@manuscripts/transform 3.0.50-LEAN-4405.0 → 3.0.50

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (15) hide show
  1. package/dist/cjs/jats/exporter/jats-exporter.js +52 -145
  2. package/dist/cjs/jats/importer/jats-dom-parser.js +53 -124
  3. package/dist/cjs/schema/nodes/bibliography_item.js +1 -17
  4. package/dist/cjs/version.js +1 -1
  5. package/dist/es/jats/exporter/jats-exporter.js +52 -145
  6. package/dist/es/jats/importer/jats-dom-parser.js +53 -124
  7. package/dist/es/schema/nodes/bibliography_item.js +1 -17
  8. package/dist/es/version.js +1 -1
  9. package/dist/types/jats/importer/jats-dom-parser.d.ts +1 -0
  10. package/dist/types/schema/nodes/bibliography_item.d.ts +1 -22
  11. package/dist/types/version.d.ts +1 -1
  12. package/package.json +2 -2
  13. package/dist/cjs/schema/migration/migration-scripts/3.0.47.js +0 -19
  14. package/dist/es/schema/migration/migration-scripts/3.0.47.js +0 -17
  15. package/dist/types/schema/migration/migration-scripts/3.0.47.d.ts +0 -8
package/dist/cjs/jats/exporter/jats-exporter.js CHANGED
@@ -109,7 +109,22 @@ class JATSExporter {
109
109
  if (!node) {
110
110
  return undefined;
111
111
  }
112
- return Object.assign(Object.assign({}, node.attrs), { _id: node.attrs.id, DOI: node.attrs.doi, manuscriptID, objectType: json_schema_1.ObjectTypes.BibliographyItem, 'container-title': node.attrs.containerTitle });
112
+ return {
113
+ _id: node.attrs.id,
114
+ issued: node.attrs.issued,
115
+ DOI: node.attrs.doi,
116
+ manuscriptID,
117
+ objectType: json_schema_1.ObjectTypes.BibliographyItem,
118
+ author: node.attrs.author,
119
+ 'container-title': node.attrs.containerTitle,
120
+ volume: node.attrs.volume,
121
+ issue: node.attrs.issue,
122
+ supplement: node.attrs.supplement,
123
+ page: node.attrs.page,
124
+ title: node.attrs.title,
125
+ literal: node.attrs.literal,
126
+ type: node.attrs.type,
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+ };
113
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  };
114
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  };
115
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  this.serializeToJATS = async (manuscriptNode, options) => {
@@ -411,15 +426,19 @@ class JATSExporter {
411
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  const ref = this.document.createElement('ref');
412
427
  ref.setAttribute('id', normalizeID(id));
413
428
  const updateCitationPubType = (citationEl, pubType) => {
414
- switch (pubType) {
415
- case 'article':
416
- case 'article-journal':
417
- case undefined:
418
- citationEl.setAttribute('publication-type', 'journal');
419
- break;
420
- default:
421
- citationEl.setAttribute('publication-type', pubType);
422
- break;
429
+ if (pubType) {
430
+ switch (pubType) {
431
+ case 'article':
432
+ case 'article-journal':
433
+ citationEl.setAttribute('publication-type', 'journal');
434
+ break;
435
+ default:
436
+ citationEl.setAttribute('publication-type', pubType);
437
+ break;
438
+ }
439
+ }
440
+ else {
441
+ citationEl.setAttribute('publication-type', 'journal');
423
442
  }
424
443
  };
425
444
  if (bibliographyItem.attrs.literal) {
@@ -432,52 +451,31 @@ class JATSExporter {
432
451
  else {
433
452
  const citation = this.document.createElement('element-citation');
434
453
  updateCitationPubType(citation, bibliographyItem.attrs.type);
435
- const appendPersonGroup = (type, people) => {
454
+ if (bibliographyItem.attrs.author) {
436
455
  const personGroupNode = this.document.createElement('person-group');
437
- personGroupNode.setAttribute('person-group-type', type);
456
+ personGroupNode.setAttribute('person-group-type', 'author');
438
457
  citation.appendChild(personGroupNode);
439
- people.forEach((person) => {
458
+ bibliographyItem.attrs.author.forEach((author) => {
440
459
  const name = this.document.createElement('string-name');
441
- if (person.family) {
442
- const surname = this.document.createElement('surname');
443
- surname.textContent = person.family;
444
- name.appendChild(surname);
460
+ if (author.family) {
461
+ const node = this.document.createElement('surname');
462
+ node.textContent = author.family;
463
+ name.appendChild(node);
445
464
  }
446
- if (person.given) {
447
- const givenNames = this.document.createElement('given-names');
448
- givenNames.textContent = person.given;
449
- name.appendChild(givenNames);
465
+ if (author.given) {
466
+ const node = this.document.createElement('given-names');
467
+ node.textContent = author.given;
468
+ name.appendChild(node);
450
469
  }
451
470
  if (name.hasChildNodes()) {
452
471
  personGroupNode.appendChild(name);
453
472
  }
454
- if (person.literal) {
473
+ if (author.literal) {
455
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  const collab = this.document.createElement('collab');
456
- collab.textContent = person.literal;
475
+ collab.textContent = author.literal;
457
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  personGroupNode.appendChild(collab);
458
477
  }
459
478
  });
460
- };
461
- if (bibliographyItem.attrs.author) {
462
- appendPersonGroup('author', bibliographyItem.attrs.author);
463
- }
464
- if (bibliographyItem.attrs.editor) {
465
- appendPersonGroup('editor', bibliographyItem.attrs.editor);
466
- }
467
- if (bibliographyItem.attrs.title) {
468
- const node = this.document.createElement('article-title');
469
- this.setTitleContent(node, bibliographyItem.attrs.title);
470
- citation.appendChild(node);
471
- }
472
- if (bibliographyItem.attrs.containerTitle) {
473
- const node = this.document.createElement('source');
474
- this.setTitleContent(node, bibliographyItem.attrs.containerTitle);
