@manuscripts/transform 1.5.8-LEAN-3030 → 1.5.8-LEAN-3030-1

package/dist/cjs/lib/utils.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.modelsEqual = exports.groupBy = exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
+exports.modelsEqual = exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
 const bibliography_section_1 = require("../schema/nodes/bibliography_section");
 const graphical_abstract_section_1 = require("../schema/nodes/graphical_abstract_section");
 function* iterateChildren(node, recurse = false) {
@@ -61,17 +61,6 @@ const isInBibliographySection = ($pos) => {
     return false;
 };
 exports.isInBibliographySection = isInBibliographySection;
-const isAbstractsSectionNode = (node) => node.attrs.category === 'MPSectionCategory:abstracts';
-const isInAbstractsSection = ($pos) => {
-    for (let i = $pos.depth; i > 0; i--) {
-        const node = $pos.node(i);
-        if (isAbstractsSectionNode(node)) {
-            return true;
-        }
-    }
-    return false;
-};
-exports.isInAbstractsSection = isInAbstractsSection;
 const findParentNodeClosestToPos = ($pos, predicate) => {
     for (let i = $pos.depth; i > 0; i--) {
         const node = $pos.node(i);
@@ -94,15 +83,6 @@ const getTrimmedTextContent = (node, querySelector) => {
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
 exports.getTrimmedTextContent = getTrimmedTextContent;
-const groupBy = (list, getKey) => list.reduce((previous, currentItem) => {
-    const group = getKey(currentItem);
-    if (!previous[group]) {
-        previous[group] = [];
-    }
-    previous[group].push(currentItem);
-    return previous;
-}, {});
-exports.groupBy = groupBy;
 function modelsEqual(model, model2) {
     for (const v in model) {
         for (const v2 in model2) {

package/dist/cjs/schema/nodes/cross_reference.js

@@ -34,7 +34,7 @@ exports.crossReference = {
                 var _a;
                 const dom = p;
                 return {
-                    rid: ((_a = dom.getAttribute('data-reference-id')) === null || _a === void 0 ? void 0 : _a.split(/\s+/)) || [],
+                    rids: ((_a = dom.getAttribute('data-reference-id')) === null || _a === void 0 ? void 0 : _a.split(/\s+/)) || [],
                     label: dom.textContent,
                 };
             },

