@manuscripts/transform 2.1.0 → 2.1.1-LEAN-3094

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (52) hide show
  1. package/dist/cjs/index.js +0 -1
  2. package/dist/cjs/jats/importer/jats-body-dom-parser.js +24 -72
  3. package/dist/cjs/jats/jats-exporter.js +17 -37
  4. package/dist/cjs/schema/index.js +0 -1
  5. package/dist/cjs/schema/nodes/affiliation.js +4 -1
  6. package/dist/cjs/schema/nodes/contributor.js +3 -1
  7. package/dist/cjs/schema/nodes/equation.js +12 -14
  8. package/dist/cjs/schema/nodes/equation_element.js +4 -5
  9. package/dist/cjs/schema/nodes/inline_equation.js +12 -16
  10. package/dist/cjs/transformer/builders.js +1 -8
  11. package/dist/cjs/transformer/decode.js +8 -7
  12. package/dist/cjs/transformer/encode.js +8 -25
  13. package/dist/cjs/transformer/node-types.js +0 -1
  14. package/dist/cjs/transformer/object-types.js +0 -1
  15. package/dist/es/index.js +0 -1
  16. package/dist/es/jats/importer/jats-body-dom-parser.js +25 -73
  17. package/dist/es/jats/jats-exporter.js +17 -37
  18. package/dist/es/schema/index.js +0 -1
  19. package/dist/es/schema/nodes/affiliation.js +4 -1
  20. package/dist/es/schema/nodes/contributor.js +3 -1
  21. package/dist/es/schema/nodes/equation.js +12 -14
  22. package/dist/es/schema/nodes/equation_element.js +4 -5
  23. package/dist/es/schema/nodes/inline_equation.js +12 -16
  24. package/dist/es/transformer/builders.js +0 -6
  25. package/dist/es/transformer/decode.js +8 -7
  26. package/dist/es/transformer/encode.js +8 -25
  27. package/dist/es/transformer/node-types.js +0 -1
  28. package/dist/es/transformer/object-types.js +0 -1
  29. package/dist/types/index.d.ts +0 -1
  30. package/dist/types/schema/index.d.ts +0 -1
  31. package/dist/types/schema/nodes/affiliation.d.ts +2 -0
  32. package/dist/types/schema/nodes/contributor.d.ts +4 -2
  33. package/dist/types/schema/nodes/equation.d.ts +3 -4
  34. package/dist/types/schema/nodes/equation_element.d.ts +1 -2
  35. package/dist/types/schema/nodes/inline_equation.d.ts +4 -4
  36. package/dist/types/transformer/builders.d.ts +1 -2
  37. package/package.json +3 -4
  38. package/dist/cjs/mathjax/index.js +0 -41
  39. package/dist/cjs/mathjax/mathjax-packages.js +0 -20
  40. package/dist/cjs/mathjax/mathml-to-svg.js +0 -70
  41. package/dist/cjs/mathjax/tex-to-mathml.js +0 -49
  42. package/dist/cjs/mathjax/tex-to-svg.js +0 -59
  43. package/dist/es/mathjax/index.js +0 -12
  44. package/dist/es/mathjax/mathjax-packages.js +0 -17
  45. package/dist/es/mathjax/mathml-to-svg.js +0 -66
  46. package/dist/es/mathjax/tex-to-mathml.js +0 -45
  47. package/dist/es/mathjax/tex-to-svg.js +0 -55
  48. package/dist/types/mathjax/index.d.ts +0 -3
  49. package/dist/types/mathjax/mathjax-packages.d.ts +0 -16
  50. package/dist/types/mathjax/mathml-to-svg.d.ts +0 -17
  51. package/dist/types/mathjax/tex-to-mathml.d.ts +0 -17
  52. package/dist/types/mathjax/tex-to-svg.d.ts +0 -17
package/dist/cjs/index.js CHANGED
@@ -18,7 +18,6 @@ exports.isSectionLabelNode = void 0;
18
18
  __exportStar(require("./lib/section-group-type"), exports);
19
19
  __exportStar(require("./lib/table-cell-styles"), exports);
20
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  __exportStar(require("./lib/utils"), exports);
21
- __exportStar(require("./mathjax"), exports);
22
21
  __exportStar(require("./schema"), exports);
23
22
  __exportStar(require("./transformer"), exports);
24
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  __exportStar(require("./jats"), exports);
@@ -21,8 +21,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
21
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  exports.jatsBodyDOMParser = void 0;
22
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  const mime_1 = __importDefault(require("mime"));
23
23
  const prosemirror_model_1 = require("prosemirror-model");
24
- const mathml_to_svg_1 = require("../../mathjax/mathml-to-svg");
25
- const tex_to_svg_1 = require("../../mathjax/tex-to-svg");
26
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  const schema_1 = require("../../schema");
27
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  const transformer_1 = require("../../transformer");
28
26
  const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
@@ -39,6 +37,24 @@ const chooseContentType = (graphicNode) => {
39
37
  }
40
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  }
