@mapequation/infomap 2.10.0 → 2.11.0

package/react.js.map

@@ -1 +1 @@
-{"version":3,"file":"react.js","sources":["../../../interfaces/js/src/react-args.ts","../../../interfaces/js/src/react.ts"],"sourcesContent":[null,null],"names":[],"mappings":";;;;;;AAKM,SAAU,gBAAgB,CAC9B,MAAiB,EACjB,IAAgB,EAAA;IAEhB,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,MAAM,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE;AAE/C,IAAA,IAAI,OAAO,KAAK,CAAC,IAAI,KAAK,QAAQ,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE;AAC9D,QAAA,KAAK,CAAC,IAAI,GAAG,EAAE,GAAG,IAAI,EAAE,GAAG,KAAK,CAAC,IAAI,EAAE;IACzC;AAAO,SAAA,IAAI,IAAI,KAAK,SAAS,EAAE;AAC7B,QAAA,KAAK,CAAC,IAAI,GAAG,IAAI;IACnB;IAEA,OAAO,CAAC,KAAK,CAAC;AAChB;;ACbM,SAAU,UAAU,CAAC,IAAgB,EAAA;IACzC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC;IAC3C,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC;IAC7C,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,CAAC,MAAM,IAAI,OAAO,EAAE,CAAC,EAAE,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;IAE3E,MAAM,GAAG,GAAG,WAAW,CACrB,CAAC,GAAG,MAAkC,KAAI;QACxC,UAAU,CAAC,IAAI,CAAC;QAChB,WAAW,CAAC,CAAC,CAAC;QACd,OAAO,CAAC,GAAG,CAAC,GAAG,gBAAgB,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;QAC9C,UAAU,CAAC,KAAK,CAAC;AACnB,IAAA,CAAC,EACD,CAAC,OAAO,EAAE,IAAI,CAAC,CAChB;IAED,MAAM,QAAQ,GAAG,WAAW,CAC1B,CAAC,GAAG,MAAuC,KAAI;QAC7C,UAAU,CAAC,IAAI,CAAC;QAChB,WAAW,CAAC,CAAC,CAAC;AACd,QAAA,OAAO;aACJ,QAAQ,CAAC,GAAG,gBAAgB,CAAC,MAAM,EAAE,IAAI,CAAC;AAC1C,aAAA,IAAI,CAAC,CAAC,MAAM,KAAI;YACf,UAAU,CAAC,KAAK,CAAC;AACjB,YAAA,OAAO,MAAM;AACf,QAAA,CAAC;AACA,aAAA,KAAK,CAAC,CAAC,KAAK,KAAI;YACf,UAAU,CAAC,KAAK,CAAC;AACjB,YAAA,MAAM,KAAK;AACb,QAAA,CAAC,CAAC;AACN,IAAA,CAAC,EACD,CAAC,OAAO,EAAE,IAAI,CAAC,CAChB;IAED,aAAa,CAAC,OAAO,GAAG,SAAS,GAAG,SAAS,CAAC;IAE9C,OAAO;QACL,OAAO;QACP,QAAQ;QACR,OAAO;QACP,GAAG;QACH,QAAQ;QACR,EAAE,CAAC,GAAG,MAAiC,EAAA;AACrC,YAAA,OAAO,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC;AACrB,YAAA,OAAO,IAAI;QACb;KACD;AACH;;;;"}
+{"version":3,"file":"react.js","sources":["../../../interfaces/js/src/react-args.ts","../../../interfaces/js/src/react.ts"],"sourcesContent":[null,null],"names":[],"mappings":";;;;;;;AAKM,SAAU,gBAAgB,CAC9B,MAAiB,EACjB,IAAgB,EAAA;IAEhB,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,MAAM,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE;AAE/C,IAAA,IAAI,OAAO,KAAK,CAAC,IAAI,KAAK,QAAQ,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE;AAC9D,QAAA,KAAK,CAAC,IAAI,GAAG,EAAE,GAAG,IAAI,EAAE,GAAG,KAAK,CAAC,IAAI,EAAE;IACzC;AAAO,SAAA,IAAI,IAAI,KAAK,SAAS,EAAE;AAC7B,QAAA,KAAK,CAAC,IAAI,GAAG,IAAI;IACnB;IAEA,OAAO,CAAC,KAAK,CAAC;AAChB;;ACAA,SAAS,kBAAkB,CAAC,QAAoB,EAAA;IAC9C,IAAI,OAAO,MAAM,KAAK,WAAW,IAAI,MAAM,CAAC,qBAAqB,EAAE;AACjE,QAAA,OAAO,MAAM,CAAC,qBAAqB,CAAC,QAAQ,CAAC;IAC/C;IAEA,OAAO,UAAU,CAAC,UAAU,CAAC,QAAQ,EAAE,CAAC,CAAC;AAC3C;AAIA,SAAS,iBAAiB,CAAC,EAAqB,EAAA;IAC9C,IAAI,OAAO,MAAM,KAAK,WAAW,IAAI,MAAM,CAAC,oBAAoB,EAAE;AAChE,QAAA,MAAM,CAAC,oBAAoB,CAAC,EAAY,CAAC;IAC3C;SAAO;AACL,QAAA,UAAU,CAAC,YAAY,CAAC,EAAmC,CAAC;IAC9D;AACF;SAEgB,UAAU,CAAC,IAAgB,EAAE,UAA6B,EAAE,EAAA;IAC1E,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC;IAC3C,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC;IAC7C,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAW,EAAE,CAAC;AAClD,IAAA,MAAM,YAAY,GAAG,MAAM,CAAiB,EAAE,CAAC;IAC/C,MAAM,SAAS,GAAG,MAAM,CAA6B,OAAO,CAAC,MAAM,CAAC;IACpE,MAAM,gBAAgB,GAAG,MAAM,CAAC,OAAO,CAAC,aAAa,IAAI,KAAK,CAAC;IAC/D,MAAM,mBAAmB,GAAG,MAAM,CAAC,OAAO,CAAC,gBAAgB,IAAI,IAAI,CAAC;AACpE,IAAA,MAAM,aAAa,GAAG,MAAM,CAAC,CAAC,CAAC;AAC/B,IAAA,MAAM,eAAe,GAAG,MAAM,CAAW,EAAE,CAAC;AAC5C,IAAA,MAAM,cAAc,GAAG,MAAM,CAA2B,IAAI,CAAC;AAE7D,IAAA,SAAS,CAAC,OAAO,GAAG,OAAO,CAAC,MAAM;IAClC,gBAAgB,CAAC,OAAO,GAAG,OAAO,CAAC,aAAa,IAAI,KAAK;IACzD,mBAAmB,CAAC,OAAO,GAAG,OAAO,CAAC,gBAAgB,IAAI,IAAI;AAE9D,IAAA,MAAM,WAAW,GAAG,WAAW,CAAC,MAAK;AACnC,QAAA,eAAe,CAAC,OAAO,GAAG,EAAE;AAC5B,QAAA,IAAI,cAAc,CAAC,OAAO,KAAK,IAAI,EAAE;AACnC,YAAA,iBAAiB,CAAC,cAAc,CAAC,OAAO,CAAC;AACzC,YAAA,cAAc,CAAC,OAAO,GAAG,IAAI;QAC/B;QACA,SAAS,CAAC,EAAE,CAAC;IACf,CAAC,EAAE,EAAE,CAAC;AAEN,IAAA,MAAM,WAAW,GAAG,WAAW,CAAC,MAAK;AACnC,QAAA,cAAc,CAAC,OAAO,GAAG,IAAI;AAC7B,QAAA,MAAM,QAAQ,GAAG,eAAe,CAAC,OAAO;AACxC,QAAA,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE;AAC3B,QAAA,eAAe,CAAC,OAAO,GAAG,EAAE;AAC5B,QAAA,SAAS,CAAC,CAAC,aAAa,KAAK,CAAC,GAAG,aAAa,EAAE,GAAG,QAAQ,CAAC,CAAC;IAC/D,CAAC,EAAE,EAAE,CAAC;AAEN,IAAA,MAAM,kBAAkB,GAAG,WAAW,CAAC,MAAK;AAC1C,QAAA,IAAI,cAAc,CAAC,OAAO,KAAK,IAAI,EAAE;AACnC,YAAA,iBAAiB,CAAC,cAAc,CAAC,OAAO,CAAC;AACzC,YAAA,cAAc,CAAC,OAAO,GAAG,IAAI;QAC/B;AACA,QAAA,MAAM,QAAQ,GAAG,eAAe,CAAC,OAAO;AACxC,QAAA,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE;AAC3B,QAAA,eAAe,CAAC,OAAO,GAAG,EAAE;AAC5B,QAAA,SAAS,CAAC,CAAC,aAAa,KAAK,CAAC,GAAG,aAAa,EAAE,GAAG,QAAQ,CAAC,CAAC;IAC/D,CAAC,EAAE,EAAE,CAAC;AAEN,IAAA,MAAM,WAAW,GAAG,WAAW,CAC7B,CAAC,IAAY,KAAI;QACf,IAAI,CAAC,gBAAgB,CAAC,OAAO;YAAE;AAC/B,QAAA,eAAe,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC;AAClC,QAAA,IAAI,cAAc,CAAC,OAAO,KAAK,IAAI;YAAE;AACrC,QAAA,cAAc,CAAC,OAAO,GAAG,kBAAkB,CAAC,WAAW,CAAC;AAC1D,IAAA,CAAC,EACD,CAAC,WAAW,CAAC,CACd;IAED,MAAM,YAAY,GAAG,WAAW,CAC9B,CACE,KAAY,EACZ,GAAG,MAAmD,KACpD;QACF,MAAM,aAAa,GAAG,SAAS,CAAC,OAAO,GAAG,KAAK,CAElC;QACb,MAAM,kBAAkB,GAAG,YAAY,CAAC,OAAO,CAAC,KAAK,CAExC;AAEb,QAAA,aAAa,GAAG,GAAG,MAAM,CAAC;AAC1B,QAAA,IAAI,kBAAkB,IAAI,kBAAkB,KAAK,aAAa,EAAE;AAC9D,YAAA,kBAAkB,CAAC,GAAG,MAAM,CAAC;QAC/B;IACF,CAAC,EACD,EAAE,CACH;AAED,