@marifold/core 0.67.0 → 0.70.5

package/dist/runs/RunRegistry.d.ts

@@ -1,3 +1,5 @@
+import type { AgentRunOptions } from '../agent/AgentRunner';
+import type { WorkspaceExecutionContext } from '@marifold/workspace-protocol';
 import type { ImageInput } from '@priest-ai/core';
 import { AgentEvent, AgentUsage } from '../agent/AgentEvents';
 import { AgentRunner } from '../agent/AgentRunner';
@@ -9,12 +11,20 @@ import { type UserInputRequest } from '../agent/UserInput';
 /** The narrow runtime slice the registry needs, so tests can fake it without a
  * full MarifoldRuntime. `MarifoldRuntime.createRunRegistry()` binds the real one. */
 export interface RunRegistryRuntime {
-    createAgentRunner(profile?: string): AgentRunner;
+    createAgentRunner(profile?: string, input?: RunStartInput): AgentRunner | Promise<AgentRunner>;
     setProfileAgentApproval(profile: string, kind: ToolKind, mode: ApprovalMode): void;
     addProfileTrustedFolder(profile: string, folder: string): string;
     defaultProfile(): string;
 }
+export interface RunJournal {
+    load(): Array<{
+        record: RunRecord;
+        events: SequencedEvent[];
+    }>;
+    save(record: RunRecord, event?: SequencedEvent): void;
+}
 export interface RunRegistryOptions {
+    journal?: RunJournal;
     runtime: RunRegistryRuntime;
     /** How long an approval prompt waits for an answer before auto-denying.
      * Matches the Telegram bridge's five-minute window by default. */
@@ -34,6 +44,11 @@ export interface RunRegistryOptions {
 /** What a client may pass when starting a run. Mirrors the AgentRunOptions
  * surface that is safe to accept over the service boundary. */
 export interface RunStartInput {
+    /** Internal coordinator fields; the public request parser never accepts these. */
+    registryRunId?: string;
+    parentRunId?: string;
+    /** Set by the authenticated service boundary, never trusted from request JSON. */
+    execution?: WorkspaceExecutionContext;
     objective: string;
     profile?: string;
     provider?: string;
@@ -52,6 +67,7 @@ export interface RunStartInput {
     /** Binary files staged read-only inside this run's isolated input folder. */
     files?: RunFileInput[];
     instructions?: string[];
+    toolMode?: AgentRunOptions['toolMode'];
     maxIterations?: number;
     forcePlan?: boolean;
     lean?: boolean;
@@ -60,6 +76,8 @@ export interface RunStartInput {
 /** Snapshot view of a run for list/get responses. `status` is the TaskStatus
  * verbatim — `running` until the terminal `done` event lands. */
 export interface RunRecord {
+    parentRunId?: string;
+    execution?: WorkspaceExecutionContext;
     id: string;
     objective: string;
     profile: string;
@@ -100,9 +118,17 @@ export declare class RunRegistry {
     private readonly maxActiveRuns;
     private readonly maxBufferedEvents;
     private readonly log?;
+    private listeners;
+    subscribe(listener: () => void): () => void;
     private closed;
+    private readonly journal?;
     constructor(options: RunRegistryOptions);
     start(input: RunStartInput): RunRecord;
+    startChild(parentRunId: string, input: RunStartInput): RunRecord;
+    artifactOrigin(runId: string, artifactId: string): {
+        run: RunRecord;
+        artifactId: string;
+    };
     get(runId: string): RunRecord | undefined;
     require(runId: string): RunRecord;
     list(): RunRecord[];

