@manuscripts/transform 2.0.3 → 2.0.4-LEAN-3092

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (53) hide show
  1. package/dist/cjs/index.js +0 -1
  2. package/dist/cjs/jats/importer/jats-body-dom-parser.js +24 -72
  3. package/dist/cjs/jats/importer/jats-body-transformations.js +0 -8
  4. package/dist/cjs/jats/importer/parse-jats-article.js +0 -1
  5. package/dist/cjs/jats/jats-exporter.js +17 -37
  6. package/dist/cjs/schema/index.js +0 -1
  7. package/dist/cjs/schema/nodes/equation.js +12 -14
  8. package/dist/cjs/schema/nodes/equation_element.js +4 -5
  9. package/dist/cjs/schema/nodes/inline_equation.js +12 -16
  10. package/dist/cjs/schema/nodes/table_element.js +1 -1
  11. package/dist/cjs/transformer/builders.js +1 -8
  12. package/dist/cjs/transformer/decode.js +5 -8
  13. package/dist/cjs/transformer/encode.js +4 -25
  14. package/dist/cjs/transformer/node-types.js +0 -1
  15. package/dist/cjs/transformer/object-types.js +0 -1
  16. package/dist/es/index.js +0 -1
  17. package/dist/es/jats/importer/jats-body-dom-parser.js +25 -73
  18. package/dist/es/jats/importer/jats-body-transformations.js +0 -8
  19. package/dist/es/jats/importer/parse-jats-article.js +0 -1
  20. package/dist/es/jats/jats-exporter.js +17 -37
  21. package/dist/es/schema/index.js +0 -1
  22. package/dist/es/schema/nodes/equation.js +12 -14
  23. package/dist/es/schema/nodes/equation_element.js +4 -5
  24. package/dist/es/schema/nodes/inline_equation.js +12 -16
  25. package/dist/es/schema/nodes/table_element.js +1 -1
  26. package/dist/es/transformer/builders.js +0 -6
  27. package/dist/es/transformer/decode.js +5 -8
  28. package/dist/es/transformer/encode.js +4 -25
  29. package/dist/es/transformer/node-types.js +0 -1
  30. package/dist/es/transformer/object-types.js +0 -1
  31. package/dist/types/index.d.ts +0 -1
  32. package/dist/types/jats/importer/jats-body-transformations.d.ts +0 -1
  33. package/dist/types/schema/index.d.ts +0 -1
  34. package/dist/types/schema/nodes/equation.d.ts +3 -4
  35. package/dist/types/schema/nodes/equation_element.d.ts +1 -2
  36. package/dist/types/schema/nodes/inline_equation.d.ts +4 -4
  37. package/dist/types/transformer/builders.d.ts +1 -2
  38. package/package.json +3 -4
  39. package/dist/cjs/mathjax/index.js +0 -41
  40. package/dist/cjs/mathjax/mathjax-packages.js +0 -20
  41. package/dist/cjs/mathjax/mathml-to-svg.js +0 -70
  42. package/dist/cjs/mathjax/tex-to-mathml.js +0 -49
  43. package/dist/cjs/mathjax/tex-to-svg.js +0 -59
  44. package/dist/es/mathjax/index.js +0 -12
  45. package/dist/es/mathjax/mathjax-packages.js +0 -17
  46. package/dist/es/mathjax/mathml-to-svg.js +0 -66
  47. package/dist/es/mathjax/tex-to-mathml.js +0 -45
  48. package/dist/es/mathjax/tex-to-svg.js +0 -55
  49. package/dist/types/mathjax/index.d.ts +0 -3
  50. package/dist/types/mathjax/mathjax-packages.d.ts +0 -16
  51. package/dist/types/mathjax/mathml-to-svg.d.ts +0 -17
  52. package/dist/types/mathjax/tex-to-mathml.d.ts +0 -17
  53. package/dist/types/mathjax/tex-to-svg.d.ts +0 -17
@@ -15,10 +15,8 @@
15
15
  */
16
16
  import mime from 'mime';
17
17
  import { DOMParser, Fragment } from 'prosemirror-model';
18
- import { convertMathMLToSVG } from '../../mathjax/mathml-to-svg';
19
- import { convertTeXToSVG } from '../../mathjax/tex-to-svg';
20
18
  import { schema } from '../../schema';
21
- import { chooseSectionCategory, xmlSerializer } from '../../transformer';
19
+ import { chooseSectionCategory } from '../../transformer';
22
20
  const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
23
21
  const chooseContentType = (graphicNode) => {
24
22
  if (graphicNode) {
@@ -33,6 +31,24 @@ const chooseContentType = (graphicNode) => {
33
31
  }
34
32
  }
35
33
  };
34
+ const getEquationContent = (p) => {
35
+ var _a;
36