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39
  };
40
+ const getEquationContent = (p) => {
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+ var _a;
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+ const element = p;
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+ const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
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+ let contents = '';
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+ let format = '';
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+ for (const child of container.childNodes) {
47
+ const nodeName = child.nodeName.replace(/^[a-z]:/, '');
48
+ switch (nodeName) {
49
+ case 'tex-math':
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+ case 'mml:math':
51
+ contents = child.outerHTML;
52
+ format = nodeName === 'tex-math' ? 'tex' : 'mathml';
53
+ break;
54
+ }
55
+ }
56
+ return { format, contents };
57
+ };
42
58
  const marks = [
43
59
  {
44
60
  tag: 'bold',
@@ -147,91 +163,27 @@ const nodes = [
147
163
  tag: 'inline-formula',
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  node: 'inline_equation',
149
165
  getAttrs: (node) => {
150
- var _a, _b, _c, _d, _e;
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166
  const element = node;
152
- const attrs = {
153
- id: element.getAttribute('id'),
154
- MathMLRepresentation: '',
155
- SVGRepresentation: '',
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- TeXRepresentation: '',
157
- };
158
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
159
- for (const child of container.childNodes) {
160
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
161
- switch (nodeName) {
162
- case 'tex-math':
163
- attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
164
- if (attrs.TeXRepresentation) {
165
- attrs.SVGRepresentation =
166
- (_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
167
- }
168
- break;
169
- case 'mml:math':
170
- ;
171
- child.removeAttribute('id');
172
- attrs.MathMLRepresentation = transformer_1.xmlSerializer.serializeToString(child);
173
- if (attrs.MathMLRepresentation) {
174
- attrs.SVGRepresentation =
175
- (_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLRepresentation, true)) !== null && _e !== void 0 ? _e : '';
176
- }
177
- break;
178
- }
179
- }
180
- return attrs;
167
+ return getEquationContent(element);
181
168
  },
182
169
  },
183
170
  {
184
171
  tag: 'disp-formula',
185
172
  node: 'equation_element',
186
173
  getAttrs: (node) => {
174
+ var _a, _b;
187
175
  const element = node;
188
- const caption = element.querySelector('figcaption');
189
176
  return {
190
177
  id: element.getAttribute('id'),
191
- suppressCaption: !caption,
178
+ label: (_b = (_a = element.querySelector('label')) === null || _a === void 0 ? void 0 : _a.textContent) !== null && _b !== void 0 ? _b : '',
192
179
  };
193
180
  },
194
181
  getContent: (node, schema) => {
195
- var _a, _b, _c, _d, _e;
196
182
  const element = node;
197
- const attrs = {
198
- MathMLStringRepresentation: '',
199
- SVGStringRepresentation: '',
200
- TeXRepresentation: '',
201
- };
202
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
203
- for (const child of container.childNodes) {
204
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
205
- switch (nodeName) {
206
- case 'tex-math':
207
- attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
208
- if (attrs.TeXRepresentation) {
209
- attrs.SVGStringRepresentation =
210
- (_d = (0, tex_to_svg_1.convertTeXToSVG)(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
211
- }
212
- break;
213
- case 'mml:math':
214
- ;
215
- child.removeAttribute('id');
216
- attrs.MathMLStringRepresentation =
217
- transformer_1.xmlSerializer.serializeToString(child);
218
- if (attrs.MathMLStringRepresentation) {
219
- attrs.SVGStringRepresentation =
220
- (_e = (0, mathml_to_svg_1.convertMathMLToSVG)(attrs.MathMLStringRepresentation, true)) !== null && _e !== void 0 ? _e : '';
221
- }
222
- break;
223
- }
224
- }
225
- const caption = element.querySelector('figcaption');
226
- const figcaption = schema.nodes.figcaption.create();
183
+ const attrs = getEquationContent(element);
184
+ const id = element.getAttribute('id');
227
185
  return prosemirror_model_1.Fragment.from([
228
- schema.nodes.equation.createChecked(attrs),
229
- caption
230
- ?
