@manuscripts/transform 3.0.21 → 3.0.22

package/dist/cjs/jats/exporter/jats-exporter.js

@@ -543,6 +543,22 @@ class JATSExporter {
         };
         this.createSerializer = () => {
             const nodes = {
+                embed: (node) => {
+                    const mediaElement = this.document.createElement('media');
+                    const { id, href, mimetype, mimeSubtype } = node.attrs;
+                    mediaElement.setAttribute('id', normalizeID(id));
+                    mediaElement.setAttributeNS(XLINK_NAMESPACE, 'show', 'embed');
+                    if (href) {
+                        mediaElement.setAttributeNS(XLINK_NAMESPACE, 'href', node.attrs.href);
+                    }
+                    if (mimetype) {
+                        mediaElement.setAttribute('mimetype', node.attrs.mimetype);
+                    }
+                    if (mimeSubtype) {
+                        mediaElement.setAttribute('mime-subtype', node.attrs.mimeSubtype);
+                    }
+                    return mediaElement;
+                },
                 awards: () => ['funding-group', 0],
                 award: (node) => {
                     const awardGroup = node;

package/dist/cjs/jats/importer/jats-dom-parser.js

@@ -560,6 +560,19 @@ class JATSDOMParser {
                     };
                 },
             },
+            {
+                tag: 'media',
+                node: 'embed',
+                getAttrs: (node) => {
+                    const element = node;
+                    return {
+                        id: element.getAttribute('id'),
+                        href: element.getAttributeNS(this.XLINK_NAMESPACE, 'href'),
+                        mimetype: element.getAttribute('mimetype'),
+                        mimeSubtype: element.getAttribute('mime-subtype'),
+                    };
+                },
+            },
             {
                 tag: 'fig[fig-type=listing]',
                 node: 'listing_element',

package/dist/cjs/jats/importer/jats-transformations.js

@@ -111,12 +111,10 @@ const createBoxedElementSection = (body, createElement) => {
 exports.createBoxedElementSection = createBoxedElementSection;
 const createBody = (doc, body, createElement) => {
     const group = createSectionGroup('body', createElement);
-    const paragraphs = doc.querySelectorAll('body > p');
-    group.append(...paragraphs);
-    const sections = doc.querySelectorAll('body > sec:not([sec-type="backmatter"]), body > sec:not([sec-type])');
-    sections.forEach((section) => {
-        removeNodeFromParent(section);
-        group.appendChild(section);
+    const elements = body.querySelectorAll(':scope > *:not(sec), :scope > sec:not([sec-type="backmatter"]), :scope > sec:not([sec-type])');
+    elements.forEach((element) => {
+        removeNodeFromParent(element);
+        group.appendChild(element);
     });
     moveFloatsGroupToBody(doc, group, createElement);
     body.append(group);

