@manuscripts/transform 2.1.1-LEAN-3377-2 → 2.1.1-LEAN-3376-0

package/dist/cjs/jats/importer/jats-body-transformations.js

@@ -265,16 +265,6 @@ exports.jatsBodyTransformations = {
             }
         });
     },
-    orderTableFootnote(doc, body) {
-        const tableInlineFootnotesIds = new Set(Array.from(body.querySelectorAll('tbody > tr > td > xref[ref-type="fn"]').values()).map((inlineFootnote) => inlineFootnote.getAttribute('rid')));
-        const fnGroups = doc.querySelectorAll('table-wrap-foot > fn-group');
-        fnGroups.forEach((fnGroup) => {
-            const orderedFootnotes = Array.from(fnGroup.querySelectorAll('fn')).sort((fn) => tableInlineFootnotesIds.has(fn.getAttribute('id'))
-                ? -1
-                : 0);
-            fnGroup.replaceChildren(...orderedFootnotes);
-        });
-    },
     moveFloatsGroupToBody(doc, body, createElement) {
         const group = doc.querySelector('floats-group');
         if (group) {

package/dist/cjs/jats/importer/jats-front-parser.js

@@ -189,6 +189,13 @@ exports.jatsFrontParser = {
             footnoteIDs,
         };
     },
+    parseAuthorNotesParagraphs(elements) {
+        const paragraphs = [];
+        elements.forEach((p) => {
+            paragraphs.push((0, transformer_1.buildParagraph)(p.innerHTML));
+        });
+        return paragraphs;
+    },
     parseCorresp(elements) {
         const correspondingIDs = new Map();
         const correspondingList = elements.map((element) => {

package/dist/cjs/jats/importer/parse-jats-article.js

@@ -40,6 +40,10 @@ const parseJATSFront = (doc, front) => {
     const { correspondingList, correspondingIDs } = jats_front_parser_1.jatsFrontParser.parseCorresp([
         ...front.querySelectorAll('article-meta > author-notes > corresp'),
     ]);
+    const authorNotesParagraphs = jats_front_parser_1.jatsFrontParser.parseAuthorNotesParagraphs([
+        ...front.querySelectorAll('article-meta > author-notes > p'),
+    ]);
+    const authorNotes = (0, transformer_1.buildAuthorNotes)(Array.from(footnoteIDs.values()).concat(authorNotesParagraphs.map((p) => p._id)));
     const authors = jats_front_parser_1.jatsFrontParser.parseContributors([
         ...front.querySelectorAll('article-meta > contrib-group > contrib[contrib-type="author"]'),
     ], affiliationIDs, footnoteIDs, correspondingIDs);
@@ -50,6 +54,8 @@ const parseJATSFront = (doc, front) => {
         manuscript,
         titles,
         journal,
+        ...authorNotesParagraphs,
+        authorNotes,
         ...footnotes,
         ...authors,
         ...affiliations,
@@ -67,7 +73,6 @@ const parseJATSBody = (doc, body, references) => {
     jats_body_transformations_1.jatsBodyTransformations.createBackmatter(doc, body, createElement);
     jats_body_transformations_1.jatsBodyTransformations.createSuppleMaterials(doc, body, createElement);
     jats_body_transformations_1.jatsBodyTransformations.createKeywords(doc, body, createElement);
-    jats_body_transformations_1.jatsBodyTransformations.orderTableFootnote(doc, body);
     const node = jats_body_dom_parser_1.jatsBodyDOMParser.parse(body).firstChild;
     if (!node) {
         throw new Error('No content was parsed from the JATS article body');

