@manuscripts/transform 2.0.4 → 2.1.1

package/dist/cjs/jats/importer/jats-body-dom-parser.js

@@ -430,6 +430,25 @@ const nodes = [
         tag: 'sec[sec-type="keywords"]',
         node: 'keywords',
     },
+    {
+        tag: 'sec[sec-type="supplementary-material"]',
+        node: 'supplements',
+    },
+    {
+        tag: 'supplementary-material',
+        node: 'supplement',
+        getAttrs: (node) => {
+            var _a;
+            const element = node;
+            return {
+                id: element.getAttribute('id'),
+                href: element.getAttributeNS(XLINK_NAMESPACE, 'href'),
+                mimeType: element.getAttribute('mimetype'),
+                mimeSubType: element.getAttribute('mime-subtype'),
+                title: (_a = element.querySelector('title')) === null || _a === void 0 ? void 0 : _a.textContent,
+            };
+        },
+    },
     {
         tag: 'sec[sec-type="abstracts"]',
         node: 'abstracts',
@@ -526,7 +545,7 @@ const nodes = [
     {
         tag: 'title',
         node: 'section_title',
-        context: 'section/|footnotes_section/|bibliography_section/|keywords/',
+        context: 'section/|footnotes_section/|bibliography_section/|keywords/|supplements/',
     },
     {
         tag: 'title',

package/dist/cjs/jats/importer/jats-body-transformations.js

@@ -287,4 +287,18 @@ exports.jatsBodyTransformations = {
             body.prepend(section);
         }
     },
+    createSuppleMaterials(document, body, createElement) {
+        const suppleMaterials = [
+            ...document.querySelectorAll('article-meta > supplementary-material'),
+        ];
+        if (suppleMaterials.length > 0) {
+            const section = createElement('sec');
+            section.setAttribute('sec-type', 'supplementary-material');
+            const title = createElement('title');
+            title.textContent = 'supplementary-material';
+            section.append(title);
+            section.append(...suppleMaterials);
+            body.prepend(section);
+        }
+    },
 };

package/dist/cjs/jats/importer/jats-front-parser.js

@@ -128,25 +128,6 @@ exports.jatsFrontParser = {
         }
         return history;
     },
-    parseSupplements(elements) {
-        var _a, _b, _c, _d;
-        if (!(elements === null || elements === void 0 ? void 0 : elements.length)) {
-            return [];
-        }
-        const supplements = [];
-        for (const element of elements) {
-            const title = (_a = (0, utils_1.getTrimmedTextContent)(element, 'caption > title')) !== null && _a !== void 0 ? _a : '';
-            const href = (_b = element.getAttributeNS(XLINK_NAMESPACE, 'href')) !== null && _b !== void 0 ? _b : '';
-            const supplement = (0, transformer_1.buildSupplementaryMaterial)(title, href);
-            const mimeType = (_c = element.getAttribute('mimetype')) !== null && _c !== void 0 ? _c : '';
-            const mimeSubtype = (_d = element.getAttribute('mime-subtype')) !== null && _d !== void 0 ? _d : '';
-            if (mimeType && mimeSubtype) {
-                supplement.MIME = [mimeType, mimeSubtype].join('/');
-            }
-            supplements.push(supplement);
-        }
-        return supplements;
-    },
     parseAffiliations(elements) {
         const affiliationIDs = new Map();
         const affiliations = elements.map((element, priority) => {

package/dist/cjs/jats/importer/parse-jats-article.js

@@ -43,9 +43,6 @@ const parseJATSFront = (doc, front) => {
     const authors = jats_front_parser_1.jatsFrontParser.parseContributors([
         ...front.querySelectorAll('article-meta > contrib-group > contrib[contrib-type="author"]'),
     ], affiliationIDs, footnoteIDs, correspondingIDs);
-    const supplements = jats_front_parser_1.jatsFrontParser.parseSupplements([
-        ...front.querySelectorAll('article-meta > supplementary-material'),
-    ]);
     const history = jats_front_parser_1.jatsFrontParser.parseDates(front.querySelector('article-meta > history'));
     const counts = jats_front_parser_1.jatsFrontParser.parseCounts(front.querySelector('article-meta counts'));
     const manuscript = Object.assign(Object.assign(Object.assign({}, (0, builders_1.buildManuscript)()), counts), history);
@@ -57,7 +54,6 @@ const parseJATSFront = (doc, front) => {
         ...authors,
         ...affiliations,
         ...correspondingList,
-        ...supplements,
     ]);
 };
 exports.parseJATSFront = parseJATSFront;
@@ -69,6 +65,7 @@ const parseJATSBody = (doc, body, references) => {
     jats_body_transformations_1.jatsBodyTransformations.createBody(doc, body, createElement);
     jats_body_transformations_1.jatsBodyTransformations.createAbstracts(doc, body, createElement);
     jats_body_transformations_1.jatsBodyTransformations.createBackmatter(doc, body, createElement);
+    jats_body_transformations_1.jatsBodyTransformations.createSuppleMaterials(doc, body, createElement);
     jats_body_transformations_1.jatsBodyTransformations.createKeywords(doc, body, createElement);
     const node = jats_body_dom_parser_1.jatsBodyDOMParser.parse(body).firstChild;
     if (!node) {

