@manuscripts/transform 4.3.35 → 4.3.37

package/README.md

@@ -24,7 +24,7 @@ It provides a way to import/export [Manuscript JSON Schema](https://gitlab.com/m
 
 ### Manuscript JSON Schema to ProseMirror Model
 
-```typescript 
+```typescript
 import { Decoder, ContainedModel } from '@manuscripts/manuscript-transform'
 
 

package/dist/cjs/jats/__tests__/data/section-categories.js

@@ -89,7 +89,11 @@ exports.sectionCategories = [
             'competing interests',
         ],
         label: 'Conflict of Interest',
-        titles: ['Conflict of Interest Statement', 'COI Statement', 'Competing Interests'],
+        titles: [
+            'Conflict of Interest Statement',
+            'COI Statement',
+            'Competing Interests',
+        ],
         group: 'backmatter',
         isUnique: true,
     },

package/dist/cjs/jats/exporter/jats-exporter.js

@@ -1020,6 +1020,12 @@ class JATSExporter {
                 }
                 const $name = this.buildContributorName(contributor);
                 $contrib.appendChild($name);
+                if (contributor.attrs.suffix) {
+                    this.appendElement($name, 'suffix', contributor.attrs.suffix);
+                }
+                contributor.attrs.degrees?.forEach((degree) => {
+                    this.appendElement($contrib, 'degrees', degree);
+                });
                 if (contributor.attrs.email) {
                     this.appendElement($contrib, 'email', contributor.attrs.email);
                 }
@@ -1051,7 +1057,7 @@ class JATSExporter {
                     }
                     this.appendElement($contrib, 'role', credit.vocabTerm, {
                         'vocab-identifier': 'http://credit.niso.org/',
-                        'vocab': 'CRediT',
+                        vocab: 'CRediT',
                         'vocab-term': credit.vocabTerm,
                         'vocab-term-identifier': url,
                     });

package/dist/cjs/jats/importer/jats-dom-parser.js

@@ -406,6 +406,8 @@ class JATSDOMParser {
                         given: (0, utils_1.getTrimmedTextContent)(element, 'given-names'),
                         family: this.getSurname(element),
                         prefix: (0, utils_1.getTrimmedTextContent)(element, 'prefix'),
+                        suffix: (0, utils_1.getTrimmedTextContent)(element, 'suffix'),
+                        degrees: Array.from(element.querySelectorAll('degrees')).map((degree) => (0, utils_1.getTrimmedTextContent)(degree)) || [],
                         ORCID: (0, utils_1.getTrimmedTextContent)(element, 'contrib-id[contrib-id-type="orcid"]'),
                         creditRoles: (0, utils_1.getCreditRole)(element),
                         priority: this.parsePriority(element.getAttribute('priority')),

package/dist/cjs/jats/importer/jats-transformations.js

@@ -115,10 +115,10 @@ const moveAffiliations = (front, createElement) => {
     }
 };
 exports.moveAffiliations = moveAffiliations;
-const moveAbstracts = (front, group, createElement) => {
+const moveAbstracts = (front, group, createElement, sectionCategories) => {
     const abstracts = front.querySelectorAll('article-meta > abstract, article-meta > trans-abstract');
     abstracts.forEach((abstract) => {
-        const sec = createAbstractSection(abstract, createElement);
+        const sec = createAbstractSection(abstract, createElement, sectionCategories);
         removeNodeFromParent(abstract);
         group.appendChild(sec);
     });
@@ -148,9 +148,9 @@ const createBody = (doc, body, createElement) => {
     body.append(group);
 };
 exports.createBody = createBody;
-const createAbstracts = (front, body, createElement) => {
+const createAbstracts = (front, body, createElement, sectionCategories) => {
     const group = createSectionGroup('abstracts', createElement);
-    (0, exports.moveAbstracts)(front, group, createElement);
+    (0, exports.moveAbstracts)(front, group, createElement, sectionCategories);
     body.insertBefore(group, body.lastElementChild);
 };
 exports.createAbstracts = createAbstracts;
@@ -221,7 +221,7 @@ const moveCaptionsToEnd = (body) => {
     }
 };
 exports.moveCaptionsToEnd = moveCaptionsToEnd;
-const createAbstractSection = (abstract, createElement) => {
+const createAbstractSection = (abstract, createElement, sectionCategories) => {
     const abstractType = abstract.getAttribute('abstract-type');
     const sectionType = abstractType ? `abstract-${abstractType}` : 'abstract';
     let section = createElement('sec');
@@ -235,9 +235,15 @@ const createAbstractSection = (abstract, createElement) => {
     section.setAttribute('sec-type', sectionType);
     if (!abstract.querySelector(':scope > title')) {
         const title = createElement('title');
-        title.textContent = abstractType
-            ? `${capitalizeFirstLetter(abstractType.split('-').join(' '))} Abstract`
-            : 'Abstract';
+        const category = sectionCategories?.find((c) => c.id === sectionType || c.synonyms.includes(sectionType));
+        if (category?.titles[0]) {
+            title.textContent = category.titles[0];
+        }
+        else {
+            title.textContent = abstractType
+                ? `${capitalizeFirstLetter(abstractType.split('-').join(' '))} Abstract`
+                : 'Abstract';
+        }
         section.appendChild(title);
     }
     while (abstract.firstChild) {