package/dist/cjs/jats/jats-exporter.js

@@ -614,6 +614,7 @@ class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
+                author_notes: () => ['author-notes', 0],
                 title: () => '',
                 affiliations: () => '',
                 contributors: () => '',
@@ -1252,49 +1253,23 @@ class JATSExporter {
                         }
                     });
                 }
-                const noteIDs = [];
-                for (const contributor of [...authorContributors, ...otherContributors]) {
-                    if (contributor.footnote) {
-                        const ids = contributor.footnote.map((note) => {
-                            return note.noteID;
-                        });
-                        noteIDs.push(...ids);
-                    }
-                    if (contributor.corresp) {
-                        const ids = contributor.corresp.map((corresp) => {
-                            return corresp.correspID;
-                        });
-                        noteIDs.push(...ids);
-                    }
-                }
-                const footnotes = [];
-                footnotes.push(...this.models.filter((0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Footnote)));
-                const correspodings = [];
-                correspodings.push(...this.models.filter((0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Corresponding)));
-                if (footnotes || correspodings) {
+                const authorNotes = this.models.find((0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.AuthorNotes));
+                if (authorNotes) {
                     const authorNotesEl = this.document.createElement('author-notes');
-                    const usedFootnotes = footnotes.filter((footnote) => {
-                        return noteIDs.includes(footnote._id);
-                    });
-                    const usedCorrespodings = correspodings.filter((corresp) => {
-                        return noteIDs.includes(corresp._id);
-                    });
-                    usedFootnotes.forEach((footnote) => {
-                        const authorFootNote = this.document.createElement('fn');
-                        authorFootNote.setAttribute('id', normalizeID(footnote._id));
-                        authorFootNote.innerHTML = footnote.contents;
-                        authorNotesEl.appendChild(authorFootNote);
-                    });
-                    usedCorrespodings.forEach((corresponding) => {
-                        const correspondingEl = this.document.createElement('corresp');
-                        correspondingEl.setAttribute('id', normalizeID(corresponding._id));
-                        if (corresponding.label) {
-                            const labelEl = this.document.createElement('label');
-                            labelEl.textContent = corresponding.label;
-                            correspondingEl.appendChild(labelEl);
+                    authorNotes.containedObjectIDs.forEach((id) => {
+                        const model = this.modelMap.get(id);
+                        if (!model) {
+                            return;
+                        }
+                        if (id.startsWith('MPParagraphElement')) {
+                            this.appendParagraphToElement(model, authorNotesEl);
+                        }
+                        else if (id.startsWith('MPCorresponding')) {
+                            this.appendCorrespondingToElement(model, authorNotesEl);
+                        }
+                        else if (id.startsWith('MPFootnote')) {
+                            this.appendFootnoteToElement(model, authorNotesEl);
                         }
-                        correspondingEl.append(corresponding.contents);
-                        authorNotesEl.appendChild(correspondingEl);
                     });
                     if (authorNotesEl.childNodes.length > 0) {
                         articleMeta.insertBefore(authorNotesEl, contribGroup.nextSibling);
@@ -1302,6 +1277,29 @@ class JATSExporter {
                 }
             }
         };
+        this.appendParagraphToElement = (paragraph, element) => {
+            const paragraphEl = this.document.createElement('p');
+            paragraphEl.setAttribute('id', normalizeID(paragraph._id));
+            paragraphEl.innerHTML = paragraph.contents;
+            element.appendChild(paragraphEl);
+        };
+        this.appendCorrespondingToElement = (corresponding, element) => {
+            const correspondingEl = this.document.createElement('corresp');
+            correspondingEl.setAttribute('id', normalizeID(corresponding._id));
+            if (corresponding.label) {
+                const labelEl = this.document.createElement('label');
+                labelEl.textContent = corresponding.label;
+                correspondingEl.appendChild(labelEl);
+            }
+            correspondingEl.append(corresponding.contents);
+            element.appendChild(correspondingEl);
+        };
+        this.appendFootnoteToElement = (footnote, element) => {
+            const footnoteEl = this.document.createElement('fn');
+            footnoteEl.setAttribute('id', normalizeID(footnote._id));
+            footnoteEl.innerHTML = footnote.contents;
+            element.appendChild(footnoteEl);
+        };
         this.fixBody = (body, fragment) => {
             fragment.descendants((node) => {
                 if (node.attrs.id) {

package/dist/cjs/schema/index.js

@@ -36,6 +36,7 @@ const abstracts_1 = require("./nodes/abstracts");
 const affiliation_1 = require("./nodes/affiliation");
 const affiliations_1 = require("./nodes/affiliations");
 const attribution_1 = require("./nodes/attribution");
+const author_notes_1 = require("./nodes/author_notes");
 const backmatter_1 = require("./nodes/backmatter");
 const bibliography_element_1 = require("./nodes/bibliography_element");
 const bibliography_item_1 = require("./nodes/bibliography_item");
@@ -230,5 +231,6 @@ exports.schema = new prosemirror_model_1.Schema({
         contributors: contributors_1.contributors,
         supplements: supplements_1.supplements,
         supplement: supplement_1.supplement,
+        author_notes: author_notes_1.authorNotes,
     },
 });

package/dist/cjs/schema/nodes/author_notes.js

@@ -0,0 +1,27 @@
+"use strict";
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.authorNotes = void 0;
+exports.authorNotes = {
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+    },
+    content: '(footnote | paragraph)+',
+    group: 'block element',
+    toDOM: () => ['author-notes', 0],
+};

package/dist/cjs/schema/nodes/contributors.js

@@ -17,7 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.contributors = void 0;
 exports.contributors = {
-    content: 'contributor*',
+    content: 'contributor* author_notes',
     attrs: {
         id: { default: '' },
     },

package/dist/cjs/transformer/builders.js

@@ -18,7 +18,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildInlineMathFragment = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
+exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildAuthorNotes = exports.buildFootnote = exports.buildInlineMathFragment = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
 const schema_1 = require("../schema");
@@ -130,11 +130,16 @@ const buildFootnote = (containingObject, contents, kind = 'footnote') => ({
     kind,
 });
 exports.buildFootnote = buildFootnote;
-const buildFootnotesOrder = (footnotesList, containedObjectID) => ({
+const buildAuthorNotes = (containedObjectIDs) => ({
+    _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.AuthorNotes),
+    objectType: json_schema_1.ObjectTypes.AuthorNotes,
+    containedObjectIDs: containedObjectIDs,
+});
+exports.buildAuthorNotes = buildAuthorNotes;
+const buildFootnotesOrder = (footnotesList) => ({
     _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.FootnotesOrder),
     objectType: json_schema_1.ObjectTypes.FootnotesOrder,
     footnotesList,
-    containedObjectID,
 });
 exports.buildFootnotesOrder = buildFootnotesOrder;
 const buildCorresp = (contents) => ({

