@manuscripts/transform 4.5.7 → 4.5.8

package/dist/cjs/jats/__tests__/jats-exporter.test.js

@@ -14,8 +14,12 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 const libxmljs2_1 = require("libxmljs2");
+const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
 const jats_exporter_1 = require("../exporter/jats-exporter");
 const parse_jats_article_1 = require("../importer/parse-jats-article");
 const citations_1 = require("./citations");
@@ -32,10 +36,10 @@ describe('JATS exporter', () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-example-full.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const result = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
-        expect(result).toMatchSnapshot('jats-export');
+        expect((0, w3c_xmlserializer_1.default)(document)).toMatchSnapshot('jats-export');
     });
     test('export with & and < in bibliography metadata', async () => {
         const transformer = new jats_exporter_1.JATSExporter();
@@ -48,27 +52,27 @@ describe('JATS exporter', () => {
             }
         });
         biblio.attrs.title += ' & Sons 55 < 135';
-        const result = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
-        expect(result).toMatchSnapshot('jats-export-with-xml-unsafe-in-biblios');
+        expect((0, w3c_xmlserializer_1.default)(document)).toMatchSnapshot('jats-export-with-xml-unsafe-in-biblios');
     });
     test('export v1.1', async () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-example-full.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const result = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
             version: '1.1',
         });
-        expect(result).toMatchSnapshot('jats-export-1.1');
+        expect((0, w3c_xmlserializer_1.default)(document)).toMatchSnapshot('jats-export-1.1');
     });
     test('export unknown version', async () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-example-full.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
         await expect(async () => {
-            await transformer.serializeToJATS(node, {
+            await transformer.export(node, {
                 csl: citations_1.DEFAULT_CSL_OPTIONS,
                 version: '1.0',
             });
@@ -78,9 +82,10 @@ describe('JATS exporter', () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-tables-example.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
+        const xml = (0, w3c_xmlserializer_1.default)(document);
         const resultDoc = parseXMLWithDTD(xml);
         const tableWrapFoot = resultDoc.get('//table-wrap/table-wrap-foot');
         const paragraph = resultDoc.get('//table-wrap/table-wrap-foot/p');
@@ -91,30 +96,30 @@ describe('JATS exporter', () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-import.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
-        const { errors } = parseXMLWithDTD(xml);
+        const { errors } = parseXMLWithDTD((0, w3c_xmlserializer_1.default)(document));
         expect(errors).toHaveLength(0);
     });
     test('DTD validation: article with title markup and citations', async () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-document.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
-        const { errors } = parseXMLWithDTD(xml);
+        const { errors } = parseXMLWithDTD((0, w3c_xmlserializer_1.default)(document));
         expect(errors).toHaveLength(0);
     });
     test('Export link', async () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-import.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
-        const output = parseXMLWithDTD(xml);
+        const output = parseXMLWithDTD((0, w3c_xmlserializer_1.default)(document));
         const link = output.get('//ext-link[@ext-link-type="uri"]');
         expect(link).not.toBeNull();
         expect(link.text()).toBe('https//orcid.org/0000-0003-2217-5904');
@@ -129,20 +134,20 @@ describe('JATS exporter', () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-example-doc.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
-        const { errors } = parseXMLWithDTD(xml);
+        const { errors } = parseXMLWithDTD((0, w3c_xmlserializer_1.default)(document));
         expect(errors).toHaveLength(0);
     });
     test('export with supplement', async () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-import.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
-        const resultDoc = parseXMLWithDTD(xml);
+        const resultDoc = parseXMLWithDTD((0, w3c_xmlserializer_1.default)(document));
         const supplementaryMaterial = resultDoc.get('//supplementary-material');
         if (!supplementaryMaterial) {
             throw new Error('No supplementary material found');
@@ -169,9 +174,10 @@ describe('JATS exporter', () => {
                 n.attrs.rids.forEach((rid) => citedIDs.add(rid));
             }
         });
-        const xml = await new jats_exporter_1.JATSExporter().serializeToJATS(node, {
+        const document = await new jats_exporter_1.JATSExporter().export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
+        const xml = (0, w3c_xmlserializer_1.default)(document);
         const refCount = parseXMLWithDTD(xml).find('//ref-list/ref').length;
         expect(refCount).toBe(bibliographyItemIDs.size);
         const { errors } = parseXMLWithDTD(xml);
@@ -181,9 +187,10 @@ describe('JATS exporter', () => {
         const transformer = new jats_exporter_1.JATSExporter();
         const input = await (0, files_1.readAndParseFixture)('jats-fn-group.xml');
         const node = (0, parse_jats_article_1.parseJATSArticle)(input, section_categories_1.sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: citations_1.DEFAULT_CSL_OPTIONS,
         });
+        const xml = (0, w3c_xmlserializer_1.default)(document);
         const footnoteCategories = [
             'con',
             'deceased',

