@manuscripts/transform 2.1.3-LEAN-3092-0 → 2.1.3-LEAN-3376-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (62) hide show
  1. package/dist/cjs/index.js +1 -0
  2. package/dist/cjs/jats/importer/jats-body-dom-parser.js +72 -27
  3. package/dist/cjs/jats/importer/jats-body-transformations.js +3 -1
  4. package/dist/cjs/jats/importer/jats-front-parser.js +39 -1
  5. package/dist/cjs/jats/importer/jats-parser-utils.js +0 -6
  6. package/dist/cjs/jats/importer/parse-jats-article.js +3 -6
  7. package/dist/cjs/jats/jats-exporter.js +64 -71
  8. package/dist/cjs/mathjax/index.js +41 -0
  9. package/dist/cjs/mathjax/mathjax-packages.js +20 -0
  10. package/dist/cjs/mathjax/mathml-to-svg.js +70 -0
  11. package/dist/cjs/mathjax/tex-to-mathml.js +49 -0
  12. package/dist/cjs/mathjax/tex-to-svg.js +59 -0
  13. package/dist/cjs/schema/index.js +3 -0
  14. package/dist/cjs/schema/nodes/author_notes.js +27 -0
  15. package/dist/cjs/schema/nodes/contributors.js +1 -1
  16. package/dist/cjs/schema/nodes/equation.js +14 -12
  17. package/dist/cjs/schema/nodes/equation_element.js +5 -4
  18. package/dist/cjs/schema/nodes/inline_equation.js +15 -13
  19. package/dist/cjs/transformer/builders.js +14 -1
  20. package/dist/cjs/transformer/decode.js +20 -5
  21. package/dist/cjs/transformer/encode.js +28 -5
  22. package/dist/cjs/transformer/node-types.js +3 -0
  23. package/dist/cjs/transformer/object-types.js +1 -0
  24. package/dist/es/index.js +1 -0
  25. package/dist/es/jats/importer/jats-body-dom-parser.js +73 -28
  26. package/dist/es/jats/importer/jats-body-transformations.js +3 -1
  27. package/dist/es/jats/importer/jats-front-parser.js +40 -2
  28. package/dist/es/jats/importer/jats-parser-utils.js +0 -6
  29. package/dist/es/jats/importer/parse-jats-article.js +3 -6
  30. package/dist/es/jats/jats-exporter.js +65 -72
  31. package/dist/es/mathjax/index.js +12 -0
  32. package/dist/es/mathjax/mathjax-packages.js +17 -0
  33. package/dist/es/mathjax/mathml-to-svg.js +66 -0
  34. package/dist/es/mathjax/tex-to-mathml.js +45 -0
  35. package/dist/es/mathjax/tex-to-svg.js +55 -0
  36. package/dist/es/schema/index.js +3 -0
  37. package/dist/es/schema/nodes/author_notes.js +24 -0
  38. package/dist/es/schema/nodes/contributors.js +1 -1
  39. package/dist/es/schema/nodes/equation.js +14 -12
  40. package/dist/es/schema/nodes/equation_element.js +5 -4
  41. package/dist/es/schema/nodes/inline_equation.js +15 -13
  42. package/dist/es/transformer/builders.js +11 -0
  43. package/dist/es/transformer/decode.js +20 -5
  44. package/dist/es/transformer/encode.js +28 -5
  45. package/dist/es/transformer/node-types.js +3 -0
  46. package/dist/es/transformer/object-types.js +1 -0
  47. package/dist/types/index.d.ts +1 -0
  48. package/dist/types/jats/importer/jats-front-parser.d.ts +10 -1
  49. package/dist/types/jats/jats-exporter.d.ts +2 -1
  50. package/dist/types/mathjax/index.d.ts +3 -0
  51. package/dist/types/mathjax/mathjax-packages.d.ts +16 -0
  52. package/dist/types/mathjax/mathml-to-svg.d.ts +17 -0
  53. package/dist/types/mathjax/tex-to-mathml.d.ts +17 -0
  54. package/dist/types/mathjax/tex-to-svg.d.ts +17 -0
  55. package/dist/types/schema/index.d.ts +1 -0
  56. package/dist/types/schema/nodes/author_notes.d.ts +25 -0
  57. package/dist/types/schema/nodes/equation.d.ts +4 -3
  58. package/dist/types/schema/nodes/equation_element.d.ts +2 -1