package/dist/runs/RunRegistry.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"RunRegistry.d.ts","sourceRoot":"","sources":["../../src/runs/RunRegistry.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AAC5D,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,8BAA8B,CAAC;AAG9E,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAClD,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AAC9D,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AACnD,OAAO,EAAoB,YAAY,EAAE,eAAe,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AAEpG,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAC;AAE1D,OAAO,KAAK,EAAE,mBAAmB,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AAG9E,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAChD,OAAO,EAEL,KAAK,gBAAgB,EAEtB,MAAM,oBAAoB,CAAC;AAS5B;qFACqF;AACrF,MAAM,WAAW,kBAAkB;IACjC,iBAAiB,CAAC,OAAO,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,aAAa,GAAG,WAAW,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;IAC/F,uBAAuB,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,YAAY,GAAG,IAAI,CAAC;IACnF,uBAAuB,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IACjE,cAAc,IAAI,MAAM,CAAC;CAC1B;AAED,MAAM,WAAW,UAAU;IAAG,IAAI,IAAI,KAAK,CAAC;QAAE,MAAM,EAAE,SAAS,CAAC;QAAC,MAAM,EAAE,cAAc,EAAE,CAAA;KAAE,CAAC,CAAC;IAAC,IAAI,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,cAAc,GAAG,IAAI,CAAA;CAAE;AAErJ,MAAM,WAAW,kBAAkB;IACjC,OAAO,CAAC,EAAE,UAAU,CAAC;IACrB,OAAO,EAAE,kBAAkB,CAAC;IAC5B;sEACkE;IAClE,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B;+CAC2C;IAC3C,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B;oDACgD;IAChD,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB;8CAC0C;IAC1C,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,GAAG,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAC;CACjC;AAED;+DAC+D;AAC/D,MAAM,WAAW,aAAa;IAC5B,kFAAkF;IAClF,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,kFAAkF;IAClF,SAAS,CAAC,EAAE,yBAAyB,CAAC;IACtC,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB;uBACmB;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,mEAAmE;IACnE,oBAAoB,CAAC,EAAE,MAAM,CAAC;IAC9B,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,sEAAsE;IACtE,MAAM,CAAC,EAAE,UAAU,EAAE,CAAC;IACtB,qEAAqE;IACrE,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,6EAA6E;IAC7E,KAAK,CAAC,EAAE,YAAY,EAAE,CAAC;IACvB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,QAAQ,CAAC,EAAE,eAAe,CAAC,UAAU,CAAC,CAAC;IACvC,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED;iEACiE;AACjE,MAAM,WAAW,SAAS;IACxB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,SAAS,CAAC,EAAE,yBAAyB,CAAC;IACtC,EAAE,EAAE,MAAM,CAAC;IACX,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,UAAU,CAAC;IACnB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAE,UAAU,CAAC;IACnB,kFAAkF;IAClF,SAAS,CAAC,EAAE,WAAW,EAAE,CAAC;IAC1B,mEAAmE;IACnE,UAAU,EAAE,MAAM,CAAC;IACnB,gBAAgB,EAAE,eAAe,EAAE,CAAC;IACpC,iBAAiB,EAAE,gBAAgB,EAAE,CAAC;CACvC;AAED,MAAM,WAAW,cAAc;IAC7B,GAAG,EAAE,MAAM,CAAC;IACZ,KAAK,EAAE,UAAU,CAAC;CACnB;AAED,MAAM,MAAM,iBAAiB,GAAG,MAAM,GAAG,QAAQ,GAAG,OAAO,GAAG,MAAM,CAAC;AAwCrE;;;;;;GAMG;AACH,qBAAa,WAAW;IACtB,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAgC;IACrD,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAsC;IAC9D,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAuC;IACzE,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAqB;IAC7C,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAS;IAC3C,OAAO,CAAC,QAAQ,CAAC,kBAAkB,CAAS;IAC5C,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAS;IAC1C,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAS;IACvC,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAS;IAC3C,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,CAA4B;IACjD,OAAO,CAAC,SAAS,CAAyB;IAC1C,SAAS,CAAC,QAAQ,EAAE,MAAM,IAAI,GAAG,MAAM,IAAI,CAAqF;IAChI,OAAO,CAAC,MAAM,CAAS;IACvB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAa;IAEtC,YAAY,OAAO,EAAE,kBAAkB,EAoBtC;IAED,KAAK,CAAC,KAAK,EAAE,aAAa,GAAG,SAAS,CAwCrC;IAED,UAAU,CAAC,WAAW,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,GAAG,SAAS,CAI/D;IAED,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG;QAAE,GAAG,EAAE,SAAS,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAOxF;IAED,GAAG,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,GAAG,SAAS,CAGxC;IAED,OAAO,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAIhC;IAED,IAAI,IAAI,SAAS,EAAE,CAKlB;IAED,eAAe,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,mBAAmB,CAKtE;IAED;;4EAEwE;IACjE,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,SAAI,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,cAAc,CAAC,cAAc