package/dist/cjs/transformer/decode.js

@@ -62,12 +62,14 @@ const sortSectionsByPriority = (a, b) => a.priority === b.priority ? 0 : Number(
 exports.sortSectionsByPriority = sortSectionsByPriority;
 const getSections = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Section).sort(exports.sortSectionsByPriority);
 const getAffiliations = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Affiliation);
+const getAuthorNotes = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.AuthorNotes);
 const getContributors = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Contributor);
 const getKeywordElements = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.KeywordsElement);
 const getSupplements = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Supplement);
 const getKeywordGroups = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.KeywordGroup);
 const getKeywords = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Keyword);
 const getTitles = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Titles)[0];
+const isFootnote = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Footnote);
 const hasParentSection = (id) => (section) => section.path &&
     section.path.length > 1 &&
     section.path[section.path.length - 2] === id;
@@ -91,7 +93,11 @@ class Decoder {
         const contributors = getContributors(this.modelMap)
             .map((c) => this.decode(c))
             .filter(Boolean);
-        return schema_1.schema.nodes.contributors.createAndFill({}, contributors);
+        const authorNotes = getAuthorNotes(this.modelMap)
+            .map((authorNote) => this.decode(authorNote))
+            .filter(Boolean);
+        const content = [...contributors, ...authorNotes];
+        return schema_1.schema.nodes.contributors.createAndFill({}, content);
     }
     createKeywordsNode() {
         const elements = getKeywordElements(this.modelMap)
@@ -310,25 +316,23 @@ class Decoder {
             },
             [json_schema_1.ObjectTypes.FootnotesElement]: (data) => {
                 const foonotesElementModel = data;
+                const collateByKind = foonotesElementModel.collateByKind || 'footnote';
                 const footnotesOfKind = [];
-                const footnoteOrder = (0, exports.getModelsByType)(this.modelMap, json_schema_1.ObjectTypes.FootnotesOrder).find((model) => model.containedObjectID === data._id);
-                if (footnoteOrder) {
-                    footnoteOrder.footnotesList.map(({ id }) => {
-                        const model = this.modelMap.get(id);
-                        const collateByKind = foonotesElementModel.collateByKind || 'footnote';
-                        if (model.kind === collateByKind) {
-                            const comments = this.createCommentNodes(model);
-                            comments.forEach((c) => this.comments.set(c.attrs.id, c));
-                            const footnote = this.parseContents(model.contents || '<div></div>', undefined, this.getComments(model), {
-                                topNode: schema_1.schema.nodes.footnote.create({
-                                    id: model._id,
-                                    kind: model.kind,
-                                    comments: comments.map((c) => c.attrs.id),
-                                }),
-                            });
-                            footnotesOfKind.push(footnote);
-                        }
-                    });
+                for (const model of this.modelMap.values()) {
+                    if (isFootnote(model) &&
+                        model.kind === collateByKind &&
+                        model.containingObject === foonotesElementModel._id) {
+                        const comments = this.createCommentNodes(model);
+                        comments.forEach((c) => this.comments.set(c.attrs.id, c));
+                        const footnote = this.parseContents(model.contents || '<div></div>', undefined, this.getComments(model), {
+                            topNode: schema_1.schema.nodes.footnote.create({
+                                id: model._id,
+                                kind: model.kind,
+                                comments: comments.map((c) => c.attrs.id),
+                            }),
+                        });
+                        footnotesOfKind.push(footnote);
+                    }
                 }
                 return schema_1.schema.nodes.footnotes_element.create({
                     id: foonotesElementModel._id,
@@ -492,6 +496,13 @@ class Decoder {
                     id: model._id,
                 }, content);
             },
+            [json_schema_1.ObjectTypes.AuthorNotes]: (data) => {
+                const model = data;
+                const content = model.containedObjectIDs.map((id) => this.decode(this.modelMap.get(id)));
+                return schema_1.schema.nodes.author_notes.create({
+                    id: model._id,
+                }, content);
+            },
             [json_schema_1.ObjectTypes.Section]: (data) => {
                 const model = data;
                 const elements = [];

package/dist/cjs/transformer/encode.js

@@ -395,6 +395,9 @@ const encoders = {
     table_element_footer: (node) => ({
         containedObjectIDs: containedObjectIDs(node),
     }),
+    author_notes: (node) => ({
+        containedObjectIDs: containedObjectIDs(node),
+    }),
     footnotes_section: (node, parent, path, priority) => ({
         category: (0, section_category_1.buildSectionCategory)(node),
         priority: priority.value++,
@@ -596,9 +599,6 @@ const encode = (node) => {
             child.type !== schema_1.schema.nodes.inline_equation) {
             return;
         }
-        if (child.type === schema_1.schema.nodes.footnotes_element) {
-            addFootnotesOrderModel(child, models);
-        }
         const { model, markers } = (0, exports.modelFromNode)(child, parent, path, priority);
         markers.forEach((marker) => {
             const comment = models.get(marker._id);
@@ -650,9 +650,3 @@ const generateElementOrder = (node, nodeType) => {
     order.elements = ids;
     return order;
 };
-const addFootnotesOrderModel = (child, models) => {
-    const footnoteList = [];
-    child.forEach((footnote, _, index) => footnoteList.push({ id: footnote.attrs.id, index }));
-    const footnotesOrder = (0, builders_1.buildFootnotesOrder)(footnoteList, child.attrs.id);
-    models.set(footnotesOrder._id, footnotesOrder);
-};

package/dist/cjs/transformer/footnotes-order.js

@@ -15,7 +15,8 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.handleFootnotesOrder = exports.createOrderedFootnotesIDs = void 0;
+exports.createEmptyFootnotesOrder = exports.handleFootnotesOrder = exports.createOrderedFootnotesIDs = void 0;
+const builders_1 = require("./builders");
 const createOrderedFootnotesIDs = (doc) => {
     const footnotesRefs = [...doc.querySelectorAll('xref[ref-type="fn"][rid]')];
     const footnotes = [...doc.querySelectorAll('fn:not([fn-type])')];
@@ -58,3 +59,5 @@ const handleFootnotesOrder = (orderedFootnotesIDs, replacements, footnotesOrder)
     footnotesOrder.footnotesList = footnotesList;
 };
 exports.handleFootnotesOrder = handleFootnotesOrder;
+const createEmptyFootnotesOrder = () => (0, builders_1.buildFootnotesOrder)([]);
+exports.createEmptyFootnotesOrder = createEmptyFootnotesOrder;