package/dist/cjs/transformer/decode.js

@@ -34,11 +34,10 @@ const json_schema_1 = require("@manuscripts/json-schema");
 const debug_1 = __importDefault(require("debug"));
 const prosemirror_model_1 = require("prosemirror-model");
 const errors_1 = require("../errors");
-const utils_1 = require("../lib/utils");
+const section_group_type_1 = require("../lib/section-group-type");
 const schema_1 = require("../schema");
 const builders_1 = require("./builders");
 const highlight_markers_1 = require("./highlight-markers");
-const id_1 = require("./id");
 const object_types_1 = require("./object-types");
 const section_category_1 = require("./section-category");
 const timestamp_1 = require("./timestamp");
@@ -103,45 +102,29 @@ class Decoder {
             ...this.comments.values(),
         ]);
     }
-    createRootSectionNodes() {
-        let rootSections = getSections(this.modelMap)
-            .filter((section) => !section.path || section.path.length <= 1)
-            .filter((section) => section.category !== 'MPSectionCategory:contributors' &&
-            section.category !== 'MPSectionCategory:affiliations' &&
-            section.category !== 'MPSectionCategory:keywords');
-        rootSections = this.addGeneratedLabels(rootSections);
-        const sectionGroups = (0, utils_1.groupBy)(rootSections, (sec) => {
-            var _a;
-            return (0, section_category_1.chooseCoreSectionBySection)((_a = sec.category) !== null && _a !== void 0 ? _a : '');
-        });
-        this.ensureCoreSectionsExist(sectionGroups);
-        const absSectionNode = sectionGroups['MPSectionCategory:abstracts'].map((e) => this.decode(e));
-        const bodySectionNodes = sectionGroups['MPSectionCategory:body'].map((e) => this.decode(e));
-        const backmatterSectionNodes = sectionGroups['MPSectionCategory:backmatter'].map(e => this.decode(e));
-        const abstractCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.abstracts, absSectionNode);
-        const bodyCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.body, bodySectionNodes);
-        const backmatterCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.backmatter, backmatterSectionNodes);
-        return {
-            abstracts: abstractCoreSectionNodes,
-            body: bodyCoreSectionNodes,
-            backmatter: backmatterCoreSectionNodes,
+    createContentSections() {
+        let sections = getSections(this.modelMap);
+        sections = this.addGeneratedLabels(sections);
+        const groups = {
+            abstracts: [],
+            body: [],
+            backmatter: [],
         };
-    }
-    ensureCoreSectionsExist(coreSections) {
-        if (!coreSections['MPSectionCategory:abstracts']) {
-            coreSections['MPSectionCategory:abstracts'] = [];
-        }
-        if (!coreSections['MPSectionCategory:body']) {
-            coreSections['MPSectionCategory:body'] = [];
-        }
-        if (!coreSections['MPSectionCategory:backmatter']) {
-            coreSections['MPSectionCategory:backmatter'] = [];
+        for (const section of sections) {
+            const category = section.category;
+            const group = category
+                ? (0, section_category_1.getSectionGroupType)(category)
+                : section_group_type_1.bodyType;
+            groups[group._id].push(this.decode(section));
         }
-    }
-    createAndFill(nodeType, content) {
-        return nodeType.createAndFill({
-            id: (0, id_1.generateNodeID)(nodeType),
-        }, content);
+        const abstracts = schema_1.schema.nodes.abstracts.createAndFill({}, groups[section_group_type_1.abstractsType._id]);
+        const body = schema_1.schema.nodes.body.createAndFill({}, groups[section_group_type_1.bodyType._id]);
+        const backmatter = schema_1.schema.nodes.backmatter.createAndFill({}, groups[section_group_type_1.backmatterType._id]);
+        return {
+            abstracts,
+            body,
+            backmatter,
+        };
     }
     createCommentNodes(model) {
         const comments = [];
@@ -514,7 +497,7 @@ class Decoder {
                         }
                     }
                 }
-                const elementNodes = elements.map(e => this.decode(e));
+                const elementNodes = elements.map((e) => this.decode(e));
                 const sectionTitle = 'section_title';
                 const sectionTitleNode = model.title
                     ? this.parseContents(model.title, 'h1', this.getComments(model), {
@@ -661,7 +644,7 @@ class Decoder {
             const contributors = this.createContributorsNode();
             const affiliations = this.createAffiliationsNode();
             const keywords = this.createKeywordsNode();
-            const { abstracts, body, backmatter } = this.createRootSectionNodes();
+            const { abstracts, body, backmatter } = this.createContentSections();
             const comments = this.createCommentsNode();
             const contents = [
                 title,

package/dist/cjs/transformer/labels.js

@@ -30,6 +30,7 @@ const labelProperties = new Map([
     [schema_1.schema.nodes.equation_element, 'equationElementLabel'],
     [schema_1.schema.nodes.listing_element, 'listingElementLabel'],
 ]);
+const excludedTypes = [schema_1.schema.nodes.graphical_abstract_section];
 const chooseLabel = (nodeType, manuscript) => {
     const labelProperty = labelProperties.get(nodeType);
     if (labelProperty) {
@@ -54,25 +55,10 @@ const buildTargets = (fragment, manuscript) => {
         return `${counter.label} ${counter.index}`;
     };
     const targets = new Map();
-    const figures = [];
-    fragment.forEach((node) => {
-        if (node.attrs.category === 'MPSectionCategory:abstracts') {
-            node.forEach((child) => {
-                if (child.type === node.type.schema.nodes.graphical_abstract_section) {
-                    child.forEach((item) => {
-                        if (item.type === node.type.schema.nodes.figure_element) {
-                            figures.push(item.attrs.id);
-                        }
-                    });
-                }
-            });
-        }
-    });
-    fragment.descendants((node) => {
+    fragment.descendants((node, pos, parent) => {
         var _a;
         if (node.type.name in counters) {
-            const isInGraphicalAbstract = figures.indexOf(node.attrs.id) > -1;
-            if (isInGraphicalAbstract) {
+            if (parent && excludedTypes.includes(parent.type)) {
                 return;
             }
             const label = buildLabel(node.type);