,EAAE,IAAI,EAAE,OAAO,CAAC,CAa9G;IAED,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,iBAAiB,GAAG;QAAE,SAAS,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,OAAO,CAAA;KAAE,CA8CpH;IAED,eAAe,CACb,KAAK,EAAE,MAAM,EACb,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,OAAO,GACb;QAAE,SAAS,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,IAAI,CAAA;KAAE,CAUvC;IAED;uEACmE;IACnE,KAAK,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAKvC;IAED;+EAC2E;IAC3E,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,UAAU,CAMhC;IAED,KAAK,IAAI,IAAI,CAMZ;YAEa,IAAI;IA0ClB,OAAO,CAAC,MAAM;IAwBd,OAAO,CAAC,MAAM;IAwBd;;uEAEmE;IACnE,OAAO,CAAC,cAAc;IAgCtB,OAAO,CAAC,eAAe;IAsBvB,OAAO,CAAC,aAAa;IAYrB,OAAO,CAAC,MAAM;IAKd,OAAO,CAAC,aAAa;IAerB,OAAO,CAAC,QAAQ;IAyBhB,OAAO,CAAC,YAAY;IAIpB,OAAO,CAAC,WAAW;CAIpB"}

package/dist/runs/RunRegistry.js

@@ -65,8 +65,12 @@ class RunRegistry {
     maxActiveRuns;
     maxBufferedEvents;
     log;
+    listeners = new Set();
+    subscribe(listener) { this.listeners.add(listener); return () => { this.listeners.delete(listener); }; }
     closed = false;
+    journal;
     constructor(options) {
+        this.journal = options.journal;
         this.runtime = options.runtime;
         this.approvalTimeoutMs = options.approvalTimeoutMs ?? DEFAULT_APPROVAL_TIMEOUT_MS;
         this.userInputTimeoutMs = options.userInputTimeoutMs ?? DEFAULT_USER_INPUT_TIMEOUT_MS;
@@ -74,6 +78,21 @@ class RunRegistry {
         this.maxActiveRuns = options.maxActiveRuns ?? DEFAULT_MAX_ACTIVE_RUNS;
         this.maxBufferedEvents = options.maxBufferedEvents ?? DEFAULT_MAX_BUFFERED_EVENTS;
         this.log = options.log;
+        for (const { record, events } of this.journal?.load() ?? []) {
+            const interrupted = !record.finishedAt;
+            const run = { ...record, artifacts: record.artifacts ?? [], status: interrupted ? 'failed' : record.status,
+                summary: interrupted ? 'Interrupted by host restart. Completed effects were not replayed.' : record.summary,
+                finishedAt: record.finishedAt ?? new Date().toISOString(), finished: true,
+                buffer: events, firstSeq: events[0]?.seq ?? record.eventCount + 1, lastSeq: record.eventCount,
+                abort: new AbortController(), steeringQueue: [], grantedKinds: new Set(), trustedFolders: [], waiters: [],
+            };
+            if (interrupted) {
+                const event = { seq: ++run.lastSeq, event: { type: 'done', taskId: record.taskId ?? '', status: 'failed', summary: run.summary } };
+                run.buffer.push(event);
+                this.journal?.save(this.toRecord(run), event);
+            }
+            this.runs.set(run.id, run);
+        }
     }
     start(input) {
         if (this.closed)
@@ -83,8 +102,15 @@ class RunRegistry {
         if (active >= this.maxActiveRuns)
             throw MarifoldError_1.MarifoldError.runLimitExceeded(this.maxActiveRuns);
         const profile = input.profile ?? this.runtime.defaultProfile();
+        if (input.sessionId) {
+            const owner = [...this.runs.values()].find(run => !run.finished && run.sessionId === input.sessionId);
+            if (owner)
+                throw new MarifoldError_1.MarifoldError('SESSION_BUSY', `Session is already running on ${owner.id}.`, { runId: owner.id, sessionId: input.sessionId });
+        }
         const run = {
             id: this.createRunId(),
+            execution: input.execution,
+            parentRunId: input.parentRunId,
             objective: input.objective,
             profile,
             status: 'running',
@@ -102,6 +128,7 @@ class RunRegistry {
             waiters: [],
         };
         this.runs.set(run.id, run);
+        this.journal?.save(this.toRecord(run));
         // Detached pump: consume the run generator without blocking the caller,
         // the same detachment the Telegram bridge uses so an approval answer
         // arriving on a later request cannot deadlock the run.
