@manuscripts/transform 4.5.1 → 4.5.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/jats/__tests__/data/section-categories.js +5 -5
- package/dist/cjs/jats/__tests__/jats-importer.test.js +19 -5
- package/dist/cjs/jats/exporter/jats-exporter.js +725 -910
- package/dist/cjs/jats/exporter/jats-versions.js +9 -9
- package/dist/cjs/jats/importer/jats-dom-parser.js +25 -24
- package/dist/cjs/jats/importer/jats-transformations.js +14 -30
- package/dist/cjs/lib/section-categories.js +31 -1
- package/dist/cjs/schema/index.js +3 -0
- package/dist/cjs/schema/migration/migration-scripts/4.5.3.js +37 -0
- package/dist/cjs/schema/migration/migration-scripts/index.js +2 -0
- package/dist/cjs/schema/nodes/abstract.js +51 -0
- package/dist/cjs/schema/nodes/abstracts.js +1 -1
- package/dist/cjs/schema/nodes/footnote.js +1 -0
- package/dist/cjs/schema/nodes/general_table_footnote.js +1 -0
- package/dist/cjs/transformer/node-names.js +1 -0
- package/dist/cjs/transformer/node-title.js +2 -0
- package/dist/cjs/version.js +1 -1
- package/dist/es/jats/__tests__/data/section-categories.js +5 -5
- package/dist/es/jats/__tests__/jats-importer.test.js +19 -5
- package/dist/es/jats/exporter/jats-exporter.js +728 -913
- package/dist/es/jats/exporter/jats-versions.js +7 -7
- package/dist/es/jats/importer/jats-dom-parser.js +25 -24
- package/dist/es/jats/importer/jats-transformations.js +14 -30
- package/dist/es/lib/section-categories.js +28 -0
- package/dist/es/schema/index.js +3 -0
- package/dist/es/schema/migration/migration-scripts/4.5.3.js +35 -0
- package/dist/es/schema/migration/migration-scripts/index.js +2 -0
- package/dist/es/schema/nodes/abstract.js +47 -0
- package/dist/es/schema/nodes/abstracts.js +1 -1
- package/dist/es/schema/nodes/footnote.js +1 -0
- package/dist/es/schema/nodes/general_table_footnote.js +1 -0
- package/dist/es/transformer/node-names.js +1 -0
- package/dist/es/transformer/node-title.js +2 -0
- package/dist/es/version.js +1 -1
- package/dist/types/jats/exporter/jats-exporter.d.ts +31 -27
- package/dist/types/jats/exporter/jats-versions.d.ts +4 -4
- package/dist/types/jats/importer/jats-dom-parser.d.ts +0 -1
- package/dist/types/lib/section-categories.d.ts +3 -0
- package/dist/types/schema/index.d.ts +1 -0
- package/dist/types/schema/migration/migration-scripts/4.5.3.d.ts +8 -0
- package/dist/types/schema/migration/migration-scripts/index.d.ts +2 -1
- package/dist/types/schema/nodes/abstract.d.ts +26 -0
- package/dist/types/schema/types.d.ts +1 -1
- package/dist/types/version.d.ts +1 -1
- package/package.json +1 -1
- package/src/jats/__tests__/__snapshots__/jats-exporter.test.ts.snap +3 -3
- package/src/jats/__tests__/__snapshots__/jats-importer.test.ts.snap +86 -132
- package/src/jats/__tests__/__snapshots__/jats-roundtrip.test.ts.snap +3 -3
- package/src/jats/__tests__/data/section-categories.ts +5 -5
- package/src/jats/__tests__/jats-importer.test.ts +22 -6
- package/src/jats/exporter/jats-exporter.ts +855 -1126
- package/src/jats/exporter/jats-versions.ts +11 -11
- package/src/jats/importer/jats-dom-parser.ts +34 -34
- package/src/jats/importer/jats-transformations.ts +21 -37
- package/src/lib/section-categories.ts +36 -0
- package/src/schema/index.ts +3 -0
- package/src/schema/migration/migration-scripts/4.5.3.ts +57 -0
- package/src/schema/migration/migration-scripts/index.ts +2 -0
- package/src/schema/nodes/abstract.ts +66 -0
- package/src/schema/nodes/abstracts.ts +2 -1
- package/src/schema/nodes/footnote.ts +1 -0
- package/src/schema/nodes/general_table_footnote.ts +1 -0
- package/src/schema/types.ts +1 -0
