@manuscripts/transform 2.1.1-LEAN-3336-0 → 2.1.1-LEAN-3095

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. package/dist/cjs/index.js +0 -1
  2. package/dist/cjs/jats/importer/jats-body-dom-parser.js +25 -73
  3. package/dist/cjs/jats/jats-exporter.js +17 -42
  4. package/dist/cjs/schema/index.js +0 -2
  5. package/dist/cjs/schema/nodes/equation.js +12 -14
  6. package/dist/cjs/schema/nodes/equation_element.js +4 -5
  7. package/dist/cjs/schema/nodes/inline_equation.js +12 -16
  8. package/dist/cjs/schema/nodes/table_row.js +6 -58
  9. package/dist/cjs/transformer/builders.js +1 -8
  10. package/dist/cjs/transformer/decode.js +4 -8
  11. package/dist/cjs/transformer/encode.js +4 -26
  12. package/dist/cjs/transformer/node-types.js +0 -1
  13. package/dist/cjs/transformer/object-types.js +0 -1
  14. package/dist/es/index.js +0 -1
  15. package/dist/es/jats/importer/jats-body-dom-parser.js +26 -74
  16. package/dist/es/jats/jats-exporter.js +17 -42
  17. package/dist/es/schema/index.js +1 -3
  18. package/dist/es/schema/nodes/equation.js +12 -14
  19. package/dist/es/schema/nodes/equation_element.js +4 -5
  20. package/dist/es/schema/nodes/inline_equation.js +12 -16
  21. package/dist/es/schema/nodes/table_row.js +5 -57
  22. package/dist/es/transformer/builders.js +0 -6
  23. package/dist/es/transformer/decode.js +4 -8
  24. package/dist/es/transformer/encode.js +4 -26
  25. package/dist/es/transformer/node-types.js +0 -1
  26. package/dist/es/transformer/object-types.js +0 -1
  27. package/dist/types/index.d.ts +0 -1
  28. package/dist/types/schema/index.d.ts +0 -1
  29. package/dist/types/schema/nodes/equation.d.ts +3 -4
  30. package/dist/types/schema/nodes/equation_element.d.ts +1 -2
  31. package/dist/types/schema/nodes/inline_equation.d.ts +4 -4
  32. package/dist/types/schema/nodes/table_row.d.ts +0 -1
  33. package/dist/types/schema/types.d.ts +1 -1
  34. package/dist/types/transformer/builders.d.ts +1 -2
  35. package/package.json +3 -4
  36. package/dist/cjs/mathjax/index.js +0 -41
  37. package/dist/cjs/mathjax/mathjax-packages.js +0 -20
  38. package/dist/cjs/mathjax/mathml-to-svg.js +0 -70
  39. package/dist/cjs/mathjax/tex-to-mathml.js +0 -49
  40. package/dist/cjs/mathjax/tex-to-svg.js +0 -59
  41. package/dist/es/mathjax/index.js +0 -12
  42. package/dist/es/mathjax/mathjax-packages.js +0 -17
  43. package/dist/es/mathjax/mathml-to-svg.js +0 -66
  44. package/dist/es/mathjax/tex-to-mathml.js +0 -45
  45. package/dist/es/mathjax/tex-to-svg.js +0 -55
  46. package/dist/types/mathjax/index.d.ts +0 -3
  47. package/dist/types/mathjax/mathjax-packages.d.ts +0 -16
  48. package/dist/types/mathjax/mathml-to-svg.d.ts +0 -17
  49. package/dist/types/mathjax/tex-to-mathml.d.ts +0 -17
  50. package/dist/types/mathjax/tex-to-svg.d.ts +0 -17
package/dist/cjs/index.js CHANGED
@@ -18,7 +18,6 @@ exports.isSectionLabelNode = void 0;
18
18
  __exportStar(require("./lib/section-group-type"), exports);
19
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  __exportStar(require("./lib/table-cell-styles"), exports);
20
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  __exportStar(require("./lib/utils"), exports);
21
- __exportStar(require("./mathjax"), exports);
22
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  __exportStar(require("./schema"), exports);
23
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  __exportStar(require("./transformer"), exports);
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  __exportStar(require("./jats"), exports);
@@ -21,8 +21,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
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  exports.jatsBodyDOMParser = void 0;
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  const mime_1 = __importDefault(require("mime"));
23
23
  const prosemirror_model_1 = require("prosemirror-model");
24
- const mathml_to_svg_1 = require("../../mathjax/mathml-to-svg");
25
- const tex_to_svg_1 = require("../../mathjax/tex-to-svg");
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24
  const schema_1 = require("../../schema");
27
25
  const transformer_1 = require("../../transformer");
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  const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
@@ -39,6 +37,24 @@ const chooseContentType = (graphicNode) => {
39
37
  }
40
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  }
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  };
40
+ const getEquationContent = (p) => {