package/dist/cjs/jats/__tests__/jats-roundtrip.test.js

@@ -14,8 +14,12 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 const libxmljs2_1 = require("libxmljs2");
+const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
 const jats_exporter_1 = require("../exporter/jats-exporter");
 const parse_jats_article_1 = require("../importer/parse-jats-article");
 const citations_1 = require("./citations");
@@ -31,9 +35,10 @@ const roundtrip = async (filename) => {
     const doc = new DOMParser().parseFromString(input, 'application/xml');
     const node = (0, parse_jats_article_1.parseJATSArticle)(doc, section_categories_1.sectionCategories);
     const exporter = new jats_exporter_1.JATSExporter();
-    return await exporter.serializeToJATS(node, {
+    const document = await exporter.export(node, {
         csl: citations_1.DEFAULT_CSL_OPTIONS,
     });
+    return (0, w3c_xmlserializer_1.default)(document);
 };
 describe('JATS roundtrip', () => {
     test('jats-import.xml roundtrip', async () => {

package/dist/cjs/jats/exporter/jats-exporter.js

@@ -47,15 +47,11 @@ var __importStar = (this && this.__importStar) || (function () {
         return result;
     };
 })();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.JATSExporter = exports.createCounter = void 0;
 const Citeproc = __importStar(require("citeproc"));
 const prosemirror_model_1 = require("prosemirror-model");
 const prosemirror_utils_1 = require("prosemirror-utils");
-const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
 const citeproc_1 = require("../../lib/citeproc");
 const credit_roles_1 = require("../../lib/credit-roles");
 const footnotes_1 = require("../../lib/footnotes");
@@ -118,7 +114,7 @@ class JATSExporter {
                 this.nodesMap.set(type, nodes);
             });
         };
-        this.serializeToJATS = async (manuscriptNode, options) => {
+        this.export = async (manuscriptNode, options) => {
             this.manuscriptNode = manuscriptNode;
             this.populateNodesMap();
             this.initCiteprocEngine(options);
@@ -149,7 +145,7 @@ class JATSExporter {
                 $article.appendChild($floatsGroup);
             }
             await this.rewriteIDs();
-            return (0, w3c_xmlserializer_1.default)(this.document);
+            return this.document;
         };
         this.appendChildNodeOfType = ($element, node, type) => {
             const childNode = this.getFirstChildOfType(type, node);
@@ -440,7 +436,7 @@ class JATSExporter {
             const [, bibliography] = this.engine.makeBibliography();
             const parser = new DOMParser();
             bibliography.forEach((item) => {
-                const fragment = `<template xmlns:xlink="${xml_1.XLINK_NAMESPACE}">${(0, xml_1.sanitizeXmlString)(item)}</template>`;
+                const fragment = `<wrapper xmlns:xlink="${xml_1.XLINK_NAMESPACE}">${(0, xml_1.sanitizeXmlString)(item)}</wrapper>`;
                 const $ref = parser
                     .parseFromString(fragment, 'text/xml')
                     .querySelector('ref');

