@manuscripts/transform 1.5.3 → 1.5.4-LEAN-3030

package/dist/es/transformer/decode.js

@@ -28,11 +28,13 @@ import { ObjectTypes, } from '@manuscripts/json-schema';
 import debug from 'debug';
 import { DOMParser } from 'prosemirror-model';
 import { MissingElement } from '../errors';
+import { groupBy } from '../lib/utils';
 import { schema, } from '../schema';
+import { buildTitles } from './builders';
 import { insertHighlightMarkers } from './highlight-markers';
 import { generateNodeID } from './id';
 import { ExtraObjectTypes, hasObjectType, isCommentAnnotation, isManuscript, } from './object-types';
-import { chooseSectionLableName, chooseSectionNodeType, chooseSecType, guessSectionCategory, } from './section-category';
+import { chooseCoreSectionBySection, chooseSectionLableName, chooseSectionNodeType, chooseSecType, guessSectionCategory, } from './section-category';
 import { timestamp } from './timestamp';
 const warn = debug('manuscripts-transform');
 const parser = DOMParser.fromSchema(schema);
@@ -53,17 +55,41 @@ export const sortSectionsByPriority = (a, b) => a.priority === b.priority ? 0 :
 const getSections = (modelMap) => getModelsByType(modelMap, ObjectTypes.Section).sort(sortSectionsByPriority);
 const getAffiliations = (modelMap) => getModelsByType(modelMap, ObjectTypes.Affiliation);
 const getContributors = (modelMap) => getModelsByType(modelMap, ObjectTypes.Contributor);
+const getKeywordElements = (modelMap) => getModelsByType(modelMap, ObjectTypes.KeywordsElement);
+const getKeywordGroups = (modelMap) => getModelsByType(modelMap, ObjectTypes.KeywordGroup);
+const getKeywords = (modelMap) => getModelsByType(modelMap, ObjectTypes.Keyword);
+const getTitles = (modelMap) => getModelsByType(modelMap, ObjectTypes.Titles)[0];
 export const isManuscriptNode = (model) => model !== null;
-const isParagraphElement = hasObjectType(ObjectTypes.ParagraphElement);
 const isFootnote = hasObjectType(ObjectTypes.Footnote);
-const isKeyword = hasObjectType(ObjectTypes.Keyword);
-const isKeywordsSection = (model) => model.category === 'MPSectionCategory:keywords';
-const isAffiliationsSection = (model) => model.category === 'MPSectionCategory:affiliations';
-const isContributorsSection = (model) => model.category === 'MPSectionCategory:contributors';
 const hasParentSection = (id) => (section) => section.path &&
     section.path.length > 1 &&
     section.path[section.path.length - 2] === id;
 export class Decoder {
+    createTitleNode() {
+        const titles = getTitles(this.modelMap) || buildTitles();
+        return this.decode(titles);
+    }
+    createAffiliationsNode() {
+        const affiliations = getAffiliations(this.modelMap)
+            .map((a) => this.decode(a))
+            .filter(Boolean);
+        return schema.nodes.affiliations.createAndFill({}, affiliations);
+    }
+    createContributorsNode() {
+        const contributors = getContributors(this.modelMap)
+            .map((c) => this.decode(c))
+            .filter(Boolean);
+        return schema.nodes.contributors.createAndFill({}, contributors);
+    }
+    createKeywordsNode() {
+        const elements = getKeywordElements(this.modelMap)
+            .map((e) => this.decode(e))
+            .filter(Boolean);
+        return schema.nodes.keywords.createAndFill({}, [
+            schema.nodes.section_title.create({}, schema.text('Keywords')),
+            ...elements,
+        ]);
+    }
     createMetaSectionNode() {
         const commentListNode = this.createCommentListNode();
         return schema.nodes.meta_section.createAndFill({}, [
@@ -75,49 +101,51 @@ export class Decoder {
             ...this.comments.values(),
         ]);
     }
-    handleMissingRootSectionNodes(rootSectionNodes) {
-        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations_section')) {
-            this.createAffiliationSectionNode(rootSectionNodes);
-        }
-        if (!rootSectionNodes.find((node) => node.type.name === 'contributors_section')) {
-            this.createContributorSectionNode(rootSectionNodes);
-        }
-    }
-    createAffiliationSectionNode(rootSectionNodes) {
-        const affiliationNodes = getAffiliations(this.modelMap)
-            .map((affiliation) => this.decode(affiliation))
-            .filter(Boolean);
-        if (affiliationNodes.length) {
-            const node = schema.nodes.affiliations_section.createAndFill({
-                id: generateNodeID(schema.nodes.section),
-            }, affiliationNodes);
-            rootSectionNodes.unshift(node);
-        }
-    }
-    createContributorSectionNode(rootSectionNodes) {
-        const contributorNodes = getContributors(this.modelMap)
-            .map((contributor) => this.decode(contributor))
-            .filter(Boolean);
-        if (contributorNodes.length) {
-            const node = schema.nodes.contributors_section.createAndFill({
-                id: generateNodeID(schema.nodes.section),
-            }, contributorNodes);
-            rootSectionNodes.unshift(node);
-        }
-    }
     createRootSectionNodes() {
-        let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
