@manuscripts/transform 3.0.4-LEAN-4011.0 → 3.0.4

package/dist/cjs/schema/nodes/figure_element.js

@@ -19,16 +19,8 @@ exports.isFigureElementNode = exports.figureElement = void 0;
 exports.figureElement = {
     content: '(paragraph | figure | missing_figure | placeholder)+ attribution* figcaption (listing | placeholder)',
     attrs: {
-        figureLayout: { default: '' },
-        figureStyle: { default: '' },
         id: { default: '' },
-        label: { default: '' },
-        sizeFraction: { default: 0 },
-        alignment: { default: undefined },
-        suppressCaption: { default: false },
-        suppressTitle: { default: undefined },
         attribution: { default: undefined },
-        alternatives: { default: undefined },
         dataTracked: { default: null },
     },
     selectable: false,
@@ -40,36 +32,17 @@ exports.figureElement = {
                 const dom = p;
                 return {
                     id: dom.getAttribute('id'),
-                    figureStyle: dom.getAttribute('data-figure-style'),
-                    figureLayout: dom.getAttribute('data-figure-layout'),
-                    sizeFraction: Number(dom.getAttribute('data-size-fraction')) || 0,
-                    alignment: dom.getAttribute('data-alignment') || undefined,
                 };
             },
         },
     ],
     toDOM: (node) => {
         const figureElementNode = node;
-        const { id, figureStyle, figureLayout, alignment, sizeFraction } = figureElementNode.attrs;
+        const { id } = figureElementNode.attrs;
         const attrs = {};
         const classes = ['figure-group'];
-        if (sizeFraction === 2) {
-            classes.push('figure-group--static');
-        }
         attrs.class = classes.join(' ');
         attrs.id = id;
-        if (figureStyle) {
-            attrs['data-figure-style'] = figureStyle;
-        }
-        if (figureLayout) {
-            attrs['data-figure-layout'] = figureLayout;
-        }
-        if (sizeFraction) {
-            attrs['data-size-fraction'] = String(sizeFraction);
-        }
-        if (alignment) {
-            attrs['data-alignment'] = alignment;
-        }
         return ['figure', attrs, 0];
     },
 };

package/dist/cjs/schema/nodes/footnote.js

@@ -22,7 +22,6 @@ exports.footnote = {
     attrs: {
         id: { default: '' },
         kind: { default: 'footnote' },
-        paragraphStyle: { default: '' },
         placeholder: { default: '' },
         dataTracked: { default: null },
     },
@@ -45,7 +44,7 @@ exports.footnote = {
     ],
     toDOM: (node) => {
         const footnoteNode = node;
-        const { kind, paragraphStyle, placeholder, id } = footnoteNode.attrs;
+        const { kind, placeholder, id } = footnoteNode.attrs;
         const attrs = { class: 'footnote-text', id: '' };
         if (kind) {
             attrs['data-kind'] = kind;
@@ -53,9 +52,6 @@ exports.footnote = {
         if (id) {
             attrs.id = id;
         }
-        if (paragraphStyle) {
-            attrs.paragraphStyle = paragraphStyle;
-        }
         if (placeholder) {
             attrs['data-placeholder-text'] = placeholder;
         }

package/dist/cjs/schema/nodes/footnotes_element.js

@@ -20,7 +20,6 @@ exports.footnotesElement = {
     attrs: {
         id: { default: '' },
         kind: { default: 'footnote' },
-        paragraphStyle: { default: '' },
         dataTracked: { default: null },
     },
     content: 'footnote*',
@@ -39,14 +38,11 @@ exports.footnotesElement = {
     ],
     toDOM: (node) => {
         const footnotesElementNode = node;
-        const { id, kind, paragraphStyle } = footnotesElementNode.attrs;
+        const { id, kind } = footnotesElementNode.attrs;
         const attrs = { class: 'footnotes', id };
         if (kind) {
             attrs['data-kind'] = kind;
         }
-        if (paragraphStyle) {
-            attrs['paragraphStyle'] = paragraphStyle;
-        }
         return ['div', attrs, 0];
     },
 };