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.VERSION = void 0;
-exports.VERSION = "4.5.7";
+exports.VERSION = "4.5.8";

package/dist/es/jats/__tests__/jats-exporter.test.js

@@ -14,6 +14,7 @@
  * limitations under the License.
  */
 import { parseXml } from 'libxmljs2';
+import serializeToXML from 'w3c-xmlserializer';
 import { JATSExporter } from '../exporter/jats-exporter';
 import { parseJATSArticle } from '../importer/parse-jats-article';
 import { DEFAULT_CSL_OPTIONS } from './citations';
@@ -30,10 +31,10 @@ describe('JATS exporter', () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-full.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const result = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
-        expect(result).toMatchSnapshot('jats-export');
+        expect(serializeToXML(document)).toMatchSnapshot('jats-export');
     });
     test('export with & and < in bibliography metadata', async () => {
         const transformer = new JATSExporter();
@@ -46,27 +47,27 @@ describe('JATS exporter', () => {
             }
         });
         biblio.attrs.title += ' & Sons 55 < 135';
-        const result = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
-        expect(result).toMatchSnapshot('jats-export-with-xml-unsafe-in-biblios');
+        expect(serializeToXML(document)).toMatchSnapshot('jats-export-with-xml-unsafe-in-biblios');
     });
     test('export v1.1', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-full.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const result = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
             version: '1.1',
         });
-        expect(result).toMatchSnapshot('jats-export-1.1');
+        expect(serializeToXML(document)).toMatchSnapshot('jats-export-1.1');
     });
     test('export unknown version', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-full.xml');
         const node = parseJATSArticle(input, sectionCategories);
         await expect(async () => {
-            await transformer.serializeToJATS(node, {
+            await transformer.export(node, {
                 csl: DEFAULT_CSL_OPTIONS,
                 version: '1.0',
             });
@@ -76,9 +77,10 @@ describe('JATS exporter', () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-tables-example.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
+        const xml = serializeToXML(document);
         const resultDoc = parseXMLWithDTD(xml);
         const tableWrapFoot = resultDoc.get('//table-wrap/table-wrap-foot');
         const paragraph = resultDoc.get('//table-wrap/table-wrap-foot/p');
@@ -89,30 +91,30 @@ describe('JATS exporter', () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-import.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
-        const { errors } = parseXMLWithDTD(xml);
+        const { errors } = parseXMLWithDTD(serializeToXML(document));
         expect(errors).toHaveLength(0);
     });
     test('DTD validation: article with title markup and citations', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-document.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
-        const { errors } = parseXMLWithDTD(xml);
+        const { errors } = parseXMLWithDTD(serializeToXML(document));
         expect(errors).toHaveLength(0);
     });
     test('Export link', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-import.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
-        const output = parseXMLWithDTD(xml);
+        const output = parseXMLWithDTD(serializeToXML(document));
         const link = output.get('//ext-link[@ext-link-type="uri"]');
         expect(link).not.toBeNull();
         expect(link.text()).toBe('https//orcid.org/0000-0003-2217-5904');
@@ -127,20 +129,20 @@ describe('JATS exporter', () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-doc.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
-        const { errors } = parseXMLWithDTD(xml);
+        const { errors } = parseXMLWithDTD(serializeToXML(document));
         expect(errors).toHaveLength(0);
     });
     test('export with supplement', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-import.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
-        const resultDoc = parseXMLWithDTD(xml);
+        const resultDoc = parseXMLWithDTD(serializeToXML(document));
         const supplementaryMaterial = resultDoc.get('//supplementary-material');
         if (!supplementaryMaterial) {
             throw new Error('No supplementary material found');
@@ -167,9 +169,10 @@ describe('JATS exporter', () => {
                 n.attrs.rids.forEach((rid) => citedIDs.add(rid));
             }
         });
-        const xml = await new JATSExporter().serializeToJATS(node, {
+        const document = await new JATSExporter().export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
+        const xml = serializeToXML(document);
         const refCount = parseXMLWithDTD(xml).find('//ref-list/ref').length;
         expect(refCount).toBe(bibliographyItemIDs.size);
         const { errors } = parseXMLWithDTD(xml);
@@ -179,9 +182,10 @@ describe('JATS exporter', () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-fn-group.xml');
         const node = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
+        const document = await transformer.export(node, {
             csl: DEFAULT_CSL_OPTIONS,
         });
+        const xml = serializeToXML(document);
         const footnoteCategories = [
             'con',
             'deceased',