package/dist/cjs/transformer/section-category.js

@@ -15,8 +15,9 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.chooseSectionCategoryFromTitle = exports.chooseSectionCategory = exports.chooseSectionCategoryByType = exports.chooseCoreSectionBySection = exports.chooseSecType = exports.chooseJatsFnType = exports.buildSectionCategory = exports.guessSectionCategory = exports.chooseSectionLableName = exports.chooseSectionNodeType = exports.isAnySectionNode = void 0;
+exports.chooseSectionCategoryFromTitle = exports.chooseSectionCategory = exports.chooseSectionCategoryByType = exports.getSectionGroupType = exports.chooseSecType = exports.chooseJatsFnType = exports.buildSectionCategory = exports.guessSectionCategory = exports.chooseSectionLableName = exports.chooseSectionNodeType = exports.isAnySectionNode = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
+const section_group_type_1 = require("../lib/section-group-type");
 const schema_1 = require("../schema");
 const sectionNodeTypes = [
     schema_1.schema.nodes.bibliography_section,
@@ -37,10 +38,6 @@ const chooseSectionNodeType = (category) => {
             return schema_1.schema.nodes.footnotes_section;
         case 'MPSectionCategory:keywords':
             return schema_1.schema.nodes.keywords;
-        case 'MPSectionCategory:affiliations':
-            return schema_1.schema.nodes.affiliations;
-        case 'MPSectionCategory:contributors':
-            return schema_1.schema.nodes.contributors;
         case 'MPSectionCategory:toc':
             return schema_1.schema.nodes.toc_section;
         default:
@@ -87,10 +84,6 @@ const buildSectionCategory = (node) => {
             return 'MPSectionCategory:toc';
         case schema_1.schema.nodes.graphical_abstract_section:
             return 'MPSectionCategory:abstract-graphical';
-        case schema_1.schema.nodes.affiliations:
-            return 'MPSectionCategory:affiliations';
-        case schema_1.schema.nodes.contributors:
-            return 'MPSectionCategory:contributors';
         default:
             return node.attrs.category || undefined;
     }
@@ -119,33 +112,32 @@ const chooseSecType = (sectionCategory) => {
     }
 };
 exports.chooseSecType = chooseSecType;
-const chooseCoreSectionBySection = (section) => {
-    switch (section) {
+const getSectionGroupType = (category) => {
+    switch (category) {
         case 'MPSectionCategory:abstract':
-        case 'MPSectionCategory:abstract-teaser':
         case 'MPSectionCategory:abstract-graphical':
-            return 'MPSectionCategory:abstracts';
-        case 'MPSectionCategory:acknowledgement':
-        case 'MPSectionCategory:availability':
-        case 'MPSectionCategory:conclusions':
-        case 'MPSectionCategory:bibliography':
-        case 'MPSectionCategory:discussion':
-        case 'MPSectionCategory:endnotes':
-        case 'MPSectionCategory:appendices':
+            return section_group_type_1.abstractsType;
         case 'MPSectionCategory:competing-interests':
         case 'MPSectionCategory:con':
-        case 'MPSectionCategory:deceased':
         case 'MPSectionCategory:ethics-statement':
         case 'MPSectionCategory:financial-disclosure':
         case 'MPSectionCategory:supplementary-material':
         case 'MPSectionCategory:supported-by':
-        case 'MPSectionCategory:abbreviations':
-        case 'MPSectionCategory:results':
-            return 'MPSectionCategory:backmatter';
+        case 'MPSectionCategory:availability':
+        case 'MPSectionCategory:acknowledgement':
+        case 'MPSectionCategory:endnotes':
+        case 'MPSectionCategory:bibliography':
+        case 'MPSectionCategory:appendices':
+        case 'MPSectionCategory:deceased':
+        case 'MPSectionCategory:equal':
+        case 'MPSectionCategory:present-address':
+        case 'MPSectionCategory:presented-at':
+        case 'MPSectionCategory:previously-at':
+            return section_group_type_1.backmatterType;
     }
-    return 'MPSectionCategory:body';
+    return section_group_type_1.bodyType;
 };
-exports.chooseCoreSectionBySection = chooseCoreSectionBySection;
+exports.getSectionGroupType = getSectionGroupType;
 const chooseSectionCategoryByType = (secType) => {
     switch (secType) {
         case 'abstract':
@@ -205,16 +197,6 @@ const chooseSectionCategoryByType = (secType) => {
             return 'MPSectionCategory:supported-by';
         case 'ethics-statement':
             return 'MPSectionCategory:ethics-statement';
-        case 'body':
-            return 'MPSectionCategory:body';
-        case 'backmatter':
-            return 'MPSectionCategory:backmatter';
-        case 'abstracts':
-            return 'MPSectionCategory:abstracts';
-        case 'affiliations':
-            return 'MPSectionCategory:affiliations';
-        case 'contributors':
-            return 'MPSectionCategory:contributors';
         default:
             return undefined;
     }

