@manuscripts/transform 3.0.5-LEAN-3958.0 → 3.0.5

package/dist/cjs/jats/exporter/jats-exporter.js

@@ -291,6 +291,35 @@ class JATSExporter {
                 supplementaryMaterial.append(caption);
                 articleMeta.append(supplementaryMaterial);
             });
+            const history = articleMeta.querySelector('history') ||
+                this.document.createElement('history');
+            if (this.manuscriptNode.attrs.acceptanceDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.acceptanceDate, 'accepted');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.correctionDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.correctionDate, 'corrected');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.retractionDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.retractionDate, 'retracted');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.receiveDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.receiveDate, 'received');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.revisionReceiveDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.revisionReceiveDate, 'rev-recd');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.revisionRequestDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.revisionRequestDate, 'rev-request');
+                history.appendChild(date);
+            }
+            if (history.childElementCount) {
+                articleMeta.appendChild(history);
+            }
             this.buildKeywords(articleMeta);
             let countingElements = [];
             const figureCount = (0, prosemirror_utils_1.findChildrenByType)(this.manuscriptNode, schema_1.schema.nodes.figure).length;

package/dist/cjs/jats/importer/jats-dom-parser.js

@@ -69,6 +69,42 @@ const getEquationContent = (p) => {
     }
     return { id, format, contents };
 };
+const parseDates = (historyNode) => {
+    if (!historyNode) {
+        return undefined;
+    }
+    const history = {};
+    for (const date of historyNode.children) {
+        const dateType = date.getAttribute('date-type');
+        switch (dateType) {
+            case 'received': {
+                history.receiveDate = (0, utils_1.dateToTimestamp)(date);
+                break;
+            }
+            case 'rev-recd': {
+                history.revisionReceiveDate = (0, utils_1.dateToTimestamp)(date);
+                break;
+            }
+            case 'accepted': {
+                history.acceptanceDate = (0, utils_1.dateToTimestamp)(date);
+                break;
+            }
+            case 'rev-request': {
+                history.revisionRequestDate = (0, utils_1.dateToTimestamp)(date);
+                break;
+            }
+            case 'retracted': {
+                history.retractionDate = (0, utils_1.dateToTimestamp)(date);
+                break;
+            }
+            case 'corrected': {
+                history.correctionDate = (0, utils_1.dateToTimestamp)(date);
+                break;
+            }
+        }
+    }
+    return history;
+};
 const getEmail = (element) => {
     var _a, _b, _c;
     const email = element.querySelector('email');
@@ -241,11 +277,9 @@ const nodes = [
             var _a, _b;
             const element = node;
             const doi = element.querySelector('front > article-meta > article-id[pub-id-type="doi"]');
-            return {
-                doi: doi === null || doi === void 0 ? void 0 : doi.textContent,
-                articleType: (_a = element.getAttribute('article-type')) !== null && _a !== void 0 ? _a : '',
-                primaryLanguageCode: (_b = element.getAttribute('lang')) !== null && _b !== void 0 ? _b : '',
-            };
+            const history = element.querySelector('history');
+            const dates = parseDates(history);
+            return Object.assign({ doi: doi === null || doi === void 0 ? void 0 : doi.textContent, articleType: (_a = element.getAttribute('article-type')) !== null && _a !== void 0 ? _a : '', primaryLanguageCode: (_b = element.getAttribute('lang')) !== null && _b !== void 0 ? _b : '' }, dates);
         },
     },
     {
@@ -438,6 +472,10 @@ const nodes = [
         tag: 'back',
         ignore: true,
     },
+    {
+        tag: 'history',
+        ignore: true,
+    },
     {
         tag: 'break',
         node: 'hard_break',

package/dist/cjs/lib/utils.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.timestamp = exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
+exports.dateToTimestamp = exports.timestamp = exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
 const bibliography_section_1 = require("../schema/nodes/bibliography_section");
 const graphical_abstract_section_1 = require("../schema/nodes/graphical_abstract_section");
 function* iterateChildren(node, recurse = false) {
@@ -85,3 +85,16 @@ const getTrimmedTextContent = (node, querySelector) => {
 exports.getTrimmedTextContent = getTrimmedTextContent;
 const timestamp = () => Math.floor(Date.now() / 1000);
 exports.timestamp = timestamp;
+const dateToTimestamp = (dateElement) => {
+    const selectors = ['year', 'month', 'day'];
+    const values = [];
+    for (const selector of selectors) {
+        const value = (0, exports.getTrimmedTextContent)(dateElement, selector);
+        if (!value || isNaN(+value)) {
+            return;
+        }
+        values.push(+value);
+    }
+    return Date.UTC(values[0], values[1], values[2]) / 1000;
+};
+exports.dateToTimestamp = dateToTimestamp;

package/dist/cjs/schema/nodes/inline_footnote.js

@@ -17,6 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isInlineFootnoteNode = exports.inlineFootnote = void 0;
 exports.inlineFootnote = {
+    name: 'Footnote marker',
     attrs: {
         rids: { default: [] },
         contents: { default: '' },

package/dist/cjs/schema/nodes/manuscript.js

@@ -24,6 +24,12 @@ exports.manuscript = {
         prototype: { default: '' },
         primaryLanguageCode: { default: '' },
         articleType: { default: '' },
+        acceptanceDate: { default: undefined },
+        correctionDate: { default: undefined },
+        retractionDate: { default: undefined },
+        revisionRequestDate: { default: undefined },
+        revisionReceiveDate: { default: undefined },
+        receiveDate: { default: undefined },
     },
     group: 'block',
     parseDOM: [