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+ var _a;
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+ const element = p;
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+ const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
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+ let contents = '';
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+ let format = '';
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+ for (const child of container.childNodes) {
47
+ const nodeName = child.nodeName.replace(/^[a-z]:/, '');
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+ switch (nodeName) {
49
+ case 'tex-math':
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+ case 'mml:math':
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+ contents = child.outerHTML;
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+ format = nodeName === 'tex-math' ? 'tex' : 'mathml';
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+ break;
54
+ }
55
+ }
56
+ return { format, contents };
57
+ };
42
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  const marks = [
43
59
  {
44
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  tag: 'bold',
@@ -147,91 +163,27 @@ const nodes = [
147
163
  tag: 'inline-formula',
148
164
  node: 'inline_equation',
149
165
  getAttrs: (node) => {
150
- var _a, _b, _c, _d, _e;
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166
  const element = node;
152
- const attrs = {
153
- id: element.getAttribute('id'),
154
- MathMLRepresentation: '',
155
- SVGRepresentation: '',
156
- TeXRepresentation: '',
157
- };
158
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
159
- for (const child of container.childNodes) {
160
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
161
- switch (nodeName) {
162
- case 'tex-math':
163
- attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
164
- if (attrs.TeXRepresentation) {
165
- attrs.SVGRepresentation =
166
- (_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
167
- }
168
- break;
169
- case 'mml:math':
170
- ;
171
- child.removeAttribute('id');
172
- attrs.MathMLRepresentation = transformer_1.xmlSerializer.serializeToString(child);
173
- if (attrs.MathMLRepresentation) {
174
- attrs.SVGRepresentation =
175
- (_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLRepresentation, true)) !== null && _e !== void 0 ? _e : '';
176
- }
177
- break;
178
- }
179
- }
180
- return attrs;
167
+ return getEquationContent(element);
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168
  },
182
169
  },
183
170
  {
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171
  tag: 'disp-formula',
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172
  node: 'equation_element',
186
173
  getAttrs: (node) => {
174
+ var _a, _b;
187
175
  const element = node;
188
- const caption = element.querySelector('figcaption');
189
176
  return {
190
177
  id: element.getAttribute('id'),
191
- suppressCaption: !caption,
178
+ label: (_b = (_a = element.querySelector('label')) === null || _a === void 0 ? void 0 : _a.textContent) !== null && _b !== void 0 ? _b : '',
192
179
  };
193
180
  },
194
181
  getContent: (node, schema) => {
195
- var _a, _b, _c, _d, _e;
196
182
  const element = node;
197
- const attrs = {
198
- MathMLStringRepresentation: '',
199
- SVGStringRepresentation: '',
200
- TeXRepresentation: '',
201
- };
202
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
203
- for (const child of container.childNodes) {
204
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
205
- switch (nodeName) {
206
- case 'tex-math':
207
- attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
208
- if (attrs.TeXRepresentation) {
209
- attrs.SVGStringRepresentation =
210
- (_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
211
- }
212
- break;
213
- case 'mml:math':
214
- ;
215
- child.removeAttribute('id');
216
- attrs.MathMLStringRepresentation =
217
- transformer_1.xmlSerializer.serializeToString(child);
218
- if (attrs.MathMLStringRepresentation) {
219
- attrs.SVGStringRepresentation =
220
- (_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLStringRepresentation, true)) !== null && _e !== void 0 ? _e : '';
221
- }
222
- break;
223
- }
224
- }
225
- const caption = element.querySelector('figcaption');
226
- const figcaption = schema.nodes.figcaption.create();
183
+ const attrs = getEquationContent(element);
184
+ const id = element.getAttribute('id');
227
185
  return prosemirror_model_1.Fragment.from([
228
- schema.nodes.equation.createChecked(attrs),
229
- caption
230
- ?
