@manuscripts/transform 3.0.55-LEAN-4433.0 → 3.0.55

package/dist/cjs/jats/exporter/jats-exporter.js

@@ -31,6 +31,12 @@ const schema_1 = require("../../schema");
 const transformer_1 = require("../../transformer");
 const jats_versions_1 = require("./jats-versions");
 const labels_1 = require("./labels");
+const publicationTypeToJats = {
+    article: 'journal',
+    'article-journal': 'journal',
+    webpage: 'web',
+    dataset: 'data',
+};
 const warn = (0, debug_1.default)('manuscripts-transform');
 const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
 const normalizeID = (id) => id.replace(/:/g, '_');
@@ -109,22 +115,7 @@ class JATSExporter {
                 if (!node) {
                     return undefined;
                 }
-                return {
-                    _id: node.attrs.id,
-                    issued: node.attrs.issued,
-                    DOI: node.attrs.doi,
-                    manuscriptID,
-                    objectType: json_schema_1.ObjectTypes.BibliographyItem,
-                    author: node.attrs.author,
-                    'container-title': node.attrs.containerTitle,
-                    volume: node.attrs.volume,
-                    issue: node.attrs.issue,
-                    supplement: node.attrs.supplement,
-                    page: node.attrs.page,
-                    title: node.attrs.title,
-                    literal: node.attrs.literal,
-                    type: node.attrs.type,
-                };
+                return Object.assign(Object.assign({}, node.attrs), { _id: node.attrs.id, manuscriptID, objectType: json_schema_1.ObjectTypes.BibliographyItem });
             };
         };
         this.nodesMap = new Map();
@@ -174,7 +165,7 @@ class JATSExporter {
             if (!JATSFragment.length) {
                 return null;
             }
-            const template = this.document.createElement('template');
+            const template = this.createElement('template');
             template.innerHTML = JATSFragment;
             return template.firstChild;
         };
@@ -220,15 +211,15 @@ class JATSExporter {
             }
         };
         this.buildFront = (journal) => {
-            const front = this.document.createElement('front');
-            const journalMeta = this.document.createElement('journal-meta');
+            const front = this.createElement('front');
+            const journalMeta = this.createElement('journal-meta');
             front.appendChild(journalMeta);
-            const articleMeta = this.document.createElement('article-meta');
+            const articleMeta = this.createElement('article-meta');
             front.appendChild(articleMeta);
             if (journal) {
                 if (journal.journalIdentifiers) {
                     for (const item of journal.journalIdentifiers) {
-                        const element = this.document.createElement('journal-id');
+                        const element = this.createElement('journal-id');
                         if (item.journalIDType) {
                             element.setAttribute('journal-id-type', item.journalIDType);
                         }
@@ -237,16 +228,16 @@ class JATSExporter {
                     }
                 }
                 if (journal.title || journal.abbreviatedTitles) {
-                    const parentElement = this.document.createElement('journal-title-group');
+                    const parentElement = this.createElement('journal-title-group');
                     journalMeta.appendChild(parentElement);
                     if (journal.title) {
-                        const element = this.document.createElement('journal-title');
+                        const element = this.createElement('journal-title');
                         element.textContent = journal.title;
                         parentElement.appendChild(element);
                     }
                     if (journal.abbreviatedTitles) {
                         for (const item of journal.abbreviatedTitles) {
-                            const element = this.document.createElement('abbrev-journal-title');
+                            const element = this.createElement('abbrev-journal-title');
                             if (item.abbrevType) {
                                 element.setAttribute('abbrev-type', item.abbrevType);
                             }
@@ -257,7 +248,7 @@ class JATSExporter {
                 }
                 if (journal.ISSNs) {
                     for (const item of journal.ISSNs) {
-                        const element = this.document.createElement('issn');
+                        const element = this.createElement('issn');
                         if (item.publicationType) {
                             element.setAttribute('pub-type', item.publicationType);
                         }
@@ -266,29 +257,29 @@ class JATSExporter {
                     }
                 }
                 if (journal.publisherName) {
-                    const publisher = this.document.createElement('publisher');
-                    const publisherName = this.document.createElement('publisher-name');
+                    const publisher = this.createElement('publisher');
+                    const publisherName = this.createElement('publisher-name');
                     publisherName.textContent = journal.publisherName;
                     publisher.appendChild(publisherName);
                     journalMeta.appendChild(publisher);
                 }
             }
             if (this.manuscriptNode.attrs.doi) {
-                const articleID = this.document.createElement('article-id');
+                const articleID = this.createElement('article-id');
                 articleID.setAttribute('pub-id-type', 'doi');
                 articleID.textContent = this.manuscriptNode.attrs.doi;
                 articleMeta.appendChild(articleID);
             }
-            const titleGroup = this.document.createElement('title-group');
+            const titleGroup = this.createElement('title-group');
             const titleNode = this.getFirstChildOfType(schema_1.schema.nodes.title);
             if (titleNode) {
-                const element = this.document.createElement('article-title');
+                const element = this.createElement('article-title');
                 this.setTitleContent(element, titleNode.textContent);
                 titleGroup.appendChild(element);
             }
             const altTitlesNodes = this.getChildrenOfType(schema_1.schema.nodes.alt_title);
             altTitlesNodes.forEach((titleNode) => {
-                const element = this.document.createElement('alt-title');
+                const element = this.createElement('alt-title');
                 element.setAttribute('alt-title-type', titleNode.attrs.type);
                 this.setTitleContent(element, titleNode.textContent);
                 titleGroup.appendChild(element);
@@ -298,20 +289,19 @@ class JATSExporter {
             const supplementsNodes = this.getChildrenOfType(schema_1.schema.nodes.supplement);
             supplementsNodes.forEach((node) => {
                 var _a, _b, _c, _d;
-                const supplementaryMaterial = this.document.createElement('supplementary-material');
+                const supplementaryMaterial = this.createElement('supplementary-material');