package/dist/cjs/transformer/node-types.js

@@ -62,6 +62,8 @@ exports.nodeTypesMap = new Map([
     [schema_1.schema.nodes.affiliations, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.title, json_schema_1.ObjectTypes.Titles],
     [schema_1.schema.nodes.supplement, json_schema_1.ObjectTypes.Supplement],
+    [schema_1.schema.nodes.author_notes, json_schema_1.ObjectTypes.AuthorNotes],
+    [schema_1.schema.nodes.corresp, json_schema_1.ObjectTypes.Corresponding],
 ]);
 const isExecutableNodeType = (type) => (0, schema_1.hasGroup)(type, schema_1.GROUP_EXECUTABLE);
 exports.isExecutableNodeType = isExecutableNodeType;

package/dist/es/jats/importer/jats-body-transformations.js

@@ -262,16 +262,6 @@ export const jatsBodyTransformations = {
             }
         });
     },
-    orderTableFootnote(doc, body) {
-        const tableInlineFootnotesIds = new Set(Array.from(body.querySelectorAll('tbody > tr > td > xref[ref-type="fn"]').values()).map((inlineFootnote) => inlineFootnote.getAttribute('rid')));
-        const fnGroups = doc.querySelectorAll('table-wrap-foot > fn-group');
-        fnGroups.forEach((fnGroup) => {
-            const orderedFootnotes = Array.from(fnGroup.querySelectorAll('fn')).sort((fn) => tableInlineFootnotesIds.has(fn.getAttribute('id'))
-                ? -1
-                : 0);
-            fnGroup.replaceChildren(...orderedFootnotes);
-        });
-    },
     moveFloatsGroupToBody(doc, body, createElement) {
         const group = doc.querySelector('floats-group');
         if (group) {

package/dist/es/jats/importer/jats-front-parser.js

@@ -15,7 +15,7 @@
  */
 import debug from 'debug';
 import { getTrimmedTextContent } from '../../lib/utils';
-import { buildAffiliation, buildBibliographicName, buildContributor, buildCorresp, buildFootnote, buildJournal, buildTitles, } from '../../transformer';
+import { buildAffiliation, buildBibliographicName, buildContributor, buildCorresp, buildFootnote, buildJournal, buildParagraph, buildTitles, } from '../../transformer';
 import { parseJournalMeta } from './jats-journal-meta-parser';
 import { htmlFromJatsNode } from './jats-parser-utils';
 const warn = debug('manuscripts-transform');
@@ -183,6 +183,13 @@ export const jatsFrontParser = {
             footnoteIDs,
         };
     },
+    parseAuthorNotesParagraphs(elements) {
+        const paragraphs = [];
+        elements.forEach((p) => {
+            paragraphs.push(buildParagraph(p.innerHTML));
+        });
+        return paragraphs;
+    },
     parseCorresp(elements) {
         const correspondingIDs = new Map();
         const correspondingList = elements.map((element) => {

package/dist/es/jats/importer/parse-jats-article.js

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 import { InvalidInput } from '../../errors';
-import { buildBibliographyElement, buildSection, encode, } from '../../transformer';
+import { buildAuthorNotes, buildBibliographyElement, buildSection, encode, } from '../../transformer';
 import { buildManuscript } from '../../transformer/builders';
 import { generateID } from '../../transformer/id';
 import { findManuscript } from '../../transformer/project-bundle';
@@ -37,6 +37,10 @@ export const parseJATSFront = (doc, front) => {
     const { correspondingList, correspondingIDs } = jatsFrontParser.parseCorresp([
         ...front.querySelectorAll('article-meta > author-notes > corresp'),
     ]);
+    const authorNotesParagraphs = jatsFrontParser.parseAuthorNotesParagraphs([
+        ...front.querySelectorAll('article-meta > author-notes > p'),
+    ]);
+    const authorNotes = buildAuthorNotes(Array.from(footnoteIDs.values()).concat(authorNotesParagraphs.map((p) => p._id)));
     const authors = jatsFrontParser.parseContributors([
         ...front.querySelectorAll('article-meta > contrib-group > contrib[contrib-type="author"]'),
     ], affiliationIDs, footnoteIDs, correspondingIDs);
@@ -47,6 +51,8 @@ export const parseJATSFront = (doc, front) => {
         manuscript,
         titles,
         journal,
+        ...authorNotesParagraphs,
+        authorNotes,
         ...footnotes,
         ...authors,
         ...affiliations,
@@ -63,7 +69,6 @@ export const parseJATSBody = (doc, body, references) => {
     jatsBodyTransformations.createBackmatter(doc, body, createElement);
     jatsBodyTransformations.createSuppleMaterials(doc, body, createElement);
     jatsBodyTransformations.createKeywords(doc, body, createElement);
-    jatsBodyTransformations.orderTableFootnote(doc, body);
     const node = jatsBodyDOMParser.parse(body).firstChild;
     if (!node) {
         throw new Error('No content was parsed from the JATS article body');

