@manuscripts/transform 2.1.4 → 2.1.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (49) hide show
  1. package/dist/cjs/index.js +0 -1
  2. package/dist/cjs/jats/importer/jats-body-dom-parser.js +27 -72
  3. package/dist/cjs/jats/importer/jats-parser-utils.js +6 -0
  4. package/dist/cjs/jats/jats-exporter.js +30 -38
  5. package/dist/cjs/schema/index.js +0 -1
  6. package/dist/cjs/schema/nodes/equation.js +12 -14
  7. package/dist/cjs/schema/nodes/equation_element.js +4 -5
  8. package/dist/cjs/schema/nodes/inline_equation.js +13 -15
  9. package/dist/cjs/transformer/builders.js +1 -8
  10. package/dist/cjs/transformer/decode.js +4 -7
  11. package/dist/cjs/transformer/encode.js +5 -25
  12. package/dist/cjs/transformer/node-types.js +0 -1
  13. package/dist/cjs/transformer/object-types.js +0 -1
  14. package/dist/es/index.js +0 -1
  15. package/dist/es/jats/importer/jats-body-dom-parser.js +28 -73
  16. package/dist/es/jats/importer/jats-parser-utils.js +6 -0
  17. package/dist/es/jats/jats-exporter.js +30 -38
  18. package/dist/es/schema/index.js +0 -1
  19. package/dist/es/schema/nodes/equation.js +12 -14
  20. package/dist/es/schema/nodes/equation_element.js +4 -5
  21. package/dist/es/schema/nodes/inline_equation.js +13 -15
  22. package/dist/es/transformer/builders.js +0 -6
  23. package/dist/es/transformer/decode.js +4 -7
  24. package/dist/es/transformer/encode.js +5 -25
  25. package/dist/es/transformer/node-types.js +0 -1
  26. package/dist/es/transformer/object-types.js +0 -1
  27. package/dist/types/index.d.ts +0 -1
  28. package/dist/types/jats/jats-exporter.d.ts +1 -0
  29. package/dist/types/schema/index.d.ts +0 -1
  30. package/dist/types/schema/nodes/equation.d.ts +3 -4
  31. package/dist/types/schema/nodes/equation_element.d.ts +1 -2
  32. package/dist/types/schema/nodes/inline_equation.d.ts +4 -3
  33. package/dist/types/transformer/builders.d.ts +1 -2
  34. package/package.json +4 -5
  35. package/dist/cjs/mathjax/index.js +0 -41
  36. package/dist/cjs/mathjax/mathjax-packages.js +0 -20
  37. package/dist/cjs/mathjax/mathml-to-svg.js +0 -70
  38. package/dist/cjs/mathjax/tex-to-mathml.js +0 -49
  39. package/dist/cjs/mathjax/tex-to-svg.js +0 -59
  40. package/dist/es/mathjax/index.js +0 -12
  41. package/dist/es/mathjax/mathjax-packages.js +0 -17
  42. package/dist/es/mathjax/mathml-to-svg.js +0 -66
  43. package/dist/es/mathjax/tex-to-mathml.js +0 -45
  44. package/dist/es/mathjax/tex-to-svg.js +0 -55
  45. package/dist/types/mathjax/index.d.ts +0 -3
  46. package/dist/types/mathjax/mathjax-packages.d.ts +0 -16
  47. package/dist/types/mathjax/mathml-to-svg.d.ts +0 -17
  48. package/dist/types/mathjax/tex-to-mathml.d.ts +0 -17
  49. package/dist/types/mathjax/tex-to-svg.d.ts +0 -17
package/dist/cjs/index.js CHANGED
@@ -18,7 +18,6 @@ exports.isSectionLabelNode = void 0;
18
18
  __exportStar(require("./lib/section-group-type"), exports);
19
19
  __exportStar(require("./lib/table-cell-styles"), exports);
20
20
  __exportStar(require("./lib/utils"), exports);
21
- __exportStar(require("./mathjax"), exports);
22
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  __exportStar(require("./schema"), exports);
23
22
  __exportStar(require("./transformer"), exports);
24
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  __exportStar(require("./jats"), exports);
@@ -21,8 +21,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
21
21
  exports.jatsBodyDOMParser = void 0;
22
22
  const mime_1 = __importDefault(require("mime"));
23
23
  const prosemirror_model_1 = require("prosemirror-model");
24
- const mathml_to_svg_1 = require("../../mathjax/mathml-to-svg");
25
- const tex_to_svg_1 = require("../../mathjax/tex-to-svg");
26
24
  const schema_1 = require("../../schema");
27
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  const transformer_1 = require("../../transformer");
28
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  const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
@@ -39,6 +37,28 @@ const chooseContentType = (graphicNode) => {
39
37
  }
40
38
  }
41
39
  };
40
+ const getEquationContent = (p) => {
41
+ var _a;
42
+ const element = p;
43
+ const id = element.getAttribute('id');
44
+ const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