+ const element = p;
37
+ const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
38
+ let contents = '';
39
+ let format = '';
40
+ for (const child of container.childNodes) {
41
+ const nodeName = child.nodeName.replace(/^[a-z]:/, '');
42
+ switch (nodeName) {
43
+ case 'tex-math':
44
+ case 'mml:math':
45
+ contents = child.outerHTML;
46
+ format = nodeName === 'tex-math' ? 'tex' : 'mathml';
47
+ break;
48
+ }
49
+ }
50
+ return { format, contents };
51
+ };
36
52
  const marks = [
37
53
  {
38
54
  tag: 'bold',
@@ -141,91 +157,27 @@ const nodes = [
141
157
  tag: 'inline-formula',
142
158
  node: 'inline_equation',
143
159
  getAttrs: (node) => {
144
- var _a, _b, _c, _d, _e;
145
160
  const element = node;
146
- const attrs = {
147
- id: element.getAttribute('id'),
148
- MathMLRepresentation: '',
149
- SVGRepresentation: '',
150
- TeXRepresentation: '',
151
- };
152
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
153
- for (const child of container.childNodes) {
154
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
155
- switch (nodeName) {
156
- case 'tex-math':
157
- attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
158
- if (attrs.TeXRepresentation) {
159
- attrs.SVGRepresentation =
160
- (_d = convertTeXToSVG(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
161
- }
162
- break;
163
- case 'mml:math':
164
- ;
165
- child.removeAttribute('id');
166
- attrs.MathMLRepresentation = xmlSerializer.serializeToString(child);
167
- if (attrs.MathMLRepresentation) {
168
- attrs.SVGRepresentation =
169
- (_e = convertMathMLToSVG(attrs.MathMLRepresentation, true)) !== null && _e !== void 0 ? _e : '';
170
- }
171
- break;
172
- }
173
- }
174
- return attrs;
161
+ return getEquationContent(element);
175
162
  },
176
163
  },
177
164
  {
178
165
  tag: 'disp-formula',
179
166
  node: 'equation_element',
180
167
  getAttrs: (node) => {
168
+ var _a, _b;
181
169
  const element = node;
182
- const caption = element.querySelector('figcaption');
183
170
  return {
184
171
  id: element.getAttribute('id'),
185
- suppressCaption: !caption,
172
+ label: (_b = (_a = element.querySelector('label')) === null || _a === void 0 ? void 0 : _a.textContent) !== null && _b !== void 0 ? _b : '',
186
173
  };
187
174
  },
188
175
  getContent: (node, schema) => {
189
- var _a, _b, _c, _d, _e;
190
176
  const element = node;
191
- const attrs = {
192
- MathMLStringRepresentation: '',
193
- SVGStringRepresentation: '',
194
- TeXRepresentation: '',
195
- };
196
- const container = (_a = element.querySelector('alternatives')) !== null && _a !== void 0 ? _a : element;
197
- for (const child of container.childNodes) {
198
- const nodeName = child.nodeName.replace(/^[a-z]:/, '');
199
- switch (nodeName) {
200
- case 'tex-math':
201
- attrs.TeXRepresentation = (_c = (_b = child.textContent) === null || _b === void 0 ? void 0 : _b.trim()) !== null && _c !== void 0 ? _c : '';
202
- if (attrs.TeXRepresentation) {
203
- attrs.SVGStringRepresentation =
204
- (_d = convertTeXToSVG(attrs.TeXRepresentation, true)) !== null && _d !== void 0 ? _d : '';
205
- }
206
- break;
207
- case 'mml:math':
208
- ;
209
- child.removeAttribute('id');
210
- attrs.MathMLStringRepresentation =
211
- xmlSerializer.serializeToString(child);
212
- if (attrs.MathMLStringRepresentation) {
213
- attrs.SVGStringRepresentation =
214
- (_e = convertMathMLToSVG(attrs.MathMLStringRepresentation, true)) !== null && _e !== void 0 ? _e : '';
215
- }
216
- break;
217
- }
218
- }
219
- const caption = element.querySelector('figcaption');
220
- const figcaption = schema.nodes.figcaption.create();
177
+ const attrs = getEquationContent(element);
178
+ const id = element.getAttribute('id');
221
179
  return Fragment.from([
222
- schema.nodes.equation.createChecked(attrs),
223
- caption
224
- ?