package/dist/es/jats/jats-exporter.js

@@ -606,6 +606,7 @@ export class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
+                author_notes: () => ['author-notes', 0],
                 title: () => '',
                 affiliations: () => '',
                 contributors: () => '',
@@ -1244,49 +1245,23 @@ export class JATSExporter {
                         }
                     });
                 }
-                const noteIDs = [];
-                for (const contributor of [...authorContributors, ...otherContributors]) {
-                    if (contributor.footnote) {
-                        const ids = contributor.footnote.map((note) => {
-                            return note.noteID;
-                        });
-                        noteIDs.push(...ids);
-                    }
-                    if (contributor.corresp) {
-                        const ids = contributor.corresp.map((corresp) => {
-                            return corresp.correspID;
-                        });
-                        noteIDs.push(...ids);
-                    }
-                }
-                const footnotes = [];
-                footnotes.push(...this.models.filter(hasObjectType(ObjectTypes.Footnote)));
-                const correspodings = [];
-                correspodings.push(...this.models.filter(hasObjectType(ObjectTypes.Corresponding)));
-                if (footnotes || correspodings) {
+                const authorNotes = this.models.find(hasObjectType(ObjectTypes.AuthorNotes));
+                if (authorNotes) {
                     const authorNotesEl = this.document.createElement('author-notes');
-                    const usedFootnotes = footnotes.filter((footnote) => {
-                        return noteIDs.includes(footnote._id);
-                    });
-                    const usedCorrespodings = correspodings.filter((corresp) => {
-                        return noteIDs.includes(corresp._id);
-                    });
-                    usedFootnotes.forEach((footnote) => {
-                        const authorFootNote = this.document.createElement('fn');
-                        authorFootNote.setAttribute('id', normalizeID(footnote._id));
-                        authorFootNote.innerHTML = footnote.contents;
-                        authorNotesEl.appendChild(authorFootNote);
-                    });
-                    usedCorrespodings.forEach((corresponding) => {
-                        const correspondingEl = this.document.createElement('corresp');
-                        correspondingEl.setAttribute('id', normalizeID(corresponding._id));
-                        if (corresponding.label) {
-                            const labelEl = this.document.createElement('label');
-                            labelEl.textContent = corresponding.label;
-                            correspondingEl.appendChild(labelEl);
+                    authorNotes.containedObjectIDs.forEach((id) => {
+                        const model = this.modelMap.get(id);
+                        if (!model) {
+                            return;
+                        }
+                        if (id.startsWith('MPParagraphElement')) {
+                            this.appendParagraphToElement(model, authorNotesEl);
+                        }
+                        else if (id.startsWith('MPCorresponding')) {
+                            this.appendCorrespondingToElement(model, authorNotesEl);
+                        }
+                        else if (id.startsWith('MPFootnote')) {
+                            this.appendFootnoteToElement(model, authorNotesEl);
                         }
-                        correspondingEl.append(corresponding.contents);
-                        authorNotesEl.appendChild(correspondingEl);
                     });
                     if (authorNotesEl.childNodes.length > 0) {
                         articleMeta.insertBefore(authorNotesEl, contribGroup.nextSibling);
@@ -1294,6 +1269,29 @@ export class JATSExporter {
                 }
             }
         };
+        this.appendParagraphToElement = (paragraph, element) => {
+            const paragraphEl = this.document.createElement('p');
+            paragraphEl.setAttribute('id', normalizeID(paragraph._id));
+            paragraphEl.innerHTML = paragraph.contents;
+            element.appendChild(paragraphEl);
+        };
+        this.appendCorrespondingToElement = (corresponding, element) => {
+            const correspondingEl = this.document.createElement('corresp');
+            correspondingEl.setAttribute('id', normalizeID(corresponding._id));
+            if (corresponding.label) {
+                const labelEl = this.document.createElement('label');
+                labelEl.textContent = corresponding.label;
+                correspondingEl.appendChild(labelEl);
+            }
+            correspondingEl.append(corresponding.contents);
+            element.appendChild(correspondingEl);
+        };
+        this.appendFootnoteToElement = (footnote, element) => {
+            const footnoteEl = this.document.createElement('fn');
+            footnoteEl.setAttribute('id', normalizeID(footnote._id));
+            footnoteEl.innerHTML = footnote.contents;
+            element.appendChild(footnoteEl);
+        };
         this.fixBody = (body, fragment) => {
             fragment.descendants((node) => {
                 if (node.attrs.id) {

package/dist/es/schema/index.js

@@ -19,6 +19,7 @@ import { abstracts } from './nodes/abstracts';
 import { affiliation } from './nodes/affiliation';
 import { affiliations } from './nodes/affiliations';
 import { attribution } from './nodes/attribution';
+import { authorNotes } from './nodes/author_notes';
 import { backmatter } from './nodes/backmatter';
 import { bibliographyElement } from './nodes/bibliography_element';
 import { bibliographyItem } from './nodes/bibliography_item';
@@ -213,5 +214,6 @@ export const schema = new Schema({
         contributors,
         supplements,
         supplement,
+        author_notes: authorNotes,
     },
 });

package/dist/es/schema/nodes/author_notes.js

@@ -0,0 +1,24 @@
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+export const authorNotes = {
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+    },
+    content: '(footnote | paragraph)+',
+    group: 'block element',
+    toDOM: () => ['author-notes', 0],
+};

package/dist/es/schema/nodes/contributors.js

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 export const contributors = {
-    content: 'contributor*',
+    content: 'contributor* author_notes',
     attrs: {
         id: { default: '' },
     },

package/dist/es/transformer/builders.js

@@ -108,11 +108,15 @@ export const buildFootnote = (containingObject, contents, kind = 'footnote') =>
     contents,
     kind,
 });
-export const buildFootnotesOrder = (footnotesList, containedObjectID) => ({
+export const buildAuthorNotes = (containedObjectIDs) => ({
+    _id: generateID(ObjectTypes.AuthorNotes),
+    objectType: ObjectTypes.AuthorNotes,
+    containedObjectIDs: containedObjectIDs,
+});
+export const buildFootnotesOrder = (footnotesList) => ({
     _id: generateID(ObjectTypes.FootnotesOrder),
     objectType: ObjectTypes.FootnotesOrder,
     footnotesList,
-    containedObjectID,
 });
 export const buildCorresp = (contents) => ({
     _id: generateID(ObjectTypes.Corresponding),