                 supplementaryMaterial.setAttribute('id', normalizeID(node.attrs.id));
                 supplementaryMaterial.setAttributeNS(XLINK_NAMESPACE, 'href', (_a = node.attrs.href) !== null && _a !== void 0 ? _a : '');
                 supplementaryMaterial.setAttribute('mimetype', (_b = node.attrs.mimeType) !== null && _b !== void 0 ? _b : '');
                 supplementaryMaterial.setAttribute('mime-subtype', (_c = node.attrs.mimeSubType) !== null && _c !== void 0 ? _c : '');
-                const caption = this.document.createElement('caption');
-                const title = this.document.createElement('title');
+                const caption = this.createElement('caption');
+                const title = this.createElement('title');
                 title.textContent = (_d = node.attrs.title) !== null && _d !== void 0 ? _d : '';
                 caption.append(title);
                 supplementaryMaterial.append(caption);
                 articleMeta.append(supplementaryMaterial);
             });
-            const history = articleMeta.querySelector('history') ||
-                this.document.createElement('history');
+            const history = articleMeta.querySelector('history') || this.createElement('history');
             if (this.manuscriptNode.attrs.acceptanceDate) {
                 const date = this.buildDateElement(this.manuscriptNode.attrs.acceptanceDate, 'accepted');
                 history.appendChild(date);
@@ -353,7 +343,7 @@ class JATSExporter {
             countingElements.push(this.buildCountingElement('word-count', wordCount));
             countingElements = countingElements.filter((el) => el);
             if (countingElements.length > 0) {
-                const counts = this.document.createElement('counts');
+                const counts = this.createElement('counts');
                 counts.append(...countingElements);
                 articleMeta.append(counts);
             }
@@ -362,7 +352,7 @@ class JATSExporter {
             }
             const selfUriAttachments = this.getChildrenOfType(schema_1.schema.nodes.attachment);
             selfUriAttachments.forEach((attachment) => {
-                const selfUriElement = this.document.createElement('self-uri');
+                const selfUriElement = this.createElement('self-uri');
                 selfUriElement.setAttribute('content-type', attachment.attrs.type);
                 selfUriElement.setAttributeNS(XLINK_NAMESPACE, 'href', attachment.attrs.href);
                 const insertBeforeElements = articleMeta.querySelector('related-article, related-object, abstract, trans-abstract, kwd-group, funding-group, support-group, conference, counts, custom-meta-group');
@@ -373,7 +363,7 @@ class JATSExporter {
             return front;
         };
         this.buildDateElement = (timestamp, type) => {
-            const dateElement = this.document.createElement('date');
+            const dateElement = this.createElement('date');
             dateElement.setAttribute('date-type', type);
             const date = new Date(timestamp * 1000);
             const lookup = {
@@ -382,7 +372,7 @@ class JATSExporter {
                 day: date.getUTCDate().toString().padStart(2, '0'),
             };
             for (const [key, value] of Object.entries(lookup).reverse()) {
-                const el = this.document.createElement(key);
+                const el = this.createElement(key);
                 el.textContent = value;
                 dateElement.appendChild(el);
             }
@@ -390,13 +380,13 @@ class JATSExporter {
         };
         this.buildCountingElement = (tagName, count) => {
             if (count) {
-                const wordCount = this.document.createElement(tagName);
+                const wordCount = this.createElement(tagName);
                 wordCount.setAttribute('count', String(count));
                 return wordCount;
             }
         };
         this.buildBody = () => {
-            const body = this.document.createElement('body');
+            const body = this.createElement('body');
             this.manuscriptNode.forEach((cFragment) => {
                 const serializedNode = this.serializeNode(cFragment);
                 body.append(...serializedNode.childNodes);
@@ -405,7 +395,7 @@ class JATSExporter {
             return body;
         };
         this.buildBack = (body) => {
-            const back = this.document.createElement('back');
+            const back = this.createElement('back');
             this.moveSectionsToBack(back, body);
             const footnotesElements = this.document.querySelectorAll('sec > fn-group');
             for (const footnotesElement of footnotesElements) {
@@ -424,7 +414,7 @@ class JATSExporter {
             let refList = this.document.querySelector('ref-list');
             if (!refList) {
                 warn('No bibliography element, creating a ref-list anyway');
-                refList = this.document.createElement('ref-list');
+                refList = this.createElement('ref-list');
             }
             back.appendChild(refList);
             const bibliographyItems = this.getChildrenOfType(schema_1.schema.nodes.bibliography_item);
@@ -434,163 +424,159 @@ class JATSExporter {
                 if (!bibliographyItem) {
                     continue;
                 }
-                const ref = this.document.createElement('ref');
+                const ref = this.createElement('ref');
                 ref.setAttribute('id', normalizeID(id));
-                const updateCitationPubType = (citationEl, pubType) => {
-                    if (pubType) {
-                        switch (pubType) {
-                            case 'article':
-                            case 'article-journal':
-                                citationEl.setAttribute('publication-type', 'journal');
-                                break;
-                            default:
-                                citationEl.setAttribute('publication-type', pubType);
-                                break;
-                        }
-                    }
-                    else {
-                        citationEl.setAttribute('publication-type', 'journal');
-                    }
-                };
+                const getPublicationType = (pubType) => publicationTypeToJats[pubType !== null && pubType !== void 0 ? pubType : ''] || pubType || 'journal';
                 if (bibliographyItem.attrs.literal) {
-                    const mixedCitation = this.document.createElement('mixed-citation');
-                    updateCitationPubType(mixedCitation, bibliographyItem.attrs.type);
-                    mixedCitation.textContent = bibliographyItem.attrs.literal;
-                    ref.appendChild(mixedCitation);
-                    refList.appendChild(ref);
+                    this.appendElement(ref, 'mixed-citation', bibliographyItem.attrs.literal, {
+                        'publication-type': getPublicationType(bibliographyItem.attrs.type),
+                    });
                 }
                 else {
-                    const citation = this.document.createElement('element-citation');
-                    updateCitationPubType(citation, bibliographyItem.attrs.type);
