@manuscripts/transform 1.5.4-LEAN-3030 → 1.5.4-LEAN-2995

package/dist/cjs/jats/importer/jats-body-dom-parser.js

@@ -507,7 +507,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="affiliations"]',
-        node: 'affiliations',
+        node: 'affiliations_section',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -519,7 +519,7 @@ const nodes = [
     {
         tag: 'aff',
         node: 'affiliation',
-        context: 'affiliations/',
+        context: 'affiliations_section/',
         getAttrs: (node) => {
             const element = node;
             const aff = {
@@ -566,7 +566,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="contributors"]',
-        node: 'contributors',
+        node: 'contributors_section',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -578,7 +578,7 @@ const nodes = [
     {
         tag: 'contrib',
         node: 'contributor',
-        context: 'contributors/',
+        context: 'contributors_section/',
         getAttrs: (node) => {
             const element = node;
             const contrib = {
@@ -633,19 +633,19 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="keywords"]',
-        node: 'keywords',
-    },
-    {
-        tag: 'sec[sec-type="abstracts"]',
-        node: 'abstracts',
-    },
-    {
-        tag: 'sec[sec-type="body"]',
-        node: 'body',
+        node: 'keywords_section',
+        getAttrs: (node) => {
+            const element = node;
+            return {
+                id: element.getAttribute('id'),
+                category: (0, transformer_1.chooseSectionCategory)(element),
+            };
+        },
     },
     {
-        tag: 'sec[sec-type="backmatter"]',
-        node: 'backmatter',
+        tag: 'kwd-group-list',
+        context: 'keywords_section/',
+        node: 'keywords_element',
     },
     {
         tag: 'sec',
@@ -658,15 +658,10 @@ const nodes = [
             };
         },
     },
-    {
-        tag: 'kwd-group-list',
-        context: 'keywords/',
-        node: 'keywords_element',
-    },
     {
         tag: 'kwd-group',
         context: 'keywords_element/',
-        node: 'keyword_group',
+        node: 'keywords_group',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -676,7 +671,7 @@ const nodes = [
     },
     {
         tag: 'kwd',
-        context: 'keyword_group//',
+        context: 'keywords_group//',
         node: 'keyword',
     },
     {
@@ -731,7 +726,7 @@ const nodes = [
     {
         tag: 'title',
         node: 'section_title',
-        context: 'section/|footnotes_section/|bibliography_section/|keywords/',
+        context: 'section/|footnotes_section/|bibliography_section/|keywords_section/',
     },
     {
         tag: 'title',

package/dist/cjs/jats/importer/jats-body-transformations.js

@@ -380,9 +380,9 @@ exports.jatsBodyTransformations = {
             const title = createElement('title');
             title.textContent = 'Keywords';
             section.append(title);
-            const keywordsElement = createElement('kwd-group-list');
-            keywordsElement.append(keywordGroups[0]);
-            section.append(keywordsElement);
+            const kwdGroupsEl = createElement('kwd-group-list');
+            kwdGroupsEl.append(keywordGroups[0]);
+            section.append(kwdGroupsEl);
             body.prepend(section);
         }
     },

package/dist/cjs/jats/jats-exporter.js

@@ -431,11 +431,9 @@ class JATSExporter {
             }
         };
         this.buildBody = (fragment) => {
+            const content = this.serializeFragment(fragment);
             const body = this.document.createElement('body');
-            fragment.forEach((cFragment) => {
-                const serializedNode = this.serializeNode(cFragment);
-                body.append(...serializedNode.childNodes);
-            });
+            body.appendChild(content);
             this.fixBody(body, fragment);
             return body;
         };
@@ -602,8 +600,8 @@ class JATSExporter {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
                 title: () => '',
-                affiliations: () => '',
-                contributors: () => '',
+                affiliations_section: () => '',
+                contributors_section: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],
                 contributor: () => '',
                 affiliation: () => '',
@@ -612,10 +610,7 @@ class JATSExporter {
                 bibliography_element: () => '',
                 bibliography_item: () => '',
                 comment_list: () => '',
-                keyword_group: () => '',
-                body: () => ['body', 0],
-                abstracts: () => ['abstract', 0],
-                backmatter: () => ['backmatter', 0],
+                keywords_group: () => '',
                 bibliography_section: (node) => [
                     'ref-list',
                     { id: normalizeID(node.attrs.id) },
@@ -794,7 +789,7 @@ class JATSExporter {
                 },
                 keyword: () => '',
                 keywords_element: () => '',
-                keywords: () => '',
+                keywords_section: () => '',
                 link: (node) => {
                     const text = node.textContent;
                     if (!text) {