package/dist/cjs/transformer/node-names.js

@@ -18,41 +18,26 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.nodeNames = void 0;
 const schema_1 = require("../schema");
 exports.nodeNames = new Map([
-    [schema_1.schema.nodes.title, 'Title'],
-    [schema_1.schema.nodes.contributor, 'Author'],
-    [schema_1.schema.nodes.keywords, 'Keywords'],
-    [schema_1.schema.nodes.keyword, 'Keyword'],
     [schema_1.schema.nodes.bibliography_element, 'Bibliography'],
-    [schema_1.schema.nodes.bibliography_item, 'Reference'],
     [schema_1.schema.nodes.bibliography_section, 'Section'],
     [schema_1.schema.nodes.citation, 'Citation'],
     [schema_1.schema.nodes.listing_element, 'Listing'],
     [schema_1.schema.nodes.cross_reference, 'Cross Reference'],
     [schema_1.schema.nodes.equation_element, 'Equation'],
     [schema_1.schema.nodes.figure_element, 'Figure'],
-    [schema_1.schema.nodes.table_element, 'Table'],
-    [schema_1.schema.nodes.table_cell, 'Table Cell'],
-    [schema_1.schema.nodes.table_col, 'Table Column'],
-    [schema_1.schema.nodes.table_row, 'Table Row'],
-    [schema_1.schema.nodes.table_header, 'Table Header'],
-    [schema_1.schema.nodes.general_table_footnote, 'General Table note'],
-    [schema_1.schema.nodes.table_element_footer, 'Table Footer'],
-    [schema_1.schema.nodes.equation, 'Equation'],
-    [schema_1.schema.nodes.inline_equation, 'Inline Equation'],
-    [schema_1.schema.nodes.inline_footnote, 'Footnote Reference'],
     [schema_1.schema.nodes.footnote, 'Footnote'],
     [schema_1.schema.nodes.footnotes_element, 'Notes'],
     [schema_1.schema.nodes.list, 'List'],
-    [schema_1.schema.nodes.list_item, 'List Item'],
     [schema_1.schema.nodes.manuscript, 'Manuscript'],
     [schema_1.schema.nodes.paragraph, 'Paragraph'],
     [schema_1.schema.nodes.section, 'Section'],
-    [schema_1.schema.nodes.section_title, 'Section Title'],
-    [schema_1.schema.nodes.section_title_plain, 'Section Title'],
+    [schema_1.schema.nodes.section_title, 'Section'],
+    [schema_1.schema.nodes.section_title_plain, 'Section'],
     [schema_1.schema.nodes.table, 'Table'],
     [schema_1.schema.nodes.table_element, 'Table'],
     [schema_1.schema.nodes.blockquote_element, 'Block Quote'],
     [schema_1.schema.nodes.pullquote_element, 'Pull Quote'],
+    [schema_1.schema.nodes.keywords, 'Section'],
     [schema_1.schema.nodes.toc_section, 'Section'],
     [schema_1.schema.nodes.box_element, 'Box'],
 ]);

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.VERSION = void 0;
-exports.VERSION = "3.0.5-LEAN-3958.0";
+exports.VERSION = "3.0.5";

package/dist/es/jats/exporter/jats-exporter.js

@@ -283,6 +283,35 @@ export class JATSExporter {
                 supplementaryMaterial.append(caption);
                 articleMeta.append(supplementaryMaterial);
             });
+            const history = articleMeta.querySelector('history') ||
+                this.document.createElement('history');
+            if (this.manuscriptNode.attrs.acceptanceDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.acceptanceDate, 'accepted');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.correctionDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.correctionDate, 'corrected');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.retractionDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.retractionDate, 'retracted');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.receiveDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.receiveDate, 'received');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.revisionReceiveDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.revisionReceiveDate, 'rev-recd');
+                history.appendChild(date);
+            }
+            if (this.manuscriptNode.attrs.revisionRequestDate) {
+                const date = this.buildDateElement(this.manuscriptNode.attrs.revisionRequestDate, 'rev-request');
+                history.appendChild(date);
+            }
+            if (history.childElementCount) {
+                articleMeta.appendChild(history);
+            }
             this.buildKeywords(articleMeta);
             let countingElements = [];
             const figureCount = findChildrenByType(this.manuscriptNode, schema.nodes.figure).length;

package/dist/es/jats/importer/jats-dom-parser.js

@@ -16,7 +16,7 @@
 import { buildBibliographicDate, buildBibliographicName, buildContribution, ObjectTypes, } from '@manuscripts/json-schema';
 import mime from 'mime';
 import { DOMParser, Fragment } from 'prosemirror-model';
-import { getTrimmedTextContent } from '../../lib/utils';
+import { dateToTimestamp, getTrimmedTextContent } from '../../lib/utils';
 import { schema, } from '../../schema';
 import { chooseSectionCategory } from '../../transformer';
 import { DEFAULT_PROFILE_ID } from './jats-comments';
@@ -63,6 +63,42 @@ const getEquationContent = (p) => {
     }
     return { id, format, contents };
 };
+const parseDates = (historyNode) => {
+    if (!historyNode) {
+        return undefined;
+    }
+    const history = {};
+    for (const date of historyNode.children) {
+        const dateType = date.getAttribute('date-type');
+        switch (dateType) {
+            case 'received': {
+                history.receiveDate = dateToTimestamp(date);
+                break;
+            }
+            case 'rev-recd': {
+                history.revisionReceiveDate = dateToTimestamp(date);
+                break;
+            }
+            case 'accepted': {
+                history.acceptanceDate = dateToTimestamp(date);
+                break;
+            }
+            case 'rev-request': {
+                history.revisionRequestDate = dateToTimestamp(date);
+                break;
+            }
+            case 'retracted': {
+                history.retractionDate = dateToTimestamp(date);
+                break;
+            }
+            case 'corrected': {
+                history.correctionDate = dateToTimestamp(date);
+                break;
+            }
+        }
+    }
+    return history;
+};
 const getEmail = (element) => {
     var _a, _b, _c;
     const email = element.querySelector('email');
@@ -235,11 +271,9 @@ const nodes = [
             var _a, _b;
             const element = node;
             const doi = element.querySelector('front > article-meta > article-id[pub-id-type="doi"]');
-            return {
-                doi: doi === null || doi === void 0 ? void 0 : doi.textContent,
-                articleType: (_a = element.getAttribute('article-type')) !== null && _a !== void 0 ? _a : '',
-                primaryLanguageCode: (_b = element.getAttribute('lang')) !== null && _b !== void 0 ? _b : '',
-            };
+            const history = element.querySelector('history');
+            const dates = parseDates(history);
+            return Object.assign({ doi: doi === null || doi === void 0 ? void 0 : doi.textContent, articleType: (_a = element.getAttribute('article-type')) !== null && _a !== void 0 ? _a : '', primaryLanguageCode: (_b = element.getAttribute('lang')) !== null && _b !== void 0 ? _b : '' }, dates);
         },
     },
     {
@@ -432,6 +466,10 @@ const nodes = [
         tag: 'back',
         ignore: true,
     },
+    {
+        tag: 'history',
+        ignore: true,
+    },
     {
         tag: 'break',
         node: 'hard_break',