-                    if (bibliographyItem.attrs.author) {
-                        const personGroupNode = this.document.createElement('person-group');
-                        personGroupNode.setAttribute('person-group-type', 'author');
-                        citation.appendChild(personGroupNode);
-                        bibliographyItem.attrs.author.forEach((author) => {
-                            const name = this.document.createElement('string-name');
-                            if (author.family) {
-                                const node = this.document.createElement('surname');
-                                node.textContent = author.family;
-                                name.appendChild(node);
-                            }
-                            if (author.given) {
-                                const node = this.document.createElement('given-names');
-                                node.textContent = author.given;
-                                name.appendChild(node);
-                            }
-                            if (name.hasChildNodes()) {
-                                personGroupNode.appendChild(name);
-                            }
-                            if (author.literal) {
-                                const collab = this.document.createElement('collab');
-                                collab.textContent = author.literal;
-                                personGroupNode.appendChild(collab);
-                            }
-                        });
-                    }
-                    if (bibliographyItem.attrs.issued) {
-                        const dateParts = bibliographyItem.attrs.issued['date-parts'];
-                        if (dateParts && dateParts.length) {
-                            const [[year, month, day]] = dateParts;
-                            if (year) {
-                                const node = this.document.createElement('year');
-                                node.textContent = String(year);
-                                citation.appendChild(node);
-                            }
-                            if (month) {
-                                const node = this.document.createElement('month');
-                                node.textContent = String(month);
-                                citation.appendChild(node);
-                            }
-                            if (day) {
-                                const node = this.document.createElement('day');
-                                node.textContent = String(day);
-                                citation.appendChild(node);
-                            }
-                        }
-                    }
-                    if (bibliographyItem.attrs.title) {
-                        const node = this.document.createElement('article-title');
-                        this.setTitleContent(node, bibliographyItem.attrs.title);
-                        citation.appendChild(node);
-                    }
-                    if (bibliographyItem.attrs.containerTitle) {
-                        const node = this.document.createElement('source');
-                        this.setTitleContent(node, bibliographyItem.attrs.containerTitle);
-                        citation.appendChild(node);
-                    }
-                    if (bibliographyItem.attrs.volume) {
-                        const node = this.document.createElement('volume');
-                        node.textContent = String(bibliographyItem.attrs.volume);
-                        citation.appendChild(node);
-                    }
-                    if (bibliographyItem.attrs.issue) {
-                        const node = this.document.createElement('issue');
-                        node.textContent = String(bibliographyItem.attrs.issue);
-                        citation.appendChild(node);
-                    }
-                    if (bibliographyItem.attrs.supplement) {
-                        const node = this.document.createElement('supplement');
-                        node.textContent = bibliographyItem.attrs.supplement;
-                        citation.appendChild(node);
-                    }
-                    if (bibliographyItem.attrs.page) {
-                        const pageString = String(bibliographyItem.attrs.page);
-                        if (/^\d+$/.test(pageString)) {
-                            const node = this.document.createElement('fpage');
-                            node.textContent = pageString;
-                            citation.appendChild(node);
-                        }
-                        else if (/^\d+-\d+$/.test(pageString)) {
-                            const [fpage, lpage] = pageString.split('-');
-                            const fpageNode = this.document.createElement('fpage');
-                            fpageNode.textContent = fpage;
-                            citation.appendChild(fpageNode);
-                            const lpageNode = this.document.createElement('lpage');
-                            lpageNode.textContent = lpage;
-                            citation.appendChild(lpageNode);
-                        }
-                        else {
-                            const node = this.document.createElement('page-range');
-                            node.textContent = pageString;
-                            citation.appendChild(node);
+                    const citation = this.appendElement(ref, 'element-citation', undefined, {
+                        'publication-type': getPublicationType(bibliographyItem.attrs.type),
+                    });
+                    const attributeHandlers = {
+                        author: (v) => this.processRefPersonGroup(citation, 'author', v),
+                        editor: (v) => this.processRefPersonGroup(citation, 'editor', v),
+                        title: (v) => this.setTitleContent(this.appendElement(citation, 'article-title'), v),
+                        'container-title': (v) => this.setTitleContent(this.appendElement(citation, 'source'), v),
+                        issued: ({ 'date-parts': parts }) => this.processDateParts(citation, parts),
+                        volume: (v) => this.appendElement(citation, 'volume', v),
+                        issue: (v) => this.appendElement(citation, 'issue', v),
+                        supplement: (v) => this.appendElement(citation, 'supplement', v),
+                        page: (v) => this.processPageString(citation, String(v)),
+                        DOI: (v) => this.appendElement(citation, 'pub-id', v, { 'pub-id-type': 'doi' }),
+                        std: (v) => this.appendElement(citation, 'pub-id', v, {
+                            'pub-id-type': 'std-designation',
+                        }),
+                        'collection-title': (v) => this.appendElement(citation, 'series', v),
+                        edition: (v) => this.appendElement(citation, 'edition', v),
+                        'publisher-place': (v) => this.appendElement(citation, 'publisher-loc', v),
+                        publisher: (v) => this.appendElement(citation, 'publisher-name', v),
+                        event: (v) => this.appendElement(citation, 'conf-name', v),
+                        'event-place': (v) => this.appendElement(citation, 'conf-loc', v),