IAAA,MAAM,QAAQ,GAAG,WAAW,CAAC,MAAK;AAChC,QAAA,aAAa,CAAC,OAAO,IAAI,CAAC;QAC1B,WAAW,CAAC,CAAC,CAAC;QACd,IAAI,gBAAgB,CAAC,OAAO,IAAI,mBAAmB,CAAC,OAAO,EAAE;AAC3D,YAAA,WAAW,EAAE;QACf;QACA,UAAU,CAAC,IAAI,CAAC;AAClB,IAAA,CAAC,EAAE,CAAC,WAAW,CAAC,CAAC;AAEjB,IAAA,MAAM,SAAS,GAAG,WAAW,CAAC,MAAK;AACjC,QAAA,aAAa,CAAC,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,aAAa,CAAC,OAAO,GAAG,CAAC,CAAC;AAC9D,QAAA,UAAU,CAAC,aAAa,CAAC,OAAO,GAAG,CAAC,CAAC;IACvC,CAAC,EAAE,EAAE,CAAC;IAEN,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,CAAC,MACzB,IAAI,OAAO;SACR,EAAE,CAAC,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE,KAAI;QACzB,WAAW,CAAC,MAAM,CAAC;AACnB,QAAA,YAAY,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC;AAClC,IAAA,CAAC;SACA,EAAE,CAAC,UAAU,EAAE,CAAC,eAAe,EAAE,EAAE,KAAI;QACtC,WAAW,CAAC,eAAe,CAAC;AAC5B,QAAA,YAAY,CAAC,UAAU,EAAE,eAAe,EAAE,EAAE,CAAC;AAC/C,IAAA,CAAC;SACA,EAAE,CAAC,OAAO,EAAE,CAAC,OAAO,EAAE,EAAE,KAAI;AAC3B,QAAA,kBAAkB,EAAE;AACpB,QAAA,SAAS,EAAE;AACX,QAAA,YAAY,CAAC,OAAO,EAAE,OAAO,EAAE,EAAE,CAAC;AACpC,IAAA,CAAC;SACA,EAAE,CAAC,UAAU,EAAE,CAAC,MAAM,EAAE,EAAE,KAAI;AAC7B,QAAA,kBAAkB,EAAE;AACpB,QAAA,SAAS,EAAE;AACX,QAAA,YAAY,CAAC,UAAU,EAAE,MAAM,EAAE,EAAE,CAAC;IACtC,CAAC,CAAC,CACL;AAED,IAAA,SAAS,CACP,MAAM,MAAK;AACT,QAAA,aAAa,CAAC,OAAO,GAAG,CAAC;AACzB,QAAA,IAAI,cAAc,CAAC,OAAO,KAAK,IAAI,EAAE;AACnC,YAAA,iBAAiB,CAAC,cAAc,CAAC,OAAO,CAAC;AACzC,YAAA,cAAc,CAAC,OAAO,GAAG,IAAI;QAC/B;AACA,QAAA,KAAK,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC;AAC9B,IAAA,CAAC,EACD,CAAC,OAAO,CAAC,CACV;IAED,MAAM,GAAG,GAAG,WAAW,CACrB,CAAC,GAAG,MAAkC,KAAI;AACxC,QAAA,QAAQ,EAAE;AACV,QAAA,IAAI;AACF,YAAA,OAAO,OAAO,CAAC,GAAG,CAAC,GAAG,gBAAgB,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;QACvD;QAAE,OAAO,KAAK,EAAE;AACd,YAAA,SAAS,EAAE;AACX,YAAA,MAAM,KAAK;QACb;IACF,CAAC,EACD,CAAC,OAAO,EAAE,IAAI,EAAE,SAAS,EAAE,QAAQ,CAAC,CACrC;IAED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package/result.cjs

@@ -0,0 +1,311 @@
+'use strict';
+
+var resultOrder = [
+	"clu",
+	"tree",
+	"ftree",
+	"net",
+	"states_as_physical",
+	"clu_states",
+	"tree_states",
+	"ftree_states",
+	"states",
+	"flow",
+	"flow_as_physical",
+	"newick",
+	"newick_states",
+	"json",
+	"json_states",
+	"csv",
+	"csv_states"
+];
+var formats = [
+	{
+		optionName: "clu",
+		files: [
+			{
+				key: "clu",
+				name: "Clu",
+				isStates: false,
+				suffix: "",
+				extension: "clu",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "clu_states",
+				name: "Clu",
+				isStates: true,
+				suffix: "_states",
+				extension: "clu",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "tree",
+		files: [
+			{
+				key: "tree",
+				name: "Tree",
+				isStates: false,
+				suffix: "",
