@manuscripts/transform 2.1.4 → 2.1.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/index.js +0 -1
- package/dist/cjs/jats/importer/jats-body-dom-parser.js +27 -72
- package/dist/cjs/jats/importer/jats-parser-utils.js +6 -0
- package/dist/cjs/jats/jats-exporter.js +30 -38
- package/dist/cjs/schema/index.js +0 -1
- package/dist/cjs/schema/nodes/equation.js +12 -14
- package/dist/cjs/schema/nodes/equation_element.js +4 -5
- package/dist/cjs/schema/nodes/inline_equation.js +13 -15
- package/dist/cjs/transformer/builders.js +1 -8
- package/dist/cjs/transformer/decode.js +4 -7
- package/dist/cjs/transformer/encode.js +5 -25
- package/dist/cjs/transformer/node-types.js +0 -1
- package/dist/cjs/transformer/object-types.js +0 -1
- package/dist/es/index.js +0 -1
- package/dist/es/jats/importer/jats-body-dom-parser.js +28 -73
- package/dist/es/jats/importer/jats-parser-utils.js +6 -0
- package/dist/es/jats/jats-exporter.js +30 -38
- package/dist/es/schema/index.js +0 -1
- package/dist/es/schema/nodes/equation.js +12 -14
- package/dist/es/schema/nodes/equation_element.js +4 -5
- package/dist/es/schema/nodes/inline_equation.js +13 -15
- package/dist/es/transformer/builders.js +0 -6
- package/dist/es/transformer/decode.js +4 -7
- package/dist/es/transformer/encode.js +5 -25
- package/dist/es/transformer/node-types.js +0 -1
- package/dist/es/transformer/object-types.js +0 -1
- package/dist/types/index.d.ts +0 -1
- package/dist/types/jats/jats-exporter.d.ts +1 -0
- package/dist/types/schema/index.d.ts +0 -1
- package/dist/types/schema/nodes/equation.d.ts +3 -4
- package/dist/types/schema/nodes/equation_element.d.ts +1 -2
- package/dist/types/schema/nodes/inline_equation.d.ts +4 -3
- package/dist/types/transformer/builders.d.ts +1 -2
- package/package.json +4 -5
- package/dist/cjs/mathjax/index.js +0 -41
- package/dist/cjs/mathjax/mathjax-packages.js +0 -20
- package/dist/cjs/mathjax/mathml-to-svg.js +0 -70
- package/dist/cjs/mathjax/tex-to-mathml.js +0 -49
- package/dist/cjs/mathjax/tex-to-svg.js +0 -59
- package/dist/es/mathjax/index.js +0 -12
- package/dist/es/mathjax/mathjax-packages.js +0 -17
- package/dist/es/mathjax/mathml-to-svg.js +0 -66
- package/dist/es/mathjax/tex-to-mathml.js +0 -45
- package/dist/es/mathjax/tex-to-svg.js +0 -55
- package/dist/types/mathjax/index.d.ts +0 -3
- package/dist/types/mathjax/mathjax-packages.d.ts +0 -16
- package/dist/types/mathjax/mathml-to-svg.d.ts +0 -17
- package/dist/types/mathjax/tex-to-mathml.d.ts +0 -17
- package/dist/types/mathjax/tex-to-svg.d.ts +0 -17
package/dist/cjs/index.js
CHANGED
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@@ -18,7 +18,6 @@ exports.isSectionLabelNode = void 0;
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__exportStar(require("./lib/section-group-type"), exports);
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__exportStar(require("./lib/table-cell-styles"), exports);
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__exportStar(require("./lib/utils"), exports);
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__exportStar(require("./mathjax"), exports);
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__exportStar(require("./schema"), exports);
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__exportStar(require("./transformer"), exports);
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__exportStar(require("./jats"), exports);
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@@ -21,8 +21,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
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exports.jatsBodyDOMParser = void 0;
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const mime_1 = __importDefault(require("mime"));
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const prosemirror_model_1 = require("prosemirror-model");
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const mathml_to_svg_1 = require("../../mathjax/mathml-to-svg");
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const tex_to_svg_1 = require("../../mathjax/tex-to-svg");
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const schema_1 = require("../../schema");
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const transformer_1 = require("../../transformer");
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const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
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@@ -39,6 +37,28 @@ const chooseContentType = (graphicNode) => {
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}
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}
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};
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const getEquationContent = (p) => {
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var _a;
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const element = p;
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const id = element.getAttribute('id');
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const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
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let contents = '';
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let format = '';
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for (const child of container.childNodes) {
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const nodeName = child.nodeName.replace(/^[a-z]:/, '');
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switch (nodeName) {
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case 'tex-math':
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contents = child.innerHTML;
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format = 'tex';
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break;
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case 'mml:math':
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contents = child.outerHTML;
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format = 'mathml';
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break;
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}
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}
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return { id, format, contents };
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};
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const marks = [
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{
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tag: 'bold',
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@@ -147,91 +167,26 @@ const nodes = [
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tag: 'inline-formula',
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node: 'inline_equation',
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getAttrs: (node) => {
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var _a, _b, _c, _d, _e;
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const element = node;
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id: element.getAttribute('id'),
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MathMLRepresentation: '',
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SVGRepresentation: '',
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TeXRepresentation: '',
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};
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const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
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for (const child of container.childNodes) {
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const nodeName = child.nodeName.replace(/^[a-z]:/, '');
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switch (nodeName) {
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case 'tex-math':
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attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
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if (attrs.TeXRepresentation) {
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attrs.SVGRepresentation =