@@ -110,6 +137,24 @@ class RunRegistry {
         });
         return this.toRecord(run);
     }
+    startChild(parentRunId, input) {
+        const parent = this.runs.get(parentRunId);
+        if (!parent || parent.finished || parent.parentRunId || !parent.execution || input.execution?.workspaceId !== parent.execution.workspaceId)
+            throw MarifoldError_1.MarifoldError.agentRunInvalid('Device delegation is limited to one level within the active workspace.');
+        return this.start({ ...input, sessionId: undefined, parentRunId });
+    }
+    artifactOrigin(runId, artifactId) {
+        const run = this.require(runId);
+        const artifact = run.artifacts?.find(a => a.id === artifactId);
+        if (!artifact)
+            throw MarifoldError_1.MarifoldError.artifactNotFound(runId, artifactId);
+        if (!artifact.source)
+            return { run, artifactId };
+        const child = this.require(artifact.source.runId);
+        if (child.parentRunId !== run.id || child.execution?.workspaceId !== run.execution?.workspaceId)
+            throw MarifoldError_1.MarifoldError.artifactNotFound(runId, artifactId);
+        return { run: child, artifactId: artifact.source.artifactId };
+    }
     get(runId) {
         const run = this.runs.get(runId);
         return run ? this.toRecord(run) : undefined;
@@ -127,13 +172,8 @@ class RunRegistry {
             .map(run => this.toRecord(run));
     }
     requireArtifact(runId, artifactId) {
-        const run = this.runs.get(runId);
-        if (!run)
-            throw MarifoldError_1.MarifoldError.runNotFound(runId);
-        if (!run.artifacts.some(artifact => artifact.id === artifactId)) {
-            throw MarifoldError_1.MarifoldError.artifactNotFound(runId, artifactId);
-        }
-        const artifact = (0, RunArtifacts_1.resolveRunArtifact)(runId, artifactId);
+        const source = this.artifactOrigin(runId, artifactId);
+        const artifact = (0, RunArtifacts_1.resolveRunArtifact)(source.run.id, source.artifactId);
         if (!artifact)
             throw MarifoldError_1.MarifoldError.artifactNotFound(runId, artifactId);
         return artifact;
@@ -159,12 +199,14 @@ class RunRegistry {
         }
     }
     answerApproval(runId, requestId, action) {
-        const run = this.runs.get(runId);
+        let run = this.runs.get(runId);
         if (!run)
             throw MarifoldError_1.MarifoldError.runNotFound(runId);
-        const entry = this.pending.get(requestId);
-        if (!entry || entry.runId !== runId)
+        const entry = this.pending.get(this.userInputKey(runId, requestId))
+            ?? [...this.pending.values()].find(p => p.request.id === requestId && this.runs.get(p.runId)?.parentRunId === runId);
+        if (!entry || (entry.runId !== runId && this.runs.get(entry.runId)?.parentRunId !== runId))
             throw MarifoldError_1.MarifoldError.approvalNotFound(requestId);
+        run = this.runs.get(entry.runId);
         switch (action) {
             case 'deny':
                 entry.settle({ approved: false, reason: 'denied via service' });
@@ -211,9 +253,14 @@ class RunRegistry {
         const run = this.runs.get(runId);
         if (!run)
             throw MarifoldError_1.MarifoldError.runNotFound(runId);
-        const entry = this.pendingUserInputs.get(this.userInputKey(runId, requestId));
+        const entry = this.pendingUserInputs.get(this.userInputKey(runId, requestId))
+            ?? [...this.pendingUserInputs.values()].find(p => p.request.id === requestId && this.runs.get(p.runId)?.parentRunId === runId);
         if (!entry)
             throw MarifoldError_1.MarifoldError.userInputNotFound(requestId);
+        if (typeof value === 'object' && value !== null && 'skipped' in value && value.skipped === true && Object.keys(value).length === 1) {
+            entry.settle(undefined);
+            return { requestId, accepted: true };
+        }
         const submission = (0, UserInput_1.normalizeUserInputSubmission)(entry.request, value);
         entry.settle(submission);
         return { requestId, accepted: true };
@@ -236,6 +283,9 @@ class RunRegistry {
             throw MarifoldError_1.MarifoldError.runNotFound(runId);
         if (!run.finished)
             run.abort.abort();
+        for (const child of this.runs.values())
+            if (child.parentRunId === runId && !child.finished)
+                child.abort.abort();
         return run.status;