package/dist/cjs/jats/jats-exporter.js

@@ -628,6 +628,8 @@ class JATSExporter {
                 body: () => ['body', 0],
                 abstracts: () => ['abstract', 0],
                 backmatter: () => ['backmatter', 0],
+                supplement: () => '',
+                supplements: () => '',
                 bibliography_section: (node) => [
                     'ref-list',
                     { id: normalizeID(node.attrs.id) },

package/dist/cjs/schema/index.js

@@ -81,6 +81,8 @@ const pullquote_element_1 = require("./nodes/pullquote_element");
 const section_1 = require("./nodes/section");
 const section_label_1 = require("./nodes/section_label");
 const section_title_1 = require("./nodes/section_title");
+const supplement_1 = require("./nodes/supplement");
+const supplements_1 = require("./nodes/supplements");
 const table_1 = require("./nodes/table");
 const table_col_1 = require("./nodes/table_col");
 const table_element_1 = require("./nodes/table_element");
@@ -145,6 +147,8 @@ __exportStar(require("./nodes/table_element_footer"), exports);
 __exportStar(require("./nodes/title"), exports);
 __exportStar(require("./nodes/affiliations"), exports);
 __exportStar(require("./nodes/contributors"), exports);
+__exportStar(require("./nodes/supplement"), exports);
+__exportStar(require("./nodes/supplements"), exports);
 exports.schema = new prosemirror_model_1.Schema({
     marks: {
         bold: marks_1.bold,
@@ -224,5 +228,7 @@ exports.schema = new prosemirror_model_1.Schema({
         title: title_1.title,
         affiliations: affiliations_1.affiliations,
         contributors: contributors_1.contributors,
+        supplements: supplements_1.supplements,
+        supplement: supplement_1.supplement,
     },
 });

package/dist/cjs/schema/nodes/affiliation.js

@@ -2,6 +2,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isAffiliationNode = exports.affiliation = void 0;
 exports.affiliation = {
+    content: 'inline*',
     attrs: {
         id: { default: '' },
         institution: { default: '' },
@@ -11,6 +12,8 @@ exports.affiliation = {
         addressLine3: { default: '' },
         postCode: { default: '' },
         country: { default: '' },
+        county: { default: '' },
+        city: { default: '' },
         priority: { default: undefined },
         email: {
             default: {
@@ -20,7 +23,7 @@ exports.affiliation = {
         },
         dataTracked: { default: null },
     },
-    group: 'block element',
+    group: 'block',
     parseDOM: [
         {
             tag: 'div.affiliation',

package/dist/cjs/schema/nodes/contributor.js

@@ -6,6 +6,7 @@ exports.contributor = {
     attrs: {
         id: { default: '' },
         role: { default: '' },
+        email: { default: '' },
         affiliations: { default: [] },
         footnote: { default: undefined },
         corresp: { default: undefined },
@@ -13,12 +14,13 @@ exports.contributor = {
         userID: { default: undefined },
         invitationID: { default: undefined },
         isCorresponding: { default: undefined },
+        isJointContributor: { default: undefined },
         ORCIDIdentifier: { default: undefined },
         priority: { default: undefined },
         dataTracked: { default: null },
         contents: { default: '' },
     },
-    group: 'block element',
+    group: 'block',
     toDOM: (node) => {
         const contributorNode = node;
         return [

package/dist/cjs/schema/nodes/manuscript.js

@@ -17,7 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isManuscriptNode = exports.manuscript = void 0;
 exports.manuscript = {
-    content: 'title? contributors? affiliations? keywords? abstracts body backmatter comments',
+    content: 'title? contributors? affiliations? keywords? supplements? abstracts body backmatter comments',
     attrs: {
         id: { default: '' },
     },