  59. package/dist/types/schema/nodes/inline_equation.d.ts +3 -4
  60. package/dist/types/schema/types.d.ts +1 -1
  61. package/dist/types/transformer/builders.d.ts +3 -1
  62. package/package.json +5 -4
package/dist/cjs/index.js CHANGED
@@ -18,6 +18,7 @@ exports.isSectionLabelNode = void 0;
18
18
  __exportStar(require("./lib/section-group-type"), exports);
19
19
  __exportStar(require("./lib/table-cell-styles"), exports);
20
20
  __exportStar(require("./lib/utils"), exports);
21
+ __exportStar(require("./mathjax"), exports);
21
22
  __exportStar(require("./schema"), exports);
22
23
  __exportStar(require("./transformer"), exports);
23
24
  __exportStar(require("./jats"), exports);
@@ -21,6 +21,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
21
21
  exports.jatsBodyDOMParser = void 0;
22
22
  const mime_1 = __importDefault(require("mime"));
23
23
  const prosemirror_model_1 = require("prosemirror-model");
24
+ const mathml_to_svg_1 = require("../../mathjax/mathml-to-svg");
25
+ const tex_to_svg_1 = require("../../mathjax/tex-to-svg");
24
26
  const schema_1 = require("../../schema");
25
27
  const transformer_1 = require("../../transformer");
26
28
  const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
@@ -37,28 +39,6 @@ const chooseContentType = (graphicNode) => {
37
39
  }
38
40
  }
39
41
  };
40
- const getEquationContent = (p) => {
41
- var _a;
42
- const element = p;
43
- const id = element.getAttribute('id');
44
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
45
- let contents = '';
46
- let format = '';
47
- for (const child of container.childNodes) {
48
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
49
- switch (nodeName) {
50
- case 'tex-math':
51
- contents = child.innerHTML;
52
- format = 'tex';
53
- break;
54
- case 'mml:math':
55
- contents = child.outerHTML;
56
- format = 'mathml';
57
- break;
58
- }
59
- }
60
- return { id, format, contents };
61
- };
62
42
  const marks = [
63
43
  {
64
44
  tag: 'bold',
@@ -167,26 +147,91 @@ const nodes = [
167
147
  tag: 'inline-formula',
168
148
  node: 'inline_equation',
169
149
  getAttrs: (node) => {
150
+ var _a, _b, _c, _d, _e;
170
151
  const element = node;
171
- return getEquationContent(element);
152
+ const attrs = {
153
+ id: element.getAttribute('id'),
154
+ MathMLRepresentation: '',
155
+ SVGRepresentation: '',
156
+ TeXRepresentation: '',
157
+ };
158
+ const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
159
+ for (const child of container.childNodes) {
160
+ const nodeName = child.nodeName.replace(/^[a-z]:/, '');
161
+ switch (nodeName) {
162
+ case 'tex-math':
163
+ attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
164
+ if (attrs.TeXRepresentation) {
165
+ attrs.SVGRepresentation =
166
+ (_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
167
+ }
168
+ break;
169
+ case 'mml:math':
170
+ ;
171
+ child.removeAttribute('id');
172
+ attrs.MathMLRepresentation = transformer_1.xmlSerializer.serializeToString(child);
173
+ if (attrs.MathMLRepresentation) {
174
+ attrs.SVGRepresentation =
175
+ (_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLRepresentation, true)) !== null && _e !== void 0 ? _e : '';
176
+ }
177
+ break;
178
+ }
179
+ }
180
+ return attrs;
172
181
  },
173
182
  },
174
183
  {
175
184
  tag: 'disp-formula',
176
185
  node: 'equation_element',
177
186
  getAttrs: (node) => {
178
- var _a, _b;
