@manuscripts/transform 4.3.21 → 4.3.23

package/dist/cjs/jats/importer/jats-dom-parser.js

@@ -1,22 +1,6 @@
 "use strict";
-/*!
- * © 2020 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.JATSDOMParser = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 const prosemirror_model_1 = require("prosemirror-model");
 const utils_1 = require("../../lib/utils");
 const xml_1 = require("../../lib/xml");
@@ -307,7 +291,8 @@ class JATSDOMParser {
                         id: element.getAttribute('id'),
                         target: element.getAttribute('target-id'),
                         contents: (0, utils_1.getTrimmedTextContent)(element),
-                        contributions: [(0, json_schema_1.buildContribution)(jats_comments_1.DEFAULT_PROFILE_ID)],
+                        userID: jats_comments_1.DEFAULT_PROFILE_ID,
+                        timestamp: Date.now(),
                     };
                 },
             },
@@ -381,9 +366,9 @@ class JATSDOMParser {
                 node: 'contributor',
                 getAttrs: (node) => {
                     const element = node;
-                    const footnote = [];
-                    const affiliations = [];
-                    const corresp = [];
+                    const footnoteIDs = [];
+                    const affiliationIDs = [];
+                    const correspIDs = [];
                     const xrefs = element.querySelectorAll('xref');
                     for (const xref of xrefs) {
                         const rid = xref.getAttribute('rid');
@@ -393,41 +378,30 @@ class JATSDOMParser {
                         }
                         switch (type) {
                             case 'fn':
-                                footnote.push({
-                                    noteID: rid,
-                                    noteLabel: (0, utils_1.getTrimmedTextContent)(xref) || '',
-                                });
+                                footnoteIDs.push(rid);
                                 break;
                             case 'corresp':
-                                corresp.push({
-                                    correspID: rid,
-                                    correspLabel: (0, utils_1.getTrimmedTextContent)(xref) || '',
-                                });
+                                correspIDs.push(rid);
                                 break;
                             case 'aff':
-                                affiliations.push(rid);
+                                affiliationIDs.push(rid);
                                 break;
                         }
                     }
                     return {
                         id: element.getAttribute('id') || undefined,
                         role: (0, utils_1.getTrimmedTextContent)(element, 'role'),
-                        affiliations,
-                        corresp,
-                        footnote,
-                        isCorresponding: element.getAttribute('corresp')
-                            ? element.getAttribute('corresp') === 'yes'
-                            : undefined,
-                        bibliographicName: {
-                            given: (0, utils_1.getTrimmedTextContent)(element, 'given-names'),
-                            family: this.getSurname(element),
-                            ObjectType: json_schema_1.ObjectTypes.BibliographicName,
-                        },
-                        ORCIDIdentifier: (0, utils_1.getTrimmedTextContent)(element, 'contrib-id[contrib-id-type="orcid"]'),
+                        affiliationIDs,
+                        correspIDs,
+                        footnoteIDs,
+                        isCorresponding: element.getAttribute('corresp') === 'yes',
+                        given: (0, utils_1.getTrimmedTextContent)(element, 'given-names'),
+                        family: this.getSurname(element),
+                        prefix: (0, utils_1.getTrimmedTextContent)(element, 'prefix'),
+                        ORCID: (0, utils_1.getTrimmedTextContent)(element, 'contrib-id[contrib-id-type="orcid"]'),
                         creditRoles: (0, utils_1.getCreditRole)(element),
                         priority: this.parsePriority(element.getAttribute('priority')),
                         email: (0, utils_1.getTrimmedTextContent)(element, 'email') || '',
-                        prefix: (0, utils_1.getTrimmedTextContent)(element, 'prefix'),
                     };
                 },
                 getContent: () => {

package/dist/cjs/jats/importer/jats-parser-utils.js

@@ -81,37 +81,13 @@ const updateNodeRIDS = (node, replacements, warnings) => {
     };
 };
 const updateContributorNodesIDS = (node, replacements, warnings) => {
-    if (node.type === schema_1.schema.nodes.contributor) {
-        const footnote = node.attrs.footnote
-            ?.map((fn) => {
-            return replacements.get(fn.noteID)
-                ? {
-                    ...fn,
-                    noteID: replacements.get(fn.noteID),
-                }
-                : undefined;
-        })
-            .filter(Boolean);
-        const corresp = node.attrs.corresp
-            ?.map((corresp) => {
-            return replacements.get(corresp.correspID)
-                ? {
-                    ...corresp,
-                    correspID: replacements.get(corresp.correspID),
-                }
-                : undefined;
-        })
-            .filter(Boolean);
-        const affiliations = node.attrs.affiliations
-            .map((affiliation) => {
-            return replacements.get(affiliation);
-        })
-            .filter(Boolean);
+    if ((0, schema_1.isContributorNode)(node)) {
+        const replaceAll = (ids) => ids?.map((i) => replacements.get(i)).filter((id) => !!id);
         node.attrs = {
             ...node.attrs,
-            footnote,
-            corresp,
-            affiliations,
+            footnoteIDs: replaceAll(node.attrs.footnoteIDs),
+            correspIDs: replaceAll(node.attrs.correspIDs),
+            affiliationIDs: replaceAll(node.attrs.affiliationIDs),
         };
     }
     if (node.type !== schema_1.schema.nodes.contributors) {

package/dist/cjs/jats/importer/parse-jats-article.js

@@ -19,7 +19,6 @@ exports.parseJATSArticle = void 0;
 const schema_1 = require("../../schema");
 const jats_comments_1 = require("./jats-comments");
 const jats_dom_parser_1 = require("./jats-dom-parser");
-const jats_journal_meta_parser_1 = require("./jats-journal-meta-parser");
 const jats_parser_utils_1 = require("./jats-parser-utils");
 const jats_transformations_1 = require("./jats-transformations");
 const processJATS = (doc, sectionCategories) => {
@@ -64,7 +63,6 @@ const processJATS = (doc, sectionCategories) => {
 };
 const createElementFn = (doc) => (tagName) => doc.createElement(tagName);
 const parseJATSArticle = (doc, sectionCategories, template) => {
-    const journal = (0, jats_journal_meta_parser_1.parseJournal)(doc);
     processJATS(doc, sectionCategories);
     const node = new jats_dom_parser_1.JATSDOMParser(sectionCategories, schema_1.schema).parse(doc)
         .firstChild;
@@ -75,9 +73,6 @@ const parseJATSArticle = (doc, sectionCategories, template) => {
     if (template) {
         node.attrs.prototype = template;
     }
-    return {
-        node,
-        journal,
-    };
+    return node;
 };
 exports.parseJATSArticle = parseJATSArticle;