+				extension: "tree",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "tree_states",
+				name: "Tree",
+				isStates: true,
+				suffix: "_states",
+				extension: "tree",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "ftree",
+		files: [
+			{
+				key: "ftree",
+				name: "Ftree",
+				isStates: false,
+				suffix: "",
+				extension: "ftree",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "ftree_states",
+				name: "Ftree",
+				isStates: true,
+				suffix: "_states",
+				extension: "ftree",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "newick",
+		files: [
+			{
+				key: "newick",
+				name: "Newick",
+				isStates: false,
+				suffix: "",
+				extension: "nwk",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "newick_states",
+				name: "Newick",
+				isStates: true,
+				suffix: "_states",
+				extension: "nwk",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "json",
+		files: [
+			{
+				key: "json",
+				name: "JSON",
+				isStates: false,
+				suffix: "",
+				extension: "json",
+				mimeType: "application/json;charset=utf-8"
+			},
+			{
+				key: "json_states",
+				name: "JSON",
+				isStates: true,
+				suffix: "_states",
+				extension: "json",
+				mimeType: "application/json;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "csv",
+		files: [
+			{
+				key: "csv",
+				name: "CSV",
+				isStates: false,
+				suffix: "",
+				extension: "csv",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "csv_states",
+				name: "CSV",
+				isStates: true,
+				suffix: "_states",
+				extension: "csv",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "network",
+		files: [
+			{
+				key: "net",
+				name: "Network",
+				isStates: false,
+				suffix: "",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "states_as_physical",
+				name: "States as physical",
+				isStates: false,
+				suffix: "_states_as_physical",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "states",
+		files: [
+			{
+				key: "states",
+				name: "States",
+				isStates: true,
+				suffix: "_states",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "flow",
+		files: [
+			{
+				key: "flow",
+				name: "Flow",
+				isStates: false,
+				suffix: "_flow",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "flow_as_physical",
+				name: "Flow states as physical",
+				isStates: true,
+				suffix: "_states_as_physical_flow",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	}
+];
+var outputFormatsManifestJson = {
+	resultOrder: resultOrder,
+	formats: formats
+};
+
+const outputFormatsManifest = outputFormatsManifestJson;
+const resultFormatsByKey = new Map(outputFormatsManifest.formats
+    .flatMap((format) => format.files)