475
- citation.appendChild(node);
476
- }
477
- if (bibliographyItem.attrs['data-title']) {
478
- const node = this.document.createElement('data-title');
479
- this.setTitleContent(node, bibliographyItem.attrs['data-title']);
480
- citation.appendChild(node);
481
479
  }
482
480
  if (bibliographyItem.attrs.issued) {
483
481
  const dateParts = bibliographyItem.attrs.issued['date-parts'];
@@ -500,6 +498,16 @@ class JATSExporter {
500
498
  }
501
499
  }
502
500
  }
501
+ if (bibliographyItem.attrs.title) {
502
+ const node = this.document.createElement('article-title');
503
+ this.setTitleContent(node, bibliographyItem.attrs.title);
504
+ citation.appendChild(node);
505
+ }
506
+ if (bibliographyItem.attrs.containerTitle) {
507
+ const node = this.document.createElement('source');
508
+ this.setTitleContent(node, bibliographyItem.attrs.containerTitle);
509
+ citation.appendChild(node);
510
+ }
503
511
  if (bibliographyItem.attrs.volume) {
504
512
  const node = this.document.createElement('volume');
505
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  node.textContent = String(bibliographyItem.attrs.volume);
@@ -543,107 +551,6 @@ class JATSExporter {
543
551
  node.textContent = String(bibliographyItem.attrs.doi);
544
552
  citation.appendChild(node);
545
553
  }
546
- if (bibliographyItem.attrs.pubIDs) {
547
- for (const pubID of bibliographyItem.attrs.pubIDs) {
548
- const node = this.document.createElement('pub-id');
549
- node.setAttribute('pub-id-type', pubID.type);
550
- node.textContent = pubID.content;
551
- citation.appendChild(node);
552
- }
553
- }
554
- if (bibliographyItem.attrs.std) {
555
- const node = this.document.createElement('std');
556
- node.textContent = String(bibliographyItem.attrs.std);
557
- citation.appendChild(node);
558
- }
559
- if (bibliographyItem.attrs.series) {
560
- const node = this.document.createElement('series');
561
- node.textContent = String(bibliographyItem.attrs.series);
562
- citation.appendChild(node);
563
- }
564
- if (bibliographyItem.attrs.edition) {
565
- const node = this.document.createElement('edition');
566
- node.textContent = String(bibliographyItem.attrs.edition);
567
- citation.appendChild(node);
568
- }
569
- if (bibliographyItem.attrs['publisher-place']) {
570
- const node = this.document.createElement('publisher-loc');
571
- node.textContent = String(bibliographyItem.attrs['publisher-place']);
572
- citation.appendChild(node);
573
- }
574
- if (bibliographyItem.attrs.publisher) {
575
- const node = this.document.createElement('publisher-name');
576
- node.textContent = String(bibliographyItem.attrs.publisher);
577
- citation.appendChild(node);
578
- }
579
- if (bibliographyItem.attrs.event) {
580
- const node = this.document.createElement('conf-name');
581
- node.textContent = String(bibliographyItem.attrs.event);
582
- citation.appendChild(node);
583
- }
584
- if (bibliographyItem.attrs['event-place']) {
585
- const node = this.document.createElement('conf-loc');
586
- node.textContent = String(bibliographyItem.attrs['event-place']);
587
- citation.appendChild(node);
588
- }
589
- const buildISODate = (date) => {
590
- const dateParts = date['date-parts'];
591
- if (dateParts && dateParts.length) {
592
- const [[year, month, day]] = dateParts;
593
- if (year && month && day) {
594
- return new Date(Date.UTC(Number(year), Number(month) - 1, Number(day)));
595
- }
596
- }
597
- };
598
- const eventDate = bibliographyItem.attrs['event-date'];
599
- if (eventDate) {
600
- const isoDate = buildISODate(eventDate);
601
- if (isoDate) {
602
- const node = this.document.createElement('conf-date');
603
- node.setAttribute('iso-8601-date', isoDate.toISOString());
604
- node.textContent = isoDate.toDateString();
605
- citation.appendChild(node);
606
- }
607
- }
608
- if (bibliographyItem.attrs['number-of-pages']) {
609
- const node = this.document.createElement('size');
610
- node.textContent = String(bibliographyItem.attrs['number-of-pages']);
611
- node.setAttribute('units', 'pages');
612
- citation.appendChild(node);
613
- }
614
- if (bibliographyItem.attrs.volume) {
615
- const node = this.document.createElement('volume');
616
- node.textContent = String(bibliographyItem.attrs.volume);
617
- citation.appendChild(node);
618
- }
619
- const dateInCitation = bibliographyItem.attrs['date-in-citation'];
620
- if (dateInCitation) {
621
- const isoDate = buildISODate(dateInCitation);
622
- if (isoDate) {
623
- const node = this.document.createElement('date-in-citation');
624
- node.setAttribute('iso-8601-date', isoDate.toISOString());
625
- node.textContent = isoDate.toDateString();
626
- citation.appendChild(node);
627
- }
628
- }
629
- if (bibliographyItem.attrs.institution) {
630
- const node = this.document.createElement('institution');
631
- node.textContent = String(bibliographyItem.attrs.institution);
632
- citation.appendChild(node);
633
- }
634
- if (bibliographyItem.attrs.elocationID) {
635
- const node = this.document.createElement('elocation-id');
636
- node.textContent = String(bibliographyItem.attrs.elocationID);
637
- citation.appendChild(node);
638
- }
639
- if (bibliographyItem.attrs.links) {
640
- for (const link of bibliographyItem.attrs.links) {
641
- const node = this.document.createElement('ext-link');
642
- node.setAttribute('ext-link-type', link.type);
643
- node.textContent = link.content;
644
- citation.appendChild(node);
645
- }
646
- }
647
554
  ref.appendChild(citation);
648
555
  refList.appendChild(ref);
649
556
  }
package/dist/cjs/jats/importer/jats-dom-parser.js CHANGED
@@ -134,161 +134,90 @@ class JATSDOMParser {
134
134