179
187
  const element = node;
188
+ const caption = element.querySelector('figcaption');
180
189
  return {
181
190
  id: element.getAttribute('id'),
182
- label: (_b = (_a = element.querySelector('label')) === null || _a === void 0 ? void 0 : _a.textContent) !== null && _b !== void 0 ? _b : '',
191
+ suppressCaption: !caption,
183
192
  };
184
193
  },
185
194
  getContent: (node, schema) => {
195
+ var _a, _b, _c, _d, _e;
186
196
  const element = node;
187
- const attrs = getEquationContent(element);
197
+ const attrs = {
198
+ MathMLStringRepresentation: '',
199
+ SVGStringRepresentation: '',
200
+ TeXRepresentation: '',
201
+ };
202
+ const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
203
+ for (const child of container.childNodes) {
204
+ const nodeName = child.nodeName.replace(/^[a-z]:/, '');
205
+ switch (nodeName) {
206
+ case 'tex-math':
207
+ attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
208
+ if (attrs.TeXRepresentation) {
209
+ attrs.SVGStringRepresentation =
210
+ (_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
211
+ }
212
+ break;
213
+ case 'mml:math':
214
+ ;
215
+ child.removeAttribute('id');
216
+ attrs.MathMLStringRepresentation =
217
+ transformer_1.xmlSerializer.serializeToString(child);
218
+ if (attrs.MathMLStringRepresentation) {
219
+ attrs.SVGStringRepresentation =
220
+ (_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLStringRepresentation, true)) !== null && _e !== void 0 ? _e : '';
221
+ }
222
+ break;
223
+ }
224
+ }
225
+ const caption = element.querySelector('figcaption');
226
+ const figcaption = schema.nodes.figcaption.create();
188
227
  return prosemirror_model_1.Fragment.from([
189
- schema.nodes.equation.createChecked(Object.assign({}, attrs)),
228
+ schema.nodes.equation.createChecked(attrs),
229
+ caption
230
+ ?
231
+ exports.jatsBodyDOMParser.parse(caption, {
232
+ topNode: figcaption,
233
+ })
234
+ : figcaption,
190
235
  ]);
191
236
  },
192
237
  },
@@ -202,7 +202,9 @@ exports.jatsBodyTransformations = {
202
202
  }
203
203
  },
204
204
  moveFootnotes(doc, group, createElement) {
205
- const footnotes = [...doc.querySelectorAll('fn:not(table-wrap-foot fn)')];
205
+ const footnotes = [
206
+ ...doc.querySelectorAll('fn:not(table-wrap-foot fn, author-notes fn)'),
207
+ ];
206
208
  const footnotesSection = doc.querySelector('sec[sec-type="endnotes"]');
207
209
  const footnotesSectionGroup = footnotesSection === null || footnotesSection === void 0 ? void 0 : footnotesSection.querySelector('fn-group');
208
210
  const containingGroup = footnotesSectionGroup || createElement('fn-group');
@@ -179,7 +179,45 @@ exports.jatsFrontParser = {
179
179
  affiliationIDs,
180
180
  };
181
181
  },
182
- parseAuthorNotes(elements) {
182
+ parseAuthorNotes(element) {
183
+ if (!element) {
184
+ return {
185
+ footnotes: [],
186
+ footnoteIDs: new Map(),
187
+ authorNotes: [],
188
+ authorNotesParagraphs: [],
189
+ correspondingIDs: new Map(),
190
+ correspondingList: [],
191
+ };
192
+ }
193
+ const { footnotes, footnoteIDs } = this.parseFootnotes([
194
+ ...element.querySelectorAll('fn:not([fn-type])'),
195
+ ]);
196
+ const authorNotesParagraphs = this.parseParagraphs([
197
+ ...element.querySelectorAll(':scope > p'),
198
+ ]);
199
+ const { correspondingList, correspondingIDs } = this.parseCorresp([
200
+ ...element.querySelectorAll('corresp'),
201