package/dist/es/jats/__tests__/jats-roundtrip.test.js

@@ -14,6 +14,7 @@
  * limitations under the License.
  */
 import { parseXml } from 'libxmljs2';
+import serializeToXML from 'w3c-xmlserializer';
 import { JATSExporter } from '../exporter/jats-exporter';
 import { parseJATSArticle } from '../importer/parse-jats-article';
 import { DEFAULT_CSL_OPTIONS } from './citations';
@@ -29,9 +30,10 @@ const roundtrip = async (filename) => {
     const doc = new DOMParser().parseFromString(input, 'application/xml');
     const node = parseJATSArticle(doc, sectionCategories);
     const exporter = new JATSExporter();
-    return await exporter.serializeToJATS(node, {
+    const document = await exporter.export(node, {
         csl: DEFAULT_CSL_OPTIONS,
     });
+    return serializeToXML(document);
 };
 describe('JATS roundtrip', () => {
     test('jats-import.xml roundtrip', async () => {

package/dist/es/jats/exporter/jats-exporter.js

@@ -16,7 +16,6 @@
 import * as Citeproc from 'citeproc';
 import { DOMSerializer } from 'prosemirror-model';
 import { findChildrenByAttr, findChildrenByType } from 'prosemirror-utils';
-import serializeToXML from 'w3c-xmlserializer';
 import { buildCiteprocCitation } from '../../lib/citeproc';
 import { CreditRoleUrls } from '../../lib/credit-roles';
 import { generateFootnoteLabels } from '../../lib/footnotes';
@@ -78,7 +77,7 @@ export class JATSExporter {
                 this.nodesMap.set(type, nodes);
             });
         };
-        this.serializeToJATS = async (manuscriptNode, options) => {
+        this.export = async (manuscriptNode, options) => {
             this.manuscriptNode = manuscriptNode;
             this.populateNodesMap();
             this.initCiteprocEngine(options);
@@ -109,7 +108,7 @@ export class JATSExporter {
                 $article.appendChild($floatsGroup);
             }
             await this.rewriteIDs();
-            return serializeToXML(this.document);
+            return this.document;
         };
         this.appendChildNodeOfType = ($element, node, type) => {
             const childNode = this.getFirstChildOfType(type, node);
@@ -400,7 +399,7 @@ export class JATSExporter {
             const [, bibliography] = this.engine.makeBibliography();
             const parser = new DOMParser();
             bibliography.forEach((item) => {
-                const fragment = `<template xmlns:xlink="${XLINK_NAMESPACE}">${sanitizeXmlString(item)}</template>`;
+                const fragment = `<wrapper xmlns:xlink="${XLINK_NAMESPACE}">${sanitizeXmlString(item)}</wrapper>`;
                 const $ref = parser
                     .parseFromString(fragment, 'text/xml')
                     .querySelector('ref');

package/dist/es/version.js

@@ -1 +1 @@
-export const VERSION = "4.5.7";
+export const VERSION = "4.5.8";

package/dist/types/jats/exporter/jats-exporter.d.ts

@@ -42,7 +42,7 @@ export declare class JATSExporter {
     private populateNodesMap;
     protected getFirstChildOfType<T extends ManuscriptNode>(type: NodeType, node?: ManuscriptNode): T | undefined;
     protected getChildrenOfType<T extends ManuscriptNode>(type: NodeType, node?: ManuscriptNode): T[];
-    serializeToJATS: (manuscriptNode: ActualManuscriptNode, options: ExportOptions) => Promise<string>;
+    export: (manuscriptNode: ActualManuscriptNode, options: ExportOptions) => Promise<Document>;
     private appendChildNodeOfType;
     private appendChildrenNodeOfType;
     protected appendCaption: ($element: Element, node: ManuscriptNode) => void;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const VERSION = "4.5.7";
+export declare const VERSION = "4.5.8";