- package/src/transformer/node-names.ts +1 -0
- package/src/transformer/node-title.ts +2 -0
- package/src/version.ts +1 -1
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// Vitest Snapshot v1, https://vitest.dev/guide/snapshot.html
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exports[`JATS exporter > export latest version > jats-export 1`] = `"<!DOCTYPE article PUBLIC \\"-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables with MathML3 v1.2 20190208//EN\\" \\"http://jats.nlm.nih.gov/archiving/1.2/JATS-archive-oasis-article1-mathml3.dtd\\"><article xmlns:xlink=\\"http://www.w3.org/1999/xlink\\" article-type=\\"research-article\\" xml:lang=\\"en\\"><front><article-meta><title-group><article-title>This is the Article Title</article-title><subtitle>Which has a Subtitle</subtitle></title-group><contrib-group content-type=\\"authors\\"><contrib contrib-type=\\"author\\" id=\\"contrib-1\\" corresp=\\"yes\\"><role>Member, IEEE</role><name><surname>Day</surname><given-names>Nathan</given-names></name><xref ref-type=\\"aff\\" rid=\\"aff-1\\"><sup>1</sup></xref><xref ref-type=\\"fn\\" rid=\\"fn-1\\"><sup>2</sup></xref><xref ref-type=\\"corresp\\" rid=\\"corresp-1\\"><sup>3</sup></xref></contrib><aff id=\\"aff-1\\"><label>1</label><institution>University of Life</institution>, <addr-line>Houston, TX</addr-line>, <city>Houston</city>, <state>TX</state>, <country>USA</country></aff></contrib-group><author-notes><corresp id=\\"corresp-1\\"><label>*</label>Correspondence: nday@inera.com.</corresp><fn id=\\"fn-1\\"><p>Author_Footnote.</p></fn><fn id=\\"fn-2\\"><p>DisclaimerThis is an unlabelled author footnote with a separate title.</p></fn><fn fn-type=\\"coi-statement\\"><label>Competing Interests</label><p id=\\"p-1\\">This is information about Competing Interests.</p></fn></author-notes><history><date date-type=\\"accepted\\"><day>12</day><month>05</month><year>2009</year></date><date date-type=\\"received\\"><day>01</day><month>04</month><year>2009</year></date><date date-type=\\"rev-recd\\"><day>02</day><month>05</month><year>2009</year></date></history><abstract abstract-type=\\"teaser\\"><p id=\\"p-2\\">The direct interaction of phenobarbital with the epidermal growth factor receptor reveals a new network interface in nuclear receptor signaling.</p></abstract><abstract><sec id=\\"sec-1\\" sec-type=\\"intro\\"><title>Introduction</title><p id=\\"p-3\\">This is a sectionalized abstract.</p></sec><sec id=\\"sec-2\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-4\\">These are the results of the experiment.</p></sec></abstract><kwd-group kwd-group-type=\\"author\\"><kwd>Paragraphs</kwd><kwd>exporting</kwd><kwd>testing</kwd><kwd>NLM DTD</kwd></kwd-group><counts><fig-count count=\\"1\\"/><ref-count count=\\"1\\"/><word-count count=\\"
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exports[`JATS exporter > export latest version > jats-export 1`] = `"<!DOCTYPE article PUBLIC \\"-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables with MathML3 v1.2 20190208//EN\\" \\"http://jats.nlm.nih.gov/archiving/1.2/JATS-archive-oasis-article1-mathml3.dtd\\"><article xmlns:xlink=\\"http://www.w3.org/1999/xlink\\" article-type=\\"research-article\\" xml:lang=\\"en\\"><front><article-meta><title-group><article-title>This is the Article Title</article-title><subtitle>Which has a Subtitle</subtitle></title-group><contrib-group content-type=\\"authors\\"><contrib contrib-type=\\"author\\" id=\\"contrib-1\\" corresp=\\"yes\\"><role>Member, IEEE</role><name><surname>Day</surname><given-names>Nathan</given-names></name><xref ref-type=\\"aff\\" rid=\\"aff-1\\"><sup>1</sup></xref><xref ref-type=\\"fn\\" rid=\\"fn-1\\"><sup>2</sup></xref><xref ref-type=\\"corresp\\" rid=\\"corresp-1\\"><sup>3</sup></xref></contrib><aff id=\\"aff-1\\"><label>1</label><institution>University of Life</institution>, <addr-line>Houston, TX</addr-line>, <city>Houston</city>, <state>TX</state>, <country>USA</country></aff></contrib-group><author-notes><corresp id=\\"corresp-1\\"><label>*</label>Correspondence: nday@inera.com.