package/dist/cjs/jats/importer/parse-jats-article.js

@@ -46,7 +46,7 @@ const processJATS = (doc, sectionCategories) => {
     }
     (0, jats_transformations_1.moveCaptionsToEnd)(body);
     (0, jats_transformations_1.createBody)(doc, body, createElement);
-    (0, jats_transformations_1.createAbstracts)(front, body, createElement);
+    (0, jats_transformations_1.createAbstracts)(front, body, createElement, sectionCategories);
     (0, jats_transformations_1.createBackmatter)(doc, body, sectionCategories, createElement);
     (0, jats_transformations_1.createSupplementaryMaterialsSection)(doc, body, createElement);
     (0, jats_transformations_1.createKeywordsSection)(doc, body, createElement);

package/dist/cjs/schema/nodes/contributor.js

@@ -14,6 +14,7 @@ exports.contributor = {
         family: { default: undefined },
         prefix: { default: undefined },
         suffix: { default: undefined },
+        degrees: { default: [] },
         email: { default: undefined },
         ORCID: { default: undefined },
         isCorresponding: { default: false },

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.VERSION = void 0;
-exports.VERSION = "4.3.35";
+exports.VERSION = "4.3.37";

package/dist/es/jats/__tests__/data/section-categories.js

@@ -86,7 +86,11 @@ export const sectionCategories = [
             'competing interests',
         ],
         label: 'Conflict of Interest',
-        titles: ['Conflict of Interest Statement', 'COI Statement', 'Competing Interests'],
+        titles: [
+            'Conflict of Interest Statement',
+            'COI Statement',
+            'Competing Interests',
+        ],
         group: 'backmatter',
         isUnique: true,
     },

package/dist/es/jats/exporter/jats-exporter.js

@@ -980,6 +980,12 @@ export class JATSExporter {
                 }
                 const $name = this.buildContributorName(contributor);
                 $contrib.appendChild($name);
+                if (contributor.attrs.suffix) {
+                    this.appendElement($name, 'suffix', contributor.attrs.suffix);
+                }
+                contributor.attrs.degrees?.forEach((degree) => {
+                    this.appendElement($contrib, 'degrees', degree);
+                });
                 if (contributor.attrs.email) {
                     this.appendElement($contrib, 'email', contributor.attrs.email);
                 }
@@ -1011,7 +1017,7 @@ export class JATSExporter {
                     }
                     this.appendElement($contrib, 'role', credit.vocabTerm, {
                         'vocab-identifier': 'http://credit.niso.org/',
-                        'vocab': 'CRediT',
+                        vocab: 'CRediT',
                         'vocab-term': credit.vocabTerm,
                         'vocab-term-identifier': url,
                     });

package/dist/es/jats/importer/jats-dom-parser.js

@@ -403,6 +403,8 @@ export class JATSDOMParser {
                         given: getTrimmedTextContent(element, 'given-names'),
                         family: this.getSurname(element),
                         prefix: getTrimmedTextContent(element, 'prefix'),
+                        suffix: getTrimmedTextContent(element, 'suffix'),
+                        degrees: Array.from(element.querySelectorAll('degrees')).map((degree) => getTrimmedTextContent(degree)) || [],
                         ORCID: getTrimmedTextContent(element, 'contrib-id[contrib-id-type="orcid"]'),
                         creditRoles: getCreditRole(element),
                         priority: this.parsePriority(element.getAttribute('priority')),