package/dist/cjs/schema/nodes/supplement.js

@@ -0,0 +1,63 @@
+"use strict";
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.supplement = void 0;
+exports.supplement = {
+    attrs: {
+        id: { default: '' },
+        href: { default: '' },
+        mimeType: { default: '' },
+        mimeSubType: { default: '' },
+        title: { default: '' },
+        dataTracked: { default: null },
+    },
+    group: 'block',
+    parseDOM: [
+        {
+            tag: 'div.supplement',
+            getAttrs: (dom) => {
+                const el = dom;
+                const id = el.getAttribute('id');
+                const href = el.getAttribute('href');
+                const mimeType = el.getAttribute('mimeType');
+                const mimeSubType = el.getAttribute('mimeSubType');
+                const title = el.textContent;
+                return {
+                    id,
+                    href,
+                    mimeType,
+                    mimeSubType,
+                    title,
+                };
+            },
+        },
+    ],
+    toDOM: (node) => {
+        const supplement = node;
+        return [
+            'div',
+            {
+                id: supplement.attrs.id,
+                class: 'Supplement',
+                href: node.attrs.href,
+                mimeType: node.attrs.mimeType,
+                mimeSubType: node.attrs.mimeSubType,
+                title: node.attrs.title,
+            },
+        ];
+    },
+};

package/dist/cjs/schema/nodes/supplements.js

@@ -0,0 +1,45 @@
+"use strict";
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.supplements = void 0;
+exports.supplements = {
+    content: 'section_title supplement*',
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+    },
+    group: 'block',
+    selectable: false,
+    parseDOM: [
+        {
+            tag: 'div.supplements',
+        },
+    ],
+    toDOM: (node) => {
+        const supplements = node;
+        return [
+            'div',
+            {
+                id: supplements.attrs.id,
+                class: 'supplements',
+                spellcheck: 'false',
+                contenteditable: false,
+            },
+            0,
+        ];
+    },
+};

package/dist/cjs/transformer/decode.js

@@ -64,6 +64,7 @@ const getSections = (modelMap) => (0, exports.getModelsByType)(modelMap, json_sc
 const getAffiliations = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Affiliation);
 const getContributors = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Contributor);
 const getKeywordElements = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.KeywordsElement);
+const getSupplements = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Supplement);
 const getKeywordGroups = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.KeywordGroup);
 const getKeywords = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Keyword);
 const getTitles = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Titles)[0];
@@ -102,6 +103,15 @@ class Decoder {
             ...elements,
         ]);
     }
+    createSupplementsNode() {
+        const elements = getSupplements(this.modelMap)
+            .map((e) => this.decode(e))
+            .filter(Boolean);
+        return schema_1.schema.nodes.supplements.createAndFill({}, [
+            schema_1.schema.nodes.section_title.create({}, schema_1.schema.text('SupplementaryMaterials')),
+            ...elements,
+        ]);
+    }
     createCommentsNode() {
         return schema_1.schema.nodes.comments.createAndFill({}, [
             ...this.comments.values(),
@@ -618,6 +628,8 @@ class Decoder {
                     addressLine3: model.addressLine3,
                     postCode: model.postCode,
                     country: model.country,
+                    county: model.county,
+                    city: model.city,
                     email: model.email,
                     department: model.department,
                     priority: model.priority,
@@ -629,6 +641,8 @@ class Decoder {
                     id: model._id,
                     role: model.role,
                     affiliations: model.affiliations,
+                    email: model.email,
+                    isJointContributor: model.isJointContributor,
                     bibliographicName: model.bibliographicName,
                     userID: model.userID,
                     invitationID: model.invitationID,
@@ -639,6 +653,17 @@ class Decoder {
                     priority: model.priority,
                 }, schema_1.schema.text('_'));
             },
+            [json_schema_1.ObjectTypes.Supplement]: (data) => {
+                var _a, _b;
+                const model = data;
+                return schema_1.schema.nodes.supplement.create({
+                    id: model._id,
+                    href: model.href,
+                    mimeType: (_a = model.MIME) === null || _a === void 0 ? void 0 : _a.split('/')[0],
+                    mimeSubType: (_b = model.MIME) === null || _b === void 0 ? void 0 : _b.split('/')[1],
+                    title: model.title,
+                });
+            },
         };
         this.decode = (model) => {
             if (!this.creators[model.objectType]) {
@@ -653,6 +678,7 @@ class Decoder {
             const contributors = this.createContributorsNode();
             const affiliations = this.createAffiliationsNode();
             const keywords = this.createKeywordsNode();
+            const suppl = this.createSupplementsNode();
             const { abstracts, body, backmatter } = this.createContentSections();
             const comments = this.createCommentsNode();
             const contents = [
@@ -660,6 +686,7 @@ class Decoder {
                 contributors,
                 affiliations,
                 keywords,
+                suppl,
                 abstracts,
                 body,
                 backmatter,