+                        'number-of-pages': (v) => this.appendElement(citation, 'size', v, { units: 'pages' }),
+                        institution: (v) => this.appendElement(citation, 'institution', v),
+                        locator: (v) => this.appendElement(citation, 'elocation-id', v),
+                        URL: (v) => this.appendElement(citation, 'ext-link', v, {
+                            'ext-link-type': 'uri',
+                        }),
+                        'event-date': (v) => this.processDate(citation, 'conf-date', v),
+                        accessed: (v) => this.processDate(citation, 'date-in-citation', v),
+                    };
+                    Object.entries(attributeHandlers).forEach(([key, handler]) => {
+                        const value = bibliographyItem.attrs[key];
+                        if (value) {
+                            handler(value);
                         }
-                    }
-                    if (bibliographyItem.attrs.doi) {
-                        const node = this.document.createElement('pub-id');
-                        node.setAttribute('pub-id-type', 'doi');
-                        node.textContent = String(bibliographyItem.attrs.doi);
-                        citation.appendChild(node);
-                    }
-                    ref.appendChild(citation);
-                    refList.appendChild(ref);
+                    });
                 }
+                refList.appendChild(ref);
             }
             return back;
         };
+        this.processDateParts = (parent, dateParts) => {
+            const [[year, month, day]] = dateParts;
+            if (year) {
+                this.appendElement(parent, 'year', String(year));
+            }
+            if (month) {
+                this.appendElement(parent, 'month', String(month));
+            }
+            if (day) {
+                this.appendElement(parent, 'day', String(day));
+            }
+        };
+        this.processPageString = (parent, page) => {
+            const numPattern = /^\d+$/;
+            const rangePattern = /^(\d+)-(\d+)$/;
+            if (numPattern.test(page)) {
+                this.appendElement(parent, 'fpage', page);
+            }
+            else if (rangePattern.test(page)) {
+                const [fpage, lpage] = page.split('-');
+                this.appendElement(parent, 'fpage', fpage);
+                this.appendElement(parent, 'lpage', lpage);
+            }
+            else {
+                this.appendElement(parent, 'page-range', page);
+            }
+        };
+        this.processDate = (parent, tag, date) => {
+            const buildISODate = (date) => {
+                const dateParts = date['date-parts'];
+                if (dateParts && dateParts.length) {
+                    const [[year, month, day]] = dateParts;
+                    if (year && month && day) {
+                        return new Date(Date.UTC(Number(year), Number(month) - 1, Number(day)));
+                    }
+                }
+            };
+            const isoDate = buildISODate(date);
+            if (!isoDate) {
+                return;
+            }
+            return this.appendElement(parent, tag, isoDate.toDateString(), {
+                'iso-8601-date': isoDate.toISOString(),
+            });
+        };
+        this.processRefPersonGroup = (citation, type, people) => {
+            if (!(people === null || people === void 0 ? void 0 : people.length)) {
+                return;
+            }
+            const group = this.appendElement(citation, 'person-group', undefined, {
+                'person-group-type': type,
+            });
+            people.forEach((person) => {
+                if (person.literal) {
+                    this.appendElement(group, 'collab', person.literal);
+                    return;
+                }
+                const name = this.createElement('string-name');
+                if (person.family) {
+                    this.appendElement(name, 'surname', person.family);
+                }
+                if (person.given) {
+                    this.appendElement(name, 'given-names', person.given);
+                }
+                if (name.childNodes.length) {
+                    group.appendChild(name);
+                }
+            });
+        };
+        this.createElement = (tag, content, attrs) => {
+            const el = this.document.createElement(tag);
+            if (content) {
+                el.textContent = content;
+            }
+            if (attrs) {
+                Object.entries(attrs).forEach(([k, v]) => el.setAttribute(k, v));
+            }
+            return el;
+        };
+        this.appendElement = (parent, tag, content, attrs) => {
+            const el = this.createElement(tag, content, attrs);
+            parent.appendChild(el);
+            return el;
+        };
         this.createSerializer = () => {
             const nodes = {
                 alt_text: (node) => {
-                    if (node.textContent) {
-                        const altText = this.document.createElement('alt-text');
-                        altText.textContent = node.textContent;
-                        return altText;
-                    }
-                    return '';
+                    const altText = this.createElement('alt-text');
+                    altText.textContent = node.textContent;
+                    return altText;
                 },
                 long_desc: (node) => {
-                    if (node.textContent) {
-                        const longDesc = this.document.createElement('long-desc');
-                        longDesc.textContent = node.textContent;
-                        return longDesc;
-                    }
-                    return '';
+                    const longDesc = this.createElement('long-desc');
+                    longDesc.textContent = node.textContent;
+                    return longDesc;
                 },
                 attachment: () => '',
                 attachments: () => '',
                 image_element: (node) => createImage(node),
                 embed: (node) => {
-                    const mediaElement = this.document.createElement('media');
+                    const mediaElement = this.createElement('media');
                     const { id, href, mimetype, mimeSubtype } = node.attrs;
                     mediaElement.setAttribute('id', normalizeID(id));
                     mediaElement.setAttributeNS(XLINK_NAMESPACE, 'show', 'embed');
@@ -612,7 +598,7 @@ class JATSExporter {
                 awards: () => ['funding-group', 0],
                 award: (node) => {
                     const awardGroup = node;
-                    const awardGroupElement = this.document.createElement('award-group');
+                    const awardGroupElement = this.createElement('award-group');
                     awardGroupElement.setAttribute('id', normalizeID(awardGroup.attrs.id));
                     appendChildIfPresent(awardGroupElement, 'funding-source', awardGroup.attrs.source);
                     awardGroup.attrs.code
@@ -670,7 +656,7 @@ class JATSExporter {
                     if (!rids.length) {
                         return '';
                     }