225
- jatsBodyDOMParser.parse(caption, {
226
- topNode: figcaption,
227
- })
228
- : figcaption,
180
+ schema.nodes.equation.createChecked(Object.assign({ id }, attrs)),
229
181
  ]);
230
182
  },
231
183
  },
@@ -262,14 +262,6 @@ export const jatsBodyTransformations = {
262
262
  }
263
263
  });
264
264
  },
265
- moveTableFooterToEnd(body) {
266
- const footers = body.querySelectorAll('table-wrap-foot');
267
- for (const footer of footers) {
268
- if (footer.parentNode) {
269
- footer.parentNode.appendChild(footer);
270
- }
271
- }
272
- },
273
265
  moveFloatsGroupToBody(doc, body, createElement) {
274
266
  const group = doc.querySelector('floats-group');
275
267
  if (group) {
@@ -62,7 +62,6 @@ export const parseJATSBody = (doc, body, references) => {
62
62
  jatsBodyTransformations.ensureSection(body, createElement);
63
63
  jatsBodyTransformations.moveCaptionsToEnd(body);
64
64
  jatsBodyTransformations.fixTables(body, createElement);
65
- jatsBodyTransformations.moveTableFooterToEnd(body);
66
65
  jatsBodyTransformations.createBody(doc, body, createElement);
67
66
  jatsBodyTransformations.createAbstracts(doc, body, createElement);
68
67
  jatsBodyTransformations.createBackmatter(doc, body, createElement);
@@ -156,6 +156,7 @@ export class JATSExporter {
156
156
  };
157
157
  this.nodeFromJATS = (JATSFragment) => {
158
158
  JATSFragment = JATSFragment.trim();
159
+ JATSFragment = JATSFragment.replace(' ', ' ');
159
160
  if (!JATSFragment.length) {
160
161
  return null;
161
162
  }
@@ -676,22 +677,23 @@ export class JATSExporter {
676
677
  },
677
678
  doc: () => '',
678
679
  equation: (node) => {
679
- const formula = this.document.createElement('disp-formula');
680
- formula.setAttribute('id', normalizeID(node.attrs.id));
681
- if (node.attrs.TeXRepresentation) {
682
- const math = this.document.createElement('tex-math');
683
- math.textContent = node.attrs.TeXRepresentation;
684
- formula.appendChild(math);
685
- }
686
- else if (node.attrs.MathMLStringRepresentation) {
687
- const math = this.nodeFromJATS(node.attrs.MathMLStringRepresentation);
688
- if (math) {
689
- formula.appendChild(math);
690
- }
691
- }
692
- return formula;
680
+ const math = this.nodeFromJATS(node.attrs.contents);
681
+ const mathEl = math;
682
+ mathEl.setAttribute('id', normalizeID(node.attrs.id));
683
+ return mathEl;
684
+ },
685
+ inline_equation: (node) => {
686
+ const eqElement = this.document.createElement('inline-formula');
687
+ const math = this.nodeFromJATS(node.attrs.contents);
688
+ eqElement.append(math);
689
+ return eqElement;
690
+ },
691
+ equation_element: (node) => {
692
+ const eqElement = this.document.createElement('disp-formula');
693
+ eqElement.setAttribute('id', normalizeID(node.attrs.id));
694
+ processChildNodes(eqElement, node, schema.nodes.equation);
695
+ return eqElement;
693
696
  },
694
- equation_element: (node) => createFigureElement(node, 'fig', node.type.schema.nodes.equation, 'equation'),
695
697
  figcaption: (node) => {
696
698
  if (!node.textContent) {
697
699
  return '';
@@ -741,28 +743,6 @@ export class JATSExporter {
741
743
  },
742
744
  hard_break: () => '',
743
745
  highlight_marker: () => '',
744
- inline_equation: (node) => {
745
- const formula = this.document.createElement('inline-formula');
746