package/dist/cjs/transformer/encode.js

@@ -508,8 +508,11 @@ const encoders = {
         addressLine1: node.attrs.addressLine1,
         addressLine2: node.attrs.addressLine2,
         addressLine3: node.attrs.addressLine3,
+        department: node.attrs.department,
         postCode: node.attrs.postCode,
         country: node.attrs.country,
+        county: node.attrs.county,
+        city: node.attrs.city,
         email: node.attrs.email,
         priority: node.attrs.priority,
     }),
@@ -520,11 +523,19 @@ const encoders = {
         userID: node.attrs.userID,
         invitationID: node.attrs.invitationID,
         isCorresponding: node.attrs.isCorresponding,
+        isJointContributor: node.attrs.isJointContributor,
         ORCIDIdentifier: node.attrs.ORCIDIdentifier,
         footnote: node.attrs.footnote,
         corresp: node.attrs.corresp,
         priority: node.attrs.priority,
     }),
+    supplement: (node) => ({
+        href: node.attrs.href,
+        title: node.attrs.title,
+        MIME: node.attrs.mimeType && node.attrs.mimeSubType
+            ? [node.attrs.mimeType, node.attrs.mimeSubType].join('/')
+            : '',
+    }),
 };
 const modelData = (node, parent, path, priority) => {
     const encoder = encoders[node.type.name];
@@ -553,6 +564,7 @@ const containerTypes = [
     schema_1.schema.nodes.contributors,
     schema_1.schema.nodes.affiliations,
     schema_1.schema.nodes.keywords,
+    schema_1.schema.nodes.supplements,
     schema_1.schema.nodes.abstracts,
     schema_1.schema.nodes.body,
     schema_1.schema.nodes.backmatter,

package/dist/cjs/transformer/node-types.js

@@ -61,6 +61,7 @@ exports.nodeTypesMap = new Map([
     [schema_1.schema.nodes.contributors, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.affiliations, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.title, json_schema_1.ObjectTypes.Titles],
+    [schema_1.schema.nodes.supplement, json_schema_1.ObjectTypes.Supplement],
 ]);
 const isExecutableNodeType = (type) => (0, schema_1.hasGroup)(type, schema_1.GROUP_EXECUTABLE);
 exports.isExecutableNodeType = isExecutableNodeType;

package/dist/es/jats/importer/jats-body-dom-parser.js

@@ -424,6 +424,25 @@ const nodes = [
         tag: 'sec[sec-type="keywords"]',
         node: 'keywords',
     },
+    {
+        tag: 'sec[sec-type="supplementary-material"]',
+        node: 'supplements',
+    },
+    {
+        tag: 'supplementary-material',
+        node: 'supplement',
+        getAttrs: (node) => {
+            var _a;
+            const element = node;
+            return {
+                id: element.getAttribute('id'),
+                href: element.getAttributeNS(XLINK_NAMESPACE, 'href'),
+                mimeType: element.getAttribute('mimetype'),
+                mimeSubType: element.getAttribute('mime-subtype'),
+                title: (_a = element.querySelector('title')) === null || _a === void 0 ? void 0 : _a.textContent,
+            };
+        },
+    },
     {
         tag: 'sec[sec-type="abstracts"]',
         node: 'abstracts',
@@ -520,7 +539,7 @@ const nodes = [
     {
         tag: 'title',
         node: 'section_title',
-        context: 'section/|footnotes_section/|bibliography_section/|keywords/',
+        context: 'section/|footnotes_section/|bibliography_section/|keywords/|supplements/',
     },
     {
         tag: 'title',

package/dist/es/jats/importer/jats-body-transformations.js

@@ -284,4 +284,18 @@ export const jatsBodyTransformations = {
             body.prepend(section);
         }
     },
+    createSuppleMaterials(document, body, createElement) {
+        const suppleMaterials = [
+            ...document.querySelectorAll('article-meta > supplementary-material'),
+        ];
+        if (suppleMaterials.length > 0) {
+            const section = createElement('sec');
+            section.setAttribute('sec-type', 'supplementary-material');
+            const title = createElement('title');
+            title.textContent = 'supplementary-material';
+            section.append(title);
+            section.append(...suppleMaterials);
+            body.prepend(section);
+        }
+    },
 };