package/dist/es/lib/utils.js

@@ -54,16 +54,6 @@ export const isInBibliographySection = ($pos) => {
     }
     return false;
 };
-const isAbstractsSectionNode = (node) => node.attrs.category === 'MPSectionCategory:abstracts';
-export const isInAbstractsSection = ($pos) => {
-    for (let i = $pos.depth; i > 0; i--) {
-        const node = $pos.node(i);
-        if (isAbstractsSectionNode(node)) {
-            return true;
-        }
-    }
-    return false;
-};
 export const findParentNodeClosestToPos = ($pos, predicate) => {
     for (let i = $pos.depth; i > 0; i--) {
         const node = $pos.node(i);
@@ -84,14 +74,6 @@ export const getTrimmedTextContent = (node, querySelector) => {
     }
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
-export const groupBy = (list, getKey) => list.reduce((previous, currentItem) => {
-    const group = getKey(currentItem);
-    if (!previous[group]) {
-        previous[group] = [];
-    }
-    previous[group].push(currentItem);
-    return previous;
-}, {});
 export function modelsEqual(model, model2) {
     for (const v in model) {
         for (const v2 in model2) {

package/dist/es/schema/nodes/cross_reference.js

@@ -31,7 +31,7 @@ export const crossReference = {
                 var _a;
                 const dom = p;
                 return {
-                    rid: ((_a = dom.getAttribute('data-reference-id')) === null || _a === void 0 ? void 0 : _a.split(/\s+/)) || [],
+                    rids: ((_a = dom.getAttribute('data-reference-id')) === null || _a === void 0 ? void 0 : _a.split(/\s+/)) || [],
                     label: dom.textContent,
                 };
             },

