showHiddenFiles }) =>
+        useFileSearch({ query: "file", tree, showHiddenFiles }),
+      { initialProps: { showHiddenFiles: false } },
+    );
+    await waitFor(() => expect(result.current.state.status).toBe("success"));
+
+    const pending = new Deferred<
+      Awaited<ReturnType<EditRequests["sendSearchFiles"]>>
+    >();
+    sendSearchFiles.mockReturnValue(pending.promise);
+    act(() => result.current.refetch());
+    expect(result.current.state.status).toBe("loading");
+    await act(async () =>
+      pending.resolve({ files: [], query: "file", totalFound: 0 }),
+    );
+    expect(result.current.state.status).toBe("success");
+
+    sendSearchFiles.mockReturnValue(new Promise(() => undefined));
+    rerender({ showHiddenFiles: true });
+    expect(result.current.state.status).toBe("loading");
+    await waitFor(() =>
+      expect(sendSearchFiles).toHaveBeenLastCalledWith(
+        expect.objectContaining({ includeHidden: true }),
+      ),
+    );
+  });
+
+  it("keeps superseded scans serial and ignores their results", async () => {
+    const first = new Deferred<
+      Awaited<ReturnType<EditRequests["sendSearchFiles"]>>
+    >();
+    sendSearchFiles
+      .mockReturnValueOnce(first.promise)
+      .mockResolvedValue({ files: [], query: "file", totalFound: 0 });
+    const { result } = renderHook(() =>
+      useFileSearch({ query: "file", tree, showHiddenFiles: false }),
+    );
+    await waitFor(() => expect(sendSearchFiles).toHaveBeenCalledOnce());
+
+    act(() => result.current.refetch());
+    expect(sendSearchFiles).toHaveBeenCalledOnce();
+    expect(result.current.state.status).toBe("loading");
+    await act(async () =>
+      first.resolve({ files: [], query: "file", totalFound: 0 }),
+    );
+
+    expect(sendSearchFiles).toHaveBeenCalledTimes(2);
+    expect(result.current.state.status).toBe("success");
+  });
+});

package/src/components/editor/file-tree/file-explorer.tsx

@@ -201,11 +201,16 @@ export const FileExplorer: React.FC<{
     () => filterHiddenTree(data, showHiddenFiles),
     [data, showHiddenFiles],
   );
-  React.useEffect(() => {
-    if (selectedFolder && !treeContainsId(visibleData, selectedFolder.id)) {
-      setSelectedFolder(null);
-    }
-  }, [selectedFolder, visibleData]);
+  const selectedFolderId = selectedFolder?.id;
+  const selectedFolderVisible = React.useMemo(
+    () =>
+      selectedFolderId === undefined ||
+      treeContainsId(visibleData, selectedFolderId),
+    [visibleData, selectedFolderId],
+  );
+  if (!selectedFolderVisible) {
+    setSelectedFolder(null);
+  }
   const contextValue = React.useMemo<FileExplorerContextValue>(
     () => ({
       tree,

package/src/components/editor/file-tree/file-viewer.tsx

@@ -9,7 +9,7 @@ import {
   SaveIcon,
 } from "lucide-react";
 import type React from "react";
-import { useEffect, useRef, useState } from "react";
+import { useEffect, useLayoutEffect, useRef, useState } from "react";
 import { renderShortcut } from "@/components/shortcuts/renderShortcut";
 import { Alert, AlertDescription } from "@/components/ui/alert";
 import { Button } from "@/components/ui/button";
@@ -82,7 +82,9 @@ export const FileViewer: React.FC<Props> = ({ file, onOpenNotebook }) => {
   // carry no draft to preserve.
   // We use a ref for internalValue so we don't call this effect on each keystroke
   const internalValueRef = useRef<string>(internalValue);
-  internalValueRef.current = internalValue;
+  useLayoutEffect(() => {
+    internalValueRef.current = internalValue;
+  }, [internalValue]);
   useEffect(() => {
     return () => {
       if (