+        let rootSections = getSections(this.modelMap)
+            .filter((section) => !section.path || section.path.length <= 1)
+            .filter((section) => section.category !== 'MPSectionCategory:contributors' &&
+            section.category !== 'MPSectionCategory:affiliations' &&
+            section.category !== 'MPSectionCategory:keywords');
         rootSections = this.addGeneratedLabels(rootSections);
-        const rootSectionNodes = rootSections
+        const sectionGroups = groupBy(rootSections, (sec) => {
+            var _a;
+            return chooseCoreSectionBySection((_a = sec.category) !== null && _a !== void 0 ? _a : '');
+        });
+        this.ensureCoreSectionsExist(sectionGroups);
+        const absSectionNode = sectionGroups['MPSectionCategory:abstracts']
             .map(this.decode)
             .filter(isManuscriptNode);
-        this.handleMissingRootSectionNodes(rootSectionNodes);
-        if (!rootSectionNodes.length) {
-            rootSectionNodes.push(schema.nodes.section.createAndFill({
-                id: generateNodeID(schema.nodes.section),
-            }));
+        const bodySectionNodes = sectionGroups['MPSectionCategory:body']
+            .map(this.decode)
+            .filter(isManuscriptNode);
+        const backmatterSectionNodes = sectionGroups['MPSectionCategory:backmatter']
+            .map(this.decode)
+            .filter(isManuscriptNode);
+        const abstractCoreSectionNodes = this.createAndFill(schema.nodes.abstracts, absSectionNode);
+        const bodyCoreSectionNodes = this.createAndFill(schema.nodes.body, bodySectionNodes);
+        const backmatterCoreSectionNodes = this.createAndFill(schema.nodes.backmatter, backmatterSectionNodes);
+        return {
+            abstracts: abstractCoreSectionNodes,
+            body: bodyCoreSectionNodes,
+            backmatter: backmatterCoreSectionNodes,
+        };
+    }
+    ensureCoreSectionsExist(coreSections) {
+        if (!coreSections['MPSectionCategory:abstracts']) {
+            coreSections['MPSectionCategory:abstracts'] = [];
         }
-        return rootSectionNodes;
+        if (!coreSections['MPSectionCategory:body']) {
+            coreSections['MPSectionCategory:body'] = [];
+        }
+        if (!coreSections['MPSectionCategory:backmatter']) {
+            coreSections['MPSectionCategory:backmatter'] = [];
+        }
+    }
+    createAndFill(nodeType, content) {
+        return nodeType.createAndFill({
+            id: generateNodeID(nodeType),
+        }, content);
     }
     createCommentsNode(model) {
         const comments = [];
@@ -137,6 +165,14 @@ export class Decoder {
     constructor(modelMap, allowMissingElements = false) {
         this.comments = new Map();
         this.creators = {
+            [ObjectTypes.Titles]: (data) => {
+                const model = data;
+                return this.parseContents(model.title, 'div', undefined, {
+                    topNode: schema.nodes.title.create({
+                        id: model._id,
+                    }),
+                });
+            },
             [ObjectTypes.BibliographyElement]: (data) => {
                 var _a;
                 const model = data;
@@ -315,19 +351,32 @@ export class Decoder {
             },
             [ObjectTypes.KeywordsElement]: (data) => {
                 const model = data;
-                const keywordGroups = this.getKeywordGroups();
+                const keywordGroups = getKeywordGroups(this.modelMap).map(k => this.decode(k));
                 return schema.nodes.keywords_element.create({
                     id: model._id,
                     paragraphStyle: model.paragraphStyle,
                 }, keywordGroups);
             },
+            [ObjectTypes.KeywordGroup]: (data) => {
+                const keywordGroup = data;
+                const keywords = getKeywords(this.modelMap).filter(k => k.containedGroup === keywordGroup._id).map(k => this.decode(k));
+                const comments = this.createCommentsNode(keywordGroup);
+                comments.forEach((c) => this.comments.set(c.attrs.id, c));
+                return schema.nodes.keyword_group.create({
+                    id: keywordGroup._id,
+                    type: keywordGroup.type,
+                    comments: comments.map((c) => c.attrs.id),
+                }, keywords);
+            },
             [ObjectTypes.Keyword]: (data) => {
-                const model = data;
+                const keyword = data;
+                const comments = this.createCommentsNode(keyword);
+                comments.forEach((c) => this.comments.set(c.attrs.id, c));
                 return schema.nodes.keyword.create({
-                    id: model._id,
-                    contents: model.name,
-                    comments: this.createCommentsNode(model),
-                }, schema.text(model.name));
+                    id: keyword._id,
+                    contents: keyword.name,
+                    comments: comments.map((c) => c.attrs.id),
+                }, schema.text(keyword.name));