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(_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
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}
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break;
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case 'mml:math':
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;
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child.removeAttribute('id');
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attrs.MathMLRepresentation = transformer_1.xmlSerializer.serializeToString(child);
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if (attrs.MathMLRepresentation) {
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attrs.SVGRepresentation =
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(_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLRepresentation, true)) !== null && _e !== void 0 ? _e : '';
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}
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break;
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}
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}
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return attrs;
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return getEquationContent(element);
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},
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},
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{
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tag: 'disp-formula',
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node: 'equation_element',
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getAttrs: (node) => {
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var _a, _b;
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const element = node;
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const caption = element.querySelector('figcaption');
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return {
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id: element.getAttribute('id'),
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-
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label: (_b = (_a = element.querySelector('label')) === null || _a === void 0 ? void 0 : _a.textContent) !== null && _b !== void 0 ? _b : '',
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};
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},
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getContent: (node, schema) => {
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var _a, _b, _c, _d, _e;
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const element = node;
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const attrs =
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MathMLStringRepresentation: '',
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SVGStringRepresentation: '',
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TeXRepresentation: '',
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};
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const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
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for (const child of container.childNodes) {
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const nodeName = child.nodeName.replace(/^[a-z]:/, '');
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switch (nodeName) {
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case 'tex-math':
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attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
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if (attrs.TeXRepresentation) {
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attrs.SVGStringRepresentation =
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(_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
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}
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break;
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case 'mml:math':
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;
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child.removeAttribute('id');
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attrs.MathMLStringRepresentation =
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transformer_1.xmlSerializer.serializeToString(child);
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if (attrs.MathMLStringRepresentation) {
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attrs.SVGStringRepresentation =
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(_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLStringRepresentation, true)) !== null && _e !== void 0 ? _e : '';
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}
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break;
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}
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}
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const caption = element.querySelector('figcaption');
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const figcaption = schema.nodes.figcaption.create();
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const attrs = getEquationContent(element);
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return prosemirror_model_1.Fragment.from([
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schema.nodes.equation.createChecked(attrs),
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caption
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?
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exports.jatsBodyDOMParser.parse(caption, {
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topNode: figcaption,
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})
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: figcaption,
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schema.nodes.equation.createChecked(Object.assign({}, attrs)),
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]);
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},
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},
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*/
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.htmlFromJatsNode = exports.updateDocumentIDs = void 0;
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const uuid_1 = require("uuid");
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const schema_1 = require("../../schema");
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const transformer_1 = require("../../transformer");
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const updateDocumentIDs = (node, replacements) => {
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const warnings = [];
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@@ -30,6 +32,10 @@ function recurseDoc(node, fn) {
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node.descendants((n) => fn(n));
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}
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const updateNodeID = (node, replacements, warnings) => {
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if (node.type === schema_1.schema.nodes.inline_equation) {
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node.attrs = Object.assign(Object.assign({}, node.attrs), { id: `InlineMathFragment:${(0, uuid_1.v4)()}` });
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return;
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}
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}
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@@ -95,7 +95,7 @@ const createDefaultIdGenerator = () => {
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const counter = (0, exports.createCounter)();
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return async (element) => {
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const value = String(counter.increment(element.nodeName));
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return `${element.