  this.getHTMLContent = (node, querySelector) => {
135
135
  return (0, jats_parser_utils_1.htmlFromJatsNode)(node.querySelector(querySelector));
136
136
  };
137
+ this.chooseBibliographyItemType = (publicationType) => {
138
+ switch (publicationType) {
139
+ case 'book':
140
+ case 'thesis':
141
+ return publicationType;
142
+ case 'journal':
143
+ default:
144
+ return 'article-journal';
145
+ }
146
+ };
137
147
  this.parseRef = (element) => {
138
- var _a;
139
- const mixedCitation = element.querySelector('mixed-citation');
140
- const elementCitation = element.querySelector('element-citation');
148
+ const publicationType = element.getAttribute('publication-type');
149
+ const authorNodes = [
150
+ ...element.querySelectorAll('person-group[person-group-type="author"] > *'),
151
+ ];
141
152
  const id = element.id;
142
- const publicationType = (_a = elementCitation === null || elementCitation === void 0 ? void 0 : elementCitation.getAttribute('publication-type')) !== null && _a !== void 0 ? _a : mixedCitation === null || mixedCitation === void 0 ? void 0 : mixedCitation.getAttribute('publication-type');
143
153
  const attrs = {
144
154
  id,
145
- type: publicationType === 'journal'
146
- ? 'article-journal'
147
- : publicationType !== null && publicationType !== void 0 ? publicationType : 'article-journal',
155
+ type: this.chooseBibliographyItemType(publicationType),
148
156
  };
149
157
  const title = this.getHTMLContent(element, 'article-title');
150
158
  if (title) {
151
159
  attrs.title = title;
152
160
  }
153
- const containerTitle = this.getHTMLContent(element, 'source');
154
- if (this.getHTMLContent(element, 'source')) {
155
- attrs.containerTitle = containerTitle;
156
- }
157
- const dataTitle = this.getHTMLContent(element, 'data-title');
158
- if (dataTitle) {
159
- attrs['data-title'] = dataTitle;
160
- }
161
- const authorNodes = [
162
- ...element.querySelectorAll('person-group[person-group-type="author"] > *'),
163
- ];
164
- const editorNodes = [
165
- ...element.querySelectorAll('person-group[person-group-type="editor"] > *'),
166
- ];
167
- if (authorNodes.length === 0) {
161
+ const mixedCitation = element.querySelector('mixed-citation');
162
+ if (authorNodes.length <= 0) {
168
163
  mixedCitation === null || mixedCitation === void 0 ? void 0 : mixedCitation.childNodes.forEach((item) => {
169
164
  var _a, _b;
170
165
  if (item.nodeType === Node.TEXT_NODE &&
171
166
  ((_a = item.textContent) === null || _a === void 0 ? void 0 : _a.match(/[A-Za-z]+/g))) {
172
167
  attrs.literal = (_b = (0, utils_1.getTrimmedTextContent)(mixedCitation)) !== null && _b !== void 0 ? _b : '';
168
+ return attrs;
173
169
  }
174
170
  });
175
171
  }
176
- const buildDate = (element) => {
177
- var _a, _b, _c;
178
- const isoDate = element.getAttribute('iso-8601-date');
179
- const isoDateParts = isoDate === null || isoDate === void 0 ? void 0 : isoDate.split('-');
180
- return (0, json_schema_1.buildBibliographicDate)({
181
- 'date-parts': [
182
- [
183
- (_a = isoDateParts === null || isoDateParts === void 0 ? void 0 : isoDateParts[0]) !== null && _a !== void 0 ? _a : '',
184
- (_b = isoDateParts === null || isoDateParts === void 0 ? void 0 : isoDateParts[1]) !== null && _b !== void 0 ? _b : '',
185
- (_c = isoDateParts === null || isoDateParts === void 0 ? void 0 : isoDateParts[2]) !== null && _c !== void 0 ? _c : '',
186
- ],
187
- ],
188
- });
189
- };
190
- const buildName = (node) => {
191
- const name = (0, json_schema_1.buildBibliographicName)({});
192
- const given = (0, utils_1.getTrimmedTextContent)(node, 'given-names');
193
- const family = (0, utils_1.getTrimmedTextContent)(node, 'surname');
194
- if (given) {
195
- name.given = given;
196
- }
197
- if (family) {
198
- name.family = family;
199
- }
200
- if (node.nodeName === 'collab') {
201
- name.literal = (0, utils_1.getTrimmedTextContent)(node);
202
- }
203
- return name;
204
- };
205
- if (authorNodes.length) {
206
- attrs.author = authorNodes.map(buildName);
207
- }
208
- if (editorNodes.length) {
209
- attrs.editor = editorNodes.map(buildName);
210
- }
211
- const getText = (selector) => (0, utils_1.getTrimmedTextContent)(element, selector);
212
- if (getText('volume')) {
213
- attrs.volume = getText('volume');
214
- }
215
- if (getText('issue')) {
216
- attrs.issue = getText('issue');
217
- }
218
- if (getText('supplement')) {
219
- attrs.supplement = getText('supplement');
220
- }
221
- if (getText('pub-id[pub-id-type="doi"]')) {
222
- attrs.doi = getText('pub-id[pub-id-type="doi"]');
223
- }
224
- if (getText('std')) {
225
- attrs.std = getText('std');
226
- }
227
- if (getText('series')) {
228
- attrs.series = getText('series');
229
- }
230
- if (getText('edition')) {
231
- attrs.edition = getText('edition');
232
- }
233
- if (getText('publisher-name')) {
234
- attrs.publisher = getText('publisher-name');
172
+ const source = this.getHTMLContent(element, 'source');
173
+ if (source) {
174
+ attrs.containerTitle = source;
235
175
  }
236
- if (getText('publisher-loc')) {
237
- attrs['publisher-place'] = getText('publisher-loc');
176
+ const volume = (0, utils_1.getTrimmedTextContent)(element, 'volume');
177
+ if (volume) {
178
+ attrs.volume = volume;
238
179
  }
239
- if (getText('conf-name')) {
240
- attrs['event'] = getText('conf-name');
180
+ const issue = (0, utils_1.getTrimmedTextContent)(element, 'issue');
181
+ if (issue) {
182
+ attrs.issue = issue;
241
183
  }
242
- if (getText('conf-loc')) {
243
- attrs['event-place'] = getText('conf-loc');
184
+ const supplement = (0, utils_1.getTrimmedTextContent)(element, 'supplement');
185