package/dist/es/jats/importer/jats-front-parser.js

@@ -15,7 +15,7 @@
  */
 import debug from 'debug';
 import { getTrimmedTextContent } from '../../lib/utils';
-import { buildAffiliation, buildBibliographicName, buildContributor, buildCorresp, buildFootnote, buildJournal, buildSupplementaryMaterial, buildTitles, } from '../../transformer';
+import { buildAffiliation, buildBibliographicName, buildContributor, buildCorresp, buildFootnote, buildJournal, buildTitles, } from '../../transformer';
 import { parseJournalMeta } from './jats-journal-meta-parser';
 import { htmlFromJatsNode } from './jats-parser-utils';
 const warn = debug('manuscripts-transform');
@@ -122,25 +122,6 @@ export const jatsFrontParser = {
         }
         return history;
     },
-    parseSupplements(elements) {
-        var _a, _b, _c, _d;
-        if (!(elements === null || elements === void 0 ? void 0 : elements.length)) {
-            return [];
-        }
-        const supplements = [];
-        for (const element of elements) {
-            const title = (_a = getTrimmedTextContent(element, 'caption > title')) !== null && _a !== void 0 ? _a : '';
-            const href = (_b = element.getAttributeNS(XLINK_NAMESPACE, 'href')) !== null && _b !== void 0 ? _b : '';
-            const supplement = buildSupplementaryMaterial(title, href);
-            const mimeType = (_c = element.getAttribute('mimetype')) !== null && _c !== void 0 ? _c : '';
-            const mimeSubtype = (_d = element.getAttribute('mime-subtype')) !== null && _d !== void 0 ? _d : '';
-            if (mimeType && mimeSubtype) {
-                supplement.MIME = [mimeType, mimeSubtype].join('/');
-            }
-            supplements.push(supplement);
-        }
-        return supplements;
-    },
     parseAffiliations(elements) {
         const affiliationIDs = new Map();
         const affiliations = elements.map((element, priority) => {

package/dist/es/jats/importer/parse-jats-article.js

@@ -40,9 +40,6 @@ export const parseJATSFront = (doc, front) => {
     const authors = jatsFrontParser.parseContributors([
         ...front.querySelectorAll('article-meta > contrib-group > contrib[contrib-type="author"]'),
     ], affiliationIDs, footnoteIDs, correspondingIDs);
-    const supplements = jatsFrontParser.parseSupplements([
-        ...front.querySelectorAll('article-meta > supplementary-material'),
-    ]);
     const history = jatsFrontParser.parseDates(front.querySelector('article-meta > history'));
     const counts = jatsFrontParser.parseCounts(front.querySelector('article-meta counts'));
     const manuscript = Object.assign(Object.assign(Object.assign({}, buildManuscript()), counts), history);
@@ -54,7 +51,6 @@ export const parseJATSFront = (doc, front) => {
         ...authors,
         ...affiliations,
         ...correspondingList,
-        ...supplements,
     ]);
 };
 export const parseJATSBody = (doc, body, references) => {
@@ -65,6 +61,7 @@ export const parseJATSBody = (doc, body, references) => {
     jatsBodyTransformations.createBody(doc, body, createElement);
     jatsBodyTransformations.createAbstracts(doc, body, createElement);
     jatsBodyTransformations.createBackmatter(doc, body, createElement);
+    jatsBodyTransformations.createSuppleMaterials(doc, body, createElement);
     jatsBodyTransformations.createKeywords(doc, body, createElement);
     const node = jatsBodyDOMParser.parse(body).firstChild;
     if (!node) {

package/dist/es/jats/jats-exporter.js

@@ -620,6 +620,8 @@ export class JATSExporter {
                 body: () => ['body', 0],
                 abstracts: () => ['abstract', 0],
                 backmatter: () => ['backmatter', 0],
+                supplement: () => '',
+                supplements: () => '',
                 bibliography_section: (node) => [
                     'ref-list',
                     { id: normalizeID(node.attrs.id) },

package/dist/es/schema/index.js

@@ -64,6 +64,8 @@ import { pullquoteElement } from './nodes/pullquote_element';
 import { section } from './nodes/section';
 import { sectionLabel } from './nodes/section_label';
 import { sectionTitle } from './nodes/section_title';
+import { supplement } from './nodes/supplement';
+import { supplements } from './nodes/supplements';
 import { table, tableBody } from './nodes/table';
 import { tableCol, tableColGroup } from './nodes/table_col';
 import { tableElement } from './nodes/table_element';
@@ -128,6 +130,8 @@ export * from './nodes/table_element_footer';
 export * from './nodes/title';
 export * from './nodes/affiliations';
 export * from './nodes/contributors';
+export * from './nodes/supplement';
+export * from './nodes/supplements';
 export const schema = new Schema({
     marks: {
         bold,
@@ -207,5 +211,7 @@ export const schema = new Schema({
         title,
         affiliations,
         contributors,
+        supplements,
+        supplement,
     },
 });