231
- exports.jatsBodyDOMParser.parse(caption, {
232
- topNode: figcaption,
233
- })
234
- : figcaption,
186
+ schema.nodes.equation.createChecked(Object.assign({ id }, attrs)),
235
187
  ]);
236
188
  },
237
189
  },
@@ -164,6 +164,7 @@ class JATSExporter {
164
164
  };
165
165
  this.nodeFromJATS = (JATSFragment) => {
166
166
  JATSFragment = JATSFragment.trim();
167
+ JATSFragment = JATSFragment.replace(' ', ' ');
167
168
  if (!JATSFragment.length) {
168
169
  return null;
169
170
  }
@@ -686,22 +687,23 @@ class JATSExporter {
686
687
  },
687
688
  doc: () => '',
688
689
  equation: (node) => {
689
- const formula = this.document.createElement('disp-formula');
690
- formula.setAttribute('id', normalizeID(node.attrs.id));
691
- if (node.attrs.TeXRepresentation) {
692
- const math = this.document.createElement('tex-math');
693
- math.textContent = node.attrs.TeXRepresentation;
694
- formula.appendChild(math);
695
- }
696
- else if (node.attrs.MathMLStringRepresentation) {
697
- const math = this.nodeFromJATS(node.attrs.MathMLStringRepresentation);
698
- if (math) {
699
- formula.appendChild(math);
700
- }
701
- }
702
- return formula;
690
+ const math = this.nodeFromJATS(node.attrs.contents);
691
+ const mathEl = math;
692
+ mathEl.setAttribute('id', normalizeID(node.attrs.id));
693
+ return mathEl;
694
+ },
695
+ inline_equation: (node) => {
696
+ const eqElement = this.document.createElement('inline-formula');
697
+ const math = this.nodeFromJATS(node.attrs.contents);
698
+ eqElement.append(math);
699
+ return eqElement;
700
+ },
701
+ equation_element: (node) => {
702
+ const eqElement = this.document.createElement('disp-formula');
703
+ eqElement.setAttribute('id', normalizeID(node.attrs.id));
704
+ processChildNodes(eqElement, node, schema_1.schema.nodes.equation);
705
+ return eqElement;
703
706
  },
704
- equation_element: (node) => createFigureElement(node, 'fig', node.type.schema.nodes.equation, 'equation'),
705
707
  figcaption: (node) => {
706
708
  if (!node.textContent) {
707
709
  return '';
@@ -751,28 +753,6 @@ class JATSExporter {
751
753
  },
752
754
  hard_break: () => '',
753
755
  highlight_marker: () => '',
754
- inline_equation: (node) => {
755
- const formula = this.document.createElement('inline-formula');
756
- formula.setAttribute('id', normalizeID(node.attrs.id));
757
- if (node.attrs.TeXRepresentation) {
758
- const math = this.document.createElement('tex-math');
759
- math.textContent = node.attrs.TeXRepresentation;
760
- formula.appendChild(math);
761
- }
762
- else if (node.attrs.MathMLRepresentation) {
763
- const math = this.nodeFromJATS(node.attrs.MathMLRepresentation);
764
- if (math) {
765
- formula.appendChild(math);
766
- }
767
- }
768
- else if (node.attrs.SVGRepresentation) {
769
- const math = this.nodeFromJATS(node.attrs.SVGRepresentation);
770
- if (math) {
771
- formula.appendChild(math);
772
- }
773
- }
774
- return formula;
775
- },
776
756
  inline_footnote: (node) => {
777
757
  const xref = this.document.createElement('xref');
778
758
  xref.setAttribute('ref-type', 'fn');
@@ -117,7 +117,6 @@ __exportStar(require("./nodes/footnotes_section"), exports);
117
117
  __exportStar(require("./nodes/graphical_abstract_section"), exports);
118
118
  __exportStar(require("./nodes/hard_break"), exports);
119
119
  __exportStar(require("./nodes/highlight_marker"), exports);
120
- __exportStar(require("./nodes/inline_equation"), exports);
121
120
  __exportStar(require("./nodes/inline_footnote"), exports);
122
121
  __exportStar(require("./nodes/keyword"), exports);
123
122
  __exportStar(require("./nodes/keywords_element"), exports);
@@ -2,6 +2,7 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.isAffiliationNode = exports.affiliation = void 0;