package/dist/es/transformer/decode.js

@@ -32,7 +32,7 @@ import { abstractsType, backmatterType, bodyType, } from '../lib/section-group-t
 import { schema, } from '../schema';
 import { buildTitles } from './builders';
 import { insertHighlightMarkers } from './highlight-markers';
-import { ExtraObjectTypes, isCommentAnnotation, isManuscript, } from './object-types';
+import { ExtraObjectTypes, hasObjectType, isCommentAnnotation, isManuscript, } from './object-types';
 import { chooseSectionLableName, chooseSectionNodeType, chooseSecType, getSectionGroupType, guessSectionCategory, } from './section-category';
 import { timestamp } from './timestamp';
 const warn = debug('manuscripts-transform');
@@ -53,12 +53,14 @@ export const getModelsByType = (modelMap, objectType) => {
 export const sortSectionsByPriority = (a, b) => a.priority === b.priority ? 0 : Number(a.priority) - Number(b.priority);
 const getSections = (modelMap) => getModelsByType(modelMap, ObjectTypes.Section).sort(sortSectionsByPriority);
 const getAffiliations = (modelMap) => getModelsByType(modelMap, ObjectTypes.Affiliation);
+const getAuthorNotes = (modelMap) => getModelsByType(modelMap, ObjectTypes.AuthorNotes);
 const getContributors = (modelMap) => getModelsByType(modelMap, ObjectTypes.Contributor);
 const getKeywordElements = (modelMap) => getModelsByType(modelMap, ObjectTypes.KeywordsElement);
 const getSupplements = (modelMap) => getModelsByType(modelMap, ObjectTypes.Supplement);
 const getKeywordGroups = (modelMap) => getModelsByType(modelMap, ObjectTypes.KeywordGroup);
 const getKeywords = (modelMap) => getModelsByType(modelMap, ObjectTypes.Keyword);
 const getTitles = (modelMap) => getModelsByType(modelMap, ObjectTypes.Titles)[0];
+const isFootnote = hasObjectType(ObjectTypes.Footnote);
 const hasParentSection = (id) => (section) => section.path &&
     section.path.length > 1 &&
     section.path[section.path.length - 2] === id;
@@ -82,7 +84,11 @@ export class Decoder {
         const contributors = getContributors(this.modelMap)
             .map((c) => this.decode(c))
             .filter(Boolean);
-        return schema.nodes.contributors.createAndFill({}, contributors);
+        const authorNotes = getAuthorNotes(this.modelMap)
+            .map((authorNote) => this.decode(authorNote))
+            .filter(Boolean);
+        const content = [...contributors, ...authorNotes];
+        return schema.nodes.contributors.createAndFill({}, content);
     }
     createKeywordsNode() {
         const elements = getKeywordElements(this.modelMap)
@@ -301,25 +307,23 @@ export class Decoder {
             },
             [ObjectTypes.FootnotesElement]: (data) => {
                 const foonotesElementModel = data;
+                const collateByKind = foonotesElementModel.collateByKind || 'footnote';
                 const footnotesOfKind = [];
-                const footnoteOrder = getModelsByType(this.modelMap, ObjectTypes.FootnotesOrder).find((model) => model.containedObjectID === data._id);
-                if (footnoteOrder) {
-                    footnoteOrder.footnotesList.map(({ id }) => {
-                        const model = this.modelMap.get(id);
-                        const collateByKind = foonotesElementModel.collateByKind || 'footnote';
-                        if (model.kind === collateByKind) {
-                            const comments = this.createCommentNodes(model);
-                            comments.forEach((c) => this.comments.set(c.attrs.id, c));
-                            const footnote = this.parseContents(model.contents || '<div></div>', undefined, this.getComments(model), {
-                                topNode: schema.nodes.footnote.create({
-                                    id: model._id,
-                                    kind: model.kind,
-                                    comments: comments.map((c) => c.attrs.id),
-                                }),
-                            });
-                            footnotesOfKind.push(footnote);
-                        }
-                    });
+                for (const model of this.modelMap.values()) {
+                    if (isFootnote(model) &&
+                        model.kind === collateByKind &&
+                        model.containingObject === foonotesElementModel._id) {
+                        const comments = this.createCommentNodes(model);
+                        comments.forEach((c) => this.comments.set(c.attrs.id, c));
+                        const footnote = this.parseContents(model.contents || '<div></div>', undefined, this.getComments(model), {
+                            topNode: schema.nodes.footnote.create({
+                                id: model._id,
+                                kind: model.kind,
+                                comments: comments.map((c) => c.attrs.id),
+                            }),
+                        });
+                        footnotesOfKind.push(footnote);
+                    }
                 }
                 return schema.nodes.footnotes_element.create({
                     id: foonotesElementModel._id,
@@ -483,6 +487,13 @@ export class Decoder {
                     id: model._id,
                 }, content);
             },
+            [ObjectTypes.AuthorNotes]: (data) => {
+                const model = data;
+                const content = model.containedObjectIDs.map((id) => this.decode(this.modelMap.get(id)));
+                return schema.nodes.author_notes.create({
+                    id: model._id,
+                }, content);
+            },
             [ObjectTypes.Section]: (data) => {
                 const model = data;
                 const elements = [];