package/dist/cjs/schema/nodes/graphical_abstract_section.js

@@ -20,7 +20,6 @@ exports.graphicalAbstractSection = {
     content: 'section_title (figure_element | placeholder)',
     attrs: {
         id: { default: '' },
-        category: { default: '' },
         dataTracked: { default: null },
     },
     group: 'block sections',

package/dist/cjs/schema/nodes/keywords_element.js

@@ -22,8 +22,6 @@ exports.keywordsElement = {
     attrs: {
         id: { default: '' },
         contents: { default: '' },
-        paragraphStyle: { default: '' },
-        type: { default: '' },
         dataTracked: { default: null },
     },
     group: 'block element',

package/dist/cjs/schema/nodes/list.js

@@ -2,7 +2,6 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isListNode = exports.listItem = exports.list = exports.getListType = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
-const attributes_1 = require("../../lib/attributes");
 const getListType = (style) => {
     switch (style) {
         case 'simple':
@@ -29,7 +28,6 @@ exports.list = {
     group: 'block list element',
     attrs: {
         id: { default: '' },
-        paragraphStyle: { default: '' },
         dataTracked: { default: null },
         listStyleType: { default: null },
     },
@@ -63,7 +61,6 @@ exports.list = {
             {
                 id: list.attrs.id,
                 'list-type': list.attrs.listStyleType,
-                class: (0, attributes_1.buildElementClass)(list.attrs),
                 'data-object-type': json_schema_1.ObjectTypes.ListElement,
             },
             0,

package/dist/cjs/schema/nodes/listing_element.js

@@ -20,8 +20,6 @@ exports.listingElement = {
     content: '(listing | placeholder) figcaption',
     attrs: {
         id: { default: '' },
-        suppressCaption: { default: true },
-        suppressTitle: { default: undefined },
         dataTracked: { default: null },
     },
     group: 'block element',

package/dist/cjs/schema/nodes/manuscript.js

@@ -24,12 +24,6 @@ exports.manuscript = {
         prototype: { default: '' },
         primaryLanguageCode: { default: '' },
         articleType: { default: '' },
-        acceptanceDate: { default: undefined },
-        correctionDate: { default: undefined },
-        retractionDate: { default: undefined },
-        revisionRequestDate: { default: undefined },
-        revisionReceiveDate: { default: undefined },
-        receiveDate: { default: undefined },
     },
     group: 'block',
     parseDOM: [

package/dist/cjs/schema/nodes/missing_figure.js

@@ -19,7 +19,6 @@ exports.missingFigure = void 0;
 exports.missingFigure = {
     attrs: {
         id: { default: '' },
-        position: { default: undefined },
         dataTracked: { default: null },
     },
     selectable: false,

package/dist/cjs/schema/nodes/paragraph.js

@@ -17,12 +17,10 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isParagraphNode = exports.paragraph = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
-const attributes_1 = require("../../lib/attributes");
 exports.paragraph = {
     content: 'inline*',
     attrs: {
         id: { default: '' },
-        paragraphStyle: { default: '' },
         placeholder: { default: '' },
         dataTracked: { default: null },
     },
@@ -50,7 +48,6 @@ exports.paragraph = {
         if (paragraphNode.attrs.id) {
             attrs.id = paragraphNode.attrs.id;
         }
-        attrs.class = (0, attributes_1.buildElementClass)(paragraphNode.attrs);
         attrs['data-object-type'] = json_schema_1.ObjectTypes.ParagraphElement;
         if (paragraphNode.attrs.placeholder) {
             attrs['data-placeholder-text'] = paragraphNode.attrs.placeholder;