231
- exports.jatsBodyDOMParser.parse(caption, {
232
- topNode: figcaption,
233
- })
234
- : figcaption,
186
+ schema.nodes.equation.createChecked(Object.assign({ id }, attrs)),
235
187
  ]);
236
188
  },
237
189
  },
@@ -568,7 +520,7 @@ const nodes = [
568
520
  },
569
521
  {
570
522
  tag: 'th',
571
- node: 'table_header',
523
+ node: 'table_cell',
572
524
  getAttrs: (node) => {
573
525
  const element = node;
574
526
  const colspan = element.getAttribute('colspan');
@@ -164,6 +164,7 @@ class JATSExporter {
164
164
  };
165
165
  this.nodeFromJATS = (JATSFragment) => {
166
166
  JATSFragment = JATSFragment.trim();
167
+ JATSFragment = JATSFragment.replace(' ', ' ');
167
168
  if (!JATSFragment.length) {
168
169
  return null;
169
170
  }
@@ -614,11 +615,6 @@ class JATSExporter {
614
615
  this.createSerializer = () => {
615
616
  const getModel = (id) => id ? this.modelMap.get(id) : undefined;
616
617
  const nodes = {
617
- table_header: (node) => [
618
- node.attrs.celltype,
619
- Object.assign(Object.assign({ valign: node.attrs.valign, align: node.attrs.align, scope: node.attrs.scope, style: node.attrs.style }, (node.attrs.rowspan > 1 && { rowspan: node.attrs.rowspan })), (node.attrs.colspan > 1 && { colspan: node.attrs.colspan })),
620
- 0,
621
- ],
622
618
  title: () => '',
623
619
  affiliations: () => '',
624
620
  contributors: () => '',
@@ -691,22 +687,23 @@ class JATSExporter {
691
687
  },
692
688
  doc: () => '',
693
689
  equation: (node) => {
694
- const formula = this.document.createElement('disp-formula');
695
- formula.setAttribute('id', normalizeID(node.attrs.id));
696
- if (node.attrs.TeXRepresentation) {
697
- const math = this.document.createElement('tex-math');
698
- math.textContent = node.attrs.TeXRepresentation;
699
- formula.appendChild(math);
700
- }
701
- else if (node.attrs.MathMLStringRepresentation) {
702
- const math = this.nodeFromJATS(node.attrs.MathMLStringRepresentation);
703
- if (math) {
704
- formula.appendChild(math);
705
- }
706
- }
707
- return formula;
690
+ const math = this.nodeFromJATS(node.attrs.contents);
691
+ const mathEl = math;
692
+ mathEl.setAttribute('id', normalizeID(node.attrs.id));
693
+ return mathEl;
694
+ },
695
+ inline_equation: (node) => {
696
+ const eqElement = this.document.createElement('inline-formula');
697
+ const math = this.nodeFromJATS(node.attrs.contents);
698
+ eqElement.append(math);
699
+ return eqElement;
700
+ },
701
+ equation_element: (node) => {
702
+ const eqElement = this.document.createElement('disp-formula');
703
+ eqElement.setAttribute('id', normalizeID(node.attrs.id));
704
+ processChildNodes(eqElement, node, schema_1.schema.nodes.equation);
705
+ return eqElement;
708
706
  },
709
- equation_element: (node) => createFigureElement(node, 'fig', node.type.schema.nodes.equation, 'equation'),
710
707
  figcaption: (node) => {
711
708
  if (!node.textContent) {
712
709
  return '';
@@ -756,28 +753,6 @@ class JATSExporter {
756
753
  },
757
754
  hard_break: () => '',
758
755
  highlight_marker: () => '',
759
- inline_equation: (node) => {
760
- const formula = this.document.createElement('inline-formula');
761
- formula.setAttribute('id', normalizeID(node.attrs.id));
762
- if (node.attrs.TeXRepresentation) {
763
- const math = this.document.createElement('tex-math');