package/dist/es/jats/importer/jats-transformations.js

@@ -105,10 +105,10 @@ export const moveAffiliations = (front, createElement) => {
         front.parentNode?.insertBefore(affiliations, front);
     }
 };
-export const moveAbstracts = (front, group, createElement) => {
+export const moveAbstracts = (front, group, createElement, sectionCategories) => {
     const abstracts = front.querySelectorAll('article-meta > abstract, article-meta > trans-abstract');
     abstracts.forEach((abstract) => {
-        const sec = createAbstractSection(abstract, createElement);
+        const sec = createAbstractSection(abstract, createElement, sectionCategories);
         removeNodeFromParent(abstract);
         group.appendChild(sec);
     });
@@ -135,9 +135,9 @@ export const createBody = (doc, body, createElement) => {
     });
     body.append(group);
 };
-export const createAbstracts = (front, body, createElement) => {
+export const createAbstracts = (front, body, createElement, sectionCategories) => {
     const group = createSectionGroup('abstracts', createElement);
-    moveAbstracts(front, group, createElement);
+    moveAbstracts(front, group, createElement, sectionCategories);
     body.insertBefore(group, body.lastElementChild);
 };
 export const createBackmatter = (doc, body, sectionCategories, createElement) => {
@@ -205,7 +205,7 @@ export const moveCaptionsToEnd = (body) => {
         }
     }
 };
-const createAbstractSection = (abstract, createElement) => {
+const createAbstractSection = (abstract, createElement, sectionCategories) => {
     const abstractType = abstract.getAttribute('abstract-type');
     const sectionType = abstractType ? `abstract-${abstractType}` : 'abstract';
     let section = createElement('sec');
@@ -219,9 +219,15 @@ const createAbstractSection = (abstract, createElement) => {
     section.setAttribute('sec-type', sectionType);
     if (!abstract.querySelector(':scope > title')) {
         const title = createElement('title');
-        title.textContent = abstractType
-            ? `${capitalizeFirstLetter(abstractType.split('-').join(' '))} Abstract`
-            : 'Abstract';
+        const category = sectionCategories?.find((c) => c.id === sectionType || c.synonyms.includes(sectionType));
+        if (category?.titles[0]) {
+            title.textContent = category.titles[0];
+        }
+        else {
+            title.textContent = abstractType
+                ? `${capitalizeFirstLetter(abstractType.split('-').join(' '))} Abstract`
+                : 'Abstract';
+        }
         section.appendChild(title);
     }
     while (abstract.firstChild) {

package/dist/es/jats/importer/parse-jats-article.js

@@ -43,7 +43,7 @@ const processJATS = (doc, sectionCategories) => {
     }
     moveCaptionsToEnd(body);
     createBody(doc, body, createElement);
-    createAbstracts(front, body, createElement);
+    createAbstracts(front, body, createElement, sectionCategories);
     createBackmatter(doc, body, sectionCategories, createElement);
     createSupplementaryMaterialsSection(doc, body, createElement);
     createKeywordsSection(doc, body, createElement);

package/dist/es/schema/nodes/contributor.js

@@ -11,6 +11,7 @@ export const contributor = {
         family: { default: undefined },
         prefix: { default: undefined },
         suffix: { default: undefined },
+        degrees: { default: [] },
         email: { default: undefined },
         ORCID: { default: undefined },
         isCorresponding: { default: false },

package/dist/es/version.js

@@ -1 +1 @@
-export const VERSION = "4.3.35";
+export const VERSION = "4.3.37";

package/dist/types/jats/importer/jats-transformations.d.ts

@@ -22,10 +22,10 @@ export declare const moveAuthorNotes: (front: Element, createElement: CreateElem
 export declare const moveAwards: (front: Element) => void;
 export declare const moveContributors: (front: Element, createElement: CreateElement) => void;
 export declare const moveAffiliations: (front: Element, createElement: CreateElement) => void;
-export declare const moveAbstracts: (front: Element, group: Element, createElement: CreateElement) => void;
+export declare const moveAbstracts: (front: Element, group: Element, createElement: CreateElement, sectionCategories?: SectionCategory[]) => void;
 export declare const moveHeroImage: (doc: Document) => void;
 export declare const createBody: (doc: Document, body: Element, createElement: CreateElement) => void;
-export declare const createAbstracts: (front: Element, body: Element, createElement: CreateElement) => void;
+export declare const createAbstracts: (front: Element, body: Element, createElement: CreateElement, sectionCategories?: SectionCategory[]) => void;
 export declare const createBackmatter: (doc: Document, body: Element, sectionCategories: SectionCategory[], createElement: CreateElement) => void;
 export declare const moveCaptionsToEnd: (body: Element) => void;
 export declare const createKeywordsSection: (document: Document, body: Element, createElement: CreateElement) => void;

package/dist/types/schema/nodes/contributor.d.ts

@@ -16,6 +16,7 @@ export interface ContributorAttrs {
     suffix?: string;
     email?: string;
     ORCID?: string;
+    degrees: string[];
     isCorresponding: boolean;
     priority: number;
     isJointContributor: boolean;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const VERSION = "4.3.35";
+export declare const VERSION = "4.3.37";

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "4.3.35",
+  "version": "4.3.37",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",