             },
             [ObjectTypes.ListElement]: (data) => {
                 const model = data;
@@ -449,9 +498,6 @@ export class Decoder {
                     for (const id of model.elementIDs) {
                         const element = this.getModel(id);
                         if (element) {
-                            if (isKeywordsSection(model) && isParagraphElement(element)) {
-                                continue;
-                            }
                             elements.push(element);
                         }
                         else if (this.allowMissingElements) {
@@ -492,17 +538,11 @@ export class Decoder {
                 const sectionNodeType = chooseSectionNodeType(sectionCategory);
                 const commentNodes = this.createCommentsNode(model);
                 commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
-                let content;
-                if (isAffiliationsSection(model) || isContributorsSection(model)) {
-                    content = elementNodes.concat(nestedSections);
-                }
-                else {
-                    content = (sectionLabelNode
-                        ? [sectionLabelNode, sectionTitleNode]
-                        : [sectionTitleNode])
-                        .concat(elementNodes)
-                        .concat(nestedSections);
-                }
+                const content = (sectionLabelNode
+                    ? [sectionLabelNode, sectionTitleNode]
+                    : [sectionTitleNode])
+                    .concat(elementNodes)
+                    .concat(nestedSections);
                 const sectionNode = sectionNodeType.createAndFill({
                     id: model._id,
                     category: sectionCategory,
@@ -621,9 +661,22 @@ export class Decoder {
         };
         this.getModel = (id) => this.modelMap.get(id);
         this.createArticleNode = (manuscriptID) => {
-            const rootSectionNodes = this.createRootSectionNodes();
-            const metaSectionNode = this.createMetaSectionNode();
-            const contents = [...rootSectionNodes, metaSectionNode];
+            const title = this.createTitleNode();
+            const contributors = this.createContributorsNode();
+            const affiliations = this.createAffiliationsNode();
+            const keywords = this.createKeywordsNode();
+            const { abstracts, body, backmatter } = this.createRootSectionNodes();
+            const meta = this.createMetaSectionNode();
+            const contents = [
+                title,
+                contributors,
+                affiliations,
+                keywords,
+                abstracts,
+                body,
+                backmatter,
+                meta,
+            ];
             return schema.nodes.manuscript.create({
                 id: manuscriptID || this.getManuscriptID(),
             }, contents);
@@ -664,23 +717,6 @@ export class Decoder {
             }
             return parser.parse(template.content.firstElementChild, options);
         };
-        this.getKeywords = (id) => {
-            const keywordsOfKind = [];
-            const keywordsByGroup = [...this.modelMap.values()].filter((m) => m.objectType === ObjectTypes.Keyword &&
-                m.containedGroup === id);
-            for (const model of keywordsByGroup) {
-                if (isKeyword(model)) {
-                    const keyword = this.parseContents(model.name || '', 'div', this.getComments(model), {
-                        topNode: schema.nodes.keyword.create({
-                            id: model._id,
-                            contents: model.name,
-                        }),
-                    });
-                    keywordsOfKind.push(keyword);
-                }
-            }
-            return keywordsOfKind;
-        };
         this.getManuscriptID = () => {
             for (const item of this.modelMap.values()) {
                 if (isManuscript(item)) {
@@ -765,26 +801,4 @@ export class Decoder {
         }
         return listing;
     }
-    getKeywordGroups() {
-        const kwdGroupNodes = [];
-        const kwdGroupsModels = [
-            ...this.modelMap.values(),
-        ].filter((model) => model.objectType === ObjectTypes.KeywordGroup);
-        if (kwdGroupsModels.length > 0) {
-            for (const kwdGroupModel of kwdGroupsModels) {
-                const keywords = this.getKeywords(kwdGroupModel._id);
-                const commentNodes = this.createCommentsNode(kwdGroupModel);
-                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
-                const contents = [];
-                contents.push(...keywords);
-                const kwdGroupNode = schema.nodes.keywords_group.create({
-                    id: kwdGroupModel._id,
-                    type: kwdGroupModel.type,
-                    comments: commentNodes.map((c) => c.attrs.id),
-                }, contents);
-                kwdGroupNodes.push(kwdGroupNode);
-            }
-        }
-        return kwdGroupNodes;
-    }
 }