</corresp><fn id=\\"fn-1\\"><p>Author_Footnote.</p></fn><fn id=\\"fn-2\\"><p>DisclaimerThis is an unlabelled author footnote with a separate title.</p></fn><fn fn-type=\\"coi-statement\\"><label>Competing Interests</label><p id=\\"p-1\\">This is information about Competing Interests.</p></fn></author-notes><history><date date-type=\\"accepted\\"><day>12</day><month>05</month><year>2009</year></date><date date-type=\\"received\\"><day>01</day><month>04</month><year>2009</year></date><date date-type=\\"rev-recd\\"><day>02</day><month>05</month><year>2009</year></date></history><abstract abstract-type=\\"teaser\\"><p id=\\"p-2\\">The direct interaction of phenobarbital with the epidermal growth factor receptor reveals a new network interface in nuclear receptor signaling.</p></abstract><abstract><sec id=\\"sec-1\\" sec-type=\\"intro\\"><title>Introduction</title><p id=\\"p-3\\">This is a sectionalized abstract.</p></sec><sec id=\\"sec-2\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-4\\">These are the results of the experiment.</p></sec></abstract><kwd-group kwd-group-type=\\"author\\"><kwd>Paragraphs</kwd><kwd>exporting</kwd><kwd>testing</kwd><kwd>NLM DTD</kwd></kwd-group><counts><fig-count count=\\"1\\"/><ref-count count=\\"1\\"/><word-count count=\\"187\\"/></counts></article-meta></front><body><sec id=\\"sec-3\\" sec-type=\\"intro\\"><title>Introduction</title><sec id=\\"sec-4\\"><title>A level 2 subhead</title><sec id=\\"sec-5\\"><title>A level 3 subhead</title><sec id=\\"sec-6\\"><title>A level 4 subhead</title><sec id=\\"sec-7\\"><title>A level 5 subhead</title><p/></sec></sec></sec></sec></sec><sec id=\\"sec-8\\" sec-type=\\"methods\\"><title>Materials and Methods</title><p id=\\"p-5\\">Some more text</p></sec><sec id=\\"sec-9\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-6\\">Some text that introduces a poem:</p><p id=\\"p-7\\">Poetry Source: Wikipedia</p><p id=\\"p-8\\">You might1 peruse, e.g., <xref rid=\\"boxed-text-1\\">Box 1</xref>. See also .</p><boxed-text id=\\"boxed-text-1\\"><label>Box 1</label><caption><title>Boxed boxes.</title></caption><sec id=\\"sec-10\\"><title>Box_Head_1</title><sec id=\\"sec-11\\"><title>Box_Head_2</title><p id=\\"p-9\\">Box_Text<xref ref-type=\\"fn\\" rid=\\"fn-5\\">c</xref></p></sec></sec></boxed-text><p id=\\"p-10\\">See also, <xref ref-type=\\"bibr\\" rid=\\"ref-1\\"><sup>1</sup></xref> and . Kinds of tables This is a table title continued paragraph Table_Head Table_Body* * Table_Footnote Block_Quote Source: Wikipedia Paragraph_Continued with a graphic in the middlewhere the paragraph continues.</p><list list-type=\\"bullet\\"><list-item><p id=\\"p-11\\">Num_Bul_List_1</p><p id=\\"p-12\\">List_1_Continued</p><list list-type=\\"bullet\\"><list-item><p id=\\"p-13\\">Num_Bul_List_2</p><p id=\\"p-14\\">List_2_Continued</p></list-item></list></list-item><list-item><p id=\\"p-15\\">level 1, bullet 2</p></list-item></list></sec><sec id=\\"sec-12\\" sec-type=\\"discussion\\"><title>Discussion</title><p id=\\"p-16\\">ParagraphUnnumbered_List_1 Another unnumbered itemwith another paragraph that continues after a list.