4
4
  exports.affiliation = {
5
+ content: 'inline*',
5
6
  attrs: {
6
7
  id: { default: '' },
7
8
  institution: { default: '' },
@@ -11,6 +12,8 @@ exports.affiliation = {
11
12
  addressLine3: { default: '' },
12
13
  postCode: { default: '' },
13
14
  country: { default: '' },
15
+ county: { default: '' },
16
+ city: { default: '' },
14
17
  priority: { default: undefined },
15
18
  email: {
16
19
  default: {
@@ -20,7 +23,7 @@ exports.affiliation = {
20
23
  },
21
24
  dataTracked: { default: null },
22
25
  },
23
- group: 'block element',
26
+ group: 'block',
24
27
  parseDOM: [
25
28
  {
26
29
  tag: 'div.affiliation',
@@ -6,6 +6,7 @@ exports.contributor = {
6
6
  attrs: {
7
7
  id: { default: '' },
8
8
  role: { default: '' },
9
+ email: { default: '' },
9
10
  affiliations: { default: [] },
10
11
  footnote: { default: undefined },
11
12
  corresp: { default: undefined },
@@ -13,12 +14,13 @@ exports.contributor = {
13
14
  userID: { default: undefined },
14
15
  invitationID: { default: undefined },
15
16
  isCorresponding: { default: undefined },
17
+ isJointContributor: { default: undefined },
16
18
  ORCIDIdentifier: { default: undefined },
17
19
  priority: { default: undefined },
18
20
  dataTracked: { default: null },
19
21
  contents: { default: '' },
20
22
  },
21
- group: 'block element',
23
+ group: 'block',
22
24
  toDOM: (node) => {
23
25
  const contributorNode = node;
24
26
  return [
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /*!
3
- * © 2019 Atypon Systems LLC
3
+ * © 2023 Atypon Systems LLC
4
4
  *
5
5
  * Licensed under the Apache License, Version 2.0 (the "License");
6
6
  * you may not use this file except in compliance with the License.
@@ -20,9 +20,8 @@ const json_schema_1 = require("@manuscripts/json-schema");
20
20
  exports.equation = {
21
21
  attrs: {
22
22
  id: { default: '' },
23
- MathMLStringRepresentation: { default: '' },
24
- SVGStringRepresentation: { default: '' },
25
- TeXRepresentation: { default: '' },
23
+ contents: { default: '' },
24
+ format: { default: '' },
26
25
  dataTracked: { default: null },
27
26
  },
28
27
  group: 'block',
@@ -30,26 +29,25 @@ exports.equation = {
30
29
  {
31
30
  tag: `div.${json_schema_1.ObjectTypes.Equation}`,
32
31
  getAttrs: (p) => {
33
- const dom = p;
32
+ const htmlEl = p;
34
33
  return {
35
- id: dom.getAttribute('id'),
36
- MathMLStringRepresentation: dom.getAttribute('data-mathml-string-representation'),
37
- SVGStringRepresentation: dom.innerHTML,
38
- TeXRepresentation: dom.getAttribute('data-tex-representation'),
34
+ id: htmlEl.getAttribute('id'),
35
+ format: htmlEl.getAttribute('data-equation-format'),
36
+ contents: htmlEl.innerHTML,
39
37
  };
40
38
  },
41
39
  },
42
40
  ],
43
41
  toDOM: (node) => {
44
42
  const equationNode = node;
43
+ const { id, contents, format } = equationNode.attrs;
45
44
  const dom = document.createElement('div');
46
- dom.setAttribute('id', equationNode.attrs.id);
47
45
  dom.classList.add(json_schema_1.ObjectTypes.Equation);
48
- if (equationNode.attrs.MathMLStringRepresentation) {
49
- dom.setAttribute('data-mathml-string-representation', equationNode.attrs.MathMLStringRepresentation);
46
+ dom.setAttribute('id', id);
47
+ if (format) {
48
+ dom.setAttribute('data-equation-format', format);
50
49
  }
51
- dom.setAttribute('data-tex-representation', equationNode.attrs.TeXRepresentation);
52
- dom.innerHTML = equationNode.attrs.SVGStringRepresentation;
50
+ dom.innerHTML = contents;
53
51
  return dom;
54
52
  },
55
53
  };
@@ -17,11 +17,10 @@
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.equationElement = void 0;
19
19
  exports.equationElement = {