package/dist/es/transformer/decode.js

@@ -28,13 +28,12 @@ import { ObjectTypes, } from '@manuscripts/json-schema';
 import debug from 'debug';
 import { DOMParser } from 'prosemirror-model';
 import { MissingElement } from '../errors';
-import { groupBy } from '../lib/utils';
+import { abstractsType, backmatterType, bodyType, } from '../lib/section-group-type';
 import { schema, } from '../schema';
 import { buildTitles } from './builders';
 import { insertHighlightMarkers } from './highlight-markers';
-import { generateNodeID } from './id';
 import { ExtraObjectTypes, hasObjectType, isCommentAnnotation, isManuscript, } from './object-types';
-import { chooseCoreSectionBySection, chooseSectionLableName, chooseSectionNodeType, chooseSecType, guessSectionCategory, } from './section-category';
+import { chooseSectionLableName, chooseSectionNodeType, chooseSecType, getSectionGroupType, guessSectionCategory, } from './section-category';
 import { timestamp } from './timestamp';
 const warn = debug('manuscripts-transform');
 const parser = DOMParser.fromSchema(schema);
@@ -94,45 +93,29 @@ export class Decoder {
             ...this.comments.values(),
         ]);
     }
-    createRootSectionNodes() {
-        let rootSections = getSections(this.modelMap)
-            .filter((section) => !section.path || section.path.length <= 1)
-            .filter((section) => section.category !== 'MPSectionCategory:contributors' &&
-            section.category !== 'MPSectionCategory:affiliations' &&
-            section.category !== 'MPSectionCategory:keywords');
-        rootSections = this.addGeneratedLabels(rootSections);
-        const sectionGroups = groupBy(rootSections, (sec) => {
-            var _a;
-            return chooseCoreSectionBySection((_a = sec.category) !== null && _a !== void 0 ? _a : '');
-        });
-        this.ensureCoreSectionsExist(sectionGroups);
-        const absSectionNode = sectionGroups['MPSectionCategory:abstracts'].map((e) => this.decode(e));
-        const bodySectionNodes = sectionGroups['MPSectionCategory:body'].map((e) => this.decode(e));
-        const backmatterSectionNodes = sectionGroups['MPSectionCategory:backmatter'].map(e => this.decode(e));
-        const abstractCoreSectionNodes = this.createAndFill(schema.nodes.abstracts, absSectionNode);
-        const bodyCoreSectionNodes = this.createAndFill(schema.nodes.body, bodySectionNodes);
-        const backmatterCoreSectionNodes = this.createAndFill(schema.nodes.backmatter, backmatterSectionNodes);
-        return {
-            abstracts: abstractCoreSectionNodes,
-            body: bodyCoreSectionNodes,
-            backmatter: backmatterCoreSectionNodes,
+    createContentSections() {
+        let sections = getSections(this.modelMap);
+        sections = this.addGeneratedLabels(sections);
+        const groups = {
+            abstracts: [],
+            body: [],
+            backmatter: [],
         };
-    }
-    ensureCoreSectionsExist(coreSections) {
-        if (!coreSections['MPSectionCategory:abstracts']) {
-            coreSections['MPSectionCategory:abstracts'] = [];
-        }
-        if (!coreSections['MPSectionCategory:body']) {
-            coreSections['MPSectionCategory:body'] = [];
-        }
-        if (!coreSections['MPSectionCategory:backmatter']) {
-            coreSections['MPSectionCategory:backmatter'] = [];
+        for (const section of sections) {
+            const category = section.category;
+            const group = category
+                ? getSectionGroupType(category)
+                : bodyType;
+            groups[group._id].push(this.decode(section));
         }
-    }
-    createAndFill(nodeType, content) {
-        return nodeType.createAndFill({
-            id: generateNodeID(nodeType),
-        }, content);
+        const abstracts = schema.nodes.abstracts.createAndFill({}, groups[abstractsType._id]);
+        const body = schema.nodes.body.createAndFill({}, groups[bodyType._id]);
+        const backmatter = schema.nodes.backmatter.createAndFill({}, groups[backmatterType._id]);
+        return {
+            abstracts,
+            body,
+            backmatter,
+        };
     }
     createCommentNodes(model) {
         const comments = [];
@@ -505,7 +488,7 @@ export class Decoder {
                         }
                     }
                 }
-                const elementNodes = elements.map(e => this.decode(e));
+                const elementNodes = elements.map((e) => this.decode(e));
                 const sectionTitle = 'section_title';
                 const sectionTitleNode = model.title
                     ? this.parseContents(model.title, 'h1', this.getComments(model), {
@@ -652,7 +635,7 @@ export class Decoder {
             const contributors = this.createContributorsNode();
             const affiliations = this.createAffiliationsNode();
             const keywords = this.createKeywordsNode();
-            const { abstracts, body, backmatter } = this.createRootSectionNodes();
+            const { abstracts, body, backmatter } = this.createContentSections();
             const comments = this.createCommentsNode();
             const contents = [
                 title,