package/dist/es/transformer/encode.js

@@ -255,6 +255,12 @@ function figureElementEncoder(node) {
     };
 }
 const encoders = {
+    title: (node) => ({
+        title: inlineContents(node),
+        subtitle: node.attrs.subtitle,
+        runningTitle: node.attrs.runningTitle,
+        _id: node.attrs._id,
+    }),
     bibliography_element: (node) => ({
         elementType: 'div',
         contents: '',
@@ -414,34 +420,9 @@ const encoders = {
         elementType: 'div',
         paragraphStyle: node.attrs.paragraphStyle || undefined,
     }),
-    keywords_group: (node) => ({
+    keyword_group: (node) => ({
         type: node.attrs.type,
     }),
-    keywords_section: (node, parent, path, priority) => ({
-        category: buildSectionCategory(node),
-        priority: priority.value++,
-        title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title),
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
-    affiliations_section: (node, parent, path, priority) => ({
-        category: buildSectionCategory(node),
-        priority: priority.value++,
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
-    contributors_section: (node, parent, path, priority) => ({
-        category: buildSectionCategory(node),
-        priority: priority.value++,
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
     missing_figure: (node) => ({
         position: node.attrs.position || undefined,
     }),
@@ -561,6 +542,14 @@ export const modelFromNode = (node, parent, path, priority) => {
     }
     return { model, commentAnnotationsMap };
 };
+function isCoreSection(child) {
+    return (child.type === schema.nodes.abstracts ||
+        child.type === schema.nodes.body ||
+        child.type === schema.nodes.backmatter ||
+        child.type === schema.nodes.affiliations ||
+        child.type === schema.nodes.contributors ||
+        child.type === schema.nodes.keywords);
+}
 export const encode = (node) => {
     const models = new Map();
     const priority = {
@@ -568,6 +557,10 @@ export const encode = (node) => {
     };
     const placeholders = ['placeholder', 'placeholder_element'];
     const addModel = (path, parent) => (child) => {
+        if (isCoreSection(child)) {
+            child.forEach(addModel([], child));
+            return;
+        }
         if (!child.attrs.id) {
             return;
         }