package/dist/cjs/schema/nodes/pullquote_element.js

@@ -17,12 +17,10 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isPullquoteElement = exports.pullquoteElement = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
-const attributes_1 = require("../../lib/attributes");
 exports.pullquoteElement = {
     content: 'paragraph+ attribution',
     attrs: {
         id: { default: '' },
-        paragraphStyle: { default: '' },
         placeholder: { default: '' },
         dataTracked: { default: null },
     },
@@ -50,10 +48,7 @@ exports.pullquoteElement = {
         if (pullquoteElementNode.attrs.id) {
             attrs.id = pullquoteElementNode.attrs.id;
         }
-        attrs.class = [
-            'pullquote',
-            (0, attributes_1.buildElementClass)(pullquoteElementNode.attrs),
-        ].join(' ');
+        attrs.class = 'pullquote';
         attrs['data-object-type'] = json_schema_1.ObjectTypes.QuoteElement;
         if (pullquoteElementNode.attrs.placeholder) {
             attrs['data-placeholder-text'] = pullquoteElementNode.attrs.placeholder;

package/dist/cjs/schema/nodes/section.js

@@ -15,33 +15,12 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isSectionNode = exports.section = exports.PAGE_BREAK_BEFORE_AND_AFTER = exports.PAGE_BREAK_AFTER = exports.PAGE_BREAK_BEFORE = exports.PAGE_BREAK_NONE = void 0;
-exports.PAGE_BREAK_NONE = 0;
-exports.PAGE_BREAK_BEFORE = 1;
-exports.PAGE_BREAK_AFTER = 2;
-exports.PAGE_BREAK_BEFORE_AND_AFTER = 4;
-const choosePageBreakStyle = (element) => {
-    const pageBreakAfter = element.classList.contains('page-break-after');
-    const pageBreakBefore = element.classList.contains('page-break-before');
-    if (pageBreakBefore && pageBreakAfter) {
-        return exports.PAGE_BREAK_BEFORE_AND_AFTER;
-    }
-    if (pageBreakBefore) {
-        return exports.PAGE_BREAK_BEFORE;
-    }
-    if (pageBreakAfter) {
-        return exports.PAGE_BREAK_AFTER;
-    }
-    return exports.PAGE_BREAK_NONE;
-};
+exports.isSectionNode = exports.section = void 0;
 exports.section = {
     content: 'section_label? section_title (paragraph | element)* sections*',
     attrs: {
         id: { default: '' },
         category: { default: '' },
-        titleSuppressed: { default: false },
-        generatedLabel: { default: undefined },
-        pageBreakStyle: { default: undefined },
         dataTracked: { default: null },
     },
     group: 'block sections',
@@ -54,35 +33,14 @@ exports.section = {
                 return {
                     id: element.getAttribute('id') || '',
                     category: element.getAttribute('data-category') || '',
-                    titleSuppressed: element.classList.contains('title-suppressed'),
-                    generatedLabel: element.classList.contains('generated-label'),
-                    pageBreakStyle: choosePageBreakStyle(element) || undefined,
                 };
             },
         },
     ],
     toDOM: (node) => {
         const sectionNode = node;
-        const { id, category, titleSuppressed, generatedLabel, pageBreakStyle } = sectionNode.attrs;
-        const classnames = [];
-        if (titleSuppressed) {
-            classnames.push('title-suppressed');
-        }
-        if (typeof generatedLabel === 'undefined' || generatedLabel) {
-            classnames.push('generated-label');
-        }
-        if (pageBreakStyle === exports.PAGE_BREAK_BEFORE ||
-            pageBreakStyle === exports.PAGE_BREAK_BEFORE_AND_AFTER) {
-            classnames.push('page-break-before');
-        }
-        if (pageBreakStyle === exports.PAGE_BREAK_AFTER ||
-            pageBreakStyle === exports.PAGE_BREAK_BEFORE_AND_AFTER) {
-            classnames.push('page-break-after');
-        }
+        const { id, category } = sectionNode.attrs;
         const attrs = { id };
-        if (classnames.length) {
-            attrs['class'] = classnames.join(' ');
-        }
         if (category) {
             attrs['data-category'] = node.attrs.category;
         }