package/dist/cjs/schema/index.js

@@ -56,6 +56,7 @@ const contributors_1 = require("./nodes/contributors");
 const corresp_1 = require("./nodes/corresp");
 const cross_reference_1 = require("./nodes/cross_reference");
 const doc_1 = require("./nodes/doc");
+const embed_1 = require("./nodes/embed");
 const equation_1 = require("./nodes/equation");
 const equation_element_1 = require("./nodes/equation_element");
 const figcaption_1 = require("./nodes/figcaption");
@@ -96,18 +97,23 @@ const table_element_footer_1 = require("./nodes/table_element_footer");
 const text_1 = require("./nodes/text");
 const title_1 = require("./nodes/title");
 __exportStar(require("./groups"), exports);
-__exportStar(require("./types"), exports);
-__exportStar(require("./nodes/comment"), exports);
-__exportStar(require("./nodes/comments"), exports);
+__exportStar(require("./nodes/affiliation"), exports);
+__exportStar(require("./nodes/affiliations"), exports);
 __exportStar(require("./nodes/attribution"), exports);
-__exportStar(require("./nodes/bibliography_item"), exports);
+__exportStar(require("./nodes/author_notes"), exports);
 __exportStar(require("./nodes/bibliography_element"), exports);
+__exportStar(require("./nodes/bibliography_item"), exports);
 __exportStar(require("./nodes/bibliography_section"), exports);
 __exportStar(require("./nodes/blockquote_element"), exports);
 __exportStar(require("./nodes/box_element"), exports);
 __exportStar(require("./nodes/caption"), exports);
 __exportStar(require("./nodes/caption_title"), exports);
 __exportStar(require("./nodes/citation"), exports);
+__exportStar(require("./nodes/comment"), exports);
+__exportStar(require("./nodes/comments"), exports);
+__exportStar(require("./nodes/contributor"), exports);
+__exportStar(require("./nodes/contributors"), exports);
+__exportStar(require("./nodes/corresp"), exports);
 __exportStar(require("./nodes/cross_reference"), exports);
 __exportStar(require("./nodes/doc"), exports);
 __exportStar(require("./nodes/equation"), exports);
@@ -115,19 +121,19 @@ __exportStar(require("./nodes/equation_element"), exports);
 __exportStar(require("./nodes/figcaption"), exports);
 __exportStar(require("./nodes/figure"), exports);
 __exportStar(require("./nodes/figure_element"), exports);
-__exportStar(require("./nodes/general_table_footnote"), exports);
 __exportStar(require("./nodes/footnote"), exports);
 __exportStar(require("./nodes/footnotes_element"), exports);
 __exportStar(require("./nodes/footnotes_section"), exports);
+__exportStar(require("./nodes/general_table_footnote"), exports);
 __exportStar(require("./nodes/graphical_abstract_section"), exports);
 __exportStar(require("./nodes/hard_break"), exports);
 __exportStar(require("./nodes/highlight_marker"), exports);
 __exportStar(require("./nodes/inline_equation"), exports);
 __exportStar(require("./nodes/inline_footnote"), exports);
-__exportStar(require("./nodes/keyword_group"), exports);
 __exportStar(require("./nodes/keyword"), exports);
-__exportStar(require("./nodes/keywords_element"), exports);
+__exportStar(require("./nodes/keyword_group"), exports);
 __exportStar(require("./nodes/keywords"), exports);
+__exportStar(require("./nodes/keywords_element"), exports);
 __exportStar(require("./nodes/link"), exports);
 __exportStar(require("./nodes/list"), exports);
 __exportStar(require("./nodes/listing"), exports);
@@ -140,20 +146,16 @@ __exportStar(require("./nodes/placeholder_element"), exports);
 __exportStar(require("./nodes/pullquote_element"), exports);
 __exportStar(require("./nodes/section"), exports);
 __exportStar(require("./nodes/section_title"), exports);
+__exportStar(require("./nodes/supplement"), exports);
+__exportStar(require("./nodes/supplements"), exports);
 __exportStar(require("./nodes/table"), exports);
 __exportStar(require("./nodes/table_col"), exports);
 __exportStar(require("./nodes/table_element"), exports);
-__exportStar(require("./nodes/text"), exports);
-__exportStar(require("./nodes/affiliation"), exports);
-__exportStar(require("./nodes/contributor"), exports);
 __exportStar(require("./nodes/table_element_footer"), exports);
+__exportStar(require("./nodes/text"), exports);
 __exportStar(require("./nodes/title"), exports);
-__exportStar(require("./nodes/affiliations"), exports);
-__exportStar(require("./nodes/contributors"), exports);
-__exportStar(require("./nodes/supplement"), exports);
-__exportStar(require("./nodes/supplements"), exports);
-__exportStar(require("./nodes/corresp"), exports);
-__exportStar(require("./nodes/author_notes"), exports);
+__exportStar(require("./types"), exports);
+__exportStar(require("./nodes/embed"), exports);
 exports.schema = new prosemirror_model_1.Schema({
     marks: {
         bold: marks_1.bold,
@@ -238,5 +240,6 @@ exports.schema = new prosemirror_model_1.Schema({
         box_element: box_element_1.box_element,
         awards: awards_1.awards,
         award: award_1.award,
+        embed: embed_1.embed,
     },
 });

package/dist/cjs/schema/nodes/embed.js

@@ -0,0 +1,39 @@
+"use strict";
+/*!
+ * © 2024 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.isEmbedNode = exports.embed = void 0;
+exports.embed = {
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+        href: { default: undefined },
+        mimetype: { default: undefined },
+        mimeSubtype: { default: undefined },
+    },
+    group: 'block element',
+    toDOM: (node) => {
+        return [
+            'div',
+            {
+                class: 'embed',
+                id: node.attrs.id,
+            },
+        ];
+    },
+};
+const isEmbedNode = (node) => node.type === node.type.schema.nodes.embed;
+exports.isEmbedNode = isEmbedNode;