package/dist/es/transformer/html.js

@@ -23,7 +23,7 @@ import { generateAttachmentFilename } from './filename';
 import { buildTargets } from './labels';
 import { isNodeType } from './node-types';
 import { hasObjectType } from './object-types';
-import { findJournal, findManuscript } from './project-bundle';
+import { findJournal, findManuscript, findTitles } from './project-bundle';
 import { chooseSecType } from './section-category';
 const chooseNodeName = (element) => {
     const nodeName = element.nodeName.toLowerCase();
@@ -146,6 +146,7 @@ export class HTMLTransformer {
         this.buildFront = () => {
             const manuscript = findManuscript(this.modelMap);
             const journal = findJournal(this.modelMap);
+            const titles = findTitles(this.modelMap);
             if (!manuscript) {
                 throw new Error('Manuscript not found in project modelMap');
             }
@@ -164,14 +165,14 @@ export class HTMLTransformer {
             }
             const articleMeta = this.document.createElement('div');
             front.appendChild(articleMeta);
-            const articleTitle = this.document.createElement('h1');
-            if (manuscript.title) {
-                articleTitle.innerHTML = manuscript.title;
+            const title = this.document.createElement('h1');
+            if (titles.title) {
+                title.innerHTML = titles.title;
             }
             if (journal === null || journal === void 0 ? void 0 : journal.title) {
-                articleTitle.setAttribute('data-journal', journal.title);
+                title.setAttribute('data-journal', journal.title);
             }
-            articleMeta.appendChild(articleTitle);
+            articleMeta.appendChild(title);
             if (manuscript.DOI) {
                 const articleID = this.document.createElement('article-id');
                 articleID.setAttribute('pub-id-type', 'doi');

package/dist/es/transformer/node-names.js

@@ -35,6 +35,6 @@ export const nodeNames = new Map([
     [schema.nodes.table_element, 'Table'],
     [schema.nodes.blockquote_element, 'Block Quote'],
     [schema.nodes.pullquote_element, 'Pull Quote'],
-    [schema.nodes.keywords_section, 'Section'],
+    [schema.nodes.keywords, 'Section'],
     [schema.nodes.toc_section, 'Section'],
 ]);

package/dist/es/transformer/node-title.js

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 import { iterateChildren } from '../lib/utils';
-import { isHighlightMarkerNode } from '../schema';
+import { isHighlightMarkerNode, schema } from '../schema';
 import { nodeNames } from './node-names';
 const textSnippet = (node, max = 100) => {
     let text = '';
@@ -29,7 +29,7 @@ const textSnippet = (node, max = 100) => {
             text += ' ';
         }
     });
-    return text.substr(0, max);
+    return text.substring(0, max);
 };
 const snippetOfNodeType = (node, nodeType) => {
     for (const child of iterateChildren(node, true)) {
@@ -40,12 +40,14 @@ const snippetOfNodeType = (node, nodeType) => {
     return null;
 };
 export const nodeTitle = (node) => {
-    const nodes = node.type.schema.nodes;
+    const nodes = schema.nodes;
     switch (node.type) {
+        case nodes.manuscript:
+            return snippetOfNodeType(node, nodes.title);
         case nodes.section:
         case nodes.bibliography_section:
         case nodes.footnotes_section:
-        case nodes.keywords_section:
+        case nodes.keywords:
         case nodes.toc_section:
         case nodes.graphical_abstract_section:
             return snippetOfNodeType(node, nodes.section_title);
@@ -68,9 +70,9 @@ export const nodeTitle = (node) => {
     }
 };
 export const nodeTitlePlaceholder = (nodeType) => {
-    const nodes = nodeType.schema.nodes;
+    const nodes = schema.nodes;
     switch (nodeType) {
-        case nodes.title:
+        case nodes.manuscript:
             return 'Untitled Manuscript';
         case nodes.section:
             return 'Untitled Section';