package/dist/es/transformer/encode.js

@@ -17,7 +17,7 @@ import { DOMSerializer } from 'prosemirror-model';
 import serializeToXML from 'w3c-xmlserializer';
 import { iterateChildren } from '../lib/utils';
 import { hasGroup, isHighlightMarkerNode, isManuscriptNode, isSectionNode, schema, } from '../schema';
-import { auxiliaryObjectTypes, buildAttribution, buildElementsOrder, buildFootnotesOrder, } from './builders';
+import { auxiliaryObjectTypes, buildAttribution, buildElementsOrder, } from './builders';
 import { extractCommentMarkers } from './highlight-markers';
 import { nodeTypesMap } from './node-types';
 import { buildSectionCategory } from './section-category';
@@ -387,6 +387,9 @@ const encoders = {
     table_element_footer: (node) => ({
         containedObjectIDs: containedObjectIDs(node),
     }),
+    author_notes: (node) => ({
+        containedObjectIDs: containedObjectIDs(node),
+    }),
     footnotes_section: (node, parent, path, priority) => ({
         category: buildSectionCategory(node),
         priority: priority.value++,
@@ -587,9 +590,6 @@ export const encode = (node) => {
             child.type !== schema.nodes.inline_equation) {
             return;
         }
-        if (child.type === schema.nodes.footnotes_element) {
-            addFootnotesOrderModel(child, models);
-        }
         const { model, markers } = modelFromNode(child, parent, path, priority);
         markers.forEach((marker) => {
             const comment = models.get(marker._id);
@@ -640,9 +640,3 @@ const generateElementOrder = (node, nodeType) => {
     order.elements = ids;
     return order;
 };
-const addFootnotesOrderModel = (child, models) => {
-    const footnoteList = [];
-    child.forEach((footnote, _, index) => footnoteList.push({ id: footnote.attrs.id, index }));
-    const footnotesOrder = buildFootnotesOrder(footnoteList, child.attrs.id);
-    models.set(footnotesOrder._id, footnotesOrder);
-};

package/dist/es/transformer/footnotes-order.js

@@ -13,6 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
+import { buildFootnotesOrder } from './builders';
 export const createOrderedFootnotesIDs = (doc) => {
     const footnotesRefs = [...doc.querySelectorAll('xref[ref-type="fn"][rid]')];
     const footnotes = [...doc.querySelectorAll('fn:not([fn-type])')];
@@ -53,3 +54,4 @@ export const handleFootnotesOrder = (orderedFootnotesIDs, replacements, footnote
     });
     footnotesOrder.footnotesList = footnotesList;
 };
+export const createEmptyFootnotesOrder = () => buildFootnotesOrder([]);

package/dist/es/transformer/node-types.js

@@ -59,6 +59,8 @@ export const nodeTypesMap = new Map([
     [schema.nodes.affiliations, ObjectTypes.Section],
     [schema.nodes.title, ObjectTypes.Titles],
     [schema.nodes.supplement, ObjectTypes.Supplement],
+    [schema.nodes.author_notes, ObjectTypes.AuthorNotes],
+    [schema.nodes.corresp, ObjectTypes.Corresponding],
 ]);
 export const isExecutableNodeType = (type) => hasGroup(type, GROUP_EXECUTABLE);
 export const isElementNodeType = (type) => hasGroup(type, GROUP_ELEMENT);

package/dist/types/jats/importer/jats-body-transformations.d.ts

@@ -32,7 +32,6 @@ export declare const jatsBodyTransformations: {
     moveFootnotes(doc: Document, group: Element, createElement: (tagName: string) => HTMLElement): void;
     moveCaptionsToEnd(body: Element): void;
     fixTables(body: Element, createElement: (tagName: string) => HTMLElement): void;
-    orderTableFootnote(doc: Document, body: Element): void;
     moveFloatsGroupToBody(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
     createKeywords(document: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
     createSuppleMaterials(document: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;

package/dist/types/jats/importer/jats-front-parser.d.ts

@@ -13,8 +13,10 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
+import { ParagraphElement } from '@manuscripts/json-schema';
+import { Build } from '../../transformer';
 export declare const jatsFrontParser: {
-    parseTitles(element: Element | null, createElement: (tagName: string) => HTMLElement): import("../../transformer").Build<import("@manuscripts/json-schema/dist/types").Titles>;
+    parseTitles(element: Element | null, createElement: (tagName: string) => HTMLElement): Build<import("@manuscripts/json-schema").Titles>;
     parseCounts(counts: Element | null): {
         wordCount: number | undefined;
         figureCount: number | undefined;
@@ -48,7 +50,7 @@ export declare const jatsFrontParser: {
         publisherName: string | undefined;
         _id: string;
         objectType: string;
-        contributions?: import("@manuscripts/json-schema/dist/types").Contribution[] | undefined;
+        contributions?: import("@manuscripts/json-schema").Contribution[] | undefined;
     };
     parseDates(historyNode: Element | null): {
         acceptanceDate?: number | undefined;
@@ -59,16 +61,17 @@ export declare const jatsFrontParser: {
         receiveDate?: number | undefined;
     } | undefined;
     parseAffiliations(elements: Element[]): {
-        affiliations: import("../../transformer").Build<import("@manuscripts/json-schema/dist/types").Affiliation>[];
+        affiliations: Build<import("@manuscripts/json-schema").Affiliation>[];
         affiliationIDs: Map<string, string>;
     };
     parseAuthorNotes(elements: Element[]): {
-        footnotes: import("../../transformer").Build<import("@manuscripts/json-schema/dist/types").Footnote>[];
+        footnotes: Build<import("@manuscripts/json-schema").Footnote>[];
         footnoteIDs: Map<string, string>;
     };
+    parseAuthorNotesParagraphs(elements: Element[]): Build<ParagraphElement>[];
     parseCorresp(elements: Element[]): {
-        correspondingList: import("../../transformer").Build<import("@manuscripts/json-schema/dist/types").Corresponding>[];
+        correspondingList: Build<import("@manuscripts/json-schema").Corresponding>[];
         correspondingIDs: Map<string, string>;
     };
-    parseContributors(elements: Element[], affiliationIDs: Map<string, string>, footnoteIDs: Map<string, string>, correspondingIDs: Map<string, string>): import("../../transformer").Build<import("@manuscripts/json-schema/dist/types").Contributor>[];
+    parseContributors(elements: Element[], affiliationIDs: Map<string, string>, footnoteIDs: Map<string, string>, correspondingIDs: Map<string, string>): Build<import("@manuscripts/json-schema").Contributor>[];
 };