- formula.setAttribute('id', normalizeID(node.attrs.id));
747
- if (node.attrs.TeXRepresentation) {
748
- const math = this.document.createElement('tex-math');
749
- math.textContent = node.attrs.TeXRepresentation;
750
- formula.appendChild(math);
751
- }
752
- else if (node.attrs.MathMLRepresentation) {
753
- const math = this.nodeFromJATS(node.attrs.MathMLRepresentation);
754
- if (math) {
755
- formula.appendChild(math);
756
- }
757
- }
758
- else if (node.attrs.SVGRepresentation) {
759
- const math = this.nodeFromJATS(node.attrs.SVGRepresentation);
760
- if (math) {
761
- formula.appendChild(math);
762
- }
763
- }
764
- return formula;
765
- },
766
746
  inline_footnote: (node) => {
767
747
  const xref = this.document.createElement('xref');
768
748
  xref.setAttribute('ref-type', 'fn');
@@ -98,7 +98,6 @@ export * from './nodes/footnotes_section';
98
98
  export * from './nodes/graphical_abstract_section';
99
99
  export * from './nodes/hard_break';
100
100
  export * from './nodes/highlight_marker';
101
- export * from './nodes/inline_equation';
102
101
  export * from './nodes/inline_footnote';
103
102
  export * from './nodes/keyword';
104
103
  export * from './nodes/keywords_element';
@@ -1,5 +1,5 @@
1
1
  /*!
2
- * © 2019 Atypon Systems LLC
2
+ * © 2023 Atypon Systems LLC
3
3
  *
4
4
  * Licensed under the Apache License, Version 2.0 (the "License");
5
5
  * you may not use this file except in compliance with the License.
@@ -17,9 +17,8 @@ import { ObjectTypes } from '@manuscripts/json-schema';
17
17
  export const equation = {
18
18
  attrs: {
19
19
  id: { default: '' },
20
- MathMLStringRepresentation: { default: '' },
21
- SVGStringRepresentation: { default: '' },
22
- TeXRepresentation: { default: '' },
20
+ contents: { default: '' },
21
+ format: { default: '' },
23
22
  dataTracked: { default: null },
24
23
  },
25
24
  group: 'block',
@@ -27,26 +26,25 @@ export const equation = {
27
26
  {
28
27
  tag: `div.${ObjectTypes.Equation}`,
29
28
  getAttrs: (p) => {
30
- const dom = p;
29
+ const htmlEl = p;
31
30
  return {
32
- id: dom.getAttribute('id'),
33
- MathMLStringRepresentation: dom.getAttribute('data-mathml-string-representation'),
34
- SVGStringRepresentation: dom.innerHTML,
35
- TeXRepresentation: dom.getAttribute('data-tex-representation'),
31
+ id: htmlEl.getAttribute('id'),
32
+ format: htmlEl.getAttribute('data-equation-format'),
33
+ contents: htmlEl.innerHTML,
36
34
  };
37
35
  },
38
36
  },
39
37
  ],
40
38
  toDOM: (node) => {
41
39
  const equationNode = node;
40
+ const { id, contents, format } = equationNode.attrs;
42
41
  const dom = document.createElement('div');
43
- dom.setAttribute('id', equationNode.attrs.id);
44
42
  dom.classList.add(ObjectTypes.Equation);
45
- if (equationNode.attrs.MathMLStringRepresentation) {
46
- dom.setAttribute('data-mathml-string-representation', equationNode.attrs.MathMLStringRepresentation);
43
+ dom.setAttribute('id', id);
44
+ if (format) {
45
+ dom.setAttribute('data-equation-format', format);
47
46
  }
48
- dom.setAttribute('data-tex-representation', equationNode.attrs.TeXRepresentation);
49
- dom.innerHTML = equationNode.attrs.SVGStringRepresentation;
47
+ dom.innerHTML = contents;
50
48
  return dom;
51
49
  },
52
50
  };
@@ -14,11 +14,10 @@
14
14
  * limitations under the License.