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+ let contents = '';
46
+ let format = '';
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+ for (const child of container.childNodes) {
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+ const nodeName = child.nodeName.replace(/^[a-z]:/, '');
49
+ switch (nodeName) {
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+ case 'tex-math':
51
+ contents = child.innerHTML;
52
+ format = 'tex';
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+ break;
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+ case 'mml:math':
55
+ contents = child.outerHTML;
56
+ format = 'mathml';
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+ break;
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+ }
59
+ }
60
+ return { id, format, contents };
61
+ };
42
62
  const marks = [
43
63
  {
44
64
  tag: 'bold',
@@ -147,91 +167,26 @@ const nodes = [
147
167
  tag: 'inline-formula',
148
168
  node: 'inline_equation',
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169
  getAttrs: (node) => {
150
- var _a, _b, _c, _d, _e;
151
170
  const element = node;
152
- const attrs = {
153
- id: element.getAttribute('id'),
154
- MathMLRepresentation: '',
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- SVGRepresentation: '',
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- TeXRepresentation: '',
157
- };
158
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
159
- for (const child of container.childNodes) {
160
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
161
- switch (nodeName) {
162
- case 'tex-math':
163
- attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
164
- if (attrs.TeXRepresentation) {
165
- attrs.SVGRepresentation =
166
- (_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
167
- }
168
- break;
169
- case 'mml:math':
170
- ;
171
- child.removeAttribute('id');
172
- attrs.MathMLRepresentation = transformer_1.xmlSerializer.serializeToString(child);
173
- if (attrs.MathMLRepresentation) {
174
- attrs.SVGRepresentation =
175
- (_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLRepresentation, true)) !== null && _e !== void 0 ? _e : '';
176
- }
177
- break;
178
- }
179
- }
180
- return attrs;
171
+ return getEquationContent(element);
181
172
  },
182
173
  },
183
174
  {
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  tag: 'disp-formula',
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176
  node: 'equation_element',
186
177
  getAttrs: (node) => {
178
+ var _a, _b;
187
179
  const element = node;
188
- const caption = element.querySelector('figcaption');
189
180
  return {
190
181
  id: element.getAttribute('id'),
191
- suppressCaption: !caption,
182
+ label: (_b = (_a = element.querySelector('label')) === null || _a === void 0 ? void 0 : _a.textContent) !== null && _b !== void 0 ? _b : '',
192
183
  };
193
184
  },
194
185
  getContent: (node, schema) => {
195
- var _a, _b, _c, _d, _e;
196
186
  const element = node;
197
- const attrs = {
198
- MathMLStringRepresentation: '',
199
- SVGStringRepresentation: '',
200
- TeXRepresentation: '',
201
- };
202
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
203
- for (const child of container.childNodes) {
204
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
205
- switch (nodeName) {
206
- case 'tex-math':
207
- attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
208
- if (attrs.TeXRepresentation) {
209
- attrs.SVGStringRepresentation =
210
- (_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
211
- }
212
- break;
213
- case 'mml:math':
214
- ;
215
- child.removeAttribute('id');
216
- attrs.MathMLStringRepresentation =
217
- transformer_1.xmlSerializer.serializeToString(child);
218
- if (attrs.MathMLStringRepresentation) {
219
- attrs.SVGStringRepresentation =
220
- (_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLStringRepresentation, true)) !== null && _e !== void 0 ? _e : '';
221
- }
222
- break;
223
- }
224
- }
225
- const caption = element.querySelector('figcaption');
226
- const figcaption = schema.nodes.figcaption.create();
187
+ const attrs = getEquationContent(element);
227
188
  return prosemirror_model_1.Fragment.from([
228
- schema.nodes.equation.createChecked(attrs),
229
- caption
230
- ?