</p></sec><sec id=\\"sec-13\\" sec-type=\\"conclusions\\"><title>Conclusions</title><p id=\\"p-17\\">Paragraph</p></sec></body><back><app-group><app><sec id=\\"sec-14\\" sec-type=\\"appendices\\"><label>Appendix A</label><title>This is an appendix</title><sec id=\\"sec-15\\"><title>Appendix_Head_1</title><sec id=\\"sec-16\\"><title>Appendix_Head_2</title><p id=\\"p-18\\">Appendix_Text</p></sec></sec></sec></app></app-group><ack><title>Acknowledgements</title><p id=\\"p-19\\">Acknowledgement</p></ack><sec id=\\"sec-17\\" sec-type=\\"availability\\"><title>Data availability</title><p id=\\"p-20\\">This is some information about data availability.</p></sec><sec id=\\"sec-18\\" sec-type=\\"ethics-statement\\"><title>Ethics statement</title><p id=\\"p-21\\">Paragraph, see<xref ref-type=\\"fn\\" rid=\\"fn-4\\">b</xref> and <xref ref-type=\\"fig\\" rid=\\"fig-1\\">Figure 1</xref>.</p><fig id=\\"fig-1\\" fig-type=\\"half-right\\"><label>Figure 1</label><caption><p>A picture on the kinds of figures.</p><p>The Fig Caption continues.</p></caption><p id=\\"p-22\\">test paragraph</p><graphic xlink:href=\\"123412341234.fig1\\"/><attrib>Source: Wikipedia.</attrib></fig><fig id=\\"fig-2\\"><label>Figure 2</label><caption><p>A missing picture on the kinds of figures.</p><p>The Fig Caption continues.</p></caption><p id=\\"p-23\\">test paragraph</p><graphic specific-use=\\"MISSING\\" xlink:href=\\"\\"/><attrib>Source: Wikipedia.</attrib></fig></sec><fn-group><fn fn-type=\\"con\\"><label>Author Contributions</label><p id=\\"p-24\\">Author Contibutions are described here.</p></fn><fn fn-type=\\"financial-disclosure\\"><label>Financial Disclosure</label><p id=\\"p-25\\">This is a Financial Disclosure.</p></fn></fn-group><fn-group id=\\"fn-group-1\\"><title>Footnotes</title><fn id=\\"fn-3\\"><p id=\\"p-26\\">Box Note</p></fn><fn id=\\"fn-4\\"><p id=\\"p-27\\">This is a footnote.</p></fn><fn id=\\"fn-5\\"><p id=\\"p-28\\">Footnote called out in a box</p></fn></fn-group><ref-list><ref id=\\"ref-1\\"><label>1. </label><mixed-citation publication-type=\\"journal\\"><person-group person-group-type=\\"author\\"><string-name><surname>Day</surname> <given-names>RN</given-names></string-name></person-group>. <article-title>This is the article title</article-title>. <source><italic>EDCC</italic></source>. <year>2008</year>;<volume>3</volume><issue>(2)</issue>:<fpage>123</fpage>-<lpage>134</lpage>.</mixed-citation></ref></ref-list></back></article>"`;
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exports[`JATS exporter > export v1.1 > jats-export-1.1 1`] = `"<!DOCTYPE article PUBLIC \\"-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables with MathML3 v1.1 20151215//EN\\" \\"http://jats.nlm.nih.gov/archiving/1.1/JATS-archive-oasis-article1-mathml3.dtd\\"><article xmlns:xlink=\\"http://www.w3.org/1999/xlink\\" article-type=\\"research-article\\" xml:lang=\\"en\\"><front><article-meta><title-group><article-title>This is the Article Title</article-title><subtitle>Which has a Subtitle</subtitle></title-group><contrib-group content-type=\\"authors\\"><contrib contrib-type=\\"author\\" id=\\"contrib-1\\" corresp=\\"yes\\"><role>Member, IEEE</role><name><surname>Day</surname><given-names>Nathan</given-names></name><xref ref-type=\\"aff\\" rid=\\"aff-1\\"><sup>1</sup></xref><xref ref-type=\\"fn\\" rid=\\"fn-1\\"><sup>2</sup></xref><xref ref-type=\\"corresp\\" rid=\\"corresp-1\\"><sup>3</sup></xref></contrib><aff id=\\"aff-1\\"><label>1</label><institution>University of Life</institution>, <addr-line>Houston, TX</addr-line>, <city>Houston</city>, <state>TX</state>, <country>USA</country></aff></contrib-group><author-notes><corresp id=\\"corresp-1\\"><label>*</label>Correspondence: nday@inera.com.