15
15
  */
16
16
  export const equationElement = {
17
- content: '(equation | placeholder) figcaption',
17
+ content: '(equation | placeholder)',
18
18
  attrs: {
19
19
  id: { default: '' },
20
- suppressCaption: { default: true },
21
- suppressTitle: { default: undefined },
20
+ label: { default: '' },
22
21
  dataTracked: { default: null },
23
22
  comments: { default: null },
24
23
  },
@@ -26,7 +25,7 @@ export const equationElement = {
26
25
  group: 'block element',
27
26
  parseDOM: [
28
27
  {
29
- tag: 'figure.equation',
28
+ tag: 'div.equation',
30
29
  getAttrs: (p) => {
31
30
  const dom = p;
32
31
  return {
@@ -38,7 +37,7 @@ export const equationElement = {
38
37
  toDOM: (node) => {
39
38
  const equationElementNode = node;
40
39
  return [
41
- 'figure',
40
+ 'div',
42
41
  {
43
42
  class: 'equation',
44
43
  id: equationElementNode.attrs.id,
@@ -13,43 +13,39 @@
13
13
  * See the License for the specific language governing permissions and
14
14
  * limitations under the License.
15
15
  */
16
- import { ObjectTypes } from '@manuscripts/json-schema';
17
16
  export const inlineEquation = {
18
17
  attrs: {
19
- id: { default: '' },
20
- MathMLRepresentation: { default: '' },
21
- SVGRepresentation: { default: '' },
22
- TeXRepresentation: { default: '' },
23
18
  dataTracked: { default: null },
19
+ comments: { default: null },
20
+ contents: { default: '' },
21
+ format: { default: '' },
24
22
  },
23
+ selectable: false,
25
24
  atom: true,
26
25
  inline: true,
27
26
  draggable: true,
28
27
  group: 'inline',
29
28
  parseDOM: [
30
29
  {
31
- tag: `span.${ObjectTypes.InlineMathFragment}`,
30
+ tag: `span.MPInlineMathFragment`,
32
31
  getAttrs: (p) => {
33
32
  const dom = p;
34
33
  return {
35
- id: dom.getAttribute('id'),
36
- MathMLRepresentation: dom.getAttribute('data-mathml-representation') || '',
37
- SVGRepresentation: dom.innerHTML || '',
38
- TeXRepresentation: dom.getAttribute('data-tex-representation') || '',
34
+ format: dom.getAttribute('data-equation-format'),
35
+ contents: dom.innerHTML,
39
36
  };
40
37
  },
41
38
  },
42
39
  ],
43
40
  toDOM: (node) => {
44
41
  const inlineEquationNode = node;
42
+ const { contents, format } = inlineEquationNode.attrs;
45
43
  const dom = document.createElement('span');
46
- dom.classList.add(ObjectTypes.InlineMathFragment);
47
- dom.setAttribute('id', inlineEquationNode.attrs.id);
48
- dom.setAttribute('data-tex-representation', inlineEquationNode.attrs.TeXRepresentation);
49
- if (inlineEquationNode.attrs.MathMLRepresentation) {
50
- dom.setAttribute('data-mathml-representation', inlineEquationNode.attrs.MathMLRepresentation);
44
+ dom.classList.add('MPInlineMathFragment');
45
+ if (format) {
46
+ dom.setAttribute('data-equation-format', format);
51
47
  }
52
- dom.innerHTML = inlineEquationNode.attrs.SVGRepresentation;
48
+ dom.innerHTML = contents;
53
49
  return dom;
54
50
  },
55
51
  };
@@ -14,7 +14,7 @@
14
14
  * limitations under the License.