231
- exports.jatsBodyDOMParser.parse(caption, {
232
- topNode: figcaption,
233
- })
234
- : figcaption,
189
+ schema.nodes.equation.createChecked(Object.assign({}, attrs)),
235
190
  ]);
236
191
  },
237
192
  },
@@ -16,6 +16,8 @@
16
16
  */
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.htmlFromJatsNode = exports.updateDocumentIDs = void 0;
19
+ const uuid_1 = require("uuid");
20
+ const schema_1 = require("../../schema");
19
21
  const transformer_1 = require("../../transformer");
20
22
  const updateDocumentIDs = (node, replacements) => {
21
23
  const warnings = [];
@@ -30,6 +32,10 @@ function recurseDoc(node, fn) {
30
32
  node.descendants((n) => fn(n));
31
33
  }
32
34
  const updateNodeID = (node, replacements, warnings) => {
35
+ if (node.type === schema_1.schema.nodes.inline_equation) {
36
+ node.attrs = Object.assign(Object.assign({}, node.attrs), { id: `InlineMathFragment:${(0, uuid_1.v4)()}` });
37
+ return;
38
+ }
33
39
  if (!('id' in node.attrs)) {
34
40
  return;
35
41
  }
@@ -95,7 +95,7 @@ const createDefaultIdGenerator = () => {
95
95
  const counter = (0, exports.createCounter)();
96
96
  return async (element) => {
97
97
  const value = String(counter.increment(element.nodeName));
98
- return `${element.nodeName}-${value}`;
98
+ return `${element.localName}-${value}`;
99
99
  };
100
100
  };
101
101
  const chooseRefType = (objectType) => {
@@ -164,6 +164,7 @@ class JATSExporter {
164
164
  };
165
165
  this.nodeFromJATS = (JATSFragment) => {
166
166
  JATSFragment = JATSFragment.trim();
167
+ JATSFragment = JATSFragment.replace(' ', ' ');
167
168
  if (!JATSFragment.length) {
168
169
  return null;
169
170
  }
@@ -686,22 +687,20 @@ class JATSExporter {
686
687
  },
687
688
  doc: () => '',
688
689
  equation: (node) => {
689
- const formula = this.document.createElement('disp-formula');
690
- formula.setAttribute('id', normalizeID(node.attrs.id));
691
- if (node.attrs.TeXRepresentation) {
692
- const math = this.document.createElement('tex-math');
693
- math.textContent = node.attrs.TeXRepresentation;
694
- formula.appendChild(math);
695
- }
696
- else if (node.attrs.MathMLStringRepresentation) {
697
- const math = this.nodeFromJATS(node.attrs.MathMLStringRepresentation);
698
- if (math) {
699
- formula.appendChild(math);
700
- }
701
- }
702
- return formula;
690
+ return this.createEquation(node);
691
+ },
692
+ inline_equation: (node) => {
693
+ const eqElement = this.document.createElement('inline-formula');
694
+ const equation = this.createEquation(node, true);
695
+ eqElement.append(equation);
696
+ return eqElement;
697
+ },
698
+ equation_element: (node) => {
699
+ const eqElement = this.document.createElement('disp-formula');
700
+ eqElement.setAttribute('id', normalizeID(node.attrs.id));
701
+ processChildNodes(eqElement, node, schema_1.schema.nodes.equation);
702
+ return eqElement;
703
703
  },