+ if (supplement) {
186
+ attrs.supplement = supplement;
244
187
  }
245
- if (getText('size[units="pages"]')) {
246
- attrs['number-of-pages'] = getText('size[units="pages"]');
247
- }
248
- if (getText('institution')) {
249
- attrs.institution = getText('institution');
250
- }
251
- if (getText('elocation-id')) {
252
- attrs.elocationID = getText('elocation-id');
253
- }
254
- const fpage = getText('fpage');
255
- const lpage = getText('lpage');
188
+ const fpage = (0, utils_1.getTrimmedTextContent)(element, 'fpage');
189
+ const lpage = (0, utils_1.getTrimmedTextContent)(element, 'lpage');
256
190
  if (fpage) {
257
191
  attrs.page = lpage ? `${fpage}-${lpage}` : fpage;
258
192
  }
259
- const year = getText('year');
193
+ const year = (0, utils_1.getTrimmedTextContent)(element, 'year');
260
194
  if (year) {
261
195
  attrs.issued = (0, json_schema_1.buildBibliographicDate)({
262
- 'date-parts': [[year, getText('month') || '', getText('day') || '']],
196
+ 'date-parts': [[year]],
263
197
  });
264
198
  }
265
- const pubIDs = Array.from(element.querySelectorAll('pub-id:not([pub-id-type="doi"])')).map((node) => ({
266
- content: (0, utils_1.getTrimmedTextContent)(node),
267
- type: node.getAttribute('pub-id-type') || '',
268
- }));
269
- if (pubIDs.length) {
270
- attrs.pubIDs = pubIDs;
199
+ const doi = (0, utils_1.getTrimmedTextContent)(element, 'pub-id[pub-id-type="doi"]');
200
+ if (doi) {
201
+ attrs.doi = doi;
271
202
  }
272
- const links = Array.from(element.querySelectorAll('ext-link')).map((node) => ({
273
- content: (0, utils_1.getTrimmedTextContent)(node),
274
- type: node.getAttribute('ext-link-type') || '',
275
- }));
276
- if (links.length) {
277
- attrs.links = links;
278
- }
279
- const dateInCitation = element.querySelector('date-in-citation');
280
- if (dateInCitation) {
281
- const date = buildDate(dateInCitation);
282
- if (date) {
283
- attrs['date-in-citation'] = date;
203
+ const authors = [];
204
+ authorNodes.forEach((authorNode) => {
205
+ const name = (0, json_schema_1.buildBibliographicName)({});
206
+ const given = (0, utils_1.getTrimmedTextContent)(authorNode, 'given-names');
207
+ if (given) {
208
+ name.given = given;
284
209
  }
285
- }
286
- const eventDate = element.querySelector('conf-date');
287
- if (eventDate) {
288
- const date = buildDate(eventDate);
289
- if (date) {
290
- attrs['event-date'] = date;
210
+ const family = (0, utils_1.getTrimmedTextContent)(authorNode, 'surname');
211
+ if (family) {
212
+ name.family = family;
213
+ }
214
+ if (authorNode.nodeName === 'collab') {
215
+ name.literal = (0, utils_1.getTrimmedTextContent)(authorNode);
291
216
  }
217
+ authors.push(name);
218
+ });
219
+ if (authors.length) {
220
+ attrs.author = authors;
292
221
  }
293
222
  return attrs;
294
223
  };
package/dist/cjs/schema/nodes/bibliography_item.js CHANGED
@@ -22,31 +22,15 @@ exports.bibliographyItem = {
22
22
  id: { default: '' },
23
23
  type: { default: undefined },
24
24
  author: { default: undefined },
25
- doi: { default: undefined },
26
25
  issued: { default: undefined },
27
26
  containerTitle: { default: undefined },
27
+ doi: { default: undefined },
28
28
  volume: { default: undefined },
29
29
  issue: { default: undefined },
30
30
  supplement: { default: undefined },
31
31
  page: { default: undefined },
32
32
  title: { default: undefined },
33
33
  literal: { default: undefined },
34
- 'data-title': { default: undefined },
35
- std: { default: undefined },
36
- series: { default: undefined },
37
- edition: { default: undefined },
38
- publisher: { default: undefined },
39
- 'publisher-place': { default: undefined },
40
- event: { default: undefined },
41
- 'event-place': { default: undefined },
42
- 'event-date': { default: undefined },
43
- institution: { default: undefined },
44
- editor: { default: undefined },
45
- elocationID: { default: undefined },
46
- links: { default: undefined },
47
- 'number-of-pages': { default: undefined },
48
- pubIDs: { default: undefined },
49
- 'date-in-citation': { default: undefined },
50
34
  dataTracked: { default: null },
51
35
  },
52
36
  selectable: false,
package/dist/cjs/version.js CHANGED
@@ -1,4 +1,4 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.VERSION = void 0;
4
- exports.VERSION = "3.0.50-LEAN-4405.0";
4
+ exports.VERSION = "3.0.50";
package/dist/es/jats/exporter/jats-exporter.js CHANGED
@@ -101,7 +101,22 @@ export class JATSExporter {
101
101
  if (!node) {
102
102
  return undefined;
103
103
  }
104
- return Object.assign(Object.assign({}, node.attrs), { _id: node.attrs.id, DOI: node.attrs.doi, manuscriptID, objectType: ObjectTypes.BibliographyItem, 'container-title': node.attrs.containerTitle });
104
+ return {
105
+ _id: node.attrs.id,
106
+ issued: node.attrs.issued,
107
+ DOI: node.attrs.doi,
108
+ manuscriptID,
109
+ objectType: ObjectTypes.BibliographyItem,
110
+ author: node.attrs.author,
111
+ 'container-title': node.attrs.containerTitle,
112
+ volume: node.attrs.volume,
113
+ issue: node.attrs.issue,
114
+ supplement: node.attrs.supplement,
115
+ page: node.attrs.page,
116
+ title: node.attrs.title,
117
+ literal: node.attrs.literal,
118
+ type: node.attrs.type,
119
+ };
105
120
  };
106
121
  };
107
122
  this.serializeToJATS = async (manuscriptNode, options) => {
@@ -403,15 +418,19 @@ export class JATSExporter {
403
418
  const ref = this.document.createElement('ref');
404
419
  ref.setAttribute('id', normalizeID(id));
405
420
  const updateCitationPubType = (citationEl, pubType) => {
406
- switch (pubType) {
407
- case 'article':
408
- case 'article-journal':
409
- case undefined:
410