15
15
  */
16
16
  export const tableElement = {
17
- content: '(table | placeholder) figcaption? table_element_footer? (listing | placeholder)',
17
+ content: '(table | placeholder) table_element_footer? figcaption? (listing | placeholder)',
18
18
  attrs: {
19
19
  id: { default: '' },
20
20
  paragraphStyle: { default: '' },
@@ -95,12 +95,6 @@ export const buildNote = (target, source, contents = '') => ({
95
95
  source,
96
96
  contents,
97
97
  });
98
- export const buildInlineMathFragment = (containingObject, TeXRepresentation) => ({
99
- _id: generateID(ObjectTypes.InlineMathFragment),
100
- objectType: ObjectTypes.InlineMathFragment,
101
- containingObject: containingObject || undefined,
102
- TeXRepresentation,
103
- });
104
98
  export const buildFootnote = (containingObject, contents, kind = 'footnote') => ({
105
99
  _id: generateID(ObjectTypes.Footnote),
106
100
  objectType: ObjectTypes.Footnote,
@@ -262,9 +262,8 @@ export class Decoder {
262
262
  const model = data;
263
263
  return schema.nodes.equation.createChecked({
264
264
  id: model._id,
265
- MathMLStringRepresentation: model.MathMLStringRepresentation,
266
- SVGStringRepresentation: model.SVGStringRepresentation,
267
- TeXRepresentation: model.TeXRepresentation,
265
+ contents: model.contents,
266
+ format: model.format,
268
267
  });
269
268
  },
270
269
  [ObjectTypes.EquationElement]: (data) => {
@@ -283,12 +282,10 @@ export class Decoder {
283
282
  else {
284
283
  throw new MissingElement(model.containedObjectID);
285
284
  }
286
- const figcaption = this.getFigcaption(model);
287
285
  return schema.nodes.equation_element.createChecked({
288
286
  id: model._id,
289
- suppressCaption: Boolean(model.suppressCaption),
290
- suppressTitle: Boolean(model.suppressTitle === undefined ? true : model.suppressTitle),
291
- }, [equation, figcaption]);
287
+ label: model.label,
288
+ }, [equation]);
292
289
  },
293
290
  [ObjectTypes.FootnotesElement]: (data) => {
294
291
  const foonotesElementModel = data;
@@ -555,7 +552,7 @@ export class Decoder {
555
552
  const comments = this.createCommentNodes(model);
556
553
  comments.forEach((c) => this.comments.set(c.attrs.id, c));
557
554
  const content = tableElementFooter
558
- ? [table, figcaption, tableElementFooter]
555
+ ? [table, tableElementFooter, figcaption]
559
556
  : [table, figcaption];
560
557
  if (model.listingID) {
561
558
  const listing = this.createListing(model.listingID);
@@ -54,12 +54,6 @@ const listContents = (node) => {
54
54
  }
55
55
  return serializeToXML(output);
56
56
  };
57
- const svgDefs = (svg) => {
58
- const template = document.createElement('template');
59
- template.innerHTML = svg.trim();
60
- const defs = template.content.querySelector('defs');
61
- return defs ? serializeToXML(defs) : undefined;
62
- };
63
57
  const tableRowDisplayStyle = (tagName, parent) => {
64
58
  switch (tagName) {
65
59
  case 'thead':
@@ -345,20 +339,12 @@ const encoders = {
345
339
  : false,
346
340
  }),
347
341
  equation: (node) => ({
348
- MathMLStringRepresentation: node.attrs.MathMLStringRepresentation || undefined,
349
- TeXRepresentation: node.attrs.TeXRepresentation,
350
- SVGStringRepresentation: node.attrs.SVGStringRepresentation,
342
+ contents: node.attrs.contents,
343
+ format: node.attrs.format,
351
344
  }),
352
345
  equation_element: (node) => ({
353
346
  containedObjectID: attributeOfNodeType(node, 'equation', 'id'),
354
- caption: inlineContentOfChildNodeType(node, node.type.schema.nodes.figcaption, node.type.schema.nodes.caption),
355
- title: inlineContentOfChildNodeType(node, node.type.schema.nodes.figcaption, node.type.schema.nodes.caption_title, false),