package/dist/cjs/schema/nodes/table_element.js

@@ -20,14 +20,7 @@ exports.tableElement = {
     content: ' figcaption? (table | placeholder) table_colgroup? table_element_footer? (listing | placeholder)',
     attrs: {
         id: { default: '' },
-        paragraphStyle: { default: '' },
-        tableStyle: { default: '' },
         label: { default: '' },
-        suppressCaption: { default: false },
-        suppressTitle: { default: undefined },
-        suppressFooter: { default: false },
-        suppressHeader: { default: false },
-        expandListing: { default: false },
         dataTracked: { default: null },
     },
     selectable: false,
@@ -39,8 +32,6 @@ exports.tableElement = {
                 const element = dom;
                 return {
                     id: element.getAttribute('id'),
-                    paragraphStyle: element.getAttribute('data-paragraph-style') || '',
-                    tableStyle: element.getAttribute('data-table-style') || '',
                 };
             },
         },
@@ -52,8 +43,6 @@ exports.tableElement = {
             {
                 class: 'table',
                 id: tableElementNode.attrs.id,
-                'data-paragraph-style': tableElementNode.attrs.paragraphStyle,
-                'data-table-style': tableElementNode.attrs.tableStyle,
             },
             0,
         ];

package/dist/cjs/schema/nodes/toc_element.js

@@ -28,7 +28,6 @@ exports.tocElement = {
     attrs: {
         id: { default: '' },
         contents: { default: '' },
-        paragraphStyle: { default: '' },
         dataTracked: { default: null },
     },
     group: 'block element',

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.VERSION = void 0;
-exports.VERSION = "3.0.4-LEAN-4011.0";
+exports.VERSION = "3.0.4";