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "4.5.7",
+  "version": "4.5.8",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",
@@ -39,8 +39,7 @@
     "prosemirror-tables": "1.7.1",
     "prosemirror-utils": "1.2.2",
     "semver": "7.7.4",
-    "uuid": "14.0.0",
-    "w3c-xmlserializer": "5.0.0"
+    "uuid": "14.0.0"
   },
   "devDependencies": {
     "@eslint/eslintrc": "3.3.5",
@@ -80,7 +79,8 @@
     "prosemirror-state": "1.4.3",
     "prosemirror-view": "1.39.2",
     "rimraf": "6.1.3",
-    "typescript": "6.0.3"
+    "typescript": "6.0.3",
+    "w3c-xmlserializer": "5.0.0"
   },
   "engines": {
     "node": ">=22"

package/src/jats/__tests__/jats-exporter.test.ts

@@ -15,6 +15,7 @@
  */
 
 import { Element as XMLElement, parseXml } from 'libxmljs2'
+import serializeToXML from 'w3c-xmlserializer'
 
 import { JATSExporter } from '../exporter/jats-exporter'
 import { Version } from '../exporter/jats-versions'
@@ -40,11 +41,11 @@ describe('JATS exporter', () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-example-full.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const result = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
 
-    expect(result).toMatchSnapshot('jats-export')
+    expect(serializeToXML(document)).toMatchSnapshot('jats-export')
   })
 
   test('export with & and < in bibliography metadata', async () => {
@@ -61,23 +62,25 @@ describe('JATS exporter', () => {
 
     biblio!.attrs.title += ' & Sons 55 < 135'
 
-    const result = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
 
-    expect(result).toMatchSnapshot('jats-export-with-xml-unsafe-in-biblios')
+    expect(serializeToXML(document)).toMatchSnapshot(
+      'jats-export-with-xml-unsafe-in-biblios'
+    )
   })
 
   test('export v1.1', async () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-example-full.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const result = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
       version: '1.1',
     })
 
-    expect(result).toMatchSnapshot('jats-export-1.1')
+    expect(serializeToXML(document)).toMatchSnapshot('jats-export-1.1')
   })
 
   test('export unknown version', async () => {
@@ -86,7 +89,7 @@ describe('JATS exporter', () => {
     const node = parseJATSArticle(input, sectionCategories)
 
     await expect(async () => {
-      await transformer.serializeToJATS(node, {
+      await transformer.export(node, {
         csl: DEFAULT_CSL_OPTIONS,
         version: '1.0' as unknown as Version,
       })
@@ -96,9 +99,10 @@ describe('JATS exporter', () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-tables-example.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const xml = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
+    const xml = serializeToXML(document)
 
     const resultDoc = parseXMLWithDTD(xml)
     const tableWrapFoot = resultDoc.get('//table-wrap/table-wrap-foot')
@@ -111,11 +115,11 @@ describe('JATS exporter', () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-import.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const xml = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
 
-    const { errors } = parseXMLWithDTD(xml)
+    const { errors } = parseXMLWithDTD(serializeToXML(document))
 
     expect(errors).toHaveLength(0)
   })
@@ -124,10 +128,10 @@ describe('JATS exporter', () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-document.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const xml = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
-    const { errors } = parseXMLWithDTD(xml)
+    const { errors } = parseXMLWithDTD(serializeToXML(document))
 
     expect(errors).toHaveLength(0)
   })
@@ -136,11 +140,11 @@ describe('JATS exporter', () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-import.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const xml = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
 
-    const output = parseXMLWithDTD(xml)
+    const output = parseXMLWithDTD(serializeToXML(document))
     const link = output.get<XMLElement>('//ext-link[@ext-link-type="uri"]')
     expect(link).not.toBeNull()
     expect(link!.text()).toBe('https//orcid.org/0000-0003-2217-5904')
@@ -159,11 +163,11 @@ describe('JATS exporter', () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-example-doc.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const xml = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
 