</corresp><fn id=\\"fn-1\\"><p>Author_Footnote.</p></fn><fn id=\\"fn-2\\"><p>DisclaimerThis is an unlabelled author footnote with a separate title.</p></fn><fn fn-type=\\"coi-statement\\"><label>Competing Interests</label><p id=\\"p-1\\">This is information about Competing Interests.</p></fn></author-notes><history><date date-type=\\"accepted\\"><day>12</day><month>05</month><year>2009</year></date><date date-type=\\"received\\"><day>01</day><month>04</month><year>2009</year></date><date date-type=\\"rev-recd\\"><day>02</day><month>05</month><year>2009</year></date></history><abstract abstract-type=\\"teaser\\"><p id=\\"p-2\\">The direct interaction of phenobarbital with the epidermal growth factor receptor reveals a new network interface in nuclear receptor signaling.</p></abstract><abstract><sec id=\\"sec-1\\" sec-type=\\"intro\\"><title>Introduction</title><p id=\\"p-3\\">This is a sectionalized abstract.</p></sec><sec id=\\"sec-2\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-4\\">These are the results of the experiment.</p></sec></abstract><kwd-group kwd-group-type=\\"author\\"><kwd>Paragraphs</kwd><kwd>exporting</kwd><kwd>testing</kwd><kwd>NLM DTD</kwd></kwd-group><counts><fig-count count=\\"1\\"/><ref-count count=\\"1\\"/><word-count count=\\"
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exports[`JATS exporter > export v1.1 > jats-export-1.1 1`] = `"<!DOCTYPE article PUBLIC \\"-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables with MathML3 v1.1 20151215//EN\\" \\"http://jats.nlm.nih.gov/archiving/1.1/JATS-archive-oasis-article1-mathml3.dtd\\"><article xmlns:xlink=\\"http://www.w3.org/1999/xlink\\" article-type=\\"research-article\\" xml:lang=\\"en\\"><front><article-meta><title-group><article-title>This is the Article Title</article-title><subtitle>Which has a Subtitle</subtitle></title-group><contrib-group content-type=\\"authors\\"><contrib contrib-type=\\"author\\" id=\\"contrib-1\\" corresp=\\"yes\\"><role>Member, IEEE</role><name><surname>Day</surname><given-names>Nathan</given-names></name><xref ref-type=\\"aff\\" rid=\\"aff-1\\"><sup>1</sup></xref><xref ref-type=\\"fn\\" rid=\\"fn-1\\"><sup>2</sup></xref><xref ref-type=\\"corresp\\" rid=\\"corresp-1\\"><sup>3</sup></xref></contrib><aff id=\\"aff-1\\"><label>1</label><institution>University of Life</institution>, <addr-line>Houston, TX</addr-line>, <city>Houston</city>, <state>TX</state>, <country>USA</country></aff></contrib-group><author-notes><corresp id=\\"corresp-1\\"><label>*</label>Correspondence: nday@inera.com.</corresp><fn id=\\"fn-1\\"><p>Author_Footnote.</p></fn><fn id=\\"fn-2\\"><p>DisclaimerThis is an unlabelled author footnote with a separate title.</p></fn><fn fn-type=\\"coi-statement\\"><label>Competing Interests</label><p id=\\"p-1\\">This is information about Competing Interests.</p></fn></author-notes><history><date date-type=\\"accepted\\"><day>12</day><month>05</month><year>2009</year></date><date date-type=\\"received\\"><day>01</day><month>04</month><year>2009</year></date><date date-type=\\"rev-recd\\"><day>02</day><month>05</month><year>2009</year></date></history><abstract abstract-type=\\"teaser\\"><p id=\\"p-2\\">The direct interaction of phenobarbital with the epidermal growth factor receptor reveals a new network interface in nuclear receptor signaling.