package/dist/es/lib/utils.js

@@ -75,3 +75,15 @@ export const getTrimmedTextContent = (node, querySelector) => {
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
 export const timestamp = () => Math.floor(Date.now() / 1000);
+export const dateToTimestamp = (dateElement) => {
+    const selectors = ['year', 'month', 'day'];
+    const values = [];
+    for (const selector of selectors) {
+        const value = getTrimmedTextContent(dateElement, selector);
+        if (!value || isNaN(+value)) {
+            return;
+        }
+        values.push(+value);
+    }
+    return Date.UTC(values[0], values[1], values[2]) / 1000;
+};

package/dist/es/schema/nodes/inline_footnote.js

@@ -14,6 +14,7 @@
  * limitations under the License.
  */
 export const inlineFootnote = {
+    name: 'Footnote marker',
     attrs: {
         rids: { default: [] },
         contents: { default: '' },

package/dist/es/schema/nodes/manuscript.js

@@ -21,6 +21,12 @@ export const manuscript = {
         prototype: { default: '' },
         primaryLanguageCode: { default: '' },
         articleType: { default: '' },
+        acceptanceDate: { default: undefined },
+        correctionDate: { default: undefined },
+        retractionDate: { default: undefined },
+        revisionRequestDate: { default: undefined },
+        revisionReceiveDate: { default: undefined },
+        receiveDate: { default: undefined },
     },
     group: 'block',
     parseDOM: [

package/dist/es/transformer/node-names.js

@@ -15,41 +15,26 @@
  */
 import { schema } from '../schema';
 export const nodeNames = new Map([
-    [schema.nodes.title, 'Title'],
-    [schema.nodes.contributor, 'Author'],
-    [schema.nodes.keywords, 'Keywords'],
-    [schema.nodes.keyword, 'Keyword'],
     [schema.nodes.bibliography_element, 'Bibliography'],
-    [schema.nodes.bibliography_item, 'Reference'],
     [schema.nodes.bibliography_section, 'Section'],
     [schema.nodes.citation, 'Citation'],
     [schema.nodes.listing_element, 'Listing'],
     [schema.nodes.cross_reference, 'Cross Reference'],
     [schema.nodes.equation_element, 'Equation'],
     [schema.nodes.figure_element, 'Figure'],
-    [schema.nodes.table_element, 'Table'],
-    [schema.nodes.table_cell, 'Table Cell'],
-    [schema.nodes.table_col, 'Table Column'],
-    [schema.nodes.table_row, 'Table Row'],
-    [schema.nodes.table_header, 'Table Header'],
-    [schema.nodes.general_table_footnote, 'General Table note'],
-    [schema.nodes.table_element_footer, 'Table Footer'],
-    [schema.nodes.equation, 'Equation'],
-    [schema.nodes.inline_equation, 'Inline Equation'],
-    [schema.nodes.inline_footnote, 'Footnote Reference'],
     [schema.nodes.footnote, 'Footnote'],
     [schema.nodes.footnotes_element, 'Notes'],
     [schema.nodes.list, 'List'],
-    [schema.nodes.list_item, 'List Item'],
     [schema.nodes.manuscript, 'Manuscript'],
     [schema.nodes.paragraph, 'Paragraph'],
     [schema.nodes.section, 'Section'],
-    [schema.nodes.section_title, 'Section Title'],
-    [schema.nodes.section_title_plain, 'Section Title'],
+    [schema.nodes.section_title, 'Section'],
+    [schema.nodes.section_title_plain, 'Section'],
     [schema.nodes.table, 'Table'],
     [schema.nodes.table_element, 'Table'],
     [schema.nodes.blockquote_element, 'Block Quote'],
     [schema.nodes.pullquote_element, 'Pull Quote'],
+    [schema.nodes.keywords, 'Section'],
     [schema.nodes.toc_section, 'Section'],
     [schema.nodes.box_element, 'Box'],
 ]);

package/dist/es/version.js

@@ -1 +1 @@
-export const VERSION = "3.0.5-LEAN-3958.0";
+export const VERSION = "3.0.5";