package/dist/es/transformer/labels.js

@@ -27,6 +27,7 @@ const labelProperties = new Map([
     [schema.nodes.equation_element, 'equationElementLabel'],
     [schema.nodes.listing_element, 'listingElementLabel'],
 ]);
+const excludedTypes = [schema.nodes.graphical_abstract_section];
 const chooseLabel = (nodeType, manuscript) => {
     const labelProperty = labelProperties.get(nodeType);
     if (labelProperty) {
@@ -51,25 +52,10 @@ export const buildTargets = (fragment, manuscript) => {
         return `${counter.label} ${counter.index}`;
     };
     const targets = new Map();
-    const figures = [];
-    fragment.forEach((node) => {
-        if (node.attrs.category === 'MPSectionCategory:abstracts') {
-            node.forEach((child) => {
-                if (child.type === node.type.schema.nodes.graphical_abstract_section) {
-                    child.forEach((item) => {
-                        if (item.type === node.type.schema.nodes.figure_element) {
-                            figures.push(item.attrs.id);
-                        }
-                    });
-                }
-            });
-        }
-    });
-    fragment.descendants((node) => {
+    fragment.descendants((node, pos, parent) => {
         var _a;
         if (node.type.name in counters) {
-            const isInGraphicalAbstract = figures.indexOf(node.attrs.id) > -1;
-            if (isInGraphicalAbstract) {
+            if (parent && excludedTypes.includes(parent.type)) {
                 return;
             }
             const label = buildLabel(node.type);

package/dist/es/transformer/section-category.js

@@ -14,6 +14,7 @@
  * limitations under the License.
  */
 import { ObjectTypes } from '@manuscripts/json-schema';
+import { abstractsType, backmatterType, bodyType, } from '../lib/section-group-type';
 import { schema } from '../schema';
 const sectionNodeTypes = [
     schema.nodes.bibliography_section,
@@ -33,10 +34,6 @@ export const chooseSectionNodeType = (category) => {
             return schema.nodes.footnotes_section;
         case 'MPSectionCategory:keywords':
             return schema.nodes.keywords;
-        case 'MPSectionCategory:affiliations':
-            return schema.nodes.affiliations;
-        case 'MPSectionCategory:contributors':
-            return schema.nodes.contributors;
         case 'MPSectionCategory:toc':
             return schema.nodes.toc_section;
         default:
@@ -80,10 +77,6 @@ export const buildSectionCategory = (node) => {
             return 'MPSectionCategory:toc';
         case schema.nodes.graphical_abstract_section:
             return 'MPSectionCategory:abstract-graphical';
-        case schema.nodes.affiliations:
-            return 'MPSectionCategory:affiliations';
-        case schema.nodes.contributors:
-            return 'MPSectionCategory:contributors';
         default:
             return node.attrs.category || undefined;
     }
@@ -109,31 +102,30 @@ export const chooseSecType = (sectionCategory) => {
             return suffix;
     }
 };
-export const chooseCoreSectionBySection = (section) => {
-    switch (section) {
+export const getSectionGroupType = (category) => {
+    switch (category) {
         case 'MPSectionCategory:abstract':
-        case 'MPSectionCategory:abstract-teaser':
         case 'MPSectionCategory:abstract-graphical':
-            return 'MPSectionCategory:abstracts';
-        case 'MPSectionCategory:acknowledgement':
-        case 'MPSectionCategory:availability':
-        case 'MPSectionCategory:conclusions':
-        case 'MPSectionCategory:bibliography':
-        case 'MPSectionCategory:discussion':
-        case 'MPSectionCategory:endnotes':
-        case 'MPSectionCategory:appendices':
+            return abstractsType;
         case 'MPSectionCategory:competing-interests':
         case 'MPSectionCategory:con':
-        case 'MPSectionCategory:deceased':
         case 'MPSectionCategory:ethics-statement':
         case 'MPSectionCategory:financial-disclosure':
         case 'MPSectionCategory:supplementary-material':
         case 'MPSectionCategory:supported-by':
-        case 'MPSectionCategory:abbreviations':
-        case 'MPSectionCategory:results':
-            return 'MPSectionCategory:backmatter';
+        case 'MPSectionCategory:availability':
+        case 'MPSectionCategory:acknowledgement':
+        case 'MPSectionCategory:endnotes':
+        case 'MPSectionCategory:bibliography':
+        case 'MPSectionCategory:appendices':
+        case 'MPSectionCategory:deceased':
+        case 'MPSectionCategory:equal':
+        case 'MPSectionCategory:present-address':
+        case 'MPSectionCategory:presented-at':
+        case 'MPSectionCategory:previously-at':
+            return backmatterType;
     }
-    return 'MPSectionCategory:body';
+    return bodyType;
 };
 export const chooseSectionCategoryByType = (secType) => {
     switch (secType) {
@@ -194,16 +186,6 @@ export const chooseSectionCategoryByType = (secType) => {
             return 'MPSectionCategory:supported-by';
         case 'ethics-statement':
             return 'MPSectionCategory:ethics-statement';
-        case 'body':
-            return 'MPSectionCategory:body';
-        case 'backmatter':
-            return 'MPSectionCategory:backmatter';
-        case 'abstracts':
-            return 'MPSectionCategory:abstracts';
-        case 'affiliations':
-            return 'MPSectionCategory:affiliations';
-        case 'contributors':
-            return 'MPSectionCategory:contributors';
         default:
             return undefined;
     }