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return `${element.localName}-${value}`;
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};
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const chooseRefType = (objectType) => {
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@@ -164,6 +164,7 @@ class JATSExporter {
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};
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this.nodeFromJATS = (JATSFragment) => {
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JATSFragment = JATSFragment.trim();
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JATSFragment = JATSFragment.replace(' ', ' ');
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if (!JATSFragment.length) {
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return null;
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@@ -686,22 +687,20 @@ class JATSExporter {
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},
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doc: () => '',
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equation: (node) => {
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return formula;
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return this.createEquation(node);
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},
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inline_equation: (node) => {
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const eqElement = this.document.createElement('inline-formula');
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const equation = this.createEquation(node, true);
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eqElement.append(equation);
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return eqElement;
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},
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equation_element: (node) => {
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const eqElement = this.document.createElement('disp-formula');
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eqElement.setAttribute('id', normalizeID(node.attrs.id));
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processChildNodes(eqElement, node, schema_1.schema.nodes.equation);
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return eqElement;
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},
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equation_element: (node) => createFigureElement(node, 'fig', node.type.schema.nodes.equation, 'equation'),
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figcaption: (node) => {
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if (!node.textContent) {
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return '';
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@@ -751,28 +750,6 @@ class JATSExporter {
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hard_break: () => '',
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highlight_marker: () => '',
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inline_equation: (node) => {
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const formula = this.document.createElement('inline-formula');
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formula.setAttribute('id', normalizeID(node.attrs.id));
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if (node.attrs.TeXRepresentation) {
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const math = this.document.createElement('tex-math');
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math.textContent = node.attrs.TeXRepresentation;
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formula.appendChild(math);
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}
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else if (node.attrs.MathMLRepresentation) {
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const math = this.nodeFromJATS(node.attrs.MathMLRepresentation);
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formula.appendChild(math);
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}
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}
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else if (node.attrs.SVGRepresentation) {
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const math = this.nodeFromJATS(node.attrs.SVGRepresentation);
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formula.appendChild(math);
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}
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}
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return formula;
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},
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inline_footnote: (node) => {
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const xref = this.document.createElement('xref');
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xref.setAttribute('ref-type', 'fn');
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@@ -1613,6 +1590,21 @@ class JATSExporter {
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this.citationTexts.set(id, output);
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});
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}
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createEquation(node, isInline = false) {
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if (node.attrs.format === 'tex') {
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const texMath = this.document.createElement('tex-math');
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texMath.innerHTML = node.attrs.contents;
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return texMath;
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}
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else {
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const math = this.nodeFromJATS(node.attrs.contents);
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const mathml = math;
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if (!isInline) {
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mathml.setAttribute('id', normalizeID(node.attrs.id));
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}
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return mathml;
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}
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}
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buildKeywords(articleMeta) {
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const keywords = [...this.modelMap.values()].filter((model) => model.objectType === json_schema_1.ObjectTypes.Keyword);
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const keywordGroups = new Map();
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package/dist/cjs/schema/index.js
CHANGED
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__exportStar(require("./nodes/graphical_abstract_section"), exports);
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__exportStar(require("./nodes/hard_break"), exports);
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__exportStar(require("./nodes/highlight_marker"), exports);
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content: '(equation | placeholder)
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content: '(equation | placeholder)',
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'div',
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*/
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const { id, contents, format } = inlineEquationNode.attrs;
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exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.
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exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
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@@ -354,20 +348,13 @@ const encoders = {
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@@ -414,12 +401,6 @@ const encoders = {
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.map((childNode) => childNode.attrs.id)
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.filter((id) => id),
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|
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SVGRepresentation: node.attrs.SVGRepresentation,
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}),
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@@ -593,8 +574,7 @@ const encode = (node) => {
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|
}
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|
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if (parent.type === schema_1.schema.nodes.paragraph
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|
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child.type !== schema_1.schema.nodes.inline_equation) {
|
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|
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if (parent.type === schema_1.schema.nodes.paragraph) {
|
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|
return;
|
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|
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if (child.type === schema_1.schema.nodes.footnotes_element) {
|
|
@@ -39,7 +39,6 @@ exports.nodeTypesMap = new Map([
|
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39
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|
[schema_1.schema.nodes.footnotes_section, json_schema_1.ObjectTypes.Section],
|
|
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[schema_1.schema.nodes.graphical_abstract_section, json_schema_1.ObjectTypes.Section],
|
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41
41
|
[schema_1.schema.nodes.highlight_marker, json_schema_1.ObjectTypes.HighlightMarker],
|
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42
|
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[schema_1.schema.nodes.inline_equation, json_schema_1.ObjectTypes.InlineMathFragment],
|
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42
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[schema_1.schema.nodes.keyword, json_schema_1.ObjectTypes.Keyword],
|
|
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43
|
[schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
|
|
45
44
|
[schema_1.schema.nodes.keywords, json_schema_1.ObjectTypes.Section],
|
|
@@ -38,7 +38,6 @@ exports.manuscriptObjects = [
|
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38
38
|
json_schema_1.ObjectTypes.CommentAnnotation,
|
|
39
39
|
json_schema_1.ObjectTypes.Contributor,
|
|
40
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|
json_schema_1.ObjectTypes.Footnote,
|
|
41
|
-
json_schema_1.ObjectTypes.InlineMathFragment,
|
|
42
41
|
json_schema_1.ObjectTypes.Section,
|
|
43
42
|
].concat(exports.elementObjects);
|
|
44
43
|
const isManuscriptModel = (model) => {
|