704
- equation_element: (node) => createFigureElement(node, 'fig', node.type.schema.nodes.equation, 'equation'),
705
704
  figcaption: (node) => {
706
705
  if (!node.textContent) {
707
706
  return '';
@@ -751,28 +750,6 @@ class JATSExporter {
751
750
  },
752
751
  hard_break: () => '',
753
752
  highlight_marker: () => '',
754
- inline_equation: (node) => {
755
- const formula = this.document.createElement('inline-formula');
756
- formula.setAttribute('id', normalizeID(node.attrs.id));
757
- if (node.attrs.TeXRepresentation) {
758
- const math = this.document.createElement('tex-math');
759
- math.textContent = node.attrs.TeXRepresentation;
760
- formula.appendChild(math);
761
- }
762
- else if (node.attrs.MathMLRepresentation) {
763
- const math = this.nodeFromJATS(node.attrs.MathMLRepresentation);
764
- if (math) {
765
- formula.appendChild(math);
766
- }
767
- }
768
- else if (node.attrs.SVGRepresentation) {
769
- const math = this.nodeFromJATS(node.attrs.SVGRepresentation);
770
- if (math) {
771
- formula.appendChild(math);
772
- }
773
- }
774
- return formula;
775
- },
776
753
  inline_footnote: (node) => {
777
754
  const xref = this.document.createElement('xref');
778
755
  xref.setAttribute('ref-type', 'fn');
@@ -1613,6 +1590,21 @@ class JATSExporter {
1613
1590
  this.citationTexts.set(id, output);
1614
1591
  });
1615
1592
  }
1593
+ createEquation(node, isInline = false) {
1594
+ if (node.attrs.format === 'tex') {
1595
+ const texMath = this.document.createElement('tex-math');
1596
+ texMath.innerHTML = node.attrs.contents;
1597
+ return texMath;
1598
+ }
1599
+ else {
1600
+ const math = this.nodeFromJATS(node.attrs.contents);
1601
+ const mathml = math;
1602
+ if (!isInline) {
1603
+ mathml.setAttribute('id', normalizeID(node.attrs.id));
1604
+ }
1605
+ return mathml;
1606
+ }
1607
+ }
1616
1608
  buildKeywords(articleMeta) {
1617
1609
  const keywords = [...this.modelMap.values()].filter((model) => model.objectType === json_schema_1.ObjectTypes.Keyword);
1618
1610
  const keywordGroups = new Map();
@@ -116,7 +116,6 @@ __exportStar(require("./nodes/footnotes_section"), exports);
116
116
  __exportStar(require("./nodes/graphical_abstract_section"), exports);
117
117
  __exportStar(require("./nodes/hard_break"), exports);
118
118
  __exportStar(require("./nodes/highlight_marker"), exports);
119
- __exportStar(require("./nodes/inline_equation"), exports);
120
119
  __exportStar(require("./nodes/inline_footnote"), exports);
121
120
  __exportStar(require("./nodes/keyword"), exports);
122
121
  __exportStar(require("./nodes/keywords_element"), exports);
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /*!
3
- * © 2019 Atypon Systems LLC
3
+ * © 2023 Atypon Systems LLC
4
4
  *
5
5
  * Licensed under the Apache License, Version 2.0 (the "License");
6
6
  * you may not use this file except in compliance with the License.