     }
     close() {
@@ -249,7 +299,7 @@ class RunRegistry {
     }
     async pump(run, input) {
         try {
-            const runner = this.runtime.createAgentRunner(input.profile);
+            const runner = await this.runtime.createAgentRunner(input.profile, { ...input, registryRunId: run.id });
             const events = runner.run({
                 objective: input.objective,
                 profile: input.profile,
@@ -264,6 +314,7 @@ class RunRegistry {
                 files: input.files,
                 instructions: input.instructions,
                 maxIterations: input.maxIterations,
+                toolMode: input.toolMode,
                 forcePlan: input.forcePlan,
                 lean: input.lean,
                 cwd: input.cwd,
@@ -313,6 +364,7 @@ class RunRegistry {
         else if (event.type === 'status') {
             run.status = event.status;
         }
+        this.journal?.save(this.toRecord(run), run.buffer[run.buffer.length - 1]);
         this.notify(run);
     }
     finish(run, status) {
@@ -361,14 +413,14 @@ class RunRegistry {
             const settle = (decision) => {
                 clearTimeout(timer);
                 run.abort.signal.removeEventListener('abort', onAbort);
-                this.pending.delete(request.id);
+                this.pending.delete(this.userInputKey(run.id, request.id));
                 this.notify(run);
                 resolve(decision);
             };
             // Cancel must unblock the runner's `await approvalHandler(...)` at once,
             // not after the timeout, so the loop can observe the abort and finish.
             run.abort.signal.addEventListener('abort', onAbort, { once: true });
-            this.pending.set(request.id, { runId: run.id, request, settle });
+            this.pending.set(this.userInputKey(run.id, request.id), { runId: run.id, request, settle });
             this.notify(run);
         });
     }
@@ -394,6 +446,9 @@ class RunRegistry {
         return new Promise(resolve => {
             const waiter = () => {
                 signal?.removeEventListener('abort', waiter);
+                const index = run.waiters.indexOf(waiter);
+                if (index >= 0)
+                    run.waiters.splice(index, 1);
                 resolve();
             };
             run.waiters.push(waiter);
@@ -401,6 +456,8 @@ class RunRegistry {
         });
     }
     notify(run) {
+        for (const listener of this.listeners)
+            listener();
         for (const waiter of run.waiters.splice(0))
             waiter();
     }
@@ -422,6 +479,8 @@ class RunRegistry {
     toRecord(run) {
         return {
             id: run.id,
+            execution: run.execution,
+            parentRunId: run.parentRunId,
             objective: run.objective,
             profile: run.profile,
             status: run.status,
@@ -434,10 +493,10 @@ class RunRegistry {
             artifacts: [...run.artifacts],
             eventCount: run.lastSeq,
             pendingApprovals: [...this.pending.values()]
-                .filter(entry => entry.runId === run.id)
+                .filter(entry => entry.runId === run.id || this.runs.get(entry.runId)?.parentRunId === run.id)
                 .map(entry => entry.request),
             pendingUserInputs: [...this.pendingUserInputs.values()]
-                .filter(entry => entry.runId === run.id)
+                .filter(entry => entry.runId === run.id || this.runs.get(entry.runId)?.parentRunId === run.id)
                 .map(entry => entry.request),
         };
     }

package/dist/runs/RunRegistry.js.map

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package/dist/runtime/MarifoldRuntime.d.ts

@@ -1,3 +1,5 @@
+import type { AgentRunnerDeps } from '../agent/AgentRunner';
+import type { RunStartInput, RunJournal } from '../runs/RunRegistry';
 import { UsageInfo } from '@priest-ai/core';
 import { AgentRunner } from '../agent/AgentRunner';
 import { ApprovalMode, MarifoldAgentConfig, ToolKind } from '../agent/ApprovalPolicy';
@@ -7,7 +9,7 @@ import { LoadedMarifoldConfig, ProfileDetail, ProfileMode, ProfileSummary, Provi
 import type { ProviderModelList, ProviderStatus } from '../config/ProviderInspector';
 import { SearchBackend } from '../search/SearchBackend';
 import type { MemoryEntry, MemoryKind, MemoryMutationResult, MemoryRememberResult, MemoryScaffoldFile } from '../memory/MemoryStore';