-                    const xref = this.document.createElement('xref');
+                    const xref = this.createElement('xref');
                     xref.setAttribute('ref-type', 'bibr');
                     xref.setAttribute('rid', normalizeID(rids.join(' ')));
                     const citationTextContent = this.citationTexts.get(node.attrs.id);
@@ -694,7 +680,7 @@ class JATSExporter {
                         warn('');
                         return text || '';
                     }
-                    const xref = this.document.createElement('xref');
+                    const xref = this.createElement('xref');
                     const type = chooseRefType(target.type);
                     if (type) {
                         xref.setAttribute('ref-type', type);
@@ -711,19 +697,19 @@ class JATSExporter {
                     return this.createEquation(node);
                 },
                 general_table_footnote: (node) => {
-                    const el = this.document.createElement('general-table-footnote');
+                    const el = this.createElement('general-table-footnote');
                     el.setAttribute('id', normalizeID(node.attrs.id));
                     processChildNodes(el, node, schema_1.schema.nodes.general_table_footnote);
                     return el;
                 },
                 inline_equation: (node) => {
-                    const eqElement = this.document.createElement('inline-formula');
+                    const eqElement = this.createElement('inline-formula');
                     const equation = this.createEquation(node, true);
                     eqElement.append(equation);
                     return eqElement;
                 },
                 equation_element: (node) => {
-                    const eqElement = this.document.createElement('disp-formula');
+                    const eqElement = this.createElement('disp-formula');
                     eqElement.setAttribute('id', normalizeID(node.attrs.id));
                     processChildNodes(eqElement, node, schema_1.schema.nodes.equation);
                     return eqElement;
@@ -760,7 +746,7 @@ class JATSExporter {
                 highlight_marker: () => '',
                 inline_footnote: (node) => {
                     const rids = node.attrs.rids;
-                    const xref = this.document.createElement('xref');
+                    const xref = this.createElement('xref');
                     xref.setAttribute('ref-type', 'fn');
                     xref.setAttribute('rid', normalizeID(rids.join(' ')));
                     xref.textContent = rids
@@ -779,7 +765,7 @@ class JATSExporter {
                     if (!node.attrs.href) {
                         return text;
                     }
-                    const linkNode = this.document.createElement('ext-link');
+                    const linkNode = this.createElement('ext-link');
                     linkNode.setAttribute('ext-link-type', 'uri');
                     linkNode.setAttributeNS(XLINK_NAMESPACE, 'href', node.attrs.href);
                     linkNode.textContent = text;
@@ -790,7 +776,7 @@ class JATSExporter {
                 },
                 list_item: () => ['list-item', 0],
                 listing: (node) => {
-                    const code = this.document.createElement('code');
+                    const code = this.createElement('code');
                     code.setAttribute('id', normalizeID(node.attrs.id));
                     code.setAttribute('language', node.attrs.languageKey);
                     code.textContent = node.attrs.contents;
@@ -799,7 +785,7 @@ class JATSExporter {
                 listing_element: (node) => createFigureElement(node, node.type.schema.nodes.listing),
                 manuscript: (node) => ['article', { id: normalizeID(node.attrs.id) }, 0],
                 missing_figure: () => {
-                    const graphic = this.document.createElement('graphic');
+                    const graphic = this.createElement('graphic');
                     graphic.setAttribute('specific-use', 'MISSING');
                     graphic.setAttributeNS(XLINK_NAMESPACE, 'xlink:href', '');
                     return graphic;
@@ -818,10 +804,10 @@ class JATSExporter {
                     return ['p', attrs, 0];
                 },
                 placeholder: () => {
-                    return this.document.createElement('boxed-text');
+                    return this.createElement('boxed-text');
                 },
                 placeholder_element: () => {
-                    return this.document.createElement('boxed-text');
+                    return this.createElement('boxed-text');
                 },
                 pullquote_element: (node) => {
                     var _a;
@@ -892,7 +878,7 @@ class JATSExporter {
                 if (!textContent) {
                     return;
                 }
-                const element = this.document.createElement(tagName);
+                const element = this.createElement(tagName);
                 element.textContent = textContent;
                 parent.appendChild(element);
             };
@@ -912,7 +898,7 @@ class JATSExporter {
                 });
             };
             const createElement = (node, nodeName) => {
-                const element = this.document.createElement(nodeName);
+                const element = this.createElement(nodeName);
                 element.setAttribute('id', normalizeID(node.attrs.id));
                 return element;
             };
@@ -920,7 +906,7 @@ class JATSExporter {
                 if (this.labelTargets) {
                     const target = this.labelTargets.get(node.attrs.id);
                     if (target) {
-                        const label = this.document.createElement('label');
+                        const label = this.createElement('label');
                         label.textContent = target.label;
                         element.appendChild(label);
                     }
@@ -928,7 +914,7 @@ class JATSExporter {
             };
             const appendAttributions = (element, node) => {
                 if (node.attrs.attribution) {
-                    const attribution = this.document.createElement('attrib');
+                    const attribution = this.createElement('attrib');
                     attribution.textContent = node.attrs.attribution.literal;
                     element.appendChild(attribution);
                 }
@@ -946,7 +932,7 @@ class JATSExporter {
                     return;
                 }
                 const table = this.serializeNode(tableNode);
-                const tbodyElement = this.document.createElement('tbody');
+                const tbodyElement = this.createElement('tbody');
                 while (table.firstChild) {
                     const child = table.firstChild;
                     table.removeChild(child);
@@ -984,7 +970,7 @@ class JATSExporter {
                 return '';
             };
             const createGraphic = (node) => {
-                const graphic = this.document.createElement('graphic');
+                const graphic = this.createElement('graphic');
                 graphic.setAttributeNS(XLINK_NAMESPACE, 'xlink:href', node.attrs.src);