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.VERSION = void 0;
-exports.VERSION = "3.0.21";
+exports.VERSION = "3.0.22";

package/dist/es/jats/exporter/jats-exporter.js

@@ -535,6 +535,22 @@ export class JATSExporter {
         };
         this.createSerializer = () => {
             const nodes = {
+                embed: (node) => {
+                    const mediaElement = this.document.createElement('media');
+                    const { id, href, mimetype, mimeSubtype } = node.attrs;
+                    mediaElement.setAttribute('id', normalizeID(id));
+                    mediaElement.setAttributeNS(XLINK_NAMESPACE, 'show', 'embed');
+                    if (href) {
+                        mediaElement.setAttributeNS(XLINK_NAMESPACE, 'href', node.attrs.href);
+                    }
+                    if (mimetype) {
+                        mediaElement.setAttribute('mimetype', node.attrs.mimetype);
+                    }
+                    if (mimeSubtype) {
+                        mediaElement.setAttribute('mime-subtype', node.attrs.mimeSubtype);
+                    }
+                    return mediaElement;
+                },
                 awards: () => ['funding-group', 0],
                 award: (node) => {
                     const awardGroup = node;

package/dist/es/jats/importer/jats-dom-parser.js

@@ -554,6 +554,19 @@ export class JATSDOMParser {
                     };
                 },
             },
+            {
+                tag: 'media',
+                node: 'embed',
+                getAttrs: (node) => {
+                    const element = node;
+                    return {
+                        id: element.getAttribute('id'),
+                        href: element.getAttributeNS(this.XLINK_NAMESPACE, 'href'),
+                        mimetype: element.getAttribute('mimetype'),
+                        mimeSubtype: element.getAttribute('mime-subtype'),
+                    };
+                },
+            },
             {
                 tag: 'fig[fig-type=listing]',
                 node: 'listing_element',

package/dist/es/jats/importer/jats-transformations.js

@@ -101,12 +101,10 @@ export const createBoxedElementSection = (body, createElement) => {
 };
 export const createBody = (doc, body, createElement) => {
     const group = createSectionGroup('body', createElement);
-    const paragraphs = doc.querySelectorAll('body > p');
-    group.append(...paragraphs);
-    const sections = doc.querySelectorAll('body > sec:not([sec-type="backmatter"]), body > sec:not([sec-type])');
-    sections.forEach((section) => {
-        removeNodeFromParent(section);
-        group.appendChild(section);
+    const elements = body.querySelectorAll(':scope > *:not(sec), :scope > sec:not([sec-type="backmatter"]), :scope > sec:not([sec-type])');
+    elements.forEach((element) => {
+        removeNodeFromParent(element);
+        group.appendChild(element);
     });
     moveFloatsGroupToBody(doc, group, createElement);
     body.append(group);