</p></abstract><abstract><sec id=\\"sec-1\\" sec-type=\\"intro\\"><title>Introduction</title><p id=\\"p-3\\">This is a sectionalized abstract.</p></sec><sec id=\\"sec-2\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-4\\">These are the results of the experiment.</p></sec></abstract><kwd-group kwd-group-type=\\"author\\"><kwd>Paragraphs</kwd><kwd>exporting</kwd><kwd>testing</kwd><kwd>NLM DTD</kwd></kwd-group><counts><fig-count count=\\"1\\"/><ref-count count=\\"1\\"/><word-count count=\\"187\\"/></counts></article-meta></front><body><sec id=\\"sec-3\\" sec-type=\\"intro\\"><title>Introduction</title><sec id=\\"sec-4\\"><title>A level 2 subhead</title><sec id=\\"sec-5\\"><title>A level 3 subhead</title><sec id=\\"sec-6\\"><title>A level 4 subhead</title><sec id=\\"sec-7\\"><title>A level 5 subhead</title><p/></sec></sec></sec></sec></sec><sec id=\\"sec-8\\" sec-type=\\"methods\\"><title>Materials and Methods</title><p id=\\"p-5\\">Some more text</p></sec><sec id=\\"sec-9\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-6\\">Some text that introduces a poem:</p><p id=\\"p-7\\">Poetry Source: Wikipedia</p><p id=\\"p-8\\">You might1 peruse, e.g., <xref rid=\\"boxed-text-1\\">Box 1</xref>. See also .</p><boxed-text id=\\"boxed-text-1\\"><label>Box 1</label><caption><title>Boxed boxes.</title></caption><sec id=\\"sec-10\\"><title>Box_Head_1</title><sec id=\\"sec-11\\"><title>Box_Head_2</title><p id=\\"p-9\\">Box_Text<xref ref-type=\\"fn\\" rid=\\"fn-5\\">c</xref></p></sec></sec></boxed-text><p id=\\"p-10\\">See also, <xref ref-type=\\"bibr\\" rid=\\"ref-1\\"><sup>1</sup></xref> and . Kinds of tables This is a table title continued paragraph Table_Head Table_Body* * Table_Footnote Block_Quote Source: Wikipedia Paragraph_Continued with a graphic in the middlewhere the paragraph continues.</p><list list-type=\\"bullet\\"><list-item><p id=\\"p-11\\">Num_Bul_List_1</p><p id=\\"p-12\\">List_1_Continued</p><list list-type=\\"bullet\\"><list-item><p id=\\"p-13\\">Num_Bul_List_2</p><p id=\\"p-14\\">List_2_Continued</p></list-item></list></list-item><list-item><p id=\\"p-15\\">level 1, bullet 2</p></list-item></list></sec><sec id=\\"sec-12\\" sec-type=\\"discussion\\"><title>Discussion</title><p id=\\"p-16\\">ParagraphUnnumbered_List_1 Another unnumbered itemwith another paragraph that continues after a list.</p></sec><sec id=\\"sec-13\\" sec-type=\\"conclusions\\"><title>Conclusions</title><p id=\\"p-17\\">Paragraph</p></sec></body><back><app-group><app><sec id=\\"sec-14\\" sec-type=\\"appendices\\"><label>Appendix A</label><title>This is an appendix</title><sec id=\\"sec-15\\"><title>Appendix_Head_1</title><sec id=\\"sec-16\\"><title>Appendix_Head_2</title><p id=\\"p-18\\">Appendix_Text</p></sec></sec></sec></app></app-group><ack><title>Acknowledgements</title><p id=\\"p-19\\">Acknowledgement</p></ack><sec id=\\"sec-17\\" sec-type=\\"availability\\"><title>Data availability</title><p id=\\"p-20\\">This is some information about data availability.</p></sec><sec id=\\"sec-18\\" sec-type=\\"ethics-statement\\"><title>Ethics statement</title><p id=\\"p-21\\">Paragraph, see<xref ref-type=\\"fn\\" rid=\\"fn-4\\">b</xref> and <xref ref-type=\\"fig\\" rid=\\"fig-1\\">Figure 1</xref>.</p><fig id=\\"fig-1\\" fig-type=\\"half-right\\"><label>Figure 1</label><caption><p>A picture on the kinds of figures.</p><p>The Fig Caption continues.</p></caption><p id=\\"p-22\\">test paragraph</p><graphic xlink:href=\\"123412341234.fig1\\"/><attrib>Source: Wikipedia.</attrib></fig><fig id=\\"fig-2\\"><label>Figure 2</label><caption><p>A missing picture on the kinds of figures.</p><p>The Fig Caption continues.