+ ]);
202
+ const authorNotes = [
203
+ (0, transformer_1.buildAuthorNotes)([
204
+ ...footnoteIDs.values(),
205
+ ...authorNotesParagraphs.map((p) => p._id),
206
+ ]),
207
+ ];
208
+ return {
209
+ footnotes,
210
+ footnoteIDs,
211
+ authorNotesParagraphs,
212
+ authorNotes,
213
+ correspondingIDs,
214
+ correspondingList,
215
+ };
216
+ },
217
+ parseParagraphs(elements) {
218
+ return elements.map((p) => (0, transformer_1.buildParagraph)(p.innerHTML));
219
+ },
220
+ parseFootnotes(elements) {
183
221
  const footnoteIDs = new Map();
184
222
  const footnotes = elements.map((element) => {
185
223
  const fn = (0, transformer_1.buildFootnote)('', element.innerHTML);
@@ -16,8 +16,6 @@
16
16
  */
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.htmlFromJatsNode = exports.updateDocumentIDs = void 0;
19
- const uuid_1 = require("uuid");
20
- const schema_1 = require("../../schema");
21
19
  const transformer_1 = require("../../transformer");
22
20
  const updateDocumentIDs = (node, replacements) => {
23
21
  const warnings = [];
@@ -32,10 +30,6 @@ function recurseDoc(node, fn) {
32
30
  node.descendants((n) => fn(n));
33
31
  }
34
32
  const updateNodeID = (node, replacements, warnings) => {
35
- if (node.type === schema_1.schema.nodes.inline_equation) {
36
- node.attrs = Object.assign(Object.assign({}, node.attrs), { id: `InlineMathFragment:${(0, uuid_1.v4)()}` });
37
- return;
38
- }
39
33
  if (!('id' in node.attrs)) {
40
34
  return;
41
35
  }
@@ -35,12 +35,7 @@ const parseJATSFront = (doc, front) => {
35
35
  const { affiliations, affiliationIDs } = jats_front_parser_1.jatsFrontParser.parseAffiliations([
36
36
  ...front.querySelectorAll('article-meta > contrib-group > aff'),
37
37
  ]);
38
- const { footnotes, footnoteIDs } = jats_front_parser_1.jatsFrontParser.parseAuthorNotes([
39
- ...front.querySelectorAll('article-meta > author-notes > fn:not([fn-type])'),
40
- ]);
41
- const { correspondingList, correspondingIDs } = jats_front_parser_1.jatsFrontParser.parseCorresp([
42
- ...front.querySelectorAll('article-meta > author-notes > corresp'),
43
- ]);
38
+ const { footnotes, footnoteIDs, authorNotes, authorNotesParagraphs, correspondingIDs, correspondingList, } = jats_front_parser_1.jatsFrontParser.parseAuthorNotes(front.querySelector('article-meta > author-notes'));
44
39
  const authors = jats_front_parser_1.jatsFrontParser.parseContributors([
45
40
  ...front.querySelectorAll('article-meta > contrib-group > contrib[contrib-type="author"]'),
46
41
  ], affiliationIDs, footnoteIDs, correspondingIDs);
@@ -51,6 +46,8 @@ const parseJATSFront = (doc, front) => {
51
46
  manuscript,
52
47
  titles,
53
48
  journal,
49
+ ...authorNotesParagraphs,
50
+ ...authorNotes,
54
51
  ...footnotes,
55
52
  ...authors,
56
53
  ...affiliations,
@@ -95,7 +95,7 @@ const createDefaultIdGenerator = () => {
95
95
  const counter = (0, exports.createCounter)();
96
96
  return async (element) => {
97
97
  const value = String(counter.increment(element.nodeName));
98
- return `${element.localName}-${value}`;
98
+ return `${element.nodeName}-${value}`;
99
99
  };
100
100
  };
101
101
  const chooseRefType = (objectType) => {
@@ -164,7 +164,6 @@ class JATSExporter {
164
164
  };
165
165
  this.nodeFromJATS = (JATSFragment) => {
166
166
  JATSFragment = JATSFragment.trim();
167
- JATSFragment = JATSFragment.replace(' ', ' ');
168
167