package/dist/types/lib/table-cell-styles.d.ts

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 export declare const TABLE_CELL_STYLES: readonly ["backgroundColor", "border-top", "border-right", "border-bottom", "border-left", "verticalAlign", "textAlign"];
-export type TableCellStyleKey = (typeof TABLE_CELL_STYLES)[number];
+export type TableCellStyleKey = typeof TABLE_CELL_STYLES[number];
 export declare const serializeTableCellStyles: (styles: {
     backgroundColor?: string | null | undefined;
     "border-top"?: string | null | undefined;

package/dist/types/lib/utils.d.ts

@@ -27,3 +27,4 @@ export declare const findParentNodeClosestToPos: ($pos: ResolvedPos, predicate:
 } | undefined;
 export declare const getTrimmedTextContent: (node: Element | Document | null, querySelector: string) => string | null | undefined;
 export declare const timestamp: () => number;
+export declare const dateToTimestamp: (dateElement: Element) => number | undefined;

package/dist/types/schema/nodes/manuscript.d.ts

@@ -24,6 +24,12 @@ export interface ManuscriptAttrs {
     articleType: string;
     prototype: string;
     primaryLanguageCode: string;
+    acceptanceDate?: number;
+    correctionDate?: number;
+    retractionDate?: number;
+    revisionRequestDate?: number;
+    revisionReceiveDate?: number;
+    receiveDate?: number;
 }
 export declare const manuscript: NodeSpec;
 export declare const isManuscriptNode: (node: ManuscriptNode) => node is import("prosemirror-model").Node;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const VERSION = "3.0.5-LEAN-3958.0";
+export declare const VERSION = "3.0.5";

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "3.0.5-LEAN-3958.0",
+  "version": "3.0.5",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",
@@ -83,4 +83,4 @@
     "rimraf": "^3.0.2",
     "typescript": "^4.0.5"
   }
-}
+}