764
- math.textContent = node.attrs.TeXRepresentation;
765
- formula.appendChild(math);
766
- }
767
- else if (node.attrs.MathMLRepresentation) {
768
- const math = this.nodeFromJATS(node.attrs.MathMLRepresentation);
769
- if (math) {
770
- formula.appendChild(math);
771
- }
772
- }
773
- else if (node.attrs.SVGRepresentation) {
774
- const math = this.nodeFromJATS(node.attrs.SVGRepresentation);
775
- if (math) {
776
- formula.appendChild(math);
777
- }
778
- }
779
- return formula;
780
- },
781
756
  inline_footnote: (node) => {
782
757
  const xref = this.document.createElement('xref');
783
758
  xref.setAttribute('ref-type', 'fn');
@@ -117,7 +117,6 @@ __exportStar(require("./nodes/footnotes_section"), exports);
117
117
  __exportStar(require("./nodes/graphical_abstract_section"), exports);
118
118
  __exportStar(require("./nodes/hard_break"), exports);
119
119
  __exportStar(require("./nodes/highlight_marker"), exports);
120
- __exportStar(require("./nodes/inline_equation"), exports);
121
120
  __exportStar(require("./nodes/inline_footnote"), exports);
122
121
  __exportStar(require("./nodes/keyword"), exports);
123
122
  __exportStar(require("./nodes/keywords_element"), exports);
@@ -230,6 +229,5 @@ exports.schema = new prosemirror_model_1.Schema({
230
229
  contributors: contributors_1.contributors,
231
230
  supplements: supplements_1.supplements,
232
231
  supplement: supplement_1.supplement,
233
- table_header: table_row_1.tableHeader,
234
232
  },
235
233
  });
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /*!
3
- * © 2019 Atypon Systems LLC
3
+ * © 2023 Atypon Systems LLC
4
4
  *
5
5
  * Licensed under the Apache License, Version 2.0 (the "License");
6
6
  * you may not use this file except in compliance with the License.
@@ -20,9 +20,8 @@ const json_schema_1 = require("@manuscripts/json-schema");
20
20
  exports.equation = {
21
21
  attrs: {
22
22
  id: { default: '' },
23
- MathMLStringRepresentation: { default: '' },
24
- SVGStringRepresentation: { default: '' },
25
- TeXRepresentation: { default: '' },
23
+ contents: { default: '' },
24
+ format: { default: '' },
26
25
  dataTracked: { default: null },
27
26
  },
28
27
  group: 'block',
@@ -30,26 +29,25 @@ exports.equation = {
30
29
  {
31
30
  tag: `div.${json_schema_1.ObjectTypes.Equation}`,
32
31
  getAttrs: (p) => {
33
- const dom = p;
32
+ const htmlEl = p;
34
33
  return {
35
- id: dom.getAttribute('id'),
36
- MathMLStringRepresentation: dom.getAttribute('data-mathml-string-representation'),
37
- SVGStringRepresentation: dom.innerHTML,
38
- TeXRepresentation: dom.getAttribute('data-tex-representation'),
34
+ id: htmlEl.getAttribute('id'),
35
+ format: htmlEl.getAttribute('data-equation-format'),
36
+ contents: htmlEl.innerHTML,
39
37
  };
40
38
  },
41
39
  },
42
40
  ],
43
41
  toDOM: (node) => {
44
42
  const equationNode = node;
43
+ const { id, contents, format } = equationNode.attrs;
45
44
  const dom = document.createElement('div');
46
- dom.setAttribute('id', equationNode.attrs.id);
47
45
  dom.classList.add(json_schema_1.ObjectTypes.Equation);
48
- if (equationNode.attrs.MathMLStringRepresentation) {
49
- dom.setAttribute('data-mathml-string-representation', equationNode.attrs.MathMLStringRepresentation);
46
+ dom.setAttribute('id', id);
47
+ if (format) {
48