- citationEl.setAttribute('publication-type', 'journal');
411
- break;
412
- default:
413
- citationEl.setAttribute('publication-type', pubType);
414
- break;
421
+ if (pubType) {
422
+ switch (pubType) {
423
+ case 'article':
424
+ case 'article-journal':
425
+ citationEl.setAttribute('publication-type', 'journal');
426
+ break;
427
+ default:
428
+ citationEl.setAttribute('publication-type', pubType);
429
+ break;
430
+ }
431
+ }
432
+ else {
433
+ citationEl.setAttribute('publication-type', 'journal');
415
434
  }
416
435
  };
417
436
  if (bibliographyItem.attrs.literal) {
@@ -424,52 +443,31 @@ export class JATSExporter {
424
443
  else {
425
444
  const citation = this.document.createElement('element-citation');
426
445
  updateCitationPubType(citation, bibliographyItem.attrs.type);
427
- const appendPersonGroup = (type, people) => {
446
+ if (bibliographyItem.attrs.author) {
428
447
  const personGroupNode = this.document.createElement('person-group');
429
- personGroupNode.setAttribute('person-group-type', type);
448
+ personGroupNode.setAttribute('person-group-type', 'author');
430
449
  citation.appendChild(personGroupNode);
431
- people.forEach((person) => {
450
+ bibliographyItem.attrs.author.forEach((author) => {
432
451
  const name = this.document.createElement('string-name');
433
- if (person.family) {
434
- const surname = this.document.createElement('surname');
435
- surname.textContent = person.family;
436
- name.appendChild(surname);
452
+ if (author.family) {
453
+ const node = this.document.createElement('surname');
454
+ node.textContent = author.family;
455
+ name.appendChild(node);
437
456
  }
438
- if (person.given) {
439
- const givenNames = this.document.createElement('given-names');
440
- givenNames.textContent = person.given;
441
- name.appendChild(givenNames);
457
+ if (author.given) {
458
+ const node = this.document.createElement('given-names');
459
+ node.textContent = author.given;
460
+ name.appendChild(node);
442
461
  }
443
462
  if (name.hasChildNodes()) {
444
463
  personGroupNode.appendChild(name);
445
464
  }
446
- if (person.literal) {
465
+ if (author.literal) {
447
466
  const collab = this.document.createElement('collab');
448
- collab.textContent = person.literal;
467
+ collab.textContent = author.literal;
449
468
  personGroupNode.appendChild(collab);
450
469
  }
451
470
  });
452
- };
453
- if (bibliographyItem.attrs.author) {
454
- appendPersonGroup('author', bibliographyItem.attrs.author);
455
- }
456
- if (bibliographyItem.attrs.editor) {
457
- appendPersonGroup('editor', bibliographyItem.attrs.editor);
458
- }
459
- if (bibliographyItem.attrs.title) {
460
- const node = this.document.createElement('article-title');
461
- this.setTitleContent(node, bibliographyItem.attrs.title);
462
- citation.appendChild(node);
463
- }
464
- if (bibliographyItem.attrs.containerTitle) {
465
- const node = this.document.createElement('source');
466
- this.setTitleContent(node, bibliographyItem.attrs.containerTitle);
467
- citation.appendChild(node);
468
- }
469
- if (bibliographyItem.attrs['data-title']) {
470
- const node = this.document.createElement('data-title');
471
- this.setTitleContent(node, bibliographyItem.attrs['data-title']);
472
- citation.appendChild(node);
473
471
  }
474
472
  if (bibliographyItem.attrs.issued) {
475
473
  const dateParts = bibliographyItem.attrs.issued['date-parts'];
@@ -492,6 +490,16 @@ export class JATSExporter {
492
490
  }
493
491
  }
494
492
  }
493
+ if (bibliographyItem.attrs.title) {
494
+ const node = this.document.createElement('article-title');
495
+ this.setTitleContent(node, bibliographyItem.attrs.title);
496
+ citation.appendChild(node);
497
+ }
498
+ if (bibliographyItem.attrs.containerTitle) {
499
+ const node = this.document.createElement('source');
500
+ this.setTitleContent(node, bibliographyItem.attrs.containerTitle);
501
+ citation.appendChild(node);
502
+ }
495
503
  if (bibliographyItem.attrs.volume) {
496
504
  const node = this.document.createElement('volume');
497
505
  node.textContent = String(bibliographyItem.attrs.volume);
@@ -535,107 +543,6 @@ export class JATSExporter {
535
543
  node.textContent = String(bibliographyItem.attrs.doi);
536
544
  citation.appendChild(node);
537
545
  }
538
- if (bibliographyItem.attrs.pubIDs) {
539
- for (const pubID of bibliographyItem.attrs.pubIDs) {
540
- const node = this.document.createElement('pub-id');
541
- node.setAttribute('pub-id-type', pubID.type);
542
- node.textContent = pubID.content;
543
- citation.appendChild(node);
544
- }
545
- }
546
- if (bibliographyItem.attrs.std) {
547
- const node = this.document.createElement('std');
548
- node.textContent = String(bibliographyItem.attrs.std);
549
- citation.appendChild(node);
550
- }
551
- if (bibliographyItem.attrs.series) {
552
- const node = this.document.createElement('series');
553
- node.textContent = String(bibliographyItem.attrs.series);
554
- citation.appendChild(node);
555
- }
556
- if (bibliographyItem.attrs.edition) {
557
- const node = this.document.createElement('edition');
558
- node.textContent = String(bibliographyItem.attrs.edition);
559
- citation.appendChild(node);
560
- }
561
- if (bibliographyItem.attrs['publisher-place']) {
562
- const node = this.document.createElement('publisher-loc');
563
- node.textContent = String(bibliographyItem.attrs['publisher-place']);
564
- citation.appendChild(node);
565
- }
566
- if (bibliographyItem.attrs.publisher) {
567
- const node = this.document.createElement('publisher-name');
568
- node.textContent = String(bibliographyItem.attrs.publisher);
569
- citation.appendChild(node);
570
- }
571