package/dist/cjs/jats/importer/jats-body-transformations.js

@@ -1,326 +0,0 @@
-"use strict";
-/*!
- * © 2020 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.jatsBodyTransformations = void 0;
-const section_group_type_1 = require("../../lib/section-group-type");
-const transformer_1 = require("../../transformer");
-const removeNodeFromParent = (node) => node.parentNode && node.parentNode.removeChild(node);
-const capitalizeFirstLetter = (str) => str.charAt(0).toUpperCase() + str.slice(1);
-const createSectionGroup = (type, createElement) => {
-    const sec = createElement('sec');
-    sec.setAttribute('sec-type', type._id);
-    const title = createElement('title');
-    title.textContent = type.title;
-    sec.appendChild(title);
-    return sec;
-};
-exports.jatsBodyTransformations = {
-    ensureSection(body, createElement) {
-        let section;
-        const element = body.firstElementChild;
-        if (element && element.tagName === 'sec') {
-            section = element;
-        }
-        else {
-            section = createElement('sec');
-            body.insertBefore(section, body.firstChild);
-        }
-        body.childNodes.forEach((child) => {
-            if (child.nodeType === Node.ELEMENT_NODE) {
-                const element = child;
-                if (element.tagName !== 'sec') {
-                    section.appendChild(element);
-                }
-                else {
-                    section = element;
-                }
-            }
-        });
-    },
-    createAbstractSection(abstractNode, createElement) {
-        const abstractType = abstractNode.getAttribute('abstract-type');
-        const section = createElement('sec');
-        const sectionType = abstractType ? `abstract-${abstractType}` : 'abstract';
-        section.setAttribute('sec-type', sectionType);
-        if (!abstractNode.querySelector('abstract > title')) {
-            const title = createElement('title');
-            title.textContent = abstractType
-                ? `${capitalizeFirstLetter(abstractType)} Abstract`
-                : 'Abstract';
-            section.appendChild(title);
-        }
-        while (abstractNode.firstChild) {
-            section.appendChild(abstractNode.firstChild);
-        }
-        return section;
-    },
-    createAcknowledgmentsSection(ackNode, createElement) {
-        const section = createElement('sec');
-        section.setAttribute('sec-type', 'acknowledgments');
-        const titleNode = ackNode.querySelector('title');
-        if (titleNode) {
-            section.appendChild(titleNode);
-        }
-        else {
-            const title = createElement('title');
-            title.textContent = 'Acknowledgements';
-            section.appendChild(title);
-        }
-        while (ackNode.firstChild) {
-            section.appendChild(ackNode.firstChild);
-        }
-        return section;
-    },
-    createFootnotesSection(footnoteGroups, createElement) {
-        const section = createElement('sec');
-        section.setAttribute('sec-type', 'endnotes');
-        const titleNode = footnoteGroups
-            .map((g) => g.querySelector('title'))
-            .filter((t) => t !== null)[0];
-        if (titleNode) {
-            section.appendChild(titleNode);
-        }
-        else {
-            const title = createElement('title');
-            title.textContent = 'Footnotes';
-            section.appendChild(title);
-        }
-        for (const footnoteGroup of footnoteGroups) {
-            section.appendChild(footnoteGroup);
-        }
-        return section;
-    },
-    createAppendixSection(app, createElement) {
-        const section = createElement('sec');
-        section.setAttribute('sec-type', 'appendices');
-        section.append(...app.children);
-        return section;
-    },
-    createFloatsGroupSection(group, createElement) {
-        const section = createElement('sec');
-        section.setAttribute('sec-type', 'floating-element');
-        const title = createElement('title');
-        title.textContent = 'Floating Group';
-        section.appendChild(title);
-        section.append(...group.children);
-        return section;
-    },
-    moveAbstracts(doc, group, createElement) {
-        const abstracts = doc.querySelectorAll('front > article-meta > abstract');
-        abstracts.forEach((abstract) => {
-            const sec = this.createAbstractSection(abstract, createElement);
-            removeNodeFromParent(abstract);
-            group.appendChild(sec);
-        });
-    },
-    wrapBodySections(doc, group) {
-        const bodySections = doc.querySelectorAll('body > sec:not([sec-type="backmatter"]), body > sec:not([sec-type])');
-        bodySections.forEach((section) => {
-            removeNodeFromParent(section);
-            group.appendChild(section);
-        });
-    },
-    moveBackSections(doc, group) {
-        for (const section of doc.querySelectorAll('back > sec')) {
-            removeNodeFromParent(section);
-            group.appendChild(section);
-        }
-    },
-    moveAcknowledgments(doc, group, createElement) {
-        const ack = doc.querySelector('back > ack');
-        if (ack) {
-            const sec = this.createAcknowledgmentsSection(ack, createElement);
-            removeNodeFromParent(ack);
-            group.appendChild(sec);
-        }
-    },
-    moveAppendices(doc, group, createElement) {
-        const apps = doc.querySelectorAll('back > app-group > app');
-        for (const app of apps) {
-            const sec = this.createAppendixSection(app, createElement);
-            removeNodeFromParent(app);
-            group.appendChild(sec);
-        }
-    },
-    createBoxedElementSection(doc, body, createElement) {
-        const boxedTexts = body.querySelectorAll('boxed-text');
-        for (const boxedText of boxedTexts) {
-            const boxElementSec = createElement('sec');
-            boxElementSec.setAttribute('sec-type', 'box-element');
-            const title = createElement('title');
-            title.textContent = 'BoxElement';
-            boxElementSec.append(title);
-            for (const element of [...boxedText.children]) {
-                if ((element === null || element === void 0 ? void 0 : element.tagName) === 'label' || (element === null || element === void 0 ? void 0 : element.tagName) === 'caption') {
-                    boxElementSec.append(element);
-                }
-            }
-            const containerSection = createElement('sec');
-            containerSection.append(...boxedText.children);
-            boxElementSec.append(containerSection);
-            boxedText.replaceWith(boxElementSec);
-        }
-    },
-    createBody(doc, body, createElement) {
-        const group = createSectionGroup(section_group_type_1.bodyType, createElement);
-        this.wrapBodySections(doc, group);
-        this.moveFloatsGroupToBody(doc, group, createElement);