package/dist/es/transformer/node-types.js

@@ -16,6 +16,9 @@
 import { ObjectTypes } from '@manuscripts/json-schema';
 import { GROUP_ELEMENT, GROUP_EXECUTABLE, GROUP_SECTION, hasGroup, schema, } from '../schema';
 export const nodeTypesMap = new Map([
+    [schema.nodes.abstracts, ObjectTypes.Section],
+    [schema.nodes.body, ObjectTypes.Section],
+    [schema.nodes.backmatter, ObjectTypes.Section],
     [schema.nodes.comment, ObjectTypes.CommentAnnotation],
     [schema.nodes.bibliography_item, ObjectTypes.BibliographyItem],
     [schema.nodes.bibliography_element, ObjectTypes.BibliographyElement],
@@ -37,8 +40,8 @@ export const nodeTypesMap = new Map([
     [schema.nodes.inline_equation, ObjectTypes.InlineMathFragment],
     [schema.nodes.keyword, ObjectTypes.Keyword],
     [schema.nodes.keywords_element, ObjectTypes.KeywordsElement],
-    [schema.nodes.keywords_section, ObjectTypes.Section],
-    [schema.nodes.keywords_group, ObjectTypes.KeywordGroup],
+    [schema.nodes.keywords, ObjectTypes.Section],
+    [schema.nodes.keyword_group, ObjectTypes.KeywordGroup],
     [schema.nodes.listing, ObjectTypes.Listing],
     [schema.nodes.listing_element, ObjectTypes.ListingElement],
     [schema.nodes.manuscript, ObjectTypes.Manuscript],
@@ -54,8 +57,9 @@ export const nodeTypesMap = new Map([
     [schema.nodes.affiliation, ObjectTypes.Affiliation],
     [schema.nodes.contributor, ObjectTypes.Contributor],
     [schema.nodes.table_element_footer, ObjectTypes.TableElementFooter],
-    [schema.nodes.contributors_section, ObjectTypes.Section],
-    [schema.nodes.affiliations_section, ObjectTypes.Section],
+    [schema.nodes.contributors, ObjectTypes.Section],
+    [schema.nodes.affiliations, ObjectTypes.Section],
+    [schema.nodes.title, ObjectTypes.Titles],
 ]);
 export const isExecutableNodeType = (type) => hasGroup(type, GROUP_EXECUTABLE);
 export const isElementNodeType = (type) => hasGroup(type, GROUP_ELEMENT);

package/dist/es/transformer/project-bundle.js

@@ -63,3 +63,23 @@ export const findManuscriptById = (modelMap, manuscriptID) => {
     }
     throw new Error(`There is no manuscript found for the following _id (${manuscriptID})`);
 };
+const isTitle = hasObjectType(ObjectTypes.Titles);
+export const findTitles = (modelMap) => {
+    for (const model of modelMap.values()) {
+        if (isTitle(model)) {
+            return model;
+        }
+    }
+    const defaultTitle = {
+        _id: 'MPTitles:8EB79C14-9F61-483A-902F-A0B8EF5973C1',
+        createdAt: 1538472121.690101,
+        updatedAt: 1538472121.690101,
+        objectType: 'MPTitles',
+        title: 'main title',
+        subtitle: 'subtitle',
+        runningTitle: 'running title',
+        manuscriptID: 'MPManuscript:E3830344-E77B-42BA-BD77-3E95489712A0',
+        containerID: 'MPProject:1',
+    };
+    return defaultTitle;
+};