356
- elementType: 'p',
357
- suppressCaption: Boolean(node.attrs.suppressCaption) || undefined,
358
- suppressTitle: node.attrs.suppressTitle === undefined ||
359
- node.attrs.suppressTitle === true
360
- ? undefined
361
- : false,
347
+ label: node.attrs.label,
362
348
  }),
363
349
  figure: (node) => ({
364
350
  contentType: node.attrs.contentType || undefined,
@@ -405,12 +391,6 @@ const encoders = {
405
391
  .map((childNode) => childNode.attrs.id)
406
392
  .filter((id) => id),
407
393
  }),
408
- inline_equation: (node, parent) => ({
409
- containingObject: parent.attrs.id,
410
- TeXRepresentation: node.attrs.TeXRepresentation,
411
- SVGRepresentation: node.attrs.SVGRepresentation,
412
- SVGGlyphs: svgDefs(node.attrs.SVGRepresentation),
413
- }),
414
394
  keyword: (node, parent) => ({
415
395
  containedGroup: parent.attrs.id,
416
396
  name: keywordContents(node),
@@ -571,8 +551,7 @@ export const encode = (node) => {
571
551
  if (placeholderTypes.includes(child.type)) {
572
552
  return;
573
553
  }
574
- if (parent.type === schema.nodes.paragraph &&
575
- child.type !== schema.nodes.inline_equation) {
554
+ if (parent.type === schema.nodes.paragraph) {
576
555
  return;
577
556
  }
578
557
  const { model, markers } = modelFromNode(child, parent, path, priority);
@@ -36,7 +36,6 @@ export const nodeTypesMap = new Map([
36
36
  [schema.nodes.footnotes_section, ObjectTypes.Section],
37
37
  [schema.nodes.graphical_abstract_section, ObjectTypes.Section],
38
38
  [schema.nodes.highlight_marker, ObjectTypes.HighlightMarker],
39
- [schema.nodes.inline_equation, ObjectTypes.InlineMathFragment],
40
39
  [schema.nodes.keyword, ObjectTypes.Keyword],
41
40
  [schema.nodes.keywords_element, ObjectTypes.KeywordsElement],
42
41
  [schema.nodes.keywords, ObjectTypes.Section],
@@ -35,7 +35,6 @@ export const manuscriptObjects = [
35
35
  ObjectTypes.CommentAnnotation,
36
36
  ObjectTypes.Contributor,
37
37
  ObjectTypes.Footnote,
38
- ObjectTypes.InlineMathFragment,
39
38
  ObjectTypes.Section,
40
39
  ].concat(elementObjects);
41
40
  export const isManuscriptModel = (model) => {
@@ -1,7 +1,6 @@
1
1
  export * from './lib/section-group-type';
2
2
  export * from './lib/table-cell-styles';
3
3
  export * from './lib/utils';
4
- export * from './mathjax';
5
4
  export * from './schema';
6
5
  export * from './transformer';
7
6
  export * from './jats';
@@ -32,7 +32,6 @@ export declare const jatsBodyTransformations: {
32
32
  moveFootnotes(doc: Document, group: Element, createElement: (tagName: string) => HTMLElement): void;
33
33
  moveCaptionsToEnd(body: Element): void;
34
34
  fixTables(body: Element, createElement: (tagName: string) => HTMLElement): void;
35
- moveTableFooterToEnd(body: Element): void;
36
35
  moveFloatsGroupToBody(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
37
36
  createKeywords(document: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
38
37
  };
@@ -40,7 +40,6 @@ export * from './nodes/footnotes_section';
40
40
  export * from './nodes/graphical_abstract_section';
41
41
  export * from './nodes/hard_break';
42
42
  export * from './nodes/highlight_marker';
43
- export * from './nodes/inline_equation';
44
43
  export * from './nodes/inline_footnote';
45
44
  export * from './nodes/keyword';
46
45
  export * from './nodes/keywords_element';
@@ -1,5 +1,5 @@
1
1
  /*!
2
- * © 2019 Atypon Systems LLC
2
+ * © 2023 Atypon Systems LLC
3
3
  *
4
4
  * Licensed under the Apache License, Version 2.0 (the "License");
5
5
  * you may not use this file except in compliance with the License.