  if (!JATSFragment.length) {
169
168
  return null;
170
169
  }
@@ -615,6 +614,7 @@ class JATSExporter {
615
614
  this.createSerializer = () => {
616
615
  const getModel = (id) => id ? this.modelMap.get(id) : undefined;
617
616
  const nodes = {
617
+ author_notes: () => ['author-notes', 0],
618
618
  title: () => '',
619
619
  affiliations: () => '',
620
620
  contributors: () => '',
@@ -687,20 +687,22 @@ class JATSExporter {
687
687
  },
688
688
  doc: () => '',
689
689
  equation: (node) => {
690
- return this.createEquation(node);
691
- },
692
- inline_equation: (node) => {
693
- const eqElement = this.document.createElement('inline-formula');
694
- const equation = this.createEquation(node, true);
695
- eqElement.append(equation);
696
- return eqElement;
697
- },
698
- equation_element: (node) => {
699
- const eqElement = this.document.createElement('disp-formula');
700
- eqElement.setAttribute('id', normalizeID(node.attrs.id));
701
- processChildNodes(eqElement, node, schema_1.schema.nodes.equation);
702
- return eqElement;
690
+ const formula = this.document.createElement('disp-formula');
691
+ formula.setAttribute('id', normalizeID(node.attrs.id));
692
+ if (node.attrs.TeXRepresentation) {
693
+ const math = this.document.createElement('tex-math');
694
+ math.textContent = node.attrs.TeXRepresentation;
695
+ formula.appendChild(math);
696
+ }
697
+ else if (node.attrs.MathMLStringRepresentation) {
698
+ const math = this.nodeFromJATS(node.attrs.MathMLStringRepresentation);
699
+ if (math) {
700
+ formula.appendChild(math);
701
+ }
702
+ }
703
+ return formula;
703
704
  },
705
+ equation_element: (node) => createFigureElement(node, 'fig', node.type.schema.nodes.equation, 'equation'),
704
706
  figcaption: (node) => {
705
707
  if (!node.textContent) {
706
708
  return '';
@@ -750,6 +752,28 @@ class JATSExporter {
750
752
  },
751
753
  hard_break: () => '',
752
754
  highlight_marker: () => '',
755
+ inline_equation: (node) => {
756
+ const formula = this.document.createElement('inline-formula');
757
+ formula.setAttribute('id', normalizeID(node.attrs.id));
758
+ if (node.attrs.TeXRepresentation) {
759
+ const math = this.document.createElement('tex-math');
760
+ math.textContent = node.attrs.TeXRepresentation;
761
+ formula.appendChild(math);
762
+ }
763
+ else if (node.attrs.MathMLRepresentation) {
764
+ const math = this.nodeFromJATS(node.attrs.MathMLRepresentation);
765
+ if (math) {
766
+ formula.appendChild(math);
767
+ }
768
+ }
769
+ else if (node.attrs.SVGRepresentation) {
770
+ const math = this.nodeFromJATS(node.attrs.SVGRepresentation);
771
+ if (math) {
772
+ formula.appendChild(math);
773
+ }
774
+ }
775
+ return formula;
776
+ },
753
777
  inline_footnote: (node) => {
754
778
  const xref = this.document.createElement('xref');
755
779
  xref.setAttribute('ref-type', 'fn');
@@ -1011,6 +1035,7 @@ class JATSExporter {
1011
1035
  }
1012
1036
  };
1013
1037
  this.buildContributors = (articleMeta) => {
1038
+ var _a;
1014
1039
  const contributors = this.models.filter(isContributor);
1015
1040
  const authorContributors = contributors
1016
1041
  .filter((contributor) => contributor.role === 'author')
@@ -1229,49 +1254,20 @@ class JATSExporter {
1229
1254
  }
1230
1255
  });
1231
1256
  }
1232
- const noteIDs = [];
1233
- for (const contributor of [...authorContributors, ...otherContributors]) {
1234