+ dom.setAttribute('data-equation-format', format);
50
49
  }
51
- dom.setAttribute('data-tex-representation', equationNode.attrs.TeXRepresentation);
52
- dom.innerHTML = equationNode.attrs.SVGStringRepresentation;
50
+ dom.innerHTML = contents;
53
51
  return dom;
54
52
  },
55
53
  };
@@ -17,11 +17,10 @@
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.equationElement = void 0;
19
19
  exports.equationElement = {
20
- content: '(equation | placeholder) figcaption',
20
+ content: '(equation | placeholder)',
21
21
  attrs: {
22
22
  id: { default: '' },
23
- suppressCaption: { default: true },
24
- suppressTitle: { default: undefined },
23
+ label: { default: '' },
25
24
  dataTracked: { default: null },
26
25
  comments: { default: null },
27
26
  },
@@ -29,7 +28,7 @@ exports.equationElement = {
29
28
  group: 'block element',
30
29
  parseDOM: [
31
30
  {
32
- tag: 'figure.equation',
31
+ tag: 'div.equation',
33
32
  getAttrs: (p) => {
34
33
  const dom = p;
35
34
  return {
@@ -41,7 +40,7 @@ exports.equationElement = {
41
40
  toDOM: (node) => {
42
41
  const equationElementNode = node;
43
42
  return [
44
- 'figure',
43
+ 'div',
45
44
  {
46
45
  class: 'equation',
47
46
  id: equationElementNode.attrs.id,
@@ -16,43 +16,39 @@
16
16
  */
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.inlineEquation = void 0;
19
- const json_schema_1 = require("@manuscripts/json-schema");
20
19
  exports.inlineEquation = {
21
20
  attrs: {
22
- id: { default: '' },
23
- MathMLRepresentation: { default: '' },
24
- SVGRepresentation: { default: '' },
25
- TeXRepresentation: { default: '' },
26
21
  dataTracked: { default: null },
22
+ comments: { default: null },
23
+ contents: { default: '' },
24
+ format: { default: '' },
27
25
  },
26
+ selectable: false,
28
27
  atom: true,
29
28
  inline: true,
30
29
  draggable: true,
31
30
  group: 'inline',
32
31
  parseDOM: [
33
32
  {
34
- tag: `span.${json_schema_1.ObjectTypes.InlineMathFragment}`,
33
+ tag: `span.MPInlineMathFragment`,
35
34
  getAttrs: (p) => {
36
35
  const dom = p;
37
36
  return {
38
- id: dom.getAttribute('id'),
39
- MathMLRepresentation: dom.getAttribute('data-mathml-representation') || '',
40
- SVGRepresentation: dom.innerHTML || '',
41
- TeXRepresentation: dom.getAttribute('data-tex-representation') || '',
37
+ format: dom.getAttribute('data-equation-format'),
38
+ contents: dom.innerHTML,
42
39
  };
43
40
  },
44
41
  },
45
42
  ],
46
43
  toDOM: (node) => {
47
44
  const inlineEquationNode = node;
45
+ const { contents, format } = inlineEquationNode.attrs;
48
46
  const dom = document.createElement('span');
49
- dom.classList.add(json_schema_1.ObjectTypes.InlineMathFragment);
50
- dom.setAttribute('id', inlineEquationNode.attrs.id);
51
- dom.setAttribute('data-tex-representation', inlineEquationNode.attrs.TeXRepresentation);
52
- if (inlineEquationNode.attrs.MathMLRepresentation) {
53
- dom.setAttribute('data-mathml-representation', inlineEquationNode.attrs.MathMLRepresentation);
47
+ dom.classList.add('MPInlineMathFragment');
48
+ if (format) {
49
+ dom.setAttribute('data-equation-format', format);
54
50
  }
55
- dom.innerHTML = inlineEquationNode.attrs.SVGRepresentation;
51
+ dom.innerHTML = contents;
56
52
  return dom;
57
53
  },
58
54
  };
@@ -15,7 +15,7 @@
15
15
  * limitations under the License.