+    .map((format) => [format.key, format]));
+const resultFormats = outputFormatsManifest.resultOrder.map((key) => {
+    const format = resultFormatsByKey.get(key);
+    if (!format) {
+        throw new Error(`Missing result format metadata for ${key}`);
+    }
+    return format;
+});
+function parseJsonMetadata(result) {
+    const json = result.json_states ?? result.json;
+    if (!json)
+        return { codelength: null, numLevels: null };
+    const source = json;
+    const codelength = Number(source.codelength);
+    const numLevels = Number(source.numLevels);
+    return {
+        codelength: Number.isFinite(codelength) ? codelength : null,
+        numLevels: Number.isFinite(numLevels) ? numLevels : null,
+    };
+}
+function textResultContent(result) {
+    return resultFormats
+        .filter((format) => format.key !== "json" && format.key !== "json_states")
+        .map((format) => result[format.key])
+        .filter((value) => typeof value === "string")
+        .join("\n");
+}
+function parseTextHeaderMetadata(result) {
+    const content = textResultContent(result);
+    const codelengthMatch = content.match(/#\s*codelength\s+([0-9.eE+-]+)/i);
+    const numLevelsMatch = content.match(/#\s*partitioned into\s+(\d+)\s+levels/i);
+    const codelength = codelengthMatch?.[1]
+        ? Number(codelengthMatch[1])
+        : Number.NaN;
+    const numLevels = numLevelsMatch?.[1]
+        ? Number(numLevelsMatch[1])
+        : Number.NaN;
+    return {
+        codelength: Number.isFinite(codelength) ? codelength : null,
+        numLevels: Number.isFinite(numLevels) ? numLevels : null,
+    };
+}
+function parseTreeLevels(result) {
+    const content = [
+        result.tree_states,
+        result.ftree_states,
+        result.tree,
+        result.ftree,
+    ].join("\n");
+    let maxDepth = 0;
+    for (const line of content.split(/\r?\n/)) {
+        const trimmed = line.trim();
+        if (!trimmed ||
+            trimmed.startsWith("#") ||
+            trimmed.startsWith("%") ||
+            trimmed.startsWith("*")) {
+            continue;
+        }
+        const [path] = trimmed.split(/\s+/);
+        if (!/^\d+(?::\d+)+$/.test(path))
+            continue;
+        maxDepth = Math.max(maxDepth, path.split(":").length);
+    }
+    return maxDepth > 0 ? maxDepth : null;
+}
+function getResultMetadata(result) {
+    const jsonMetadata = parseJsonMetadata(result);
+    const textHeaderMetadata = parseTextHeaderMetadata(result);
+    return {
+        codelength: jsonMetadata.codelength ?? textHeaderMetadata.codelength,
+        numLevels: jsonMetadata.numLevels ??
+            textHeaderMetadata.numLevels ??