-        body.append(group);
-    },
-    createAbstracts(doc, body, createElement) {
-        const group = createSectionGroup(section_group_type_1.abstractsType, createElement);
-        this.moveAbstracts(doc, group, createElement);
-        body.insertBefore(group, body.lastElementChild);
-    },
-    createBackmatter(doc, body, createElement) {
-        const group = createSectionGroup(section_group_type_1.backmatterType, createElement);
-        this.moveBackSections(doc, group);
-        this.moveAppendices(doc, group, createElement);
-        this.moveSpecialFootnotes(doc, group, createElement);
-        this.moveFootnotes(doc, group, createElement);
-        this.moveAcknowledgments(doc, group, createElement);
-        body.append(group);
-    },
-    moveSpecialFootnotes(doc, group, createElement) {
-        var _a;
-        const fns = [...doc.querySelectorAll('fn[fn-type]')];
-        for (const fn of fns) {
-            const type = fn.getAttribute('fn-type') || '';
-            const category = (0, transformer_1.chooseSectionCategoryByType)(type);
-            if (category) {
-                const section = createElement('sec');
-                const title = fn.querySelector('p[content-type="fn-title"]');
-                if (title) {
-                    const sectionTitleElement = createElement('title');
-                    const titleTextContent = (_a = title.textContent) === null || _a === void 0 ? void 0 : _a.trim();
-                    if (titleTextContent) {
-                        sectionTitleElement.textContent = titleTextContent;
-                    }
-                    removeNodeFromParent(title);
-                    section.append(sectionTitleElement);
-                }
-                section.append(...fn.children);
-                removeNodeFromParent(fn);
-                section.setAttribute('sec-type', (0, transformer_1.chooseSecType)(category));
-                group.append(section);
-            }
-        }
-    },
-    moveFootnotes(doc, group, createElement) {
-        var _a;
-        const footnotes = Array.from(doc.querySelectorAll('fn:not(table-wrap-foot fn, author-notes fn)'));
-        let footnotesSection = doc.querySelector('sec[sec-type="endnotes"]');
-        const containingGroup = (footnotesSection === null || footnotesSection === void 0 ? void 0 : footnotesSection.querySelector('fn-group')) || createElement('fn-group');
-        footnotes.forEach((footnote) => {
-            if (!footnote.getAttribute('fn-type')) {
-                containingGroup.appendChild(footnote);
-            }
-        });
-        if (!footnotesSection && containingGroup.innerHTML) {
-            footnotesSection = this.createFootnotesSection([containingGroup], createElement);
-        }
-        if (footnotesSection) {
-            group.insertBefore(footnotesSection, ((_a = group.firstChild) === null || _a === void 0 ? void 0 : _a.nextSibling) || group.firstChild);
-        }
-    },
-    moveCaptionsToEnd(body) {
-        const captions = body.querySelectorAll('caption');
-        for (const caption of captions) {
-            if (caption.parentNode &&
-                caption.parentNode.nodeName !== 'table-wrap' &&
-                caption.parentNode.nodeName !== 'boxed-text') {
-                caption.parentNode.appendChild(caption);
-            }
-        }
-    },
-    fixTables(body, createElement) {
-        const tableWraps = body.querySelectorAll('table-wrap');
-        tableWraps.forEach((tableWrap) => {
-            const table = tableWrap.querySelector('table');
-            if (!table) {
-                return;
-            }
-            const colgroup = table.querySelector('colgroup');
-            const cols = table.querySelectorAll('col');
-            if (!colgroup && table.firstChild && cols.length > 0) {
-                const colgroup = createElement('colgroup');
-                for (const col of cols) {
-                    colgroup.appendChild(col);
-                }
-                tableWrap.insertBefore(colgroup, table.nextSibling);
-            }
-            const tableFootWrap = tableWrap.querySelector('table-wrap-foot');
-            if (tableFootWrap) {
-                const paragraphs = tableFootWrap.querySelectorAll(':scope > p');
-                if (paragraphs.length) {
-                    const generalTableFootnote = createElement('general-table-footnote');
-                    for (const paragraph of paragraphs) {
-                        removeNodeFromParent(paragraph);
-                        generalTableFootnote.append(paragraph);
-                    }
-                    tableFootWrap.prepend(generalTableFootnote);
-                }
-            }
-        });
-    },
-    orderTableFootnote(doc, body) {
-        const tableInlineFootnotesIds = new Set(Array.from(body.querySelectorAll('tbody > tr > td > xref[ref-type="fn"]').values()).map((inlineFootnote) => inlineFootnote.getAttribute('rid')));
-        const fnGroups = doc.querySelectorAll('table-wrap-foot > fn-group');
-        fnGroups.forEach((fnGroup) => {
-            const orderedFootnotes = Array.from(fnGroup.querySelectorAll('fn')).sort((fn) => tableInlineFootnotesIds.has(fn.getAttribute('id'))
-                ? -1
-                : 0);
-            fnGroup.replaceChildren(...orderedFootnotes);
-        });
-    },
-    moveFloatsGroupToBody(doc, body, createElement) {
-        const group = doc.querySelector('floats-group');
-        if (group) {
-            const sec = this.createFloatsGroupSection(group, createElement);
-            removeNodeFromParent(group);
-            body.appendChild(sec);
-        }
-    },
-    createKeywords(document, body, createElement) {
-        const keywordGroups = [...document.querySelectorAll('kwd-group')];
-        if (keywordGroups.length > 0) {
-            const section = createElement('sec');
-            section.setAttribute('sec-type', 'keywords');
-            const title = createElement('title');
-            title.textContent = 'Keywords';
-            section.append(title);
-            const keywordsElement = createElement('kwd-group-list');
-            keywordsElement.append(keywordGroups[0]);
-            section.append(keywordsElement);
-            body.prepend(section);
-        }
-    },
-    createSuppleMaterials(document, body, createElement) {
-        const suppleMaterials = [
-            ...document.querySelectorAll('article-meta > supplementary-material'),
-        ];
-        if (suppleMaterials.length > 0) {
-            const section = createElement('sec');
-            section.setAttribute('sec-type', 'supplementary-material');
-            const title = createElement('title');
-            title.textContent = 'supplementary-material';
-            section.append(title);
-            section.append(...suppleMaterials);
-            body.prepend(section);
-        }
-    },
-};