                 if (!isChildOfNodeType(node.attrs.id, schema_1.schema.nodes.figure_element) &&
                     node.attrs.type) {
@@ -1030,10 +1016,10 @@ class JATSExporter {
                 if (listingNode) {
                     const { contents, languageKey } = listingNode.attrs;
                     if (contents && languageKey) {
-                        const listing = this.document.createElement('fig');
+                        const listing = this.createElement('fig');
                         listing.setAttribute('specific-use', 'source');
                         element.appendChild(listing);
-                        const code = this.document.createElement('code');
+                        const code = this.createElement('code');
                         code.setAttribute('executable', 'true');
                         code.setAttribute('language', languageKey);
                         code.textContent = contents;
@@ -1069,17 +1055,17 @@ class JATSExporter {
                     label = affiliationLabels.size + 1;
                     affiliationLabels.set(rid, label);
                 }
-                const sup = this.document.createElement('sup');
+                const sup = this.createElement('sup');
                 sup.textContent = String(label);
                 return sup;
             };
             const createFootNotesLabels = (content) => {
-                const sup = this.document.createElement('sup');
+                const sup = this.createElement('sup');
                 sup.textContent = String(content);
                 return sup;
             };
             if (authorContributorNodes.length) {
-                const contribGroup = this.document.createElement('contrib-group');
+                const contribGroup = this.createElement('contrib-group');
                 contribGroup.setAttribute('content-type', 'authors');
                 articleMeta.appendChild(contribGroup);
                 authorContributorNodes.forEach((contributor) => {
@@ -1090,14 +1076,14 @@ class JATSExporter {
                         warn(error.message);
                         return;
                     }
-                    const contrib = this.document.createElement('contrib');
+                    const contrib = this.createElement('contrib');
                     contrib.setAttribute('contrib-type', 'author');
                     contrib.setAttribute('id', normalizeID(contributor.attrs.id));
                     if (contributor.attrs.isCorresponding) {
                         contrib.setAttribute('corresp', 'yes');
                     }
                     if (contributor.attrs.ORCIDIdentifier) {
-                        const identifier = this.document.createElement('contrib-id');
+                        const identifier = this.createElement('contrib-id');
                         identifier.setAttribute('contrib-id-type', 'orcid');
                         identifier.textContent = contributor.attrs.ORCIDIdentifier;
                         contrib.appendChild(identifier);
@@ -1105,13 +1091,13 @@ class JATSExporter {
                     const name = this.buildContributorName(contributor);
                     contrib.appendChild(name);
                     if (contributor.attrs.email) {
-                        const email = this.document.createElement('email');
+                        const email = this.createElement('email');
                         email.textContent = contributor.attrs.email;
                         contrib.appendChild(email);
                     }
                     if (contributor.attrs.affiliations) {
                         contributor.attrs.affiliations.forEach((rid) => {
-                            const xref = this.document.createElement('xref');
+                            const xref = this.createElement('xref');
                             xref.setAttribute('ref-type', 'aff');
                             xref.setAttribute('rid', normalizeID(rid));
                             xref.appendChild(creatAffiliationLabel(rid));
@@ -1120,7 +1106,7 @@ class JATSExporter {
                     }
                     if (contributor.attrs.footnote) {
                         contributor.attrs.footnote.map((note) => {
-                            const xref = this.document.createElement('xref');
+                            const xref = this.createElement('xref');
                             xref.setAttribute('ref-type', 'fn');
                             xref.setAttribute('rid', normalizeID(note.noteID));
                             xref.appendChild(createFootNotesLabels(note.noteLabel));
@@ -1129,7 +1115,7 @@ class JATSExporter {
                     }
                     if (contributor.attrs.corresp) {
                         contributor.attrs.corresp.map((corresp) => {
-                            const xref = this.document.createElement('xref');
+                            const xref = this.createElement('xref');
                             xref.setAttribute('ref-type', 'corresp');
                             xref.setAttribute('rid', normalizeID(corresp.correspID));
                             xref.appendChild(createFootNotesLabels(corresp.correspLabel));
@@ -1139,7 +1125,7 @@ class JATSExporter {
                     contribGroup.appendChild(contrib);
                 });
                 if (otherContributorsNodes.length) {
-                    const contribGroup = this.document.createElement('contrib-group');
+                    const contribGroup = this.createElement('contrib-group');
                     articleMeta.appendChild(contribGroup);
                     otherContributorsNodes.forEach((contributor) => {
                         try {
@@ -1149,18 +1135,18 @@ class JATSExporter {
                             warn(error.message);
                             return;
                         }
-                        const contrib = this.document.createElement('contrib');
+                        const contrib = this.createElement('contrib');
                         contrib.setAttribute('id', normalizeID(contributor.attrs.id));
                         const name = this.buildContributorName(contributor);
                         contrib.appendChild(name);
                         if (contributor.attrs.email) {
-                            const email = this.document.createElement('email');
+                            const email = this.createElement('email');
                             email.textContent = contributor.attrs.email;
                             contrib.appendChild(email);
                         }
                         if (contributor.attrs.affiliations) {
                             contributor.attrs.affiliations.forEach((rid) => {
-                                const xref = this.document.createElement('xref');
+                                const xref = this.createElement('xref');
                                 xref.setAttribute('ref-type', 'aff');
                                 xref.setAttribute('rid', normalizeID(rid));
                                 xref.appendChild(creatAffiliationLabel(rid));
@@ -1169,7 +1155,7 @@ class JATSExporter {
                         }
                         if (contributor.attrs.footnote) {
                             contributor.attrs.footnote.map((note) => {