@@ -17,9 +17,8 @@ import { NodeSpec } from 'prosemirror-model';
17
17
  import { ManuscriptNode } from '../types';
18
18
  interface Attrs {
19
19
  id: string;
20
- MathMLStringRepresentation: string;
21
- SVGStringRepresentation: string;
22
- TeXRepresentation: string;
20
+ format: string;
21
+ contents: string;
23
22
  }
24
23
  export interface EquationNode extends ManuscriptNode {
25
24
  attrs: Attrs;
@@ -18,8 +18,7 @@ import { ManuscriptNode } from '../types';
18
18
  import { CommentNode } from './comment';
19
19
  interface Attrs {
20
20
  id: string;
21
- suppressCaption: boolean;
22
- suppressTitle?: boolean;
21
+ label: string;
23
22
  comments?: CommentNode[];
24
23
  }
25
24
  export interface EquationElementNode extends ManuscriptNode {
@@ -15,11 +15,11 @@
15
15
  */
16
16
  import { NodeSpec } from 'prosemirror-model';
17
17
  import { ManuscriptNode } from '../types';
18
+ import { CommentNode } from './comment';
18
19
  interface Attrs {
19
- id: string;
20
- MathMLRepresentation: string;
21
- SVGRepresentation: string;
22
- TeXRepresentation: string;
20
+ contents: string;
21
+ format: string;
22
+ comments?: CommentNode[];
23
23
  }
24
24
  export interface InlineEquationNode extends ManuscriptNode {
25
25
  attrs: Attrs;
@@ -13,7 +13,7 @@
13
13
  * See the License for the specific language governing permissions and
14
14
  * limitations under the License.
15
15
  */
16
- import { Affiliation, Attribution, BibliographicDate, BibliographicName, BibliographyElement, BibliographyItem, Color, CommentAnnotation, Contribution, Contributor, ContributorRole, Corresponding, ElementsOrder, EmbeddedModel, Figure, Footnote, FootnotesOrder, InlineMathFragment, Journal, Keyword, KeywordGroup, Manuscript, ManuscriptNote, ObjectTypes, ParagraphElement, Project, Section, Supplement, Titles } from '@manuscripts/json-schema';
16
+ import { Affiliation, Attribution, BibliographicDate, BibliographicName, BibliographyElement, BibliographyItem, Color, CommentAnnotation, Contribution, Contributor, ContributorRole, Corresponding, ElementsOrder, EmbeddedModel, Figure, Footnote, FootnotesOrder, Journal, Keyword, KeywordGroup, Manuscript, ManuscriptNote, ObjectTypes, ParagraphElement, Project, Section, Supplement, Titles } from '@manuscripts/json-schema';
17
17
  import { FootnotesOrderIndexList } from './footnotes-order';
18
18
  import { CommentSelector, ManuscriptModel, ModelAttachment } from './models';
19
19
  export type Build<T> = Pick<T, Exclude<keyof T, keyof ManuscriptModel>> & {
@@ -44,7 +44,6 @@ export declare const buildAffiliation: (institution: string, priority?: number)
44
44
  export declare const buildSupplementaryMaterial: (title: string, href: string) => Build<Supplement>;
45
45
  export declare const buildComment: (target: string, contents?: string, selector?: CommentSelector, contributions?: Contribution[], annotationColor?: string) => Build<CommentAnnotation>;
46
46
  export declare const buildNote: (target: string, source: 'EMAIL' | 'EDITOR' | 'DASHBOARD', contents?: string) => Build<ManuscriptNote>;
47
- export declare const buildInlineMathFragment: (containingObject: string, TeXRepresentation: string) => Build<InlineMathFragment>;
48
47
  export declare const buildFootnote: (containingObject: string, contents: string, kind?: 'footnote' | 'endnote') => Build<Footnote>;
49
48
  export declare const buildFootnotesOrder: (footnotesList: FootnotesOrderIndexList) => Build<FootnotesOrder>;
50
49
  export declare const buildCorresp: (contents: string) => Build<Corresponding>;
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "@manuscripts/transform",
3
3
  "description": "ProseMirror transformer for Manuscripts applications",
4
- "version": "2.0.3",
4
+ "version": "2.0.4-LEAN-3092",
5
5
  "repository": "github:Atypon-OpenSource/manuscripts-transform",
6
6
  "license": "Apache-2.0",
7
7
  "main": "dist/cjs",
@@ -29,11 +29,10 @@
29
29
  "version": "yarn build"
30
30
  },
31
31
  "dependencies": {
32
- "@manuscripts/json-schema": "^2.2.2",
33
- "@manuscripts/library": "^1.3.1",
32
+ "@manuscripts/json-schema": "^2.2.2-LEAN-3092",
33
+ "@manuscripts/library": "^1.3.2",
34
34
  "debug": "^4.3.4",
35
35
  "jszip": "^3.10.1",
36
- "mathjax-full": "^3.2.2",
37
36
  "mime": "^3.0.0",
38
37
  "prosemirror-model": "^1.18.3",
39
38
  "uuid": "^9.0.0",