16
16
  */
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
- exports.tableHeader = exports.tableCell = exports.tableRow = void 0;
18
+ exports.tableCell = exports.tableRow = void 0;
19
19
  const table_cell_styles_1 = require("../../lib/table-cell-styles");
20
20
  const getCellAttrs = (p) => {
21
21
  const dom = p;
@@ -43,7 +43,7 @@ const getCellAttrs = (p) => {
43
43
  };
44
44
  };
45
45
  exports.tableRow = {
46
- content: '(table_cell | table_header)*',
46
+ content: 'table_cell+',
47
47
  tableRole: 'row',
48
48
  attrs: {
49
49
  placeholder: { default: '' },
@@ -79,62 +79,10 @@ exports.tableCell = {
79
79
  },
80
80
  tableRole: 'cell',
81
81
  isolating: true,
82
- parseDOM: [{ tag: 'td', getAttrs: getCellAttrs }],
83
- toDOM: (node) => {
84
- const tableCellNode = node;
85
- const attrs = {};
86
- const tag = tableCellNode.attrs.celltype;
87
- if (tableCellNode.attrs.colspan && tableCellNode.attrs.colspan !== 1) {
88
- attrs.colspan = String(tableCellNode.attrs.colspan);
89
- }
90
- if (tableCellNode.attrs.rowspan && tableCellNode.attrs.rowspan !== 1) {
91
- attrs.rowspan = String(tableCellNode.attrs.rowspan);
92
- }
93
- if (tableCellNode.attrs.colwidth) {
94
- attrs['data-colwidth'] = tableCellNode.attrs.colwidth.join(',');
95
- }
96
- if (tableCellNode.attrs.placeholder) {
97
- attrs['data-placeholder-text'] = tableCellNode.attrs.placeholder;
98
- }
99
- if (!tableCellNode.textContent) {
100
- attrs.class = 'placeholder';
101
- }
102
- const styleString = (0, table_cell_styles_1.serializeTableCellStyles)(tableCellNode.attrs.styles);
103
- if (styleString) {
104
- attrs.style = styleString;
105
- }
106
- if (tableCellNode.attrs.valign) {
107
- attrs.valign = tableCellNode.attrs.valign;
108
- }
109
- if (tableCellNode.attrs.align) {
110
- attrs.align = tableCellNode.attrs.align;
111
- }
112
- if (tableCellNode.attrs.scope) {
113
- attrs.scope = tableCellNode.attrs.scope;
114
- }
115
- if (tableCellNode.attrs.style) {
116
- attrs.style = tableCellNode.attrs.style;
117
- }
118
- return [tag, attrs, 0];
119
- },
120
- };
121
- exports.tableHeader = {
122
- content: 'inline*',
123
- attrs: {
124
- celltype: { default: 'th' },
125
- colspan: { default: 1 },
126
- rowspan: { default: 1 },
127
- colwidth: { default: null },
128
- placeholder: { default: 'Data' },
129
- styles: { default: {} },
130
- valign: { default: null },
131
- align: { default: null },
132
- scope: { default: null },
133
- style: { default: null },
134
- },
135
- tableRole: 'header_cell',
136
- isolating: true,
137
- parseDOM: [{ tag: 'th', getAttrs: getCellAttrs }],
82
+ parseDOM: [
83
+ { tag: 'td', getAttrs: getCellAttrs },
84
+ { tag: 'th', getAttrs: getCellAttrs },
85
+ ],
138
86
  toDOM: (node) => {
139
87
  const tableCellNode = node;
140
88
  const attrs = {};
@@ -18,7 +18,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
18
18
  return (mod && mod.__esModule) ? mod : { "default": mod };
19
19
  };
20
20
  Object.defineProperty(exports, "__esModule", { value: true });
21
- exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildInlineMathFragment = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
21
+ exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
22
22