package/dist/es/jats/exporter/jats-exporter.js

@@ -283,35 +283,6 @@ export class JATSExporter {
                 supplementaryMaterial.append(caption);
                 articleMeta.append(supplementaryMaterial);
             });
-            const history = articleMeta.querySelector('history') ||
-                this.document.createElement('history');
-            if (this.manuscriptNode.attrs.acceptanceDate) {
-                const date = this.buildDateElement(this.manuscriptNode.attrs.acceptanceDate, 'accepted');
-                history.appendChild(date);
-            }
-            if (this.manuscriptNode.attrs.correctionDate) {
-                const date = this.buildDateElement(this.manuscriptNode.attrs.correctionDate, 'corrected');
-                history.appendChild(date);
-            }
-            if (this.manuscriptNode.attrs.retractionDate) {
-                const date = this.buildDateElement(this.manuscriptNode.attrs.retractionDate, 'retracted');
-                history.appendChild(date);
-            }
-            if (this.manuscriptNode.attrs.receiveDate) {
-                const date = this.buildDateElement(this.manuscriptNode.attrs.receiveDate, 'received');
-                history.appendChild(date);
-            }
-            if (this.manuscriptNode.attrs.revisionReceiveDate) {
-                const date = this.buildDateElement(this.manuscriptNode.attrs.revisionReceiveDate, 'rev-recd');
-                history.appendChild(date);
-            }
-            if (this.manuscriptNode.attrs.revisionRequestDate) {
-                const date = this.buildDateElement(this.manuscriptNode.attrs.revisionRequestDate, 'rev-request');
-                history.appendChild(date);
-            }
-            if (history.childElementCount) {
-                articleMeta.appendChild(history);
-            }
             this.buildKeywords(articleMeta);
             let countingElements = [];
             const figureCount = findChildrenByType(this.manuscriptNode, schema.nodes.figure).length;
@@ -602,17 +573,18 @@ export class JATSExporter {
                     return xref;
                 },
                 cross_reference: (node) => {
-                    var _a;
+                    var _a, _b, _c;
                     const cross = node;
                     const rids = cross.attrs.rids;
                     if (!rids.length) {
-                        return cross.attrs.label;
+                        return (_a = cross.attrs.label) !== null && _a !== void 0 ? _a : '';
                     }
-                    const text = cross.attrs.customLabel || cross.attrs.label;
-                    const target = (_a = findChildrenByAttr(this.manuscriptNode, (attrs) => attrs.id === rids[0])[0]) === null || _a === void 0 ? void 0 : _a.node;
+                    const rid = rids[0];
+                    const text = cross.attrs.label || ((_b = this.labelTargets.get(rid)) === null || _b === void 0 ? void 0 : _b.label);
+                    const target = (_c = findChildrenByAttr(this.manuscriptNode, (attrs) => attrs.id === rid)[0]) === null || _c === void 0 ? void 0 : _c.node;
                     if (!target) {
                         warn('');
-                        return text;
+                        return text || '';
                     }
                     const xref = this.document.createElement('xref');
                     const type = chooseRefType(target.type);
@@ -623,7 +595,7 @@ export class JATSExporter {
                         warn(`Unset ref-type for schema type ${target.type.name}`);
                     }
                     xref.setAttribute('rid', normalizeID(rids.join(' ')));
-                    xref.textContent = text;
+                    xref.textContent = text !== null && text !== void 0 ? text : '';
                     return xref;
                 },
                 doc: () => '',
@@ -1211,22 +1183,6 @@ export class JATSExporter {
         this.fixBody = (body) => {
             this.manuscriptNode.descendants((node) => {
                 if (node.attrs.id) {
-                    if (node.attrs.titleSuppressed) {
-                        const title = body.querySelector(`#${normalizeID(node.attrs.id)} > title`);
-                        if (title && title.parentNode) {
-                            title.parentNode.removeChild(title);
-                        }
-                    }
-                    if (node.attrs.suppressCaption) {
-                        const caption = body.querySelector(`#${normalizeID(node.attrs.id)} > caption`);
-                        if (caption) {
-                            caption.remove();
-                        }
-                        const label = body.querySelector(`#${normalizeID(node.attrs.id)} > label`);
-                        if (label) {
-                            label.remove();
-                        }
-                    }
                     if (isNodeType(node, 'general_table_footnote')) {
                         const generalTableFootnote = body.querySelector(`#${normalizeID(node.attrs.id)}`);
                         if (generalTableFootnote) {
@@ -1242,13 +1198,8 @@ export class JATSExporter {
                             for (const childNode of tableElement.childNodes) {
                                 switch (childNode.nodeName) {
                                     case 'caption': {
-                                        if (node.attrs.suppressCaption) {
-                                            tableElement.removeChild(childNode);
-                                        }
-                                        else {
-                                            const label = tableElement.querySelector('label');
-                                            tableElement.insertBefore(childNode, label ? label.nextSibling : tableElement.firstChild);
-                                        }
+                                        const label = tableElement.querySelector('label');
+                                        tableElement.insertBefore(childNode, label ? label.nextSibling : tableElement.firstChild);
                                         break;
                                     }
                                     case 'table': {
@@ -1292,19 +1243,15 @@ export class JATSExporter {
                     const headerCell = row.querySelector('th[scope="col"], th[scope="colgroup"]');
                     if (i === 0 || headerCell) {
                         tbody === null || tbody === void 0 ? void 0 : tbody.removeChild(row);
-                        if (!node.attrs.suppressHeader) {
-                            const tableCells = row.querySelectorAll('td');
-                            for (const td of tableCells) {
-                                this.changeTag(td, 'th');
-                            }
-                            thead.appendChild(row);
+                        const tableCells = row.querySelectorAll('td');
+                        for (const td of tableCells) {
+                            this.changeTag(td, 'th');
                         }
+                        thead.appendChild(row);
                     }
                     else if (i === tbodyRows.length - 1) {
                         tbody === null || tbody === void 0 ? void 0 : tbody.removeChild(row);
-                        if (!node.attrs.suppressFooter) {
-                            tfoot.appendChild(row);
-                        }
+                        tfoot.appendChild(row);
                     }
                 }
             });