-    const { errors } = parseXMLWithDTD(xml)
+    const { errors } = parseXMLWithDTD(serializeToXML(document))
 
     expect(errors).toHaveLength(0)
   })
@@ -172,10 +176,10 @@ describe('JATS exporter', () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-import.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const xml = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
-    const resultDoc = parseXMLWithDTD(xml)
+    const resultDoc = parseXMLWithDTD(serializeToXML(document))
     const supplementaryMaterial = resultDoc.get('//supplementary-material')
     if (!supplementaryMaterial) {
       throw new Error('No supplementary material found')
@@ -215,9 +219,10 @@ describe('JATS exporter', () => {
         n.attrs.rids.forEach((rid: string) => citedIDs.add(rid))
       }
     })
-    const xml = await new JATSExporter().serializeToJATS(node, {
+    const document = await new JATSExporter().export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
+    const xml = serializeToXML(document)
     const refCount = parseXMLWithDTD(xml).find('//ref-list/ref').length
     expect(refCount).toBe(bibliographyItemIDs.size)
     const { errors } = parseXMLWithDTD(xml)
@@ -228,9 +233,10 @@ describe('JATS exporter', () => {
     const transformer = new JATSExporter()
     const input = await readAndParseFixture('jats-fn-group.xml')
     const node = parseJATSArticle(input, sectionCategories)
-    const xml = await transformer.serializeToJATS(node, {
+    const document = await transformer.export(node, {
       csl: DEFAULT_CSL_OPTIONS,
     })
+    const xml = serializeToXML(document)
     const footnoteCategories = [
       'con',
       'deceased',

package/src/jats/__tests__/jats-roundtrip.test.ts

@@ -15,6 +15,7 @@
  */
 
 import { parseXml } from 'libxmljs2'
+import serializeToXML from 'w3c-xmlserializer'
 
 import { JATSExporter } from '../exporter/jats-exporter'
 import { parseJATSArticle } from '../importer/parse-jats-article'
@@ -36,9 +37,10 @@ const roundtrip = async (filename: string) => {
   const node = parseJATSArticle(doc, sectionCategories)
 
   const exporter = new JATSExporter()
-  return await exporter.serializeToJATS(node, {
+  const document = await exporter.export(node, {
     csl: DEFAULT_CSL_OPTIONS,
   })
+  return serializeToXML(document)
 }
 
 describe('JATS roundtrip', () => {

package/src/jats/exporter/jats-exporter.ts

@@ -17,7 +17,6 @@
 import * as Citeproc from 'citeproc'
 import { DOMOutputSpec, DOMSerializer, type NodeType } from 'prosemirror-model'
 import { findChildrenByAttr, findChildrenByType } from 'prosemirror-utils'
-import serializeToXML from 'w3c-xmlserializer'
 
 import { buildCiteprocCitation } from '../../lib/citeproc'
 import { CreditRoleUrls } from '../../lib/credit-roles'
@@ -163,10 +162,10 @@ export class JATSExporter {
     return (nodes ?? []).filter((n): n is T => isNodeOfType<T>(n, type))
   }
 
-  public serializeToJATS = async (
+  public export = async (
     manuscriptNode: ActualManuscriptNode,
     options: ExportOptions
-  ): Promise<string> => {
+  ): Promise<Document> => {
     this.manuscriptNode = manuscriptNode
     this.populateNodesMap()
     this.initCiteprocEngine(options)
@@ -223,7 +222,7 @@ export class JATSExporter {
       $article.appendChild($floatsGroup)
     }
     await this.rewriteIDs()
-    return serializeToXML(this.document)
+    return this.document
   }
 
   private appendChildNodeOfType = (
@@ -616,9 +615,9 @@ export class JATSExporter {
     const [, bibliography] = this.engine.makeBibliography()
     const parser = new DOMParser()
     bibliography.forEach((item) => {
-      const fragment = `<template xmlns:xlink="${XLINK_NAMESPACE}">${sanitizeXmlString(
+      const fragment = `<wrapper xmlns:xlink="${XLINK_NAMESPACE}">${sanitizeXmlString(
         item
-      )}</template>`
+      )}</wrapper>`
       const $ref = parser
         .parseFromString(fragment, 'text/xml')
         .querySelector('ref')

package/src/version.ts

@@ -1 +1 @@
-export const VERSION = "4.5.7";
+export const VERSION = "4.5.8";