  const json_schema_1 = require("@manuscripts/json-schema");
23
23
  const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
24
24
  const schema_1 = require("../schema");
@@ -115,13 +115,6 @@ const buildNote = (target, source, contents = '') => ({
115
115
  contents,
116
116
  });
117
117
  exports.buildNote = buildNote;
118
- const buildInlineMathFragment = (containingObject, TeXRepresentation) => ({
119
- _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.InlineMathFragment),
120
- objectType: json_schema_1.ObjectTypes.InlineMathFragment,
121
- containingObject: containingObject || undefined,
122
- TeXRepresentation,
123
- });
124
- exports.buildInlineMathFragment = buildInlineMathFragment;
125
118
  const buildFootnote = (containingObject, contents, kind = 'footnote') => ({
126
119
  _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.Footnote),
127
120
  objectType: json_schema_1.ObjectTypes.Footnote,
@@ -281,9 +281,8 @@ class Decoder {
281
281
  const model = data;
282
282
  return schema_1.schema.nodes.equation.createChecked({
283
283
  id: model._id,
284
- MathMLStringRepresentation: model.MathMLStringRepresentation,
285
- SVGStringRepresentation: model.SVGStringRepresentation,
286
- TeXRepresentation: model.TeXRepresentation,
284
+ contents: model.contents,
285
+ format: model.format,
287
286
  });
288
287
  },
289
288
  [json_schema_1.ObjectTypes.EquationElement]: (data) => {
@@ -302,12 +301,10 @@ class Decoder {
302
301
  else {
303
302
  throw new errors_1.MissingElement(model.containedObjectID);
304
303
  }
305
- const figcaption = this.getFigcaption(model);
306
304
  return schema_1.schema.nodes.equation_element.createChecked({
307
305
  id: model._id,
308
- suppressCaption: Boolean(model.suppressCaption),
309
- suppressTitle: Boolean(model.suppressTitle === undefined ? true : model.suppressTitle),
310
- }, [equation, figcaption]);
306
+ label: model.label,
307
+ }, [equation]);
311
308
  },
312
309
  [json_schema_1.ObjectTypes.FootnotesElement]: (data) => {
313
310
  const foonotesElementModel = data;
@@ -567,7 +564,6 @@ class Decoder {
567
564
  });
568
565
  },
569
566
  [json_schema_1.ObjectTypes.TableElement]: (data) => {
570
- console.log('tableElement');
571
567
  const model = data;
572
568
  const table = this.createTable(model);
573
569
  const tableElementFooter = this.createTableElementFooter(model);
@@ -62,12 +62,6 @@ const listContents = (node) => {
62
62
  }
63
63
  return (0, w3c_xmlserializer_1.default)(output);
64
64
  };
65
- const svgDefs = (svg) => {
66
- const template = document.createElement('template');
67
- template.innerHTML = svg.trim();
68
- const defs = template.content.querySelector('defs');
69
- return defs ? (0, w3c_xmlserializer_1.default)(defs) : undefined;
70
- };
71
65
  const tableRowDisplayStyle = (tagName, parent) => {
72
66
  switch (tagName) {
73
67
  case 'thead':
@@ -353,20 +347,12 @@ const encoders = {
353
347
  : false,
354
348
  }),
355
349
  equation: (node) => ({
356
- MathMLStringRepresentation: node.attrs.MathMLStringRepresentation || undefined,
357
- TeXRepresentation: node.attrs.TeXRepresentation,
358
- SVGStringRepresentation: node.attrs.SVGStringRepresentation,
350
+ contents: node.attrs.contents,
351
+ format: node.attrs.format,
359