- if (contributor.footnote) {
1235
- const ids = contributor.footnote.map((note) => {
1236
- return note.noteID;
1237
- });
1238
- noteIDs.push(...ids);
1239
- }
1240
- if (contributor.corresp) {
1241
- const ids = contributor.corresp.map((corresp) => {
1242
- return corresp.correspID;
1243
- });
1244
- noteIDs.push(...ids);
1245
- }
1246
- }
1247
- const footnotes = [];
1248
- footnotes.push(...this.models.filter((0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Footnote)));
1249
- const correspodings = [];
1250
- correspodings.push(...this.models.filter((0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Corresponding)));
1251
- if (footnotes || correspodings) {
1257
+ const authorNotes = (_a = (0, json_schema_1.getModelsByType)(this.modelMap, json_schema_1.ObjectTypes.AuthorNotes)) === null || _a === void 0 ? void 0 : _a[0];
1258
+ if (authorNotes) {
1252
1259
  const authorNotesEl = this.document.createElement('author-notes');
1253
- const usedFootnotes = footnotes.filter((footnote) => {
1254
- return noteIDs.includes(footnote._id);
1255
- });
1256
- const usedCorrespodings = correspodings.filter((corresp) => {
1257
- return noteIDs.includes(corresp._id);
1258
- });
1259
- usedFootnotes.forEach((footnote) => {
1260
- const authorFootNote = this.document.createElement('fn');
1261
- authorFootNote.setAttribute('id', normalizeID(footnote._id));
1262
- authorFootNote.innerHTML = footnote.contents;
1263
- authorNotesEl.appendChild(authorFootNote);
1264
- });
1265
- usedCorrespodings.forEach((corresponding) => {
1266
- const correspondingEl = this.document.createElement('corresp');
1267
- correspondingEl.setAttribute('id', normalizeID(corresponding._id));
1268
- if (corresponding.label) {
1269
- const labelEl = this.document.createElement('label');
1270
- labelEl.textContent = corresponding.label;
1271
- correspondingEl.appendChild(labelEl);
1260
+ authorNotes.containedObjectIDs.forEach((id) => {
1261
+ const model = this.modelMap.get(id);
1262
+ if (!model) {
1263
+ return;
1264
+ }
1265
+ if (id.startsWith('MPParagraphElement')) {
1266
+ this.appendParagraphToElement(model, authorNotesEl);
1267
+ }
1268
+ else if (id.startsWith('MPFootnote')) {
1269
+ this.appendFootnoteToElement(model, authorNotesEl);
1272
1270
  }
1273
- correspondingEl.append(corresponding.contents);
1274
- authorNotesEl.appendChild(correspondingEl);
1275
1271
  });
1276
1272
  if (authorNotesEl.childNodes.length > 0) {
1277
1273
  articleMeta.insertBefore(authorNotesEl, contribGroup.nextSibling);
@@ -1279,6 +1275,18 @@ class JATSExporter {
1279
1275
  }
1280
1276
  }
1281
1277
  };
1278
+ this.appendParagraphToElement = (paragraph, element) => {
1279
+ const paragraphEl = this.document.createElement('p');
1280
+ paragraphEl.setAttribute('id', normalizeID(paragraph._id));
1281
+ paragraphEl.innerHTML = paragraph.contents;
1282
+ element.appendChild(paragraphEl);
1283
+ };
1284
+ this.appendFootnoteToElement = (footnote, element) => {
1285
+ const footnoteEl = this.document.createElement('fn');
1286
+ footnoteEl.setAttribute('id', normalizeID(footnote._id));
1287
+ footnoteEl.innerHTML = footnote.contents;
1288
+ element.appendChild(footnoteEl);
1289
+ };
1282
1290
  this.fixBody = (body, fragment) => {
1283
1291
  fragment.descendants((node) => {
1284
1292
  if (node.attrs.id) {
@@ -1566,21 +1574,6 @@ class JATSExporter {
1566
1574
  this.citationTexts.set(id, output);