package/dist/cjs/lib/utils.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.groupBy = exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
+exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
 const bibliography_section_1 = require("../schema/nodes/bibliography_section");
 const graphical_abstract_section_1 = require("../schema/nodes/graphical_abstract_section");
 function* iterateChildren(node, recurse = false) {
@@ -94,12 +94,3 @@ const getTrimmedTextContent = (node, querySelector) => {
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
 exports.getTrimmedTextContent = getTrimmedTextContent;
-const groupBy = (list, getKey) => list.reduce((previous, currentItem) => {
-    const group = getKey(currentItem);
-    if (!previous[group]) {
-        previous[group] = [];
-    }
-    previous[group].push(currentItem);
-    return previous;
-}, {});
-exports.groupBy = groupBy;

package/dist/cjs/schema/index.js

@@ -33,7 +33,7 @@ exports.schema = void 0;
 const prosemirror_model_1 = require("prosemirror-model");
 const marks_1 = require("./marks");
 const affiliation_1 = require("./nodes/affiliation");
-const affiliations_1 = require("./nodes/affiliations");
+const affiliations_section_1 = require("./nodes/affiliations_section");
 const attribution_1 = require("./nodes/attribution");
 const bibliography_element_1 = require("./nodes/bibliography_element");
 const bibliography_item_1 = require("./nodes/bibliography_item");
@@ -45,8 +45,7 @@ const citation_1 = require("./nodes/citation");
 const comment_1 = require("./nodes/comment");
 const comment_list_1 = require("./nodes/comment_list");
 const contributor_1 = require("./nodes/contributor");
-const contributors_1 = require("./nodes/contributors");
-const core_section_1 = require("./nodes/core_section");
+const contributors_section_1 = require("./nodes/contributors_section");
 const cross_reference_1 = require("./nodes/cross_reference");
 const doc_1 = require("./nodes/doc");
 const equation_1 = require("./nodes/equation");
@@ -63,8 +62,9 @@ const highlight_marker_1 = require("./nodes/highlight_marker");
 const inline_equation_1 = require("./nodes/inline_equation");
 const inline_footnote_1 = require("./nodes/inline_footnote");
 const keyword_1 = require("./nodes/keyword");
-const keyword_group_1 = require("./nodes/keyword_group");
-const keywords_1 = require("./nodes/keywords");
+const keywords_element_1 = require("./nodes/keywords_element");
+const keywords_group_1 = require("./nodes/keywords_group");
+const keywords_section_1 = require("./nodes/keywords_section");
 const link_1 = require("./nodes/link");
 const list_1 = require("./nodes/list");
 const listing_1 = require("./nodes/listing");
@@ -88,7 +88,6 @@ const text_1 = require("./nodes/text");
 const title_1 = require("./nodes/title");
 const toc_element_1 = require("./nodes/toc_element");
 const toc_section_1 = require("./nodes/toc_section");
-const keywords_element_1 = require("./nodes/keywords_element");
 __exportStar(require("./groups"), exports);
 __exportStar(require("./types"), exports);
 __exportStar(require("./nodes/comment"), exports);
@@ -118,7 +117,7 @@ __exportStar(require("./nodes/inline_equation"), exports);
 __exportStar(require("./nodes/inline_footnote"), exports);
 __exportStar(require("./nodes/keyword"), exports);
 __exportStar(require("./nodes/keywords_element"), exports);
-__exportStar(require("./nodes/keywords"), exports);
+__exportStar(require("./nodes/keywords_section"), exports);
 __exportStar(require("./nodes/link"), exports);
 __exportStar(require("./nodes/list"), exports);
 __exportStar(require("./nodes/listing"), exports);
@@ -143,8 +142,8 @@ __exportStar(require("./nodes/meta_section"), exports);
 __exportStar(require("./nodes/contributor"), exports);
 __exportStar(require("./nodes/table_element_footer"), exports);
 __exportStar(require("./nodes/title"), exports);
-__exportStar(require("./nodes/affiliations"), exports);
-__exportStar(require("./nodes/contributors"), exports);
+__exportStar(require("./nodes/affiliations_section"), exports);
+__exportStar(require("./nodes/contributors_section"), exports);
 exports.schema = new prosemirror_model_1.Schema({
     marks: {
         bold: marks_1.bold,
@@ -171,9 +170,6 @@ exports.schema = new prosemirror_model_1.Schema({
         caption: caption_1.caption,
         caption_title: caption_title_1.captionTitle,
         citation: citation_1.citation,
-        abstracts: core_section_1.coreSection,
-        body: core_section_1.coreSection,
-        backmatter: core_section_1.coreSection,
         cross_reference: cross_reference_1.crossReference,
         doc: doc_1.doc,
         equation: equation_1.equation,
@@ -191,8 +187,8 @@ exports.schema = new prosemirror_model_1.Schema({
         inline_footnote: inline_footnote_1.inlineFootnote,
         keyword: keyword_1.keyword,
         keywords_element: keywords_element_1.keywordsElement,
-        keywords: keywords_1.keywords,
-        keyword_group: keyword_group_1.keywordGroup,
+        keywords_section: keywords_section_1.keywordsSection,
+        keywords_group: keywords_group_1.keywordsGroup,
         link: link_1.link,
         list_item: list_1.listItem,
         listing: listing_1.listing,
@@ -223,7 +219,7 @@ exports.schema = new prosemirror_model_1.Schema({
         contributor: contributor_1.contributor,
         table_element_footer: table_element_footer_1.tableElementFooter,
         title: title_1.title,
-        affiliations: affiliations_1.affiliations,
-        contributors: contributors_1.contributors,
+        affiliations_section: affiliations_section_1.affiliationsSection,
+        contributors_section: contributors_section_1.contributorsSection,
     },
 });