+            parseTreeLevels(result),
+    };
+}
+function getResultFiles(result, basename) {
+    return resultFormats.flatMap((format) => {
+        const value = result[format.key];
+        if (value == null)
+            return [];
+        const content = format.key === "json" || format.key === "json_states"
+            ? JSON.stringify(value, null, 2)
+            : typeof value === "string"
+                ? value
+                : JSON.stringify(value, null, 2);
+        return [
+            {
+                ...format,
+                filename: `${basename}${format.suffix}.${format.extension}`,
+                content,
+            },
+        ];
+    });
+}
+
+exports.getResultFiles = getResultFiles;
+exports.getResultMetadata = getResultMetadata;
+exports.resultFormats = resultFormats;
+//# sourceMappingURL=result.cjs.map

package/result.cjs.map

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package/result.d.ts

@@ -0,0 +1,21 @@
+import type { Result } from "./index";
+export type ResultKey = keyof Result;
+export type ResultFormat = {
+    key: ResultKey;
+    name: string;
+    isStates: boolean;
+    suffix: string;
+    extension: string;
+    mimeType: string;
+};
+export type ResultFile = ResultFormat & {
+    filename: string;
+    content: string;
+};
+export type ResultMetadata = {
+    codelength: number | null;
+    numLevels: number | null;
+};
+export declare const resultFormats: ResultFormat[];
+export declare function getResultMetadata(result: Result): ResultMetadata;
+export declare function getResultFiles(result: Result, basename: string): ResultFile[];

package/result.js

@@ -0,0 +1,307 @@
+var resultOrder = [
+	"clu",
+	"tree",
+	"ftree",
+	"net",
+	"states_as_physical",
+	"clu_states",
+	"tree_states",
+	"ftree_states",
+	"states",
+	"flow",
+	"flow_as_physical",
+	"newick",
+	"newick_states",
+	"json",
+	"json_states",
+	"csv",
+	"csv_states"
+];
+var formats = [
+	{
+		optionName: "clu",
+		files: [
+			{
+				key: "clu",
+				name: "Clu",
+				isStates: false,
+				suffix: "",
+				extension: "clu",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "clu_states",
+				name: "Clu",
+				isStates: true,
+				suffix: "_states",
+				extension: "clu",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "tree",
+		files: [
+			{
+				key: "tree",
+				name: "Tree",
+				isStates: false,
+				suffix: "",
+				extension: "tree",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "tree_states",
+				name: "Tree",
+				isStates: true,
+				suffix: "_states",
+				extension: "tree",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "ftree",
+		files: [
+			{
+				key: "ftree",
+				name: "Ftree",
+				isStates: false,
+				suffix: "",
+				extension: "ftree",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "ftree_states",
+				name: "Ftree",
+				isStates: true,
+				suffix: "_states",
+				extension: "ftree",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "newick",
+		files: [
+			{
+				key: "newick",
+				name: "Newick",
+				isStates: false,
+				suffix: "",
+				extension: "nwk",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "newick_states",
+				name: "Newick",
+				isStates: true,
+				suffix: "_states",
+				extension: "nwk",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "json",
+		files: [
+			{
+				key: "json",
+				name: "JSON",
+				isStates: false,
+				suffix: "",
+				extension: "json",
+				mimeType: "application/json;charset=utf-8"
+			},
+			{
+				key: "json_states",
+				name: "JSON",
+				isStates: true,
+				suffix: "_states",
+				extension: "json",
+				mimeType: "application/json;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "csv",
+		files: [
+			{
+				key: "csv",
+				name: "CSV",
+				isStates: false,
+				suffix: "",
+				extension: "csv",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "csv_states",
+				name: "CSV",
+				isStates: true,
+				suffix: "_states",
+				extension: "csv",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "network",
+		files: [
+			{
+				key: "net",
+				name: "Network",
+				isStates: false,
+				suffix: "",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "states_as_physical",
+				name: "States as physical",
+				isStates: false,
+				suffix: "_states_as_physical",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "states",
+		files: [