352
  }),
360
353
  equation_element: (node) => ({
361
354
  containedObjectID: attributeOfNodeType(node, 'equation', 'id'),
362
- caption: inlineContentOfChildNodeType(node, node.type.schema.nodes.figcaption, node.type.schema.nodes.caption),
363
- title: inlineContentOfChildNodeType(node, node.type.schema.nodes.figcaption, node.type.schema.nodes.caption_title, false),
364
- elementType: 'p',
365
- suppressCaption: Boolean(node.attrs.suppressCaption) || undefined,
366
- suppressTitle: node.attrs.suppressTitle === undefined ||
367
- node.attrs.suppressTitle === true
368
- ? undefined
369
- : false,
355
+ label: node.attrs.label,
370
356
  }),
371
357
  figure: (node) => ({
372
358
  contentType: node.attrs.contentType || undefined,
@@ -413,12 +399,6 @@ const encoders = {
413
399
  .map((childNode) => childNode.attrs.id)
414
400
  .filter((id) => id),
415
401
  }),
416
- inline_equation: (node, parent) => ({
417
- containingObject: parent.attrs.id,
418
- TeXRepresentation: node.attrs.TeXRepresentation,
419
- SVGRepresentation: node.attrs.SVGRepresentation,
420
- SVGGlyphs: svgDefs(node.attrs.SVGRepresentation),
421
- }),
422
402
  keyword: (node, parent) => ({
423
403
  containedGroup: parent.attrs.id,
424
404
  name: keywordContents(node),
@@ -575,7 +555,6 @@ const placeholderTypes = [
575
555
  ];
576
556
  const encode = (node) => {
577
557
  const models = new Map();
578
- console.log('encoding...');
579
558
  const priority = {
580
559
  value: 1,
581
560
  };
@@ -593,8 +572,7 @@ const encode = (node) => {
593
572
  if (placeholderTypes.includes(child.type)) {
594
573
  return;
595
574
  }
596
- if (parent.type === schema_1.schema.nodes.paragraph &&
597
- child.type !== schema_1.schema.nodes.inline_equation) {
575
+ if (parent.type === schema_1.schema.nodes.paragraph) {
598
576
  return;
599
577
  }
600
578
  const { model, markers } = (0, exports.modelFromNode)(child, parent, path, priority);
@@ -39,7 +39,6 @@ exports.nodeTypesMap = new Map([
39
39
  [schema_1.schema.nodes.footnotes_section, json_schema_1.ObjectTypes.Section],
40
40
  [schema_1.schema.nodes.graphical_abstract_section, json_schema_1.ObjectTypes.Section],
41
41
  [schema_1.schema.nodes.highlight_marker, json_schema_1.ObjectTypes.HighlightMarker],
42
- [schema_1.schema.nodes.inline_equation, json_schema_1.ObjectTypes.InlineMathFragment],
43
42
  [schema_1.schema.nodes.keyword, json_schema_1.ObjectTypes.Keyword],
44
43
  [schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
45
44
  [schema_1.schema.nodes.keywords, json_schema_1.ObjectTypes.Section],
@@ -38,7 +38,6 @@ exports.manuscriptObjects = [
38
38
  json_schema_1.ObjectTypes.CommentAnnotation,
39
39
  json_schema_1.ObjectTypes.Contributor,
40
40
  json_schema_1.ObjectTypes.Footnote,
41
- json_schema_1.ObjectTypes.InlineMathFragment,
42
41
  json_schema_1.ObjectTypes.Section,
43
42
  ].concat(exports.elementObjects);
44
43
  const isManuscriptModel = (model) => {
package/dist/es/index.js CHANGED
@@ -1,7 +1,6 @@
1
1
  export * from './lib/section-group-type';
2
2
  export * from './lib/table-cell-styles';
3
3
  export * from './lib/utils';
4
- export * from './mathjax';
5
4
  export * from './schema';
6
5
  export * from './transformer';
7
6
  export * from './jats';