1567
1575
  });
1568
1576
  }
1569
- createEquation(node, isInline = false) {
1570
- if (node.attrs.format === 'tex') {
1571
- const texMath = this.document.createElement('tex-math');
1572
- texMath.innerHTML = node.attrs.contents;
1573
- return texMath;
1574
- }
1575
- else {
1576
- const math = this.nodeFromJATS(node.attrs.contents);
1577
- const mathml = math;
1578
- if (!isInline) {
1579
- mathml.setAttribute('id', normalizeID(node.attrs.id));
1580
- }
1581
- return mathml;
1582
- }
1583
- }
1584
1577
  buildKeywords(articleMeta) {
1585
1578
  const keywords = [...this.modelMap.values()].filter((model) => model.objectType === json_schema_1.ObjectTypes.Keyword);
1586
1579
  const keywordGroups = new Map();
@@ -0,0 +1,41 @@
1
+ "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
25
+ Object.defineProperty(exports, "__esModule", { value: true });
26
+ exports.convertTeXToSVG = exports.convertTeXToMathML = exports.convertMathMLToSVG = void 0;
27
+ const convertMathMLToSVG = async (mathml, display) => {
28
+ const { convertMathMLToSVG } = await Promise.resolve().then(() => __importStar(require('./mathml-to-svg')));
29
+ return convertMathMLToSVG(mathml, display);
30
+ };
31
+ exports.convertMathMLToSVG = convertMathMLToSVG;
32
+ const convertTeXToMathML = async (tex, display) => {
33
+ const { convertTeXToMathML } = await Promise.resolve().then(() => __importStar(require('./tex-to-mathml')));
34
+ return convertTeXToMathML(tex, display);
35
+ };
36
+ exports.convertTeXToMathML = convertTeXToMathML;
37
+ const convertTeXToSVG = async (tex, display) => {
38
+ const { convertTeXToSVG } = await Promise.resolve().then(() => __importStar(require('./tex-to-svg')));
39
+ return convertTeXToSVG(tex, display);
40
+ };
41
+ exports.convertTeXToSVG = convertTeXToSVG;
@@ -0,0 +1,20 @@
1
+ "use strict";
2
+ /*!
3
+ * © 2019 Atypon Systems LLC
4
+ *
5
+ * Licensed under the Apache License, Version 2.0 (the "License");
6
+ * you may not use this file except in compliance with the License.
7
+ * You may obtain a copy of the License at
8
+ *
9
+ * http://www.apache.org/licenses/LICENSE-2.0
10
+ *
11
+ * Unless required by applicable law or agreed to in writing, software
12
+ * distributed under the License is distributed on an "AS IS" BASIS,
13
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14
+ * See the License for the specific language governing permissions and
15
+ * limitations under the License.
16
+ */
17
+ Object.defineProperty(exports, "__esModule", { value: true });
18
+ exports.packages = void 0;
19
+ const AllPackages_1 = require("mathjax-full/js/input/tex/AllPackages");
20
+ exports.packages = AllPackages_1.AllPackages.filter((name) => name !== 'html' && name !== 'bussproofs');
@@ -0,0 +1,70 @@
1
+ "use strict";
2
+ /*!
3
+ * © 2019 Atypon Systems LLC
4
+ *
5
+ * Licensed under the Apache License, Version 2.0 (the "License");
6
+ * you may not use this file except in compliance with the License.
7
+ * You may obtain a copy of the License at
8
+ *
9
+ * http://www.apache.org/licenses/LICENSE-2.0
10
+ *
11
+ * Unless required by applicable law or agreed to in writing, software
12
+ * distributed under the License is distributed on an "AS IS" BASIS,
13
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14
+ * See the License for the specific language governing permissions and
15
+ * limitations under the License.