20
- content: '(equation | placeholder) figcaption',
20
+ content: '(equation | placeholder)',
21
21
  attrs: {
22
22
  id: { default: '' },
23
- suppressCaption: { default: true },
24
- suppressTitle: { default: undefined },
23
+ label: { default: '' },
25
24
  dataTracked: { default: null },
26
25
  comments: { default: null },
27
26
  },
@@ -29,7 +28,7 @@ exports.equationElement = {
29
28
  group: 'block element',
30
29
  parseDOM: [
31
30
  {
32
- tag: 'figure.equation',
31
+ tag: 'div.equation',
33
32
  getAttrs: (p) => {
34
33
  const dom = p;
35
34
  return {
@@ -41,7 +40,7 @@ exports.equationElement = {
41
40
  toDOM: (node) => {
42
41
  const equationElementNode = node;
43
42
  return [
44
- 'figure',
43
+ 'div',
45
44
  {
46
45
  class: 'equation',
47
46
  id: equationElementNode.attrs.id,
@@ -16,43 +16,39 @@
16
16
  */
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.inlineEquation = void 0;
19
- const json_schema_1 = require("@manuscripts/json-schema");
20
19
  exports.inlineEquation = {
21
20
  attrs: {
22
- id: { default: '' },
23
- MathMLRepresentation: { default: '' },
24
- SVGRepresentation: { default: '' },
25
- TeXRepresentation: { default: '' },
26
21
  dataTracked: { default: null },
22
+ comments: { default: null },
23
+ contents: { default: '' },
24
+ format: { default: '' },
27
25
  },
26
+ selectable: false,
28
27
  atom: true,
29
28
  inline: true,
30
29
  draggable: true,
31
30
  group: 'inline',
32
31
  parseDOM: [
33
32
  {
34
- tag: `span.${json_schema_1.ObjectTypes.InlineMathFragment}`,
33
+ tag: `span.MPInlineMathFragment`,
35
34
  getAttrs: (p) => {
36
35
  const dom = p;
37
36
  return {
38
- id: dom.getAttribute('id'),
39
- MathMLRepresentation: dom.getAttribute('data-mathml-representation') || '',
40
- SVGRepresentation: dom.innerHTML || '',
41
- TeXRepresentation: dom.getAttribute('data-tex-representation') || '',
37
+ format: dom.getAttribute('data-equation-format'),
38
+ contents: dom.innerHTML,
42
39
  };
43
40
  },
44
41
  },
45
42
  ],
46
43
  toDOM: (node) => {
47
44
  const inlineEquationNode = node;
45
+ const { contents, format } = inlineEquationNode.attrs;
48
46
  const dom = document.createElement('span');
49
- dom.classList.add(json_schema_1.ObjectTypes.InlineMathFragment);
50
- dom.setAttribute('id', inlineEquationNode.attrs.id);
51
- dom.setAttribute('data-tex-representation', inlineEquationNode.attrs.TeXRepresentation);
52
- if (inlineEquationNode.attrs.MathMLRepresentation) {
53
- dom.setAttribute('data-mathml-representation', inlineEquationNode.attrs.MathMLRepresentation);
47
+ dom.classList.add('MPInlineMathFragment');
48
+ if (format) {
49
+ dom.setAttribute('data-equation-format', format);
54
50
  }
55
- dom.innerHTML = inlineEquationNode.attrs.SVGRepresentation;
51
+ dom.innerHTML = contents;
56
52
  return dom;
57
53
  },
58
54
  };
@@ -18,7 +18,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
18
18
  return (mod && mod.__esModule) ? mod : { "default": mod };
19
19
  };
20
20
  Object.defineProperty(exports, "__esModule", { value: true });
21
- exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildInlineMathFragment = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
21
+ exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildJournal = exports.buildAttribution = exports.buildContributorRole = exports.buildContribution = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildNote = exports.buildComment = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildKeywordGroup = exports.buildKeyword = exports.buildBibliographyElement = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = void 0;
22
22
  const json_schema_1 = require("@manuscripts/json-schema");