package/dist/es/schema/nodes/affiliation.js

@@ -1,4 +1,5 @@
 export const affiliation = {
+    content: 'inline*',
     attrs: {
         id: { default: '' },
         institution: { default: '' },
@@ -8,6 +9,8 @@ export const affiliation = {
         addressLine3: { default: '' },
         postCode: { default: '' },
         country: { default: '' },
+        county: { default: '' },
+        city: { default: '' },
         priority: { default: undefined },
         email: {
             default: {
@@ -17,7 +20,7 @@ export const affiliation = {
         },
         dataTracked: { default: null },
     },
-    group: 'block element',
+    group: 'block',
     parseDOM: [
         {
             tag: 'div.affiliation',

package/dist/es/schema/nodes/contributor.js

@@ -3,6 +3,7 @@ export const contributor = {
     attrs: {
         id: { default: '' },
         role: { default: '' },
+        email: { default: '' },
         affiliations: { default: [] },
         footnote: { default: undefined },
         corresp: { default: undefined },
@@ -10,12 +11,13 @@ export const contributor = {
         userID: { default: undefined },
         invitationID: { default: undefined },
         isCorresponding: { default: undefined },
+        isJointContributor: { default: undefined },
         ORCIDIdentifier: { default: undefined },
         priority: { default: undefined },
         dataTracked: { default: null },
         contents: { default: '' },
     },
-    group: 'block element',
+    group: 'block',
     toDOM: (node) => {
         const contributorNode = node;
         return [

package/dist/es/schema/nodes/manuscript.js

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 export const manuscript = {
-    content: 'title? contributors? affiliations? keywords? abstracts body backmatter comments',
+    content: 'title? contributors? affiliations? keywords? supplements? abstracts body backmatter comments',
     attrs: {
         id: { default: '' },
     },

package/dist/es/schema/nodes/supplement.js

@@ -0,0 +1,60 @@
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+export const supplement = {
+    attrs: {
+        id: { default: '' },
+        href: { default: '' },
+        mimeType: { default: '' },
+        mimeSubType: { default: '' },
+        title: { default: '' },
+        dataTracked: { default: null },
+    },
+    group: 'block',
+    parseDOM: [
+        {
+            tag: 'div.supplement',
+            getAttrs: (dom) => {
+                const el = dom;
+                const id = el.getAttribute('id');
+                const href = el.getAttribute('href');
+                const mimeType = el.getAttribute('mimeType');
+                const mimeSubType = el.getAttribute('mimeSubType');
+                const title = el.textContent;
+                return {
+                    id,
+                    href,
+                    mimeType,
+                    mimeSubType,
+                    title,
+                };
+            },
+        },
+    ],
+    toDOM: (node) => {
+        const supplement = node;
+        return [
+            'div',
+            {
+                id: supplement.attrs.id,
+                class: 'Supplement',
+                href: node.attrs.href,
+                mimeType: node.attrs.mimeType,
+                mimeSubType: node.attrs.mimeSubType,
+                title: node.attrs.title,
+            },
+        ];
+    },
+};

package/dist/es/schema/nodes/supplements.js

@@ -0,0 +1,42 @@
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+export const supplements = {
+    content: 'section_title supplement*',
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+    },
+    group: 'block',
+    selectable: false,
+    parseDOM: [
+        {
+            tag: 'div.supplements',
+        },
+    ],
+    toDOM: (node) => {
+        const supplements = node;
+        return [
+            'div',
+            {
+                id: supplements.attrs.id,
+                class: 'supplements',
+                spellcheck: 'false',
+                contenteditable: false,
+            },
+            0,
+        ];
+    },
+};