- if (bibliographyItem.attrs.event) {
572
- const node = this.document.createElement('conf-name');
573
- node.textContent = String(bibliographyItem.attrs.event);
574
- citation.appendChild(node);
575
- }
576
- if (bibliographyItem.attrs['event-place']) {
577
- const node = this.document.createElement('conf-loc');
578
- node.textContent = String(bibliographyItem.attrs['event-place']);
579
- citation.appendChild(node);
580
- }
581
- const buildISODate = (date) => {
582
- const dateParts = date['date-parts'];
583
- if (dateParts && dateParts.length) {
584
- const [[year, month, day]] = dateParts;
585
- if (year && month && day) {
586
- return new Date(Date.UTC(Number(year), Number(month) - 1, Number(day)));
587
- }
588
- }
589
- };
590
- const eventDate = bibliographyItem.attrs['event-date'];
591
- if (eventDate) {
592
- const isoDate = buildISODate(eventDate);
593
- if (isoDate) {
594
- const node = this.document.createElement('conf-date');
595
- node.setAttribute('iso-8601-date', isoDate.toISOString());
596
- node.textContent = isoDate.toDateString();
597
- citation.appendChild(node);
598
- }
599
- }
600
- if (bibliographyItem.attrs['number-of-pages']) {
601
- const node = this.document.createElement('size');
602
- node.textContent = String(bibliographyItem.attrs['number-of-pages']);
603
- node.setAttribute('units', 'pages');
604
- citation.appendChild(node);
605
- }
606
- if (bibliographyItem.attrs.volume) {
607
- const node = this.document.createElement('volume');
608
- node.textContent = String(bibliographyItem.attrs.volume);
609
- citation.appendChild(node);
610
- }
611
- const dateInCitation = bibliographyItem.attrs['date-in-citation'];
612
- if (dateInCitation) {
613
- const isoDate = buildISODate(dateInCitation);
614
- if (isoDate) {
615
- const node = this.document.createElement('date-in-citation');
616
- node.setAttribute('iso-8601-date', isoDate.toISOString());
617
- node.textContent = isoDate.toDateString();
618
- citation.appendChild(node);
619
- }
620
- }
621
- if (bibliographyItem.attrs.institution) {
622
- const node = this.document.createElement('institution');
623
- node.textContent = String(bibliographyItem.attrs.institution);
624
- citation.appendChild(node);
625
- }
626
- if (bibliographyItem.attrs.elocationID) {
627
- const node = this.document.createElement('elocation-id');
628
- node.textContent = String(bibliographyItem.attrs.elocationID);
629
- citation.appendChild(node);
630
- }
631
- if (bibliographyItem.attrs.links) {
632
- for (const link of bibliographyItem.attrs.links) {
633
- const node = this.document.createElement('ext-link');
634
- node.setAttribute('ext-link-type', link.type);
635
- node.textContent = link.content;
636
- citation.appendChild(node);
637
- }
638
- }
639
546
  ref.appendChild(citation);
640
547
  refList.appendChild(ref);
641
548
  }
package/dist/es/jats/importer/jats-dom-parser.js CHANGED
@@ -131,161 +131,90 @@ export class JATSDOMParser {
131
131
  this.getHTMLContent = (node, querySelector) => {
132
132
  return htmlFromJatsNode(node.querySelector(querySelector));
133
133
  };
134
+ this.chooseBibliographyItemType = (publicationType) => {
135
+ switch (publicationType) {
136
+ case 'book':
137
+ case 'thesis':
138
+ return publicationType;
139
+ case 'journal':
140
+ default:
141
+ return 'article-journal';
142
+ }
143
+ };
134
144
  this.parseRef = (element) => {
135
- var _a;
136
- const mixedCitation = element.querySelector('mixed-citation');
137
- const elementCitation = element.querySelector('element-citation');
145
+ const publicationType = element.getAttribute('publication-type');
146
+ const authorNodes = [
147
+ ...element.querySelectorAll('person-group[person-group-type="author"] > *'),
148
+ ];
138
149
  const id = element.id;
139
- const publicationType = (_a = elementCitation === null || elementCitation === void 0 ? void 0 : elementCitation.getAttribute('publication-type')) !== null && _a !== void 0 ? _a : mixedCitation === null || mixedCitation === void 0 ? void 0 : mixedCitation.getAttribute('publication-type');
140
150
  const attrs = {
141
151
  id,
142
- type: publicationType === 'journal'
143
- ? 'article-journal'
144
- : publicationType !== null && publicationType !== void 0 ? publicationType : 'article-journal',
152
+ type: this.chooseBibliographyItemType(publicationType),
145
153
  };
146
154
  const title = this.getHTMLContent(element, 'article-title');
147
155
  if (title) {
148
156
  attrs.title = title;
149
157
  }
150
- const containerTitle = this.getHTMLContent(element, 'source');
151
- if (this.getHTMLContent(element, 'source')) {
152
- attrs.containerTitle = containerTitle;
153
- }
154
- const dataTitle = this.getHTMLContent(element, 'data-title');
155
- if (dataTitle) {
156
- attrs['data-title'] = dataTitle;
157
- }
158
- const authorNodes = [
159
- ...element.querySelectorAll('person-group[person-group-type="author"] > *'),
160
- ];
161
- const editorNodes = [
162
- ...element.querySelectorAll('person-group[person-group-type="editor"] > *'),
163
- ];
164
- if (authorNodes.length === 0) {
158
+ const mixedCitation = element.querySelector('mixed-citation');
159
+ if (authorNodes.length <= 0) {
165
160
  mixedCitation === null || mixedCitation === void 0 ? void 0 : mixedCitation.childNodes.forEach((item) => {
166
161
  var _a, _b;
167
162
  if (item.nodeType === Node.TEXT_NODE &&
168
163
  ((_a = item.textContent) === null || _a === void 0 ? void 0 : _a.match(/[A-Za-z]+/g))) {
169
164
  attrs.literal = (_b = getTrimmedTextContent(mixedCitation)) !== null && _b !== void 0 ? _b : '';
165
+ return attrs;
170
166
  }
171
167
  });
172
168
  }
173