package/dist/es/transformer/section-category.js

@@ -19,7 +19,7 @@ import { schema } from '../schema';
 const sectionNodeTypes = [
     schema.nodes.bibliography_section,
     schema.nodes.footnotes_section,
-    schema.nodes.keywords_section,
+    schema.nodes.keywords,
     schema.nodes.section,
     schema.nodes.toc_section,
 ];
@@ -40,11 +40,11 @@ export const chooseSectionNodeType = (category) => {
         case 'MPSectionCategory:endnotes':
             return schema.nodes.footnotes_section;
         case 'MPSectionCategory:keywords':
-            return schema.nodes.keywords_section;
+            return schema.nodes.keywords;
         case 'MPSectionCategory:affiliations':
-            return schema.nodes.affiliations_section;
+            return schema.nodes.affiliations;
         case 'MPSectionCategory:contributors':
-            return schema.nodes.contributors_section;
+            return schema.nodes.contributors;
         case 'MPSectionCategory:toc':
             return schema.nodes.toc_section;
         default:
@@ -82,15 +82,15 @@ export const buildSectionCategory = (node) => {
             return 'MPSectionCategory:bibliography';
         case schema.nodes.footnotes_section:
             return 'MPSectionCategory:endnotes';
-        case schema.nodes.keywords_section:
+        case schema.nodes.keywords:
             return 'MPSectionCategory:keywords';
         case schema.nodes.toc_section:
             return 'MPSectionCategory:toc';
         case schema.nodes.graphical_abstract_section:
             return 'MPSectionCategory:abstract-graphical';
-        case schema.nodes.affiliations_section:
+        case schema.nodes.affiliations:
             return 'MPSectionCategory:affiliations';
-        case schema.nodes.contributors_section:
+        case schema.nodes.contributors:
             return 'MPSectionCategory:contributors';
         default:
             return node.attrs.category || undefined;
@@ -117,6 +117,32 @@ export const chooseSecType = (sectionCategory) => {
             return suffix;
     }
 };
+export const chooseCoreSectionBySection = (section) => {
+    switch (section) {
+        case 'MPSectionCategory:abstract':
+        case 'MPSectionCategory:abstract-teaser':
+        case 'MPSectionCategory:abstract-graphical':
+            return 'MPSectionCategory:abstracts';
+        case 'MPSectionCategory:acknowledgement':
+        case 'MPSectionCategory:availability':
+        case 'MPSectionCategory:conclusions':
+        case 'MPSectionCategory:bibliography':
+        case 'MPSectionCategory:discussion':
+        case 'MPSectionCategory:endnotes':
+        case 'MPSectionCategory:appendices':
+        case 'MPSectionCategory:competing-interests':
+        case 'MPSectionCategory:con':
+        case 'MPSectionCategory:deceased':
+        case 'MPSectionCategory:ethics-statement':
+        case 'MPSectionCategory:financial-disclosure':
+        case 'MPSectionCategory:supplementary-material':
+        case 'MPSectionCategory:supported-by':
+        case 'MPSectionCategory:abbreviations':
+        case 'MPSectionCategory:results':
+            return 'MPSectionCategory:backmatter';
+    }
+    return 'MPSectionCategory:body';
+};
 export const chooseSectionCategoryByType = (secType) => {
     switch (secType) {
         case 'abstract':

package/dist/types/lib/utils.d.ts

@@ -27,3 +27,4 @@ export declare const findParentNodeClosestToPos: ($pos: ResolvedPos, predicate:
     node: ProsemirrorNode;
 } | undefined;
 export declare const getTrimmedTextContent: (node: Element | Document, querySelector: string) => string | null | undefined;
+export declare const groupBy: <T, K extends string | number | symbol>(list: T[], getKey: (item: T) => K) => Record<K, T[]>;

package/dist/types/schema/index.d.ts

@@ -44,7 +44,7 @@ export * from './nodes/inline_equation';
 export * from './nodes/inline_footnote';
 export * from './nodes/keyword';
 export * from './nodes/keywords_element';
-export * from './nodes/keywords_section';
+export * from './nodes/keywords';
 export * from './nodes/link';
 export * from './nodes/list';
 export * from './nodes/listing';
@@ -68,6 +68,7 @@ export * from './nodes/affiliation';
 export * from './nodes/meta_section';
 export * from './nodes/contributor';
 export * from './nodes/table_element_footer';
-export * from './nodes/affiliations_section';
-export * from './nodes/contributors_section';
+export * from './nodes/title';
+export * from './nodes/affiliations';
+export * from './nodes/contributors';
 export declare const schema: Schema<Nodes, Marks>;

package/dist/types/schema/nodes/affiliations.d.ts

@@ -0,0 +1,11 @@
+import { NodeSpec } from 'prosemirror-model';
+import { ManuscriptNode } from '../types';
+interface Attrs {
+    id: string;
+}
+export interface AffiliationsNode extends ManuscriptNode {
+    attrs: Attrs;
+}
+export declare const affiliations: NodeSpec;
+export declare const isAffiliationsNode: (node: ManuscriptNode) => node is AffiliationsNode;
+export {};

package/dist/types/schema/nodes/contributors.d.ts

@@ -0,0 +1,11 @@
+import { NodeSpec } from 'prosemirror-model';
+import { ManuscriptNode } from '../types';
+interface Attrs {
+    id: string;
+}
+export interface ContributorsNode extends ManuscriptNode {
+    attrs: Attrs;
+}
+export declare const contributors: NodeSpec;
+export declare const isContributorsNode: (node: ManuscriptNode) => node is ContributorsNode;
+export {};