package/dist/es/transformer/decode.js

@@ -55,6 +55,7 @@ const getSections = (modelMap) => getModelsByType(modelMap, ObjectTypes.Section)
 const getAffiliations = (modelMap) => getModelsByType(modelMap, ObjectTypes.Affiliation);
 const getContributors = (modelMap) => getModelsByType(modelMap, ObjectTypes.Contributor);
 const getKeywordElements = (modelMap) => getModelsByType(modelMap, ObjectTypes.KeywordsElement);
+const getSupplements = (modelMap) => getModelsByType(modelMap, ObjectTypes.Supplement);
 const getKeywordGroups = (modelMap) => getModelsByType(modelMap, ObjectTypes.KeywordGroup);
 const getKeywords = (modelMap) => getModelsByType(modelMap, ObjectTypes.Keyword);
 const getTitles = (modelMap) => getModelsByType(modelMap, ObjectTypes.Titles)[0];
@@ -93,6 +94,15 @@ export class Decoder {
             ...elements,
         ]);
     }
+    createSupplementsNode() {
+        const elements = getSupplements(this.modelMap)
+            .map((e) => this.decode(e))
+            .filter(Boolean);
+        return schema.nodes.supplements.createAndFill({}, [
+            schema.nodes.section_title.create({}, schema.text('SupplementaryMaterials')),
+            ...elements,
+        ]);
+    }
     createCommentsNode() {
         return schema.nodes.comments.createAndFill({}, [
             ...this.comments.values(),
@@ -609,6 +619,8 @@ export class Decoder {
                     addressLine3: model.addressLine3,
                     postCode: model.postCode,
                     country: model.country,
+                    county: model.county,
+                    city: model.city,
                     email: model.email,
                     department: model.department,
                     priority: model.priority,
@@ -620,6 +632,8 @@ export class Decoder {
                     id: model._id,
                     role: model.role,
                     affiliations: model.affiliations,
+                    email: model.email,
+                    isJointContributor: model.isJointContributor,
                     bibliographicName: model.bibliographicName,
                     userID: model.userID,
                     invitationID: model.invitationID,
@@ -630,6 +644,17 @@ export class Decoder {
                     priority: model.priority,
                 }, schema.text('_'));
             },
+            [ObjectTypes.Supplement]: (data) => {
+                var _a, _b;
+                const model = data;
+                return schema.nodes.supplement.create({
+                    id: model._id,
+                    href: model.href,
+                    mimeType: (_a = model.MIME) === null || _a === void 0 ? void 0 : _a.split('/')[0],
+                    mimeSubType: (_b = model.MIME) === null || _b === void 0 ? void 0 : _b.split('/')[1],
+                    title: model.title,
+                });
+            },
         };
         this.decode = (model) => {
             if (!this.creators[model.objectType]) {
@@ -644,6 +669,7 @@ export class Decoder {
             const contributors = this.createContributorsNode();
             const affiliations = this.createAffiliationsNode();
             const keywords = this.createKeywordsNode();
+            const suppl = this.createSupplementsNode();
             const { abstracts, body, backmatter } = this.createContentSections();
             const comments = this.createCommentsNode();
             const contents = [
@@ -651,6 +677,7 @@ export class Decoder {
                 contributors,
                 affiliations,
                 keywords,
+                suppl,
                 abstracts,
                 body,
                 backmatter,

package/dist/es/transformer/encode.js

@@ -500,8 +500,11 @@ const encoders = {
         addressLine1: node.attrs.addressLine1,
         addressLine2: node.attrs.addressLine2,
         addressLine3: node.attrs.addressLine3,
+        department: node.attrs.department,
         postCode: node.attrs.postCode,
         country: node.attrs.country,
+        county: node.attrs.county,
+        city: node.attrs.city,
         email: node.attrs.email,
         priority: node.attrs.priority,
     }),
@@ -512,11 +515,19 @@ const encoders = {
         userID: node.attrs.userID,
         invitationID: node.attrs.invitationID,
         isCorresponding: node.attrs.isCorresponding,
+        isJointContributor: node.attrs.isJointContributor,
         ORCIDIdentifier: node.attrs.ORCIDIdentifier,
         footnote: node.attrs.footnote,
         corresp: node.attrs.corresp,
         priority: node.attrs.priority,
     }),
+    supplement: (node) => ({
+        href: node.attrs.href,
+        title: node.attrs.title,
+        MIME: node.attrs.mimeType && node.attrs.mimeSubType
+            ? [node.attrs.mimeType, node.attrs.mimeSubType].join('/')
+            : '',
+    }),
 };
 const modelData = (node, parent, path, priority) => {
     const encoder = encoders[node.type.name];
@@ -544,6 +555,7 @@ const containerTypes = [
     schema.nodes.contributors,
     schema.nodes.affiliations,
     schema.nodes.keywords,
+    schema.nodes.supplements,
     schema.nodes.abstracts,
     schema.nodes.body,
     schema.nodes.backmatter,

package/dist/es/transformer/node-types.js

@@ -58,6 +58,7 @@ export const nodeTypesMap = new Map([
     [schema.nodes.contributors, ObjectTypes.Section],
     [schema.nodes.affiliations, ObjectTypes.Section],
     [schema.nodes.title, ObjectTypes.Titles],
+    [schema.nodes.supplement, ObjectTypes.Supplement],
 ]);
 export const isExecutableNodeType = (type) => hasGroup(type, GROUP_EXECUTABLE);
 export const isElementNodeType = (type) => hasGroup(type, GROUP_ELEMENT);

package/dist/types/jats/importer/jats-body-transformations.d.ts

@@ -34,4 +34,5 @@ export declare const jatsBodyTransformations: {
     fixTables(body: Element, createElement: (tagName: string) => HTMLElement): void;
     moveFloatsGroupToBody(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
     createKeywords(document: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
+    createSuppleMaterials(document: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
 };