@@ -20,9 +20,8 @@ const json_schema_1 = require("@manuscripts/json-schema");
20
20
  exports.equation = {
21
21
  attrs: {
22
22
  id: { default: '' },
23
- MathMLStringRepresentation: { default: '' },
24
- SVGStringRepresentation: { default: '' },
25
- TeXRepresentation: { default: '' },
23
+ contents: { default: '' },
24
+ format: { default: '' },
26
25
  dataTracked: { default: null },
27
26
  },
28
27
  group: 'block',
@@ -30,26 +29,25 @@ exports.equation = {
30
29
  {
31
30
  tag: `div.${json_schema_1.ObjectTypes.Equation}`,
32
31
  getAttrs: (p) => {
33
- const dom = p;
32
+ const htmlEl = p;
34
33
  return {
35
- id: dom.getAttribute('id'),
36
- MathMLStringRepresentation: dom.getAttribute('data-mathml-string-representation'),
37
- SVGStringRepresentation: dom.innerHTML,
38
- TeXRepresentation: dom.getAttribute('data-tex-representation'),
34
+ id: htmlEl.getAttribute('id'),
35
+ format: htmlEl.getAttribute('data-equation-format'),
36
+ contents: htmlEl.innerHTML,
39
37
  };
40
38
  },
41
39
  },
42
40
  ],
43
41
  toDOM: (node) => {
44
42
  const equationNode = node;
43
+ const { id, contents, format } = equationNode.attrs;
45
44
  const dom = document.createElement('div');
46
- dom.setAttribute('id', equationNode.attrs.id);
47
45
  dom.classList.add(json_schema_1.ObjectTypes.Equation);
48
- if (equationNode.attrs.MathMLStringRepresentation) {
49
- dom.setAttribute('data-mathml-string-representation', equationNode.attrs.MathMLStringRepresentation);
46
+ dom.setAttribute('id', id);
47
+ if (format) {
48
+ dom.setAttribute('data-equation-format', format);
50
49
  }
51
- dom.setAttribute('data-tex-representation', equationNode.attrs.TeXRepresentation);
52
- dom.innerHTML = equationNode.attrs.SVGStringRepresentation;
50
+ dom.innerHTML = contents;
53
51
  return dom;
54
52
  },
55
53
  };
@@ -17,11 +17,10 @@
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.equationElement = void 0;
19
19
  exports.equationElement = {
20
- content: '(equation | placeholder) figcaption',
20
+ content: '(equation | placeholder)',
21
21
  attrs: {
22
22
  id: { default: '' },
23
- suppressCaption: { default: true },
24
- suppressTitle: { default: undefined },
23
+ label: { default: '' },
25
24
  dataTracked: { default: null },
26
25
  comments: { default: null },
27
26
  },
@@ -29,7 +28,7 @@ exports.equationElement = {
29
28
  group: 'block element',
30
29
  parseDOM: [
31
30
  {
32
- tag: 'figure.equation',
31
+ tag: 'div.equation',
33
32
  getAttrs: (p) => {
34
33
  const dom = p;
35
34
  return {
@@ -41,7 +40,7 @@ exports.equationElement = {
41
40
  toDOM: (node) => {
42
41
  const equationElementNode = node;
43
42
  return [
44
- 'figure',
43
+ 'div',
45
44
  {
46
45
  class: 'equation',
47
46
  id: equationElementNode.attrs.id,
@@ -16,14 +16,13 @@
16
16
  */
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.inlineEquation = void 0;
19
- const json_schema_1 = require("@manuscripts/json-schema");
20
19
  exports.inlineEquation = {
21
20
  attrs: {
22
- id: { default: '' },
23
- MathMLRepresentation: { default: '' },
24
- SVGRepresentation: { default: '' },
25
- TeXRepresentation: { default: '' },
26
21
  dataTracked: { default: null },
22
+ comments: { default: null },
23
+ id: { default: '' },
24
+ contents: { default: '' },
25
+ format: { default: '' },
27
26
  },
28
27
  atom: true,
29
28
  inline: true,
@@ -31,28 +30,27 @@ exports.inlineEquation = {
31
30
  group: 'inline',
32
31
  parseDOM: [
33
32
  {
34
- tag: `span.${json_schema_1.ObjectTypes.InlineMathFragment}`,
33
+ tag: `span.MPInlineMathFragment`,
35
34
  getAttrs: (p) => {
36
35
  const dom = p;
37
36
  return {
37
+ format: dom.getAttribute('data-equation-format'),
38
38
  id: dom.getAttribute('id'),
39