- const buildDate = (element) => {
174
- var _a, _b, _c;
175
- const isoDate = element.getAttribute('iso-8601-date');
176
- const isoDateParts = isoDate === null || isoDate === void 0 ? void 0 : isoDate.split('-');
177
- return buildBibliographicDate({
178
- 'date-parts': [
179
- [
180
- (_a = isoDateParts === null || isoDateParts === void 0 ? void 0 : isoDateParts[0]) !== null && _a !== void 0 ? _a : '',
181
- (_b = isoDateParts === null || isoDateParts === void 0 ? void 0 : isoDateParts[1]) !== null && _b !== void 0 ? _b : '',
182
- (_c = isoDateParts === null || isoDateParts === void 0 ? void 0 : isoDateParts[2]) !== null && _c !== void 0 ? _c : '',
183
- ],
184
- ],
185
- });
186
- };
187
- const buildName = (node) => {
188
- const name = buildBibliographicName({});
189
- const given = getTrimmedTextContent(node, 'given-names');
190
- const family = getTrimmedTextContent(node, 'surname');
191
- if (given) {
192
- name.given = given;
193
- }
194
- if (family) {
195
- name.family = family;
196
- }
197
- if (node.nodeName === 'collab') {
198
- name.literal = getTrimmedTextContent(node);
199
- }
200
- return name;
201
- };
202
- if (authorNodes.length) {
203
- attrs.author = authorNodes.map(buildName);
204
- }
205
- if (editorNodes.length) {
206
- attrs.editor = editorNodes.map(buildName);
207
- }
208
- const getText = (selector) => getTrimmedTextContent(element, selector);
209
- if (getText('volume')) {
210
- attrs.volume = getText('volume');
211
- }
212
- if (getText('issue')) {
213
- attrs.issue = getText('issue');
214
- }
215
- if (getText('supplement')) {
216
- attrs.supplement = getText('supplement');
217
- }
218
- if (getText('pub-id[pub-id-type="doi"]')) {
219
- attrs.doi = getText('pub-id[pub-id-type="doi"]');
220
- }
221
- if (getText('std')) {
222
- attrs.std = getText('std');
223
- }
224
- if (getText('series')) {
225
- attrs.series = getText('series');
226
- }
227
- if (getText('edition')) {
228
- attrs.edition = getText('edition');
229
- }
230
- if (getText('publisher-name')) {
231
- attrs.publisher = getText('publisher-name');
169
+ const source = this.getHTMLContent(element, 'source');
170
+ if (source) {
171
+ attrs.containerTitle = source;
232
172
  }
233
- if (getText('publisher-loc')) {
234
- attrs['publisher-place'] = getText('publisher-loc');
173
+ const volume = getTrimmedTextContent(element, 'volume');
174
+ if (volume) {
175
+ attrs.volume = volume;
235
176
  }
236
- if (getText('conf-name')) {
237
- attrs['event'] = getText('conf-name');
177
+ const issue = getTrimmedTextContent(element, 'issue');
178
+ if (issue) {
179
+ attrs.issue = issue;
238
180
  }
239
- if (getText('conf-loc')) {
240
- attrs['event-place'] = getText('conf-loc');
181
+ const supplement = getTrimmedTextContent(element, 'supplement');
182
+ if (supplement) {
183
+ attrs.supplement = supplement;
241
184
  }
242
- if (getText('size[units="pages"]')) {
243
- attrs['number-of-pages'] = getText('size[units="pages"]');
244
- }
245
- if (getText('institution')) {
246
- attrs.institution = getText('institution');
247
- }
248
- if (getText('elocation-id')) {
249
- attrs.elocationID = getText('elocation-id');
250
- }
251
- const fpage = getText('fpage');
252
- const lpage = getText('lpage');
185
+ const fpage = getTrimmedTextContent(element, 'fpage');
186
+ const lpage = getTrimmedTextContent(element, 'lpage');
253
187
  if (fpage) {
254
188
  attrs.page = lpage ? `${fpage}-${lpage}` : fpage;
255
189
  }
256
- const year = getText('year');
190
+ const year = getTrimmedTextContent(element, 'year');
257
191
  if (year) {
258
192
  attrs.issued = buildBibliographicDate({
259
- 'date-parts': [[year, getText('month') || '', getText('day') || '']],
193
+ 'date-parts': [[year]],
260
194
  });
261
195
  }
262
- const pubIDs = Array.from(element.querySelectorAll('pub-id:not([pub-id-type="doi"])')).map((node) => ({
263
- content: getTrimmedTextContent(node),
264
- type: node.getAttribute('pub-id-type') || '',
265
- }));
266
- if (pubIDs.length) {
267
- attrs.pubIDs = pubIDs;
196
+ const doi = getTrimmedTextContent(element, 'pub-id[pub-id-type="doi"]');
197
+ if (doi) {
198
+ attrs.doi = doi;
268
199
  }
269
- const links = Array.from(element.querySelectorAll('ext-link')).map((node) => ({
270
- content: getTrimmedTextContent(node),
271
- type: node.getAttribute('ext-link-type') || '',
272
- }));
273
- if (links.length) {
274
- attrs.links = links;
275
- }
276
- const dateInCitation = element.querySelector('date-in-citation');
277
- if (dateInCitation) {
278
- const date = buildDate(dateInCitation);
279
- if (date) {
280
- attrs['date-in-citation'] = date;
200
+ const authors = [];
201
+ authorNodes.forEach((authorNode) => {
202
+ const name = buildBibliographicName({});
203
+ const given = getTrimmedTextContent(authorNode, 'given-names');
204
+ if (given) {
205
+ name.given = given;
281
206
  }
282
- }
283
- const eventDate = element.querySelector('conf-date');
284
- if (eventDate) {
285
- const date = buildDate(eventDate);
286
- if (date) {
287
- attrs['event-date'] = date;
207
+ const family = getTrimmedTextContent(authorNode, 'surname');
208
+ if (family) {
209
+ name.family = family;
210
+ }
211
+ if (authorNode.nodeName === 'collab') {
212
+ name.literal = getTrimmedTextContent(authorNode);
288
213
  }
214
+ authors.push(name);
215
+ });
216
+ if (authors.length) {
217
+ attrs.author = authors;
289
218
  }
290
219
  return attrs;
291
220
  };
package/dist/es/schema/nodes/bibliography_item.js CHANGED
@@ -19,31 +19,15 @@ export const bibliographyItem = {
19
19
  id: { default: '' },
20
20
  type: { default: undefined },
21
21
  author: { default: undefined },
22