23
23
  const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
24
24
  const schema_1 = require("../schema");
@@ -115,13 +115,6 @@ const buildNote = (target, source, contents = '') => ({
115
115
  contents,
116
116
  });
117
117
  exports.buildNote = buildNote;
118
- const buildInlineMathFragment = (containingObject, TeXRepresentation) => ({
119
- _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.InlineMathFragment),
120
- objectType: json_schema_1.ObjectTypes.InlineMathFragment,
121
- containingObject: containingObject || undefined,
122
- TeXRepresentation,
123
- });
124
- exports.buildInlineMathFragment = buildInlineMathFragment;
125
118
  const buildFootnote = (containingObject, contents, kind = 'footnote') => ({
126
119
  _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.Footnote),
127
120
  objectType: json_schema_1.ObjectTypes.Footnote,
@@ -281,9 +281,8 @@ class Decoder {
281
281
  const model = data;
282
282
  return schema_1.schema.nodes.equation.createChecked({
283
283
  id: model._id,
284
- MathMLStringRepresentation: model.MathMLStringRepresentation,
285
- SVGStringRepresentation: model.SVGStringRepresentation,
286
- TeXRepresentation: model.TeXRepresentation,
284
+ contents: model.contents,
285
+ format: model.format,
287
286
  });
288
287
  },
289
288
  [json_schema_1.ObjectTypes.EquationElement]: (data) => {
@@ -302,12 +301,10 @@ class Decoder {
302
301
  else {
303
302
  throw new errors_1.MissingElement(model.containedObjectID);
304
303
  }
305
- const figcaption = this.getFigcaption(model);
306
304
  return schema_1.schema.nodes.equation_element.createChecked({
307
305
  id: model._id,
308
- suppressCaption: Boolean(model.suppressCaption),
309
- suppressTitle: Boolean(model.suppressTitle === undefined ? true : model.suppressTitle),
310
- }, [equation, figcaption]);
306
+ label: model.label,
307
+ }, [equation]);
311
308
  },
312
309
  [json_schema_1.ObjectTypes.FootnotesElement]: (data) => {
313
310
  const foonotesElementModel = data;
@@ -628,6 +625,8 @@ class Decoder {
628
625
  addressLine3: model.addressLine3,
629
626
  postCode: model.postCode,
630
627
  country: model.country,
628
+ county: model.county,
629
+ city: model.city,
631
630
  email: model.email,
632
631
  department: model.department,
633
632
  priority: model.priority,
@@ -639,6 +638,8 @@ class Decoder {
639
638
  id: model._id,
640
639
  role: model.role,
641
640
  affiliations: model.affiliations,
641
+ email: model.email,
642
+ isJointContributor: model.isJointContributor,
642
643
  bibliographicName: model.bibliographicName,
643
644
  userID: model.userID,
644
645
  invitationID: model.invitationID,
@@ -62,12 +62,6 @@ const listContents = (node) => {
62
62
  }
63
63
  return (0, w3c_xmlserializer_1.default)(output);
64
64
  };
65
- const svgDefs = (svg) => {
66
- const template = document.createElement('template');
67
- template.innerHTML = svg.trim();
68
- const defs = template.content.querySelector('defs');
69
- return defs ? (0, w3c_xmlserializer_1.default)(defs) : undefined;
70
- };
71
65
  const tableRowDisplayStyle = (tagName, parent) => {
72
66
  switch (tagName) {
73
67
  case 'thead':
@@ -353,20 +347,12 @@ const encoders = {
353
347
  : false,
354
348
  }),
355
349
  equation: (node) => ({
356
- MathMLStringRepresentation: node.attrs.MathMLStringRepresentation || undefined,
357
- TeXRepresentation: node.attrs.TeXRepresentation,
358
- SVGStringRepresentation: node.attrs.SVGStringRepresentation,
350
+ contents: node.attrs.contents,
351
+ format: node.attrs.format,
359
352
  }),
360
353
  equation_element: (node) => ({
361
354
  containedObjectID: attributeOfNodeType(node, 'equation', 'id'),
362