package/dist/es/schema/index.js

@@ -39,6 +39,7 @@ import { contributors } from './nodes/contributors';
 import { corresp } from './nodes/corresp';
 import { crossReference } from './nodes/cross_reference';
 import { doc } from './nodes/doc';
+import { embed } from './nodes/embed';
 import { equation } from './nodes/equation';
 import { equationElement } from './nodes/equation_element';
 import { figcaption } from './nodes/figcaption';
@@ -79,18 +80,23 @@ import { tableElementFooter } from './nodes/table_element_footer';
 import { text } from './nodes/text';
 import { title } from './nodes/title';
 export * from './groups';
-export * from './types';
-export * from './nodes/comment';
-export * from './nodes/comments';
+export * from './nodes/affiliation';
+export * from './nodes/affiliations';
 export * from './nodes/attribution';
-export * from './nodes/bibliography_item';
+export * from './nodes/author_notes';
 export * from './nodes/bibliography_element';
+export * from './nodes/bibliography_item';
 export * from './nodes/bibliography_section';
 export * from './nodes/blockquote_element';
 export * from './nodes/box_element';
 export * from './nodes/caption';
 export * from './nodes/caption_title';
 export * from './nodes/citation';
+export * from './nodes/comment';
+export * from './nodes/comments';
+export * from './nodes/contributor';
+export * from './nodes/contributors';
+export * from './nodes/corresp';
 export * from './nodes/cross_reference';
 export * from './nodes/doc';
 export * from './nodes/equation';
@@ -98,19 +104,19 @@ export * from './nodes/equation_element';
 export * from './nodes/figcaption';
 export * from './nodes/figure';
 export * from './nodes/figure_element';
-export * from './nodes/general_table_footnote';
 export * from './nodes/footnote';
 export * from './nodes/footnotes_element';
 export * from './nodes/footnotes_section';
+export * from './nodes/general_table_footnote';
 export * from './nodes/graphical_abstract_section';
 export * from './nodes/hard_break';
 export * from './nodes/highlight_marker';
 export * from './nodes/inline_equation';
 export * from './nodes/inline_footnote';
-export * from './nodes/keyword_group';
 export * from './nodes/keyword';
-export * from './nodes/keywords_element';
+export * from './nodes/keyword_group';
 export * from './nodes/keywords';
+export * from './nodes/keywords_element';
 export * from './nodes/link';
 export * from './nodes/list';
 export * from './nodes/listing';
@@ -123,20 +129,16 @@ export * from './nodes/placeholder_element';
 export * from './nodes/pullquote_element';
 export * from './nodes/section';
 export * from './nodes/section_title';
+export * from './nodes/supplement';
+export * from './nodes/supplements';
 export * from './nodes/table';
 export * from './nodes/table_col';
 export * from './nodes/table_element';
-export * from './nodes/text';
-export * from './nodes/affiliation';
-export * from './nodes/contributor';
 export * from './nodes/table_element_footer';
+export * from './nodes/text';
 export * from './nodes/title';
-export * from './nodes/affiliations';
-export * from './nodes/contributors';
-export * from './nodes/supplement';
-export * from './nodes/supplements';
-export * from './nodes/corresp';
-export * from './nodes/author_notes';
+export * from './types';
+export * from './nodes/embed';
 export const schema = new Schema({
     marks: {
         bold,
@@ -221,5 +223,6 @@ export const schema = new Schema({
         box_element,
         awards,
         award,
+        embed,
     },
 });

package/dist/es/schema/nodes/embed.js

@@ -0,0 +1,35 @@
+/*!
+ * © 2024 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+export const embed = {
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+        href: { default: undefined },
+        mimetype: { default: undefined },
+        mimeSubtype: { default: undefined },
+    },
+    group: 'block element',
+    toDOM: (node) => {
+        return [
+            'div',
+            {
+                class: 'embed',
+                id: node.attrs.id,
+            },
+        ];
+    },
+};
+export const isEmbedNode = (node) => node.type === node.type.schema.nodes.embed;

package/dist/es/version.js

@@ -1 +1 @@
-export const VERSION = "3.0.21";
+export const VERSION = "3.0.22";