package/dist/cjs/schema/nodes/affiliations_section.js

@@ -0,0 +1,15 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.isAffiliationsSectionNode = exports.affiliationsSection = void 0;
+exports.affiliationsSection = {
+    content: 'section_title? affiliation*',
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+    },
+    group: 'block sections',
+    selectable: false,
+    toDOM: () => ['section', 0],
+};
+const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations_section;
+exports.isAffiliationsSectionNode = isAffiliationsSectionNode;

package/dist/cjs/schema/nodes/contributors_section.js

@@ -0,0 +1,15 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.isContributorsSectionNode = exports.contributorsSection = void 0;
+exports.contributorsSection = {
+    content: 'section_title? contributor*',
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+    },
+    group: 'block sections',
+    selectable: false,
+    toDOM: () => ['section', 0],
+};
+const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors_section;
+exports.isContributorsSectionNode = isContributorsSectionNode;

package/dist/cjs/schema/nodes/keyword.js

@@ -21,6 +21,7 @@ exports.keyword = {
     content: 'inline*',
     attrs: {
         id: { default: '' },
+        contents: { default: '' },
         dataTracked: { default: null },
         comments: { default: null },
     },

package/dist/cjs/schema/nodes/keywords_element.js

@@ -18,7 +18,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.keywordsElement = void 0;
 exports.keywordsElement = {
     atom: true,
-    content: 'keyword_group*',
+    content: 'keywords_group*',
     attrs: {
         id: { default: '' },
         contents: { default: '' },

package/dist/cjs/schema/nodes/{keyword_group.js → keywords_group.js}

@@ -15,8 +15,8 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isKeywordGroupNode = exports.keywordGroup = void 0;
-exports.keywordGroup = {
+exports.isKeywordsGroupNode = exports.keywordsGroup = void 0;
+exports.keywordsGroup = {
     content: 'keyword*',
     attrs: {
         id: { default: '' },
@@ -31,11 +31,11 @@ exports.keywordGroup = {
         },
     ],
     toDOM: (node) => {
-        const keywordGroupNode = node;
+        const keywordsGroupNode = node;
         return [
             'div',
             {
-                id: keywordGroupNode.attrs.id,
+                id: keywordsGroupNode.attrs.id,
                 class: 'keywords',
                 spellcheck: 'false',
                 contenteditable: false,
@@ -44,5 +44,5 @@ exports.keywordGroup = {
         ];
     },
 };
-const isKeywordGroupNode = (node) => node.type === node.type.schema.nodes.keywords_group;
-exports.isKeywordGroupNode = isKeywordGroupNode;
+const isKeywordsGroupNode = (node) => node.type === node.type.schema.nodes.keywords_group;
+exports.isKeywordsGroupNode = isKeywordsGroupNode;

package/dist/cjs/schema/nodes/{keywords.js → keywords_section.js}

@@ -15,14 +15,14 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isKeywordsNode = exports.keywords = void 0;
-exports.keywords = {
+exports.isKeywordsSectionNode = exports.keywordsSection = void 0;
+exports.keywordsSection = {
     content: 'section_title (keywords_element | placeholder_element)',
     attrs: {
         id: { default: '' },
         dataTracked: { default: null },
     },
-    group: 'block',
+    group: 'block sections',
     selectable: false,
     parseDOM: [
         {
@@ -30,11 +30,11 @@ exports.keywords = {
         },
     ],
     toDOM: (node) => {
-        const keywords = node;
+        const keywordsSectionNode = node;
         return [
             'div',
             {
-                id: keywords.attrs.id,
+                id: keywordsSectionNode.attrs.id,
                 class: 'keywords',
                 spellcheck: 'false',
                 contenteditable: false,
@@ -43,5 +43,5 @@ exports.keywords = {
         ];
     },
 };
-const isKeywordsNode = (node) => node.type === node.type.schema.nodes.keywords;
-exports.isKeywordsNode = isKeywordsNode;
+const isKeywordsSectionNode = (node) => node.type === node.type.schema.nodes.keywords_section;
+exports.isKeywordsSectionNode = isKeywordsSectionNode;

package/dist/cjs/schema/nodes/manuscript.js

@@ -17,7 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.manuscript = void 0;
 exports.manuscript = {
-    content: 'title? contributors? affiliations? keywords? abstracts body backmatter meta_section',
+    content: 'title* (section | sections)+ meta_section',
     attrs: {
         id: { default: '' },
     },