- MathMLRepresentation: dom.getAttribute('data-mathml-representation') || '',
40
- SVGRepresentation: dom.innerHTML || '',
41
- TeXRepresentation: dom.getAttribute('data-tex-representation') || '',
39
+ contents: dom.innerHTML,
42
40
  };
43
41
  },
44
42
  },
45
43
  ],
46
44
  toDOM: (node) => {
47
45
  const inlineEquationNode = node;
46
+ const { id, contents, format } = inlineEquationNode.attrs;
48
47
  const dom = document.createElement('span');
49
- dom.classList.add(json_schema_1.ObjectTypes.InlineMathFragment);
50
- dom.setAttribute('id', inlineEquationNode.attrs.id);
51
- dom.setAttribute('data-tex-representation', inlineEquationNode.attrs.TeXRepresentation);
52
- if (inlineEquationNode.attrs.MathMLRepresentation) {
53
- dom.setAttribute('data-mathml-representation', inlineEquationNode.attrs.MathMLRepresentation);
48
+ dom.setAttribute('id', id);
49
+ dom.classList.add('MPInlineMathFragment');
50
+ if (format) {
51
+ dom.setAttribute('data-equation-format', format);
54
52
  }
55
- dom.innerHTML = inlineEquationNode.attrs.SVGRepresentation;
53
+ dom.innerHTML = contents;
56
54
  return dom;
57
55
  },
58
56
  };
@@ -18,7 +18,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
18
18
  return (mod && mod.__esModule) ? mod : { "default": mod };
19
19
  };
20
20
  Object.defineProperty(exports, "__esModule", { value: true });
21
- exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildInlineMathFragment = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
21
+ exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
22
22
  const json_schema_1 = require("@manuscripts/json-schema");
23
23
  const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
24
24
  const schema_1 = require("../schema");
@@ -115,13 +115,6 @@ const buildNote = (target, source, contents = '') => ({
115
115
  contents,
116
116
  });
117
117
  exports.buildNote = buildNote;
118
- const buildInlineMathFragment = (containingObject, TeXRepresentation) => ({
119
- _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.InlineMathFragment),
120
- objectType: json_schema_1.ObjectTypes.InlineMathFragment,
121
- containingObject: containingObject || undefined,
122
- TeXRepresentation,
123
- });
124
- exports.buildInlineMathFragment = buildInlineMathFragment;
125
118
  const buildFootnote = (containingObject, contents, kind = 'footnote') => ({
126
119
  _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.Footnote),
127
120
  objectType: json_schema_1.ObjectTypes.Footnote,
@@ -280,9 +280,8 @@ class Decoder {
280
280
  const model = data;
281
281
  return schema_1.schema.nodes.equation.createChecked({
282
282
  id: model._id,
283
- MathMLStringRepresentation: model.MathMLStringRepresentation,
284
- SVGStringRepresentation: model.SVGStringRepresentation,
285
- TeXRepresentation: model.TeXRepresentation,
283
+ contents: model.contents,
284
+ format: model.format,
286
285
  });
287
286
  },
288
287
  [json_schema_1.ObjectTypes.EquationElement]: (data) => {
@@ -301,12 +300,10 @@ class Decoder {
301
300
  else {
302
301
  throw new errors_1.MissingElement(model.containedObjectID);
303
302
  }
304
- const figcaption = this.getFigcaption(model);
305
303
  return schema_1.schema.nodes.equation_element.createChecked({
306
304
  id: model._id,
307
- suppressCaption: Boolean(model.suppressCaption),
308
- suppressTitle: Boolean(model.suppressTitle === undefined ? true : model.suppressTitle),
309
- }, [equation, figcaption]);
305
+ label: model.label,
306
+ }, [equation]);
310
307
  },
311
308
  [json_schema_1.ObjectTypes.FootnotesElement]: (data) => {
312
309
  const foonotesElementModel = data;
@@ -62,12 +62,6 @@ const listContents = (node) => {
62
62
  }
63
63
  return (0, w3c_xmlserializer_1.default)(output);
64
64
  };
65
- const svgDefs = (svg) => {