package/dist/types/schema/index.d.ts

@@ -16,18 +16,23 @@
 import { Schema } from 'prosemirror-model';
 import { Marks, Nodes } from './types';
 export * from './groups';
-export * from './types';
-export * from './nodes/comment';
-export * from './nodes/comments';
+export * from './nodes/affiliation';
+export * from './nodes/affiliations';
 export * from './nodes/attribution';
-export * from './nodes/bibliography_item';
+export * from './nodes/author_notes';
 export * from './nodes/bibliography_element';
+export * from './nodes/bibliography_item';
 export * from './nodes/bibliography_section';
 export * from './nodes/blockquote_element';
 export * from './nodes/box_element';
 export * from './nodes/caption';
 export * from './nodes/caption_title';
 export * from './nodes/citation';
+export * from './nodes/comment';
+export * from './nodes/comments';
+export * from './nodes/contributor';
+export * from './nodes/contributors';
+export * from './nodes/corresp';
 export * from './nodes/cross_reference';
 export * from './nodes/doc';
 export * from './nodes/equation';
@@ -35,19 +40,19 @@ export * from './nodes/equation_element';
 export * from './nodes/figcaption';
 export * from './nodes/figure';
 export * from './nodes/figure_element';
-export * from './nodes/general_table_footnote';
 export * from './nodes/footnote';
 export * from './nodes/footnotes_element';
 export * from './nodes/footnotes_section';
+export * from './nodes/general_table_footnote';
 export * from './nodes/graphical_abstract_section';
 export * from './nodes/hard_break';
 export * from './nodes/highlight_marker';
 export * from './nodes/inline_equation';
 export * from './nodes/inline_footnote';
-export * from './nodes/keyword_group';
 export * from './nodes/keyword';
-export * from './nodes/keywords_element';
+export * from './nodes/keyword_group';
 export * from './nodes/keywords';
+export * from './nodes/keywords_element';
 export * from './nodes/link';
 export * from './nodes/list';
 export * from './nodes/listing';
@@ -60,18 +65,14 @@ export * from './nodes/placeholder_element';
 export * from './nodes/pullquote_element';
 export * from './nodes/section';
 export * from './nodes/section_title';
+export * from './nodes/supplement';
+export * from './nodes/supplements';
 export * from './nodes/table';
 export * from './nodes/table_col';
 export * from './nodes/table_element';
-export * from './nodes/text';
-export * from './nodes/affiliation';
-export * from './nodes/contributor';
 export * from './nodes/table_element_footer';
+export * from './nodes/text';
 export * from './nodes/title';
-export * from './nodes/affiliations';
-export * from './nodes/contributors';
-export * from './nodes/supplement';
-export * from './nodes/supplements';
-export * from './nodes/corresp';
-export * from './nodes/author_notes';
+export * from './types';
+export * from './nodes/embed';
 export declare const schema: Schema<Nodes, Marks>;

package/dist/types/schema/nodes/embed.d.ts

@@ -0,0 +1,30 @@
+/*!
+ * © 2024 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { NodeSpec } from 'prosemirror-model';
+import { ManuscriptNode } from '../types';
+interface Attrs {
+    id: string;
+    href: string;
+    show: string;
+    mimetype: string;
+    mimeSubtype: string;
+}
+export interface EmbedNode extends ManuscriptNode {
+    attrs: Attrs;
+}
+export declare const embed: NodeSpec;
+export declare const isEmbedNode: (node: ManuscriptNode) => node is EmbedNode;
+export {};

package/dist/types/schema/types.d.ts

@@ -17,7 +17,7 @@ import { Fragment, Mark as ProsemirrorMark, MarkType, Node as ProsemirrorNode, N
 import { EditorState, NodeSelection, Plugin, TextSelection, Transaction } from 'prosemirror-state';
 import { EditorView, NodeView } from 'prosemirror-view';
 export type Marks = 'bold' | 'code' | 'italic' | 'smallcaps' | 'strikethrough' | 'styled' | 'subscript' | 'superscript' | 'underline' | 'tracked_insert' | 'tracked_delete';
-export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'list' | 'caption' | 'caption_title' | 'comment' | 'comments' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keyword_group' | 'keywords' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'abstracts' | 'body' | 'backmatter' | 'missing_figure' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'table_header' | 'text' | 'affiliation' | 'contributor' | 'table_element_footer' | 'title' | 'affiliations' | 'contributors' | 'supplements' | 'supplement' | 'author_notes' | 'corresp' | 'general_table_footnote' | 'box_element' | 'awards' | 'award';
+export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'list' | 'caption' | 'caption_title' | 'comment' | 'comments' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keyword_group' | 'keywords' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'abstracts' | 'body' | 'backmatter' | 'missing_figure' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'table_header' | 'text' | 'affiliation' | 'contributor' | 'table_element_footer' | 'title' | 'affiliations' | 'contributors' | 'supplements' | 'supplement' | 'author_notes' | 'corresp' | 'general_table_footnote' | 'box_element' | 'awards' | 'award' | 'embed';
 export type ManuscriptSchema = Schema<Nodes, Marks>;
 export type ManuscriptEditorState = EditorState;
 export type ManuscriptEditorView = EditorView;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const VERSION = "3.0.21";
+export declare const VERSION = "3.0.22";

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "3.0.21",
+  "version": "3.0.22",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",