- doi: { default: undefined },
23
22
  issued: { default: undefined },
24
23
  containerTitle: { default: undefined },
24
+ doi: { default: undefined },
25
25
  volume: { default: undefined },
26
26
  issue: { default: undefined },
27
27
  supplement: { default: undefined },
28
28
  page: { default: undefined },
29
29
  title: { default: undefined },
30
30
  literal: { default: undefined },
31
- 'data-title': { default: undefined },
32
- std: { default: undefined },
33
- series: { default: undefined },
34
- edition: { default: undefined },
35
- publisher: { default: undefined },
36
- 'publisher-place': { default: undefined },
37
- event: { default: undefined },
38
- 'event-place': { default: undefined },
39
- 'event-date': { default: undefined },
40
- institution: { default: undefined },
41
- editor: { default: undefined },
42
- elocationID: { default: undefined },
43
- links: { default: undefined },
44
- 'number-of-pages': { default: undefined },
45
- pubIDs: { default: undefined },
46
- 'date-in-citation': { default: undefined },
47
31
  dataTracked: { default: null },
48
32
  },
49
33
  selectable: false,
package/dist/es/version.js CHANGED
@@ -1 +1 @@
1
- export const VERSION = "3.0.50-LEAN-4405.0";
1
+ export const VERSION = "3.0.50";
package/dist/types/jats/importer/jats-dom-parser.d.ts CHANGED
@@ -32,6 +32,7 @@ export declare class JATSDOMParser {
32
32
  private getInstitutionDetails;
33
33
  private getAddressLine;
34
34
  private getHTMLContent;
35
+ private chooseBibliographyItemType;
35
36
  private parseRef;
36
37
  private nodes;
37
38
  private marks;
package/dist/types/schema/nodes/bibliography_item.d.ts CHANGED
@@ -16,41 +16,20 @@
16
16
  import { BibliographicDate, BibliographicName } from '@manuscripts/json-schema';
17
17
  import { NodeSpec } from 'prosemirror-model';
18
18
  import { ManuscriptNode } from '../types';
19
- export type BibliographyItemAttr = {
20
- type?: string;
21
- content?: string;
22
- };
23
19
  export interface BibliographyItemAttrs {
24
20
  id: string;
25
21
  type: string;
26
22
  author?: BibliographicName[];
27
23
  issued?: BibliographicDate;
28
24
  containerTitle?: string;
25
+ doi?: string;
29
26
  volume?: string;
30
27
  issue?: string;
31
28
  supplement?: string;
32
29
  page?: string;
33
30
  title?: string;
34
31
  literal?: string;
35
- 'data-title'?: string;
36
- std?: string;
37
- series?: string;
38
- edition?: string;
39
- 'publisher-place'?: string;
40
- publisher?: string;
41
- event?: string;
42
- 'event-place'?: string;
43
- 'event-date'?: BibliographicDate;
44
- institution?: string;
45
- editor?: BibliographicName[];
46
- elocationID?: string;
47
- links?: BibliographyItemAttr[];
48
- 'number-of-pages'?: string;
49
- 'date-in-citation'?: BibliographicDate;
50
- pubIDs?: BibliographyItemAttr[];
51
- doi?: string;
52
32
  }
53
- export type BibliographyItemType = 'article-journal' | 'book' | 'chapter' | 'paper-conference' | 'thesis' | 'webpage' | 'other' | 'standard' | 'dataset' | 'preprint';
54
33
  export interface BibliographyItemNode extends ManuscriptNode {
55
34
  attrs: BibliographyItemAttrs;
56
35
  }
package/dist/types/version.d.ts CHANGED
@@ -1 +1 @@
1
- export declare const VERSION = "3.0.50-LEAN-4405.0";
1
+ export declare const VERSION = "3.0.50";
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "@manuscripts/transform",
3
3
  "description": "ProseMirror transformer for Manuscripts applications",
4
- "version": "3.0.50-LEAN-4405.0",
4
+ "version": "3.0.50",
5
5
  "repository": "github:Atypon-OpenSource/manuscripts-transform",
6
6
  "license": "Apache-2.0",
7
7
  "main": "dist/cjs",
@@ -31,7 +31,7 @@
31
31
  },
32
32
  "dependencies": {
33
33
  "@manuscripts/json-schema": "2.2.11",
34
- "@manuscripts/library": "1.3.11",
34
+ "@manuscripts/library": "1.3.13",
35
35
  "debug": "^4.3.4",
36
36
  "jszip": "^3.10.1",
37
37
  "lodash": "^4.17.21",
package/dist/cjs/schema/migration/migration-scripts/3.0.47.js DELETED
@@ -1,19 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- class Migration3047 {
4
- constructor() {
5
- this.fromVersion = '3.0.46';
6
- this.toVersion = '3.0.47';
7
- }
8
- migrateNode(node) {
9
- if (node.type === 'bibliography_item') {
10
- const authors = node.attrs.author || [];
11
- const doi = node.attrs.doi;
12
- delete node.attrs.author;
13
- delete node.attrs.doi;
14
- return Object.assign(Object.assign({}, node), { attrs: Object.assign(Object.assign({}, node.attrs), { authors, pubIDs: doi ? [{ type: 'doi', content: doi }] : [] }) });
15
- }
16
- return node;
17
- }
18
- }
19
- exports.default = Migration3047;
package/dist/es/schema/migration/migration-scripts/3.0.47.js DELETED
@@ -1,17 +0,0 @@
1
- class Migration3047 {
2
- constructor() {
3
- this.fromVersion = '3.0.46';
4
- this.toVersion = '3.0.47';
5
- }
6
- migrateNode(node) {
7
- if (node.type === 'bibliography_item') {
8
- const authors = node.attrs.author || [];
9
- const doi = node.attrs.doi;
10
- delete node.attrs.author;
11
- delete node.attrs.doi;
12
- return Object.assign(Object.assign({}, node), { attrs: Object.assign(Object.assign({}, node.attrs), { authors, pubIDs: doi ? [{ type: 'doi', content: doi }] : [] }) });
13
- }
14
- return node;
15
- }
16
- }
17
- export default Migration3047;
package/dist/types/schema/migration/migration-scripts/3.0.47.d.ts DELETED
@@ -1,8 +0,0 @@
1
- import { JSONNode } from '../migrate';
2
- import { MigrationScript } from '../migration-script';
3
- declare class Migration3047 implements MigrationScript {
4
- fromVersion: string;
5
- toVersion: string;
6
- migrateNode(node: JSONNode): JSONNode;
7
- }
8
- export default Migration3047;