@manuscripts/transform 1.5.2-LEAN-3047 → 1.5.2-LEAN-3032

package/dist/cjs/jats/importer/jats-body-dom-parser.js

@@ -507,7 +507,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="affiliations"]',
-        node: 'affiliations_section',
+        node: 'affiliations',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -519,7 +519,7 @@ const nodes = [
     {
         tag: 'aff',
         node: 'affiliation',
-        context: 'affiliations_section/',
+        context: 'affiliations/',
         getAttrs: (node) => {
             const element = node;
             const aff = {
@@ -566,7 +566,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="contributors"]',
-        node: 'contributors_section',
+        node: 'contributors',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -578,7 +578,7 @@ const nodes = [
     {
         tag: 'contrib',
         node: 'contributor',
-        context: 'contributors_section/',
+