</p></caption><p id=\\"p-23\\">test paragraph</p><graphic specific-use=\\"MISSING\\" xlink:href=\\"\\"/><attrib>Source: Wikipedia.</attrib></fig></sec><fn-group><fn fn-type=\\"con\\"><label>Author Contributions</label><p id=\\"p-24\\">Author Contibutions are described here.</p></fn><fn fn-type=\\"financial-disclosure\\"><label>Financial Disclosure</label><p id=\\"p-25\\">This is a Financial Disclosure.</p></fn></fn-group><fn-group id=\\"fn-group-1\\"><title>Footnotes</title><fn id=\\"fn-3\\"><p id=\\"p-26\\">Box Note</p></fn><fn id=\\"fn-4\\"><p id=\\"p-27\\">This is a footnote.</p></fn><fn id=\\"fn-5\\"><p id=\\"p-28\\">Footnote called out in a box</p></fn></fn-group><ref-list><ref id=\\"ref-1\\"><label>1. </label><mixed-citation publication-type=\\"journal\\"><person-group person-group-type=\\"author\\"><string-name><surname>Day</surname> <given-names>RN</given-names></string-name></person-group>. <article-title>This is the article title</article-title>. <source><italic>EDCC</italic></source>. <year>2008</year>;<volume>3</volume><issue>(2)</issue>:<fpage>123</fpage>-<lpage>134</lpage>.</mixed-citation></ref></ref-list></back></article>"`;
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exports[`JATS exporter > export with & and < in bibliography metadata > jats-export-with-xml-unsafe-in-biblios 1`] = `"<!DOCTYPE article PUBLIC \\"-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables with MathML3 v1.2 20190208//EN\\" \\"http://jats.nlm.nih.gov/archiving/1.2/JATS-archive-oasis-article1-mathml3.dtd\\"><article xmlns:xlink=\\"http://www.w3.org/1999/xlink\\" article-type=\\"research-article\\" xml:lang=\\"en\\"><front><article-meta><title-group><article-title>This is the Article Title</article-title><subtitle>Which has a Subtitle</subtitle></title-group><contrib-group content-type=\\"authors\\"><contrib contrib-type=\\"author\\" id=\\"contrib-1\\" corresp=\\"yes\\"><role>Member, IEEE</role><name><surname>Day</surname><given-names>Nathan</given-names></name><xref ref-type=\\"aff\\" rid=\\"aff-1\\"><sup>1</sup></xref><xref ref-type=\\"fn\\" rid=\\"fn-1\\"><sup>2</sup></xref><xref ref-type=\\"corresp\\" rid=\\"corresp-1\\"><sup>3</sup></xref></contrib><aff id=\\"aff-1\\"><label>1</label><institution>University of Life</institution>, <addr-line>Houston, TX</addr-line>, <city>Houston</city>, <state>TX</state>, <country>USA</country></aff></contrib-group><author-notes><corresp id=\\"corresp-1\\"><label>*</label>Correspondence: nday@inera.com.</corresp><fn id=\\"fn-1\\"><p>Author_Footnote.</p></fn><fn id=\\"fn-2\\"><p>DisclaimerThis is an unlabelled author footnote with a separate title.</p></fn><fn fn-type=\\"coi-statement\\"><label>Competing Interests</label><p id=\\"p-1\\">This is information about Competing Interests.</p></fn></author-notes><history><date date-type=\\"accepted\\"><day>12</day><month>05</month><year>2009</year></date><date date-type=\\"received\\"><day>01</day><month>04</month><year>2009</year></date><date date-type=\\"rev-recd\\"><day>02</day><month>05</month><year>2009</year></date></history><abstract abstract-type=\\"teaser\\"><p id=\\"p-2\\">The direct interaction of phenobarbital with the epidermal growth factor receptor reveals a new network interface in nuclear receptor signaling.</p></abstract><abstract><sec id=\\"sec-1\\" sec-type=\\"intro\\"><title>Introduction</title><p id=\\"p-3\\">This is a sectionalized abstract.</p></sec><sec id=\\"sec-2\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-4\\">These are the results of the experiment.</p></sec></abstract><kwd-group kwd-group-type=\\"author\\"><kwd>Paragraphs</kwd><kwd>exporting</kwd><kwd>testing</kwd><kwd>NLM DTD</kwd></kwd-group><counts><fig-count count=\\"1\\"/><ref-count count=\\"1\\"/><word-count count=\\"