package/dist/types/jats/jats-exporter.d.ts

@@ -86,6 +86,9 @@ export declare class JATSExporter {
     protected serializeNode: (node: ManuscriptNode) => Node;
     private validateContributor;
     private buildContributors;
+    private appendParagraphToElement;
+    private appendCorrespondingToElement;
+    private appendFootnoteToElement;
     private buildKeywords;
     private fixBody;
     private changeTag;

package/dist/types/schema/nodes/author_notes.d.ts

@@ -0,0 +1,25 @@
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { NodeSpec } from 'prosemirror-model';
+import { ManuscriptNode } from '../types';
+interface Attrs {
+    id: string;
+}
+export interface AuthorNotesNode extends ManuscriptNode {
+    attrs: Attrs;
+}
+export declare const authorNotes: NodeSpec;
+export {};

package/dist/types/schema/types.d.ts

@@ -17,7 +17,7 @@ import { Fragment, Mark as ProsemirrorMark, MarkType, Node as ProsemirrorNode, N
 import { EditorState, NodeSelection, Plugin, TextSelection, Transaction } from 'prosemirror-state';
 import { EditorView, NodeView } from 'prosemirror-view';
 export type Marks = 'bold' | 'code' | 'italic' | 'smallcaps' | 'strikethrough' | 'styled' | 'subscript' | 'superscript' | 'underline' | 'tracked_insert' | 'tracked_delete';
-export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comments' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keyword_group' | 'keywords' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'abstracts' | 'body' | 'backmatter' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'contributor' | 'table_element_footer' | 'title' | 'affiliations' | 'contributors' | 'supplements' | 'supplement';
+export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comments' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keyword_group' | 'keywords' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'abstracts' | 'body' | 'backmatter' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'contributor' | 'table_element_footer' | 'title' | 'affiliations' | 'contributors' | 'supplements' | 'supplement' | 'author_notes';
 export type ManuscriptSchema = Schema<Nodes, Marks>;
 export type ManuscriptEditorState = EditorState;
 export type ManuscriptEditorView = EditorView;

package/dist/types/transformer/builders.d.ts

@@ -13,7 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-import { Affiliation, Attribution, BibliographicDate, BibliographicName, BibliographyElement, BibliographyItem, Color, CommentAnnotation, Contribution, Contributor, ContributorRole, Corresponding, ElementsOrder, EmbeddedModel, Figure, Footnote, FootnotesOrder, InlineMathFragment, Journal, Keyword, KeywordGroup, Manuscript, ManuscriptNote, ObjectTypes, ParagraphElement, Project, Section, Supplement, Titles } from '@manuscripts/json-schema';
+import { Affiliation, Attribution, AuthorNotes, BibliographicDate, BibliographicName, BibliographyElement, BibliographyItem, Color, CommentAnnotation, Contribution, Contributor, ContributorRole, Corresponding, ElementsOrder, EmbeddedModel, Figure, Footnote, FootnotesOrder, InlineMathFragment, Journal, Keyword, KeywordGroup, Manuscript, ManuscriptNote, ObjectTypes, ParagraphElement, Project, Section, Supplement, Titles } from '@manuscripts/json-schema';
 import { FootnotesOrderIndexList } from './footnotes-order';
 import { CommentSelector, ManuscriptModel, ModelAttachment } from './models';
 export type Build<T> = Pick<T, Exclude<keyof T, keyof ManuscriptModel>> & {
@@ -46,7 +46,8 @@ export declare const buildComment: (target: string, contents?: string, selector?
 export declare const buildNote: (target: string, source: 'EMAIL' | 'EDITOR' | 'DASHBOARD', contents?: string) => Build<ManuscriptNote>;
 export declare const buildInlineMathFragment: (containingObject: string, TeXRepresentation: string) => Build<InlineMathFragment>;
 export declare const buildFootnote: (containingObject: string, contents: string, kind?: 'footnote' | 'endnote') => Build<Footnote>;
-export declare const buildFootnotesOrder: (footnotesList: FootnotesOrderIndexList, containedObjectID: string) => Build<FootnotesOrder>;
+export declare const buildAuthorNotes: (containedObjectIDs: string[]) => Build<AuthorNotes>;
+export declare const buildFootnotesOrder: (footnotesList: FootnotesOrderIndexList) => Build<FootnotesOrder>;
 export declare const buildCorresp: (contents: string) => Build<Corresponding>;
 export declare const buildSection: (priority?: number, path?: string[]) => Build<Section>;
 export declare const buildParagraph: (placeholderInnerHTML: string) => Build<ParagraphElement>;

package/dist/types/transformer/footnotes-order.d.ts

@@ -20,3 +20,4 @@ export type FootnotesOrderIndexList = {
 }[];
 export declare const createOrderedFootnotesIDs: (doc: Document) => string[];
 export declare const handleFootnotesOrder: (orderedFootnotesIDs: Array<string>, replacements: Map<string, string>, footnotesOrder: FootnotesOrder) => void;
+export declare const createEmptyFootnotesOrder: () => import("./builders").Build<FootnotesOrder>;

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "2.1.1-LEAN-3377-2",
+  "version": "2.1.1-LEAN-3376-0",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",
@@ -29,8 +29,8 @@
     "version": "yarn build"
   },
   "dependencies": {
-    "@manuscripts/json-schema": "2.2.3-LEAN-3377-0",
-    "@manuscripts/library": "1.3.2-LEAN-3377-0",
+    "@manuscripts/json-schema": "2.2.3-LEAN-3376-2",
+    "@manuscripts/library": "1.3.2-LEAN-3376-1",
     "debug": "^4.3.4",
     "jszip": "^3.10.1",
     "mathjax-full": "^3.2.2",