package/dist/es/jats/importer/jats-body-transformations.js

@@ -1,323 +0,0 @@
-/*!
- * © 2020 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-import { abstractsType, backmatterType, bodyType, } from '../../lib/section-group-type';
-import { chooseSectionCategoryByType, chooseSecType } from '../../transformer';
-const removeNodeFromParent = (node) => node.parentNode && node.parentNode.removeChild(node);
-const capitalizeFirstLetter = (str) => str.charAt(0).toUpperCase() + str.slice(1);
-const createSectionGroup = (type, createElement) => {
-    const sec = createElement('sec');
-    sec.setAttribute('sec-type', type._id);
-    const title = createElement('title');
-    title.textContent = type.title;
-    sec.appendChild(title);
-    return sec;
-};
-export const jatsBodyTransformations = {
-    ensureSection(body, createElement) {
-        let section;
-        const element = body.firstElementChild;
-        if (element && element.tagName === 'sec') {
-            section = element;
-        }
-        else {
-            section = createElement('sec');
-            body.insertBefore(section, body.firstChild);
-        }
-        body.childNodes.forEach((child) => {
-            if (child.nodeType === Node.ELEMENT_NODE) {
-                const element = child;
-                if (element.tagName !== 'sec') {
-                    section.appendChild(element);
-                }
-                else {
-                    section = element;
-                }
-            }
-        });
-    },
-    createAbstractSection(abstractNode, createElement) {
-        const abstractType = abstractNode.getAttribute('abstract-type');
-        const section = createElement('sec');
-        const sectionType = abstractType ? `abstract-${abstractType}` : 'abstract';
-        section.setAttribute('sec-type', sectionType);
-        if (!abstractNode.querySelector('abstract > title')) {
-            const title = createElement('title');
-            title.textContent = abstractType
-                ? `${capitalizeFirstLetter(abstractType)} Abstract`
-                : 'Abstract';
-            section.appendChild(title);
-        }
-        while (abstractNode.firstChild) {
-            section.appendChild(abstractNode.firstChild);
-        }
-        return section;
-    },
-    createAcknowledgmentsSection(ackNode, createElement) {
-        const section = createElement('sec');
-        section.setAttribute('sec-type', 'acknowledgments');
-        const titleNode = ackNode.querySelector('title');
-        if (titleNode) {
-            section.appendChild(titleNode);
-        }
-        else {
-            const title = createElement('title');
-            title.textContent = 'Acknowledgements';
-            section.appendChild(title);
-        }
-        while (ackNode.firstChild) {
-            section.appendChild(ackNode.firstChild);
-        }
-        return section;
-    },
-    createFootnotesSection(footnoteGroups, createElement) {
-        const section = createElement('sec');
-        section.setAttribute('sec-type', 'endnotes');
-        const titleNode = footnoteGroups
-            .map((g) => g.querySelector('title'))
-            .filter((t) => t !== null)[0];
-        if (titleNode) {
-            section.appendChild(titleNode);
-        }
-        else {
-            const title = createElement('title');
-            title.textContent = 'Footnotes';
-            section.appendChild(title);
-        }
-        for (const footnoteGroup of footnoteGroups) {
-            section.appendChild(footnoteGroup);
-        }
-        return section;
-    },
-    createAppendixSection(app, createElement) {
-        const section = createElement('sec');
-        section.setAttribute('sec-type', 'appendices');
-        section.append(...app.children);
-        return section;
-    },
-    createFloatsGroupSection(group, createElement) {
-        const section = createElement('sec');
-        section.setAttribute('sec-type', 'floating-element');
-        const title = createElement('title');
-        title.textContent = 'Floating Group';
-        section.appendChild(title);
-        section.append(...group.children);
-        return section;
-    },
-    moveAbstracts(doc, group, createElement) {
-        const abstracts = doc.querySelectorAll('front > article-meta > abstract');
-        abstracts.forEach((abstract) => {
-            const sec = this.createAbstractSection(abstract, createElement);
-            removeNodeFromParent(abstract);
-            group.appendChild(sec);
-        });
-    },
-    wrapBodySections(doc, group) {
-        const bodySections = doc.querySelectorAll('body > sec:not([sec-type="backmatter"]), body > sec:not([sec-type])');
-        bodySections.forEach((section) => {
-            removeNodeFromParent(section);
-            group.appendChild(section);
-        });
-    },
-    moveBackSections(doc, group) {
-        for (const section of doc.querySelectorAll('back > sec')) {
-            removeNodeFromParent(section);
-            group.appendChild(section);
-        }
-    },
-    moveAcknowledgments(doc, group, createElement) {
-        const ack = doc.querySelector('back > ack');
-        if (ack) {
-            const sec = this.createAcknowledgmentsSection(ack, createElement);
-            removeNodeFromParent(ack);
-            group.appendChild(sec);
-        }
-    },
-    moveAppendices(doc, group, createElement) {
-        const apps = doc.querySelectorAll('back > app-group > app');
-        for (const app of apps) {
-            const sec = this.createAppendixSection(app, createElement);
-            removeNodeFromParent(app);
-            group.appendChild(sec);
-        }
-    },
-    createBoxedElementSection(doc, body, createElement) {
-        const boxedTexts = body.querySelectorAll('boxed-text');
-        for (const boxedText of boxedTexts) {
-            const boxElementSec = createElement('sec');
-            boxElementSec.setAttribute('sec-type', 'box-element');
-            const title = createElement('title');
-            title.textContent = 'BoxElement';
-            boxElementSec.append(title);
-            for (const element of [...boxedText.children]) {
-                if ((element === null || element === void 0 ? void 0 : element.tagName) === 'label' || (element === null || element === void 0 ? void 0 : element.tagName) === 'caption') {
-                    boxElementSec.append(element);
-                }
-            }
-            const containerSection = createElement('sec');
-            containerSection.append(...boxedText.children);
-            boxElementSec.append(containerSection);
-            boxedText.replaceWith(boxElementSec);
-        }
-    },
-    createBody(doc, body, createElement) {
-        const group = createSectionGroup(bodyType, createElement);
-        this.wrapBodySections(doc, group);
-        this.moveFloatsGroupToBody(doc, group, createElement);
-        body.append(group);
-    },
-    createAbstracts(doc, body, createElement) {
-        const group = createSectionGroup(abstractsType, createElement);
-        this.moveAbstracts(doc, group, createElement);
-        body.insertBefore(group, body.lastElementChild);
-    },
-    createBackmatter(doc, body, createElement) {
-        const group = createSectionGroup(backmatterType, createElement);
-        this.moveBackSections(doc, group);
-        this.moveAppendices(doc, group, createElement);
-        this.moveSpecialFootnotes(doc, group, createElement);
-        this.moveFootnotes(doc, group, createElement);
-        this.moveAcknowledgments(doc, group, createElement);
-        body.append(group);
-    },
-    moveSpecialFootnotes(doc, group, createElement) {
-        var _a;
-        const fns = [...doc.querySelectorAll('fn[fn-type]')];
-        for (const fn of fns) {
-            const type = fn.getAttribute('fn-type') || '';
-            const category = chooseSectionCategoryByType(type);
-            if (category) {
-                const section = createElement('sec');
-                const title = fn.querySelector('p[content-type="fn-title"]');
-                if (title) {
-                    const sectionTitleElement = createElement('title');
-                    const titleTextContent = (_a = title.textContent) === null || _a === void 0 ? void 0 : _a.trim();
-                    if (titleTextContent) {
-                        sectionTitleElement.textContent = titleTextContent;
-                    }
-                    removeNodeFromParent(title);
-                    section.append(sectionTitleElement);
-                }
-                section.append(...fn.children);
-                removeNodeFromParent(fn);
-                section.setAttribute('sec-type', chooseSecType(category));
-                group.append(section);
-            }
-        }
-    },
-    moveFootnotes(doc, group, createElement) {
-        var _a;
-        const footnotes = Array.from(doc.querySelectorAll('fn:not(table-wrap-foot fn, author-notes fn)'));
-        let footnotesSection = doc.querySelector('sec[sec-type="endnotes"]');
-        const containingGroup = (footnotesSection === null || footnotesSection === void 0 ? void 0 : footnotesSection.querySelector('fn-group')) || createElement('fn-group');
-        footnotes.forEach((footnote) => {
-            if (!footnote.getAttribute('fn-type')) {
-                containingGroup.appendChild(footnote);
-            }
-        });
-        if (!footnotesSection && containingGroup.innerHTML) {
-            footnotesSection = this.createFootnotesSection([containingGroup], createElement);
-        }
-        if (footnotesSection) {
-            group.insertBefore(footnotesSection, ((_a = group.firstChild) === null || _a === void 0 ? void 0 : _a.nextSibling) || group.firstChild);
-        }
-    },
-    moveCaptionsToEnd(body) {
-        const captions = body.querySelectorAll('caption');
-        for (const caption of captions) {
-            if (caption.parentNode &&
-                caption.parentNode.nodeName !== 'table-wrap' &&
-                caption.parentNode.nodeName !== 'boxed-text') {
-                caption.parentNode.appendChild(caption);
-            }
-        }
-    },
-    fixTables(body, createElement) {
-        const tableWraps = body.querySelectorAll('table-wrap');
-        tableWraps.forEach((tableWrap) => {
-            const table = tableWrap.querySelector('table');
-            if (!table) {
-                return;
-            }
-            const colgroup = table.querySelector('colgroup');
-            const cols = table.querySelectorAll('col');
-            if (!colgroup && table.firstChild && cols.length > 0) {
-                const colgroup = createElement('colgroup');
-                for (const col of cols) {
-                    colgroup.appendChild(col);
-                }
-                tableWrap.insertBefore(colgroup, table.nextSibling);
-            }
-            const tableFootWrap = tableWrap.querySelector('table-wrap-foot');
-            if (tableFootWrap) {
-                const paragraphs = tableFootWrap.querySelectorAll(':scope > p');
-                if (paragraphs.length) {
-                    const generalTableFootnote = createElement('general-table-footnote');
-                    for (const paragraph of paragraphs) {
-                        removeNodeFromParent(paragraph);
-                        generalTableFootnote.append(paragraph);
-                    }
-                    tableFootWrap.prepend(generalTableFootnote);
-                }
-            }
-        });
-    },
-    orderTableFootnote(doc, body) {
-        const tableInlineFootnotesIds = new Set(Array.from(body.querySelectorAll('tbody > tr > td > xref[ref-type="fn"]').values()).map((inlineFootnote) => inlineFootnote.getAttribute('rid')));
-        const fnGroups = doc.querySelectorAll('table-wrap-foot > fn-group');
-        fnGroups.forEach((fnGroup) => {
-            const orderedFootnotes = Array.from(fnGroup.querySelectorAll('fn')).sort((fn) => tableInlineFootnotesIds.has(fn.getAttribute('id'))
-                ? -1
-                : 0);
-            fnGroup.replaceChildren(...orderedFootnotes);
-        });
-    },
-    moveFloatsGroupToBody(doc, body, createElement) {
-        const group = doc.querySelector('floats-group');
-        if (group) {
-            const sec = this.createFloatsGroupSection(group, createElement);
-            removeNodeFromParent(group);
-            body.appendChild(sec);
-        }
-    },
-    createKeywords(document, body, createElement) {
-        const keywordGroups = [...document.querySelectorAll('kwd-group')];
-        if (keywordGroups.length > 0) {
-            const section = createElement('sec');
-            section.setAttribute('sec-type', 'keywords');
-            const title = createElement('title');
-            title.textContent = 'Keywords';
-            section.append(title);
-            const keywordsElement = createElement('kwd-group-list');
-            keywordsElement.append(keywordGroups[0]);
-            section.append(keywordsElement);
-            body.prepend(section);
-        }
-    },
-    createSuppleMaterials(document, body, createElement) {
-        const suppleMaterials = [
-            ...document.querySelectorAll('article-meta > supplementary-material'),
-        ];
-        if (suppleMaterials.length > 0) {
-            const section = createElement('sec');
-            section.setAttribute('sec-type', 'supplementary-material');
-            const title = createElement('title');
-            title.textContent = 'supplementary-material';
-            section.append(title);
-            section.append(...suppleMaterials);
-            body.prepend(section);
-        }
-    },
-};