+			{
+				key: "states",
+				name: "States",
+				isStates: true,
+				suffix: "_states",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	},
+	{
+		optionName: "flow",
+		files: [
+			{
+				key: "flow",
+				name: "Flow",
+				isStates: false,
+				suffix: "_flow",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			},
+			{
+				key: "flow_as_physical",
+				name: "Flow states as physical",
+				isStates: true,
+				suffix: "_states_as_physical_flow",
+				extension: "net",
+				mimeType: "text/plain;charset=utf-8"
+			}
+		]
+	}
+];
+var outputFormatsManifestJson = {
+	resultOrder: resultOrder,
+	formats: formats
+};
+
+const outputFormatsManifest = outputFormatsManifestJson;
+const resultFormatsByKey = new Map(outputFormatsManifest.formats
+    .flatMap((format) => format.files)
+    .map((format) => [format.key, format]));
+const resultFormats = outputFormatsManifest.resultOrder.map((key) => {
+    const format = resultFormatsByKey.get(key);
+    if (!format) {
+        throw new Error(`Missing result format metadata for ${key}`);
+    }
+    return format;
+});
+function parseJsonMetadata(result) {
+    const json = result.json_states ?? result.json;
+    if (!json)
+        return { codelength: null, numLevels: null };
+    const source = json;
+    const codelength = Number(source.codelength);
+    const numLevels = Number(source.numLevels);
+    return {
+        codelength: Number.isFinite(codelength) ? codelength : null,
+        numLevels: Number.isFinite(numLevels) ? numLevels : null,
+    };
+}
+function textResultContent(result) {
+    return resultFormats
+        .filter((format) => format.key !== "json" && format.key !== "json_states")
+        .map((format) => result[format.key])
+        .filter((value) => typeof value === "string")
+        .join("\n");
+}
+function parseTextHeaderMetadata(result) {
+    const content = textResultContent(result);
+    const codelengthMatch = content.match(/#\s*codelength\s+([0-9.eE+-]+)/i);
+    const numLevelsMatch = content.match(/#\s*partitioned into\s+(\d+)\s+levels/i);
+    const codelength = codelengthMatch?.[1]
+        ? Number(codelengthMatch[1])
+        : Number.NaN;
+    const numLevels = numLevelsMatch?.[1]
+        ? Number(numLevelsMatch[1])
+        : Number.NaN;
+    return {
+        codelength: Number.isFinite(codelength) ? codelength : null,
+        numLevels: Number.isFinite(numLevels) ? numLevels : null,
+    };
+}
+function parseTreeLevels(result) {
+    const content = [
+        result.tree_states,
+        result.ftree_states,
+        result.tree,
+        result.ftree,
+    ].join("\n");
+    let maxDepth = 0;
+    for (const line of content.split(/\r?\n/)) {
+        const trimmed = line.trim();
+        if (!trimmed ||
+            trimmed.startsWith("#") ||
+            trimmed.startsWith("%") ||
+            trimmed.startsWith("*")) {
+            continue;
+        }
+        const [path] = trimmed.split(/\s+/);
+        if (!/^\d+(?::\d+)+$/.test(path))
+            continue;
+        maxDepth = Math.max(maxDepth, path.split(":").length);
+    }
+    return maxDepth > 0 ? maxDepth : null;
+}
+function getResultMetadata(result) {
+    const jsonMetadata = parseJsonMetadata(result);
+    const textHeaderMetadata = parseTextHeaderMetadata(result);
+    return {
+        codelength: jsonMetadata.codelength ?? textHeaderMetadata.codelength,
+        numLevels: jsonMetadata.numLevels ??
+            textHeaderMetadata.numLevels ??
+            parseTreeLevels(result),
+    };
+}
+function getResultFiles(result, basename) {
+    return resultFormats.flatMap((format) => {
+        const value = result[format.key];
+        if (value == null)
+            return [];
+        const content = format.key === "json" || format.key === "json_states"
+            ? JSON.stringify(value, null, 2)
+            : typeof value === "string"
+                ? value
+                : JSON.stringify(value, null, 2);
+        return [
+            {
+                ...format,
+                filename: `${basename}${format.suffix}.${format.extension}`,
+                content,
+            },
+        ];
+    });
+}
+
+export { getResultFiles, getResultMetadata, resultFormats };
+//# sourceMappingURL=result.js.map

package/result.js.map

@@ -0,0 +1 @@
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