-import type { ProfileFileKind } from '../profiles/ProfileManager';
+import type { ProfileFileKind, ProfileInstructionsMigrationResult } from '../profiles/ProfileManager';
 import { Scheduler } from '../schedule/Scheduler';
 import { RunRegistry } from '../runs/RunRegistry';
 import { TelegramBridge } from '../channels/TelegramBridge';
@@ -80,8 +82,10 @@ export declare class MarifoldRuntime {
     setProfileThink(name: string, think: boolean | undefined): void;
     /** Persist a profile's recent-turn window ('all'/undefined clears the key). */
     setProfileSessionContextTurns(name: string, turns: number | 'all' | undefined): void;
-    /** Overwrite one of a profile's markdown files (PROFILE/RULES/CUSTOM.md). */
+    /** Overwrite the canonical profile instructions or a deprecated split-file alias. */
     writeProfileFile(name: string, file: ProfileFileKind, content: string): void;
+    /** Consolidate a stored profile's legacy split instructions with backup. */
+    migrateProfileInstructions(name: string): ProfileInstructionsMigrationResult;
     /** Scaffold a new profile directory (same layout as `profile init`) and
      * return its detail. Duplicate or invalid names throw PROFILE_INVALID. */
     initProfile(name: string): ProfileDetail;
@@ -175,12 +179,17 @@ export declare class MarifoldRuntime {
      */
     resolveAgentConfigForProfile(profile?: string): MarifoldAgentConfig;
     createAgentRunner(profile?: string, registry?: ToolRegistry, agentConfigOverride?: MarifoldAgentConfig, runtimeOptions?: {
+        createWorkspace?: AgentRunnerDeps['createWorkspace'];
+        listArtifacts?: AgentRunnerDeps['listArtifacts'];
+        deviceInstructions?: string;
+        contextInstructions?: string[];
         webSearch?: boolean;
         readOnlyFolders?: string[];
         readOnlyFiles?: string[];
         allowExternalReadOnlyFolders?: boolean;
     }): AgentRunner;
-    private createDefaultToolRegistry;
+    createHostContextTools(profile?: string): ToolRegistry;
+    createDefaultToolRegistry(profile?: string): ToolRegistry;
     /**
      * Skill store over the shared skills dir ([paths].skills_dir) and the given
      * profile's skills/ dir (profile skills shadow global ones). Defaults to the
@@ -222,7 +231,7 @@ export declare class MarifoldRuntime {
     createTelegramBridge(log?: (message: string) => void): TelegramBridge | undefined;
     /** Live run-session registry for the service process: start/attach/approve/
      * steer/cancel agent runs across separate requests. Call close() on shutdown. */
-    createRunRegistry(log?: (message: string) => void): RunRegistry;
+    createRunRegistry(log?: (message: string) => void, runnerForRun?: (input: RunStartInput) => AgentRunner | Promise<AgentRunner>, journal?: RunJournal): RunRegistry;
     private runScheduledAgent;
     createTask(input: TaskCreateInput): TaskState;
     listTasks(options?: TaskListOptions): TaskSummary[];

package/dist/runtime/MarifoldRuntime.d.ts.map

@@ -1 +1 @@
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package/dist/runtime/MarifoldRuntime.js

@@ -507,10 +507,14 @@ class MarifoldRuntime {
     setProfileSessionContextTurns(name, turns) {
         this.profileManager.setSessionContextTurns(name, turns);
     }
-    /** Overwrite one of a profile's markdown files (PROFILE/RULES/CUSTOM.md). */
+    /** Overwrite the canonical profile instructions or a deprecated split-file alias. */
     writeProfileFile(name, file, content) {
         this.profileManager.writeProfileFile(name, file, content);
     }
+    /** Consolidate a stored profile's legacy split instructions with backup. */
+    migrateProfileInstructions(name) {
+        return this.profileManager.migrateProfileInstructions(name);
+    }
     /** Scaffold a new profile directory (same layout as `profile init`) and
      * return its detail. Duplicate or invalid names throw PROFILE_INVALID. */
     initProfile(name) {
@@ -675,6 +679,10 @@ class MarifoldRuntime {
     }
     createAgentRunner(profile, registry, agentConfigOverride, runtimeOptions = {}) {
         return new AgentRunner_1.AgentRunner({
+            deniedRoots: [path.join(path.dirname(this.options.loadedConfig.configPath), 'workspaces')],
+            contextInstructions: runtimeOptions.contextInstructions,
+            createWorkspace: runtimeOptions.createWorkspace,
+            listArtifacts: runtimeOptions.listArtifacts,
             taskStore: this.taskStore,