package/dist/types/lib/section-group-type.d.ts

@@ -13,19 +13,11 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
+export type SectionGroupTypeID = 'abstracts' | 'body' | 'backmatter';
 export type SectionGroupType = {
-    _id: string;
-    title: string;
-};
-export declare const abstractsType: {
-    _id: string;
-    title: string;
-};
-export declare const bodyType: {
-    _id: string;
-    title: string;
-};
-export declare const backmatterType: {
-    _id: string;
+    _id: SectionGroupTypeID;
     title: string;
 };
+export declare const abstractsType: SectionGroupType;
+export declare const bodyType: SectionGroupType;
+export declare const backmatterType: SectionGroupType;

package/dist/types/lib/utils.d.ts

@@ -20,7 +20,6 @@ export declare function iterateChildren(node: ManuscriptNode, recurse?: boolean)
 export declare const findNodePositions: (state: ManuscriptEditorState, predicate: (node: ManuscriptNode) => boolean) => number[];
 export declare const isInGraphicalAbstractSection: ($pos: ResolvedPos) => boolean;
 export declare const isInBibliographySection: ($pos: ResolvedPos) => boolean;
-export declare const isInAbstractsSection: ($pos: ResolvedPos) => boolean;
 export declare const findParentNodeClosestToPos: ($pos: ResolvedPos, predicate: (node: ProsemirrorNode) => boolean) => {
     pos: number;
     start: number;
@@ -28,5 +27,4 @@ export declare const findParentNodeClosestToPos: ($pos: ResolvedPos, predicate:
     node: ProsemirrorNode;
 } | undefined;
 export declare const getTrimmedTextContent: (node: Element | Document | null, querySelector: string) => string | null | undefined;
-export declare const groupBy: <T, K extends string | number | symbol>(list: T[], getKey: (item: T) => K) => Record<K, T[]>;
 export declare function modelsEqual(model: Model, model2: Model): boolean;

package/dist/types/transformer/decode.d.ts

@@ -29,9 +29,7 @@ export declare class Decoder {
     private createContributorsNode;
     private createKeywordsNode;
     private createCommentsNode;
-    private createRootSectionNodes;
-    private ensureCoreSectionsExist;
-    private createAndFill;
+    private createContentSections;
     private createCommentNodes;
     private getComments;
     private extractListing;