16
+ */
17
+ Object.defineProperty(exports, "__esModule", { value: true });
18
+ exports.convertMathMLToSVG = void 0;
19
+ require("mathjax-full/js/util/entities/all");
20
+ const HTMLAdaptor_1 = require("mathjax-full/js/adaptors/HTMLAdaptor");
21
+ const MmlFactory_1 = require("mathjax-full/js/core/MmlTree/MmlFactory");
22
+ const HTMLDocument_1 = require("mathjax-full/js/handlers/html/HTMLDocument");
23
+ const mathml_1 = require("mathjax-full/js/input/mathml");
24
+ const svg_1 = require("mathjax-full/js/output/svg");
25
+ const transformer_1 = require("../transformer");
26
+ class ManuscriptsMmlFactory extends MmlFactory_1.MmlFactory {
27
+ constructor() {
28
+ super();
29
+ this.nodeMap.set('image', this.nodeMap.get('none'));
30
+ }
31
+ create(kind, properties = {}, children = []) {
32
+ if (kind === 'image') {
33
+ return this.node['none'](properties, children);
34
+ }
35
+ return this.node[kind](properties, children);
36
+ }
37
+ }
38
+ class ManuscriptsHTMLAdaptor extends HTMLAdaptor_1.HTMLAdaptor {
39
+ setAttribute(node, name, value, ns) {
40
+ if (name !== 'xmlns') {
41
+ ns ? node.setAttributeNS(ns, name, value) : node.setAttribute(name, value);
42
+ }
43
+ }
44
+ }
45
+ const InputJax = new mathml_1.MathML();
46
+ const OutputJax = new svg_1.SVG({
47
+ fontCache: 'none',
48
+ });
49
+ const adaptor = new ManuscriptsHTMLAdaptor(window);
50
+ const doc = new HTMLDocument_1.HTMLDocument(document, adaptor, {
51
+ InputJax,
52
+ OutputJax,
53
+ MmlFactory: new ManuscriptsMmlFactory(),
54
+ });
55
+ doc.addStyleSheet();
56
+ const convertMathMLToSVG = (mathml, display) => {
57
+ const item = doc.convert(mathml, {
58
+ display,
59
+ em: 16,
60
+ ex: 8,
61
+ containerWidth: 1000000,
62
+ lineWidth: 1000000,
63
+ scale: 1,
64
+ });
65
+ if (!item || !item.firstChild) {
66
+ return null;
67
+ }
68
+ return transformer_1.xmlSerializer.serializeToString(item.firstChild);
69
+ };
70
+ exports.convertMathMLToSVG = convertMathMLToSVG;
@@ -0,0 +1,49 @@
1
+ "use strict";
2
+ /*!
3
+ * © 2019 Atypon Systems LLC
4
+ *
5
+ * Licensed under the Apache License, Version 2.0 (the "License");
6
+ * you may not use this file except in compliance with the License.
7
+ * You may obtain a copy of the License at
8
+ *
9
+ * http://www.apache.org/licenses/LICENSE-2.0
10
+ *
11
+ * Unless required by applicable law or agreed to in writing, software
12
+ * distributed under the License is distributed on an "AS IS" BASIS,
13
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14
+ * See the License for the specific language governing permissions and
15
+ * limitations under the License.
16
+ */
17
+ Object.defineProperty(exports, "__esModule", { value: true });
18
+ exports.convertTeXToMathML = void 0;
19
+ require("mathjax-full/js/util/entities/all");
20
+ const HTMLAdaptor_1 = require("mathjax-full/js/adaptors/HTMLAdaptor");
21
+ const MathItem_js_1 = require("mathjax-full/js/core/MathItem.js");
22
+ const SerializedMmlVisitor_1 = require("mathjax-full/js/core/MmlTree/SerializedMmlVisitor");
23
+ const HTMLDocument_1 = require("mathjax-full/js/handlers/html/HTMLDocument");
24
+ const tex_1 = require("mathjax-full/js/input/tex");
25
+ const mathjax_packages_1 = require("./mathjax-packages");
26
+ const InputJax = new tex_1.TeX({
27
+ packages: mathjax_packages_1.packages,
28
+ });
29
+ const adaptor = new HTMLAdaptor_1.HTMLAdaptor(window);
30
+ const doc = new HTMLDocument_1.HTMLDocument(document, adaptor, {
31
+ InputJax,
32
+ });
33
+ const visitor = new SerializedMmlVisitor_1.SerializedMmlVisitor();
34
+ const convertTeXToMathML = (tex, display) => {
35
+ const item = doc.convert(tex, {
36
+ display,
37
+ em: 16,
38
+ ex: 8,
39
+ containerWidth: 1000000,
40
+ lineWidth: 1000000,
41
+ scale: 1,
42
+ end: MathItem_js_1.STATE.CONVERT,
43
+ });
44
+ if (!item) {
45
+ return null;
46
+ }
47
+ return visitor.visitTree(item);
48
+ };
49
+ exports.convertTeXToMathML = convertTeXToMathML;