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exports[`JATS exporter > export with & and < in bibliography metadata > jats-export-with-xml-unsafe-in-biblios 1`] = `"<!DOCTYPE article PUBLIC \\"-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables with MathML3 v1.2 20190208//EN\\" \\"http://jats.nlm.nih.gov/archiving/1.2/JATS-archive-oasis-article1-mathml3.dtd\\"><article xmlns:xlink=\\"http://www.w3.org/1999/xlink\\" article-type=\\"research-article\\" xml:lang=\\"en\\"><front><article-meta><title-group><article-title>This is the Article Title</article-title><subtitle>Which has a Subtitle</subtitle></title-group><contrib-group content-type=\\"authors\\"><contrib contrib-type=\\"author\\" id=\\"contrib-1\\" corresp=\\"yes\\"><role>Member, IEEE</role><name><surname>Day</surname><given-names>Nathan</given-names></name><xref ref-type=\\"aff\\" rid=\\"aff-1\\"><sup>1</sup></xref><xref ref-type=\\"fn\\" rid=\\"fn-1\\"><sup>2</sup></xref><xref ref-type=\\"corresp\\" rid=\\"corresp-1\\"><sup>3</sup></xref></contrib><aff id=\\"aff-1\\"><label>1</label><institution>University of Life</institution>, <addr-line>Houston, TX</addr-line>, <city>Houston</city>, <state>TX</state>, <country>USA</country></aff></contrib-group><author-notes><corresp id=\\"corresp-1\\"><label>*</label>Correspondence: nday@inera.com.</corresp><fn id=\\"fn-1\\"><p>Author_Footnote.</p></fn><fn id=\\"fn-2\\"><p>DisclaimerThis is an unlabelled author footnote with a separate title.</p></fn><fn fn-type=\\"coi-statement\\"><label>Competing Interests</label><p id=\\"p-1\\">This is information about Competing Interests.</p></fn></author-notes><history><date date-type=\\"accepted\\"><day>12</day><month>05</month><year>2009</year></date><date date-type=\\"received\\"><day>01</day><month>04</month><year>2009</year></date><date date-type=\\"rev-recd\\"><day>02</day><month>05</month><year>2009</year></date></history><abstract abstract-type=\\"teaser\\"><p id=\\"p-2\\">The direct interaction of phenobarbital with the epidermal growth factor receptor reveals a new network interface in nuclear receptor signaling.</p></abstract><abstract><sec id=\\"sec-1\\" sec-type=\\"intro\\"><title>Introduction</title><p id=\\"p-3\\">This is a sectionalized abstract.</p></sec><sec id=\\"sec-2\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-4\\">These are the results of the experiment.</p></sec></abstract><kwd-group kwd-group-type=\\"author\\"><kwd>Paragraphs</kwd><kwd>exporting</kwd><kwd>testing</kwd><kwd>NLM DTD</kwd></kwd-group><counts><fig-count count=\\"1\\"/><ref-count count=\\"1\\"/><word-count count=\\"187\\"/></counts></article-meta></front><body><sec id=\\"sec-3\\" sec-type=\\"intro\\"><title>Introduction</title><sec id=\\"sec-4\\"><title>A level 2 subhead</title><sec id=\\"sec-5\\"><title>A level 3 subhead</title><sec id=\\"sec-6\\"><title>A level 4 subhead</title><sec id=\\"sec-7\\"><title>A level 5 subhead</title><p/></sec></sec></sec></sec></sec><sec id=\\"sec-8\\" sec-type=\\"methods\\"><title>Materials and Methods</title><p id=\\"p-5\\">Some more text</p></sec><sec id=\\"sec-9\\" sec-type=\\"results\\"><title>Results</title><p id=\\"p-6\\">Some text that introduces a poem:</p><p id=\\"p-7\\">Poetry Source: Wikipedia</p><p id=\\"p-8\\">You might1 peruse, e.g., <xref rid=\\"boxed-text-1\\">Box 1</xref>. 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