66
- const template = document.createElement('template');
67
- template.innerHTML = svg.trim();
68
- const defs = template.content.querySelector('defs');
69
- return defs ? (0, w3c_xmlserializer_1.default)(defs) : undefined;
70
- };
71
65
  const tableRowDisplayStyle = (tagName, parent) => {
72
66
  switch (tagName) {
73
67
  case 'thead':
@@ -354,20 +348,13 @@ const encoders = {
354
348
  : false,
355
349
  }),
356
350
  equation: (node) => ({
357
- MathMLStringRepresentation: node.attrs.MathMLStringRepresentation || undefined,
358
- TeXRepresentation: node.attrs.TeXRepresentation,
359
- SVGStringRepresentation: node.attrs.SVGStringRepresentation,
351
+ contents: node.attrs.contents,
352
+ format: node.attrs.format,
360
353
  }),
361
354
  equation_element: (node) => ({
362
355
  containedObjectID: attributeOfNodeType(node, 'equation', 'id'),
363
- caption: inlineContentOfChildNodeType(node, node.type.schema.nodes.figcaption, node.type.schema.nodes.caption),
364
- title: inlineContentOfChildNodeType(node, node.type.schema.nodes.figcaption, node.type.schema.nodes.caption_title, false),
365
- elementType: 'p',
366
- suppressCaption: Boolean(node.attrs.suppressCaption) || undefined,
367
- suppressTitle: node.attrs.suppressTitle === undefined ||
368
- node.attrs.suppressTitle === true
369
- ? undefined
370
- : false,
356
+ elementType: 'div',
357
+ label: node.attrs.label,
371
358
  }),
372
359
  figure: (node) => ({
373
360
  contentType: node.attrs.contentType || undefined,
@@ -414,12 +401,6 @@ const encoders = {
414
401
  .map((childNode) => childNode.attrs.id)
415
402
  .filter((id) => id),
416
403
  }),
417
- inline_equation: (node, parent) => ({
418
- containingObject: parent.attrs.id,
419
- TeXRepresentation: node.attrs.TeXRepresentation,
420
- SVGRepresentation: node.attrs.SVGRepresentation,
421
- SVGGlyphs: svgDefs(node.attrs.SVGRepresentation),
422
- }),
423
404
  keyword: (node, parent) => ({
424
405
  containedGroup: parent.attrs.id,
425
406
  name: keywordContents(node),
@@ -593,8 +574,7 @@ const encode = (node) => {
593
574
  if (placeholderTypes.includes(child.type)) {
594
575
  return;
595
576
  }
596
- if (parent.type === schema_1.schema.nodes.paragraph &&
597
- child.type !== schema_1.schema.nodes.inline_equation) {
577
+ if (parent.type === schema_1.schema.nodes.paragraph) {
598
578
  return;
599
579
  }
600
580
  if (child.type === schema_1.schema.nodes.footnotes_element) {
@@ -39,7 +39,6 @@ exports.nodeTypesMap = new Map([
39
39
  [schema_1.schema.nodes.footnotes_section, json_schema_1.ObjectTypes.Section],
40
40
  [schema_1.schema.nodes.graphical_abstract_section, json_schema_1.ObjectTypes.Section],
41
41
  [schema_1.schema.nodes.highlight_marker, json_schema_1.ObjectTypes.HighlightMarker],
42
- [schema_1.schema.nodes.inline_equation, json_schema_1.ObjectTypes.InlineMathFragment],
43
42
  [schema_1.schema.nodes.keyword, json_schema_1.ObjectTypes.Keyword],
44
43
  [schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
45
44
  [schema_1.schema.nodes.keywords, json_schema_1.ObjectTypes.Section],
@@ -38,7 +38,6 @@ exports.manuscriptObjects = [
38
38
  json_schema_1.ObjectTypes.CommentAnnotation,
39
39
  json_schema_1.ObjectTypes.Contributor,
40
40
  json_schema_1.ObjectTypes.Footnote,
41
- json_schema_1.ObjectTypes.InlineMathFragment,
42
41
  json_schema_1.ObjectTypes.Section,
43
42
  ].concat(exports.elementObjects);
44
43
  const isManuscriptModel = (model) => {
package/dist/es/index.js CHANGED
@@ -1,7 +1,6 @@
1
1
  export * from './lib/section-group-type';
2
2
  export * from './lib/table-cell-styles';
3
3
  export * from './lib/utils';
4
- export * from './mathjax';
5
4
  export * from './schema';
6
5
  export * from './transformer';
7
6
  export * from './jats';