package/dist/types/jats/importer/jats-front-parser.d.ts

@@ -58,7 +58,6 @@ export declare const jatsFrontParser: {
         revisionReceiveDate?: number | undefined;
         receiveDate?: number | undefined;
     } | undefined;
-    parseSupplements(elements: Element[] | null): import("../../transformer").Build<import("@manuscripts/json-schema/dist/types").Supplement>[];
     parseAffiliations(elements: Element[]): {
         affiliations: import("../../transformer").Build<import("@manuscripts/json-schema/dist/types").Affiliation>[];
         affiliationIDs: Map<string, string>;

package/dist/types/schema/index.d.ts

@@ -70,4 +70,6 @@ export * from './nodes/table_element_footer';
 export * from './nodes/title';
 export * from './nodes/affiliations';
 export * from './nodes/contributors';
+export * from './nodes/supplement';
+export * from './nodes/supplements';
 export declare const schema: Schema<Nodes, Marks>;

package/dist/types/schema/nodes/affiliation.d.ts

@@ -13,6 +13,8 @@ interface Attrs {
     addressLine3: string;
     postCode: string;
     country: string;
+    county: string;
+    city: string;
     email: Email;
     priority: number;
 }

package/dist/types/schema/nodes/contributor.d.ts

@@ -1,16 +1,18 @@
-import { Affiliation, BibliographicName } from '@manuscripts/json-schema';
+import { BibliographicName } from '@manuscripts/json-schema';
 import { NodeSpec } from 'prosemirror-model';
 import { ManuscriptNode } from '../types';
 interface Attrs {
     id: string;
     role: string;
-    affiliations: Affiliation[];
+    affiliations: string[];
     bibliographicName: BibliographicName;
     userID: string;
+    email: string;
     invitationID: string;
     isCorresponding: boolean;
     ORCIDIdentifier: string;
     priority: number;
+    isJointContributor: boolean;
 }
 export interface ContributorNode extends ManuscriptNode {
     attrs: Attrs;

package/dist/types/schema/nodes/supplement.d.ts

@@ -0,0 +1,29 @@
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { NodeSpec } from 'prosemirror-model';
+import { ManuscriptNode } from '../types';
+interface Attrs {
+    id: string;
+    href: string;
+    mimeType: string;
+    mimeSubType: string;
+    title: string;
+}
+export interface SupplementNode extends ManuscriptNode {
+    attrs: Attrs;
+}
+export declare const supplement: NodeSpec;
+export {};

package/dist/types/schema/nodes/supplements.d.ts

@@ -0,0 +1,25 @@
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { NodeSpec } from 'prosemirror-model';
+import { ManuscriptNode } from '../types';
+interface Attrs {
+    id: string;
+}
+export interface SupplementsNode extends ManuscriptNode {
+    attrs: Attrs;
+}
+export declare const supplements: NodeSpec;
+export {};

package/dist/types/schema/types.d.ts

@@ -17,7 +17,7 @@ import { Fragment, Mark as ProsemirrorMark, MarkType, Node as ProsemirrorNode, N
 import { EditorState, NodeSelection, Plugin, TextSelection, Transaction } from 'prosemirror-state';
 import { EditorView, NodeView } from 'prosemirror-view';
 export type Marks = 'bold' | 'code' | 'italic' | 'smallcaps' | 'strikethrough' | 'styled' | 'subscript' | 'superscript' | 'underline' | 'tracked_insert' | 'tracked_delete';
-export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comments' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keyword_group' | 'keywords' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'abstracts' | 'body' | 'backmatter' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'contributor' | 'table_element_footer' | 'title' | 'affiliations' | 'contributors';
+export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comments' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keyword_group' | 'keywords' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'abstracts' | 'body' | 'backmatter' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'contributor' | 'table_element_footer' | 'title' | 'affiliations' | 'contributors' | 'supplements' | 'supplement';
 export type ManuscriptSchema = Schema<Nodes, Marks>;
 export type ManuscriptEditorState = EditorState;
 export type ManuscriptEditorView = EditorView;

package/dist/types/transformer/decode.d.ts

@@ -28,6 +28,7 @@ export declare class Decoder {
     private createAffiliationsNode;
     private createContributorsNode;
     private createKeywordsNode;
+    private createSupplementsNode;
     private createCommentsNode;
     private createContentSections;
     private createCommentNodes;

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "2.0.4",
+  "version": "2.1.1",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",
@@ -78,4 +78,4 @@
     "rimraf": "^3.0.2",
     "typescript": "^4.0.5"
   }
-}
+}