-                                const xref = this.document.createElement('xref');
+                                const xref = this.createElement('xref');
                                 xref.setAttribute('ref-type', 'fn');
                                 xref.setAttribute('rid', normalizeID(note.noteID));
                                 xref.appendChild(createFootNotesLabels(note.noteLabel));
@@ -1196,54 +1182,54 @@ class JATSExporter {
                         affiliationRIDs.indexOf(b.attrs.id));
                     usedAffiliations.forEach((affiliation) => {
                         var _a, _b;
-                        const aff = this.document.createElement('aff');
+                        const aff = this.createElement('aff');
                         aff.setAttribute('id', normalizeID(affiliation.attrs.id));
                         contribGroup.appendChild(aff);
                         if (affiliation.attrs.department) {
-                            const department = this.document.createElement('institution');
+                            const department = this.createElement('institution');
                             department.setAttribute('content-type', 'dept');
                             department.textContent = affiliation.attrs.department;
                             aff.appendChild(department);
                         }
                         if (affiliation.attrs.institution) {
-                            const institution = this.document.createElement('institution');
+                            const institution = this.createElement('institution');
                             institution.textContent = affiliation.attrs.institution;
                             aff.appendChild(institution);
                         }
                         if (affiliation.attrs.addressLine1) {
-                            const addressLine = this.document.createElement('addr-line');
+                            const addressLine = this.createElement('addr-line');
                             addressLine.textContent = affiliation.attrs.addressLine1;
                             aff.appendChild(addressLine);
                         }
                         if (affiliation.attrs.addressLine2) {
-                            const addressLine = this.document.createElement('addr-line');
+                            const addressLine = this.createElement('addr-line');
                             addressLine.textContent = affiliation.attrs.addressLine2;
                             aff.appendChild(addressLine);
                         }
                         if (affiliation.attrs.addressLine3) {
-                            const addressLine = this.document.createElement('addr-line');
+                            const addressLine = this.createElement('addr-line');
                             addressLine.textContent = affiliation.attrs.addressLine3;
                             aff.appendChild(addressLine);
                         }
                         if (affiliation.attrs.city) {
-                            const city = this.document.createElement('city');
+                            const city = this.createElement('city');
                             city.textContent = affiliation.attrs.city;
                             aff.appendChild(city);
                         }
                         if (affiliation.attrs.country) {
-                            const country = this.document.createElement('country');
+                            const country = this.createElement('country');
                             country.textContent = affiliation.attrs.country;
                             aff.appendChild(country);
                         }
                         if (affiliation.attrs.email) {
-                            const email = this.document.createElement('email');
+                            const email = this.createElement('email');
                             email.setAttributeNS(XLINK_NAMESPACE, 'href', (_a = affiliation.attrs.email.href) !== null && _a !== void 0 ? _a : '');
                             email.textContent = (_b = affiliation.attrs.email.text) !== null && _b !== void 0 ? _b : '';
                             aff.appendChild(email);
                         }
                         const labelNumber = affiliationLabels.get(affiliation.attrs.id);
                         if (labelNumber) {
-                            const label = this.document.createElement('label');
+                            const label = this.createElement('label');
                             label.textContent = String(labelNumber);
                             aff.appendChild(label);
                         }
@@ -1256,7 +1242,7 @@ class JATSExporter {
             }
         };
         this.createAuthorNotesElement = () => {
-            const authorNotesEl = this.document.createElement('author-notes');
+            const authorNotesEl = this.createElement('author-notes');
             const authorNotesNode = this.getFirstChildOfType(schema_1.schema.nodes.author_notes);
             if (authorNotesNode) {
                 this.appendModelsToAuthorNotes(authorNotesEl, authorNotesNode);
@@ -1264,10 +1250,10 @@ class JATSExporter {
             return authorNotesEl;
         };
         this.appendCorrespondingToElement = (corresponding, element) => {
-            const correspondingEl = this.document.createElement('corresp');
+            const correspondingEl = this.createElement('corresp');
             correspondingEl.setAttribute('id', normalizeID(corresponding.attrs.id));
             if (corresponding.attrs.label) {
-                const labelEl = this.document.createElement('label');
+                const labelEl = this.createElement('label');
                 labelEl.textContent = corresponding.attrs.label;
                 correspondingEl.appendChild(labelEl);
             }
@@ -1278,17 +1264,17 @@ class JATSExporter {
             const parsedDoc = new DOMParser().parseFromString(paragraph.textContent, 'text/html');
             const parsedParagraph = parsedDoc.body.querySelector('p');
             if (parsedParagraph) {
-                const paragraphEl = this.document.createElement('p');
+                const paragraphEl = this.createElement('p');
                 paragraphEl.innerHTML = parsedParagraph.innerHTML;
                 paragraphEl.setAttribute('id', normalizeID(paragraph.attrs.id));
                 element.appendChild(paragraphEl);
             }
         };
         this.appendFootnoteToElement = (footnote, element) => {
-            const footnoteEl = this.document.createElement('fn');
+            const footnoteEl = this.createElement('fn');
             footnoteEl.setAttribute('id', normalizeID(footnote.attrs.id));
             if (!footnote.textContent.includes('<p>')) {
-                const p = this.document.createElement('p');
+                const p = this.createElement('p');
                 p.innerHTML = footnote.textContent;
                 footnoteEl.appendChild(p);
             }
@@ -1331,7 +1317,7 @@ class JATSExporter {
             });
         };
         this.changeTag = (node, tag) => {
-            const clone = this.document.createElement(tag);
+            const clone = this.createElement(tag);
             for (const attr of node.attributes) {