             registry: registry ?? this.createDefaultToolRegistry(profile),
             agentConfig: agentConfigOverride ?? this.resolveAgentConfigForProfile(profile),
@@ -716,6 +724,8 @@ class MarifoldRuntime {
                 .filter(t => t.role === 'user' || t.role === 'assistant')
                 .map(t => ({ role: t.role, content: t.content })),
             resolveBuiltInInstructions: (objective, resolvedProfile) => {
+                if (runtimeOptions.deviceInstructions)
+                    return [runtimeOptions.deviceInstructions];
                 const { config } = this.options.loadedConfig;
                 if ((0, BuiltInSkillAppBuilder_1.mentionsSkillApps)(objective)) {
                     return [(0, BuiltInSkillAppBuilder_1.buildSkillAppBuilderGuide)({
@@ -744,6 +754,14 @@ class MarifoldRuntime {
             allowExternalReadOnlyFolders: runtimeOptions.allowExternalReadOnlyFolders,
         });
     }
+    createHostContextTools(profile) {
+        const registry = new ToolRegistry_1.ToolRegistry();
+        for (const tool of this.createDefaultToolRegistry(profile).list()) {
+            if (tool.kind === 'interaction' || ['web_search', 'delegate'].includes(tool.definition.name))
+                registry.register(tool);
+        }
+        return registry;
+    }
     createDefaultToolRegistry(profile) {
         const registry = new ToolRegistry_1.ToolRegistry();
         const { config } = this.options.loadedConfig;
@@ -761,6 +779,8 @@ class MarifoldRuntime {
             profile: resolvedProfile,
             globalDir: config.paths.skillsDir ?? (0, WorkspacePaths_1.defaultSkillsDir)(),
             profileDir: path.join(config.paths.profilesDir, resolvedProfile, 'skills'),
+            profilesDir: config.paths.profilesDir,
+            profileExists: profileName => this.listProfiles().some(candidate => candidate.name === profileName),
         }));
         registry.register(new SkillAppTools_1.SkillAppContextTool({
             activeProfile: resolvedProfile,
@@ -877,7 +897,9 @@ class MarifoldRuntime {
                     ...operation.instructions,
                     ...(historyContext ? [historyContext] : []),
                 ];
-                const mode = operation.mode ?? settings.mode;
+                // Profile-backed App operations default to the product's single Agent
+                // path. An explicitly chat-mode Skill still uses the retained transport.
+                const mode = operation.mode ?? 'agent';
                 if (declaredOperation.interactive && mode !== 'agent') {
                     throw MarifoldError_1.MarifoldError.appInvalid(`Interactive SkillApp operation '${operationName}' must invoke an Agent Skill.`);
                 }
@@ -1139,10 +1161,11 @@ class MarifoldRuntime {
     }
     /** Live run-session registry for the service process: start/attach/approve/
      * steer/cancel agent runs across separate requests. Call close() on shutdown. */
-    createRunRegistry(log) {
+    createRunRegistry(log, runnerForRun, journal) {
         return new RunRegistry_1.RunRegistry({
+            journal,
             runtime: {
-                createAgentRunner: profile => this.createAgentRunner(profile),
+                createAgentRunner: (profile, input) => runnerForRun && input ? runnerForRun(input) : this.createAgentRunner(profile),
                 setProfileAgentApproval: (profile, kind, mode) => {
                     this.setProfileAgentApproval(profile, kind, mode);
                 },
@@ -1336,9 +1359,15 @@ class MarifoldRuntime {
                     enabled: settings.think,
                     ...(settings.think ? { effort: 'high', summary: 'auto' } : {}),
                 }
-                : neutralReasoning && settings.think
-                    ? { enabled: true, effort: 'high', summary: 'auto' }
-                    : undefined,
+                : neutralReasoning && /^gpt-6-astra(?:-|$)/.test(settings.model)
+                    ? {
+                        enabled: true,
+                        effort: settings.think ? 'medium' : 'low',
+                        ...(settings.think ? { summary: 'auto' } : {}),
+                    }
+                    : neutralReasoning && settings.think
+                        ? { enabled: true, effort: 'high', summary: 'auto' }
+                        : undefined,
             providerOptions: Object.keys(providerOptions).length > 0 ? providerOptions : undefined,
         };
     }