- caption: inlineContentOfChildNodeType(node, node.type.schema.nodes.figcaption, node.type.schema.nodes.caption),
363
- title: inlineContentOfChildNodeType(node, node.type.schema.nodes.figcaption, node.type.schema.nodes.caption_title, false),
364
- elementType: 'p',
365
- suppressCaption: Boolean(node.attrs.suppressCaption) || undefined,
366
- suppressTitle: node.attrs.suppressTitle === undefined ||
367
- node.attrs.suppressTitle === true
368
- ? undefined
369
- : false,
355
+ label: node.attrs.label,
370
356
  }),
371
357
  figure: (node) => ({
372
358
  contentType: node.attrs.contentType || undefined,
@@ -413,12 +399,6 @@ const encoders = {
413
399
  .map((childNode) => childNode.attrs.id)
414
400
  .filter((id) => id),
415
401
  }),
416
- inline_equation: (node, parent) => ({
417
- containingObject: parent.attrs.id,
418
- TeXRepresentation: node.attrs.TeXRepresentation,
419
- SVGRepresentation: node.attrs.SVGRepresentation,
420
- SVGGlyphs: svgDefs(node.attrs.SVGRepresentation),
421
- }),
422
402
  keyword: (node, parent) => ({
423
403
  containedGroup: parent.attrs.id,
424
404
  name: keywordContents(node),
@@ -508,8 +488,11 @@ const encoders = {
508
488
  addressLine1: node.attrs.addressLine1,
509
489
  addressLine2: node.attrs.addressLine2,
510
490
  addressLine3: node.attrs.addressLine3,
491
+ department: node.attrs.department,
511
492
  postCode: node.attrs.postCode,
512
493
  country: node.attrs.country,
494
+ county: node.attrs.county,
495
+ city: node.attrs.city,
513
496
  email: node.attrs.email,
514
497
  priority: node.attrs.priority,
515
498
  }),
@@ -520,6 +503,7 @@ const encoders = {
520
503
  userID: node.attrs.userID,
521
504
  invitationID: node.attrs.invitationID,
522
505
  isCorresponding: node.attrs.isCorresponding,
506
+ isJointContributor: node.attrs.isJointContributor,
523
507
  ORCIDIdentifier: node.attrs.ORCIDIdentifier,
524
508
  footnote: node.attrs.footnote,
525
509
  corresp: node.attrs.corresp,
@@ -588,8 +572,7 @@ const encode = (node) => {
588
572
  if (placeholderTypes.includes(child.type)) {
589
573
  return;
590
574
  }
591
- if (parent.type === schema_1.schema.nodes.paragraph &&
592
- child.type !== schema_1.schema.nodes.inline_equation) {
575
+ if (parent.type === schema_1.schema.nodes.paragraph) {
593
576
  return;
594
577
  }
595
578
  const { model, markers } = (0, exports.modelFromNode)(child, parent, path, priority);
@@ -39,7 +39,6 @@ exports.nodeTypesMap = new Map([
39
39
  [schema_1.schema.nodes.footnotes_section, json_schema_1.ObjectTypes.Section],
40
40
  [schema_1.schema.nodes.graphical_abstract_section, json_schema_1.ObjectTypes.Section],
41
41
  [schema_1.schema.nodes.highlight_marker, json_schema_1.ObjectTypes.HighlightMarker],
42
- [schema_1.schema.nodes.inline_equation, json_schema_1.ObjectTypes.InlineMathFragment],
43
42
  [schema_1.schema.nodes.keyword, json_schema_1.ObjectTypes.Keyword],
44
43
  [schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
45
44
  [schema_1.schema.nodes.keywords, json_schema_1.ObjectTypes.Section],
@@ -38,7 +38,6 @@ exports.manuscriptObjects = [
38
38
  json_schema_1.ObjectTypes.CommentAnnotation,
39
39
  json_schema_1.ObjectTypes.Contributor,
40
40
  json_schema_1.ObjectTypes.Footnote,
41
- json_schema_1.ObjectTypes.InlineMathFragment,
42
41
  json_schema_1.ObjectTypes.Section,
43
42
  ].concat(exports.elementObjects);
44
43
  const isManuscriptModel = (model) => {
package/dist/es/index.js CHANGED
@@ -1,7 +1,6 @@
1
1
  export * from './lib/section-group-type';
2
2
  export * from './lib/table-cell-styles';
3
3
  export * from './lib/utils';
4
- export * from './mathjax';
5
4
  export * from './schema';
6
5
  export * from './transformer';
7
6
  export * from './jats';