package/dist/types/jats/importer/jats-body-transformations.d.ts

@@ -1,40 +0,0 @@
-/*!
- * © 2020 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-export declare const jatsBodyTransformations: {
-    ensureSection(body: Element, createElement: (tagName: string) => HTMLElement): void;
-    createAbstractSection(abstractNode: Element, createElement: (tagName: string) => HTMLElement): HTMLElement;
-    createAcknowledgmentsSection(ackNode: Element, createElement: (tagName: string) => HTMLElement): HTMLElement;
-    createFootnotesSection(footnoteGroups: Element[], createElement: (tagName: string) => HTMLElement): HTMLElement;
-    createAppendixSection(app: Element, createElement: (tagName: string) => HTMLElement): HTMLElement;
-    createFloatsGroupSection(group: Element, createElement: (tagName: string) => HTMLElement): HTMLElement;
-    moveAbstracts(doc: Document, group: Element, createElement: (tagName: string) => HTMLElement): void;
-    wrapBodySections(doc: Document, group: Element): void;
-    moveBackSections(doc: Document, group: Element): void;
-    moveAcknowledgments(doc: Document, group: Element, createElement: (tagName: string) => HTMLElement): void;
-    moveAppendices(doc: Document, group: Element, createElement: (tagName: string) => HTMLElement): void;
-    createBoxedElementSection(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
-    createBody(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
-    createAbstracts(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
-    createBackmatter(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
-    moveSpecialFootnotes(doc: Document, group: Element, createElement: (tagName: string) => HTMLElement): void;
-    moveFootnotes(doc: Document, group: Element, createElement: (tagName: string) => HTMLElement): void;
-    moveCaptionsToEnd(body: Element): void;
-    fixTables(body: Element, createElement: (tagName: string) => HTMLElement): void;
-    orderTableFootnote(doc: Document, body: Element): void;
-    moveFloatsGroupToBody(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
-    createKeywords(document: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
-    createSuppleMaterials(document: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
-};