                 clone.setAttributeNS(null, attr.name, attr.value);
             }
@@ -1352,8 +1338,8 @@ class JATSExporter {
                 return;
             }
             const tbodyRows = Array.from(tbody.childNodes);
-            const thead = this.document.createElement('thead');
-            const tfoot = this.document.createElement('tfoot');
+            const thead = this.createElement('thead');
+            const tfoot = this.createElement('tfoot');
             tbodyRows.forEach((row, i) => {
                 const isRow = row instanceof Element && row.tagName.toLowerCase() === 'tr';
                 if (isRow) {
@@ -1406,7 +1392,7 @@ class JATSExporter {
             if (!awardGroups.length) {
                 return;
             }
-            const fundingGroup = this.document.createElement('funding-group');
+            const fundingGroup = this.createElement('funding-group');
             awardGroups.forEach((award) => {
                 fundingGroup.appendChild(award);
             });
@@ -1441,7 +1427,7 @@ class JATSExporter {
             }
             const section = body.querySelector('sec[sec-type="acknowledgements"]');
             if (section) {
-                const ack = this.document.createElement('ack');
+                const ack = this.createElement('ack');
                 while (section.firstChild) {
                     ack.appendChild(section.firstChild);
                 }
@@ -1452,12 +1438,12 @@ class JATSExporter {
             }
             const appendicesSections = body.querySelectorAll('sec[sec-type="appendices"]');
             if (appendicesSections) {
-                const appGroup = this.document.createElement('app-group');
+                const appGroup = this.createElement('app-group');
                 appendicesSections.forEach((section) => {
                     if (section.parentNode) {
                         section.parentNode.removeChild(section);
                     }
-                    const app = this.document.createElement('app');
+                    const app = this.createElement('app');
                     app.appendChild(section);
                     appGroup.appendChild(app);
                 });
@@ -1486,17 +1472,17 @@ class JATSExporter {
                 }
             }
             if (footNotes.length > 0) {
-                const fnGroup = this.document.createElement('fn-group');
+                const fnGroup = this.createElement('fn-group');
                 fnGroup.append(...footNotes);
                 back.append(fnGroup);
             }
         };
         this.sectionToFootnote = (section, fnType) => {
-            const footNote = this.document.createElement('fn');
+            const footNote = this.createElement('fn');
             footNote.setAttribute('fn-type', fnType);
             const title = section.querySelector('title');
             if (title) {
-                const footNoteTitle = this.document.createElement('p');
+                const footNoteTitle = this.createElement('p');
                 footNoteTitle.setAttribute('content-type', 'fn-title');
                 footNoteTitle.textContent = title.textContent;
                 section.removeChild(title);
@@ -1509,7 +1495,7 @@ class JATSExporter {
             return footNote;
         };
         this.moveFloatsGroup = (body, article) => {
-            const floatsGroup = this.document.createElement('floats-group');
+            const floatsGroup = this.createElement('floats-group');
             const section = body.querySelector('sec[sec-type="floating-element"]');
             if (section) {
                 floatsGroup.append(...section.children);
@@ -1520,14 +1506,14 @@ class JATSExporter {
             }
         };
         this.buildContributorName = (contributor) => {
-            const name = this.document.createElement('name');
+            const name = this.createElement('name');
             if (contributor.attrs.bibliographicName.family) {
-                const surname = this.document.createElement('surname');
+                const surname = this.createElement('surname');
                 surname.textContent = contributor.attrs.bibliographicName.family;
                 name.appendChild(surname);
             }
             if (contributor.attrs.bibliographicName.given) {
-                const givenNames = this.document.createElement('given-names');
+                const givenNames = this.createElement('given-names');
                 givenNames.textContent = contributor.attrs.bibliographicName.given;
                 name.appendChild(givenNames);
             }
@@ -1566,7 +1552,7 @@ class JATSExporter {
     }
     createEquation(node, isInline = false) {
         if (node.attrs.format === 'tex') {
-            const texMath = this.document.createElement('tex-math');
+            const texMath = this.createElement('tex-math');
             texMath.setAttribute('notation', 'LaTeX');
             texMath.setAttribute('version', 'MathJax');
             if (node.attrs.contents.includes('<![CDATA[')) {
@@ -1618,13 +1604,13 @@ class JATSExporter {
     buildKeywords(articleMeta) {
         const keywordGroups = this.getChildrenOfType(schema_1.schema.nodes.keyword_group);
         keywordGroups.forEach((group) => {
-            const kwdGroup = this.document.createElement('kwd-group');
+            const kwdGroup = this.createElement('kwd-group');
             if (group.attrs.type) {
                 kwdGroup.setAttribute('kwd-group-type', group.attrs.type);
             }
             articleMeta.appendChild(kwdGroup);
             group.content.forEach((keyword) => {
-                const kwd = this.document.createElement('kwd');
+                const kwd = this.createElement('kwd');
                 kwd.textContent = keyword.textContent;
                 kwdGroup.appendChild(kwd);
             });
@@ -1663,7 +1649,7 @@ class JATSExporter {
         }
     }
     createAbstractNode(abstractSection) {
-        const abstractNode = this.document.createElement('abstract');
+        const abstractNode = this.createElement('abstract');
         for (const node of abstractSection.childNodes) {
             if (node.nodeName !== 'title') {
                 abstractNode.appendChild(node.cloneNode(true));
@@ -1685,7 +1671,7 @@ class JATSExporter {
             if (fnGroup) {
                 const coiStatement = fnGroup.querySelector('fn[fn-type="coi-statement"]');
                 if (coiStatement) {
-                    const authorNotes = this.document.createElement('author-notes');
+                    const authorNotes = this.createElement('author-notes');
                     authorNotes.append(coiStatement);
                     const articleMeta = front.querySelector('article-meta');
                     if (articleMeta) {
@@ -1731,7 +1717,7 @@ class JATSExporter {
     }
     fillEmptyElements(articleElement, selector, tagName = 'p') {
         const emptyElements = Array.from(articleElement.querySelectorAll(selector)).filter((element) => !element.innerHTML);
-        emptyElements.forEach((element) => element.appendChild(this.document.createElement(tagName)));
+        emptyElements.forEach((element) => element.appendChild(this.createElement(tagName)));
     }
     fillEmptyFootnotes(articleElement) {
         this.fillEmptyElements(articleElement, 'fn');