package/dist/types/transformer/section-category.d.ts

@@ -14,17 +14,18 @@
  * limitations under the License.
  */
 import { Element } from '@manuscripts/json-schema';
+import { SectionGroupType } from '../lib/section-group-type';
 import { ManuscriptNode, ManuscriptNodeType } from '../schema';
 export declare const isAnySectionNode: (node: ManuscriptNode) => boolean;
-export type SectionCategory = 'MPSectionCategory:abstract' | 'MPSectionCategory:abstract-teaser' | 'MPSectionCategory:abstract-graphical' | 'MPSectionCategory:acknowledgement' | 'MPSectionCategory:availability' | 'MPSectionCategory:bibliography' | 'MPSectionCategory:conclusions' | 'MPSectionCategory:discussion' | 'MPSectionCategory:endnotes' | 'MPSectionCategory:introduction' | 'MPSectionCategory:keywords' | 'MPSectionCategory:materials-method' | 'MPSectionCategory:results' | 'MPSectionCategory:toc' | 'MPSectionCategory:floating-element' | 'MPSectionCategory:appendices' | 'MPSectionCategory:competing-interests' | 'MPSectionCategory:financial-disclosure' | 'MPSectionCategory:con' | 'MPSectionCategory:deceased' | 'MPSectionCategory:equal' | 'MPSectionCategory:present-address' | 'MPSectionCategory:presented-at' | 'MPSectionCategory:previously-at' | 'MPSectionCategory:supplementary-material' | 'MPSectionCategory:supported-by' | 'MPSectionCategory:ethics-statement' | 'MPSectionCategory:body' | 'MPSectionCategory:abstracts' | 'MPSectionCategory:backmatter' | 'MPSectionCategory:affiliations' | 'MPSectionCategory:contributors';
-export type SecType = 'abstract' | 'abstract-teaser' | 'abstract-graphical' | 'acknowledgments' | 'availability' | 'bibliography' | 'conclusions' | 'data-availability' | 'discussion' | 'endnotes' | 'intro' | 'keywords' | 'materials' | 'methods' | 'results' | 'toc' | 'floating-element' | 'appendices' | 'competing-interests' | 'financial-disclosure' | 'con' | 'deceased' | 'equal' | 'present-address' | 'presented-at' | 'previously-at' | 'supplementary-material' | 'supported-by' | 'ethics-statement' | 'abstracts' | 'body' | 'backmatter' | 'affiliations' | 'contributors';
+export type SectionCategory = 'MPSectionCategory:abstract' | 'MPSectionCategory:abstract-teaser' | 'MPSectionCategory:abstract-graphical' | 'MPSectionCategory:acknowledgement' | 'MPSectionCategory:availability' | 'MPSectionCategory:bibliography' | 'MPSectionCategory:conclusions' | 'MPSectionCategory:discussion' | 'MPSectionCategory:endnotes' | 'MPSectionCategory:introduction' | 'MPSectionCategory:keywords' | 'MPSectionCategory:materials-method' | 'MPSectionCategory:results' | 'MPSectionCategory:toc' | 'MPSectionCategory:floating-element' | 'MPSectionCategory:appendices' | 'MPSectionCategory:competing-interests' | 'MPSectionCategory:financial-disclosure' | 'MPSectionCategory:con' | 'MPSectionCategory:deceased' | 'MPSectionCategory:equal' | 'MPSectionCategory:present-address' | 'MPSectionCategory:presented-at' | 'MPSectionCategory:previously-at' | 'MPSectionCategory:supplementary-material' | 'MPSectionCategory:supported-by' | 'MPSectionCategory:ethics-statement';
+export type SecType = 'abstract' | 'abstract-teaser' | 'abstract-graphical' | 'acknowledgments' | 'availability' | 'bibliography' | 'conclusions' | 'data-availability' | 'discussion' | 'endnotes' | 'intro' | 'keywords' | 'materials' | 'methods' | 'results' | 'toc' | 'floating-element' | 'appendices' | 'competing-interests' | 'financial-disclosure' | 'con' | 'deceased' | 'equal' | 'present-address' | 'presented-at' | 'previously-at' | 'supplementary-material' | 'supported-by' | 'ethics-statement';
 export declare const chooseSectionNodeType: (category?: SectionCategory) => ManuscriptNodeType;
 export declare const chooseSectionLableName: (type?: SecType) => string;
 export declare const guessSectionCategory: (elements: Element[]) => SectionCategory | undefined;
 export declare const buildSectionCategory: (node: ManuscriptNode) => SectionCategory | undefined;
 export declare const chooseJatsFnType: (footnoteType: string) => string;
 export declare const chooseSecType: (sectionCategory: SectionCategory) => SecType;
-export declare const chooseCoreSectionBySection: (section: string) => string;
+export declare const getSectionGroupType: (category: string) => SectionGroupType;
 export declare const chooseSectionCategoryByType: (secType: string) => SectionCategory | undefined;
 export declare const chooseSectionCategory: (section: HTMLElement) => SectionCategory | undefined;
 export declare const chooseSectionCategoryFromTitle: (title: string | null) => SectionCategory | undefined;

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "1.5.8-LEAN-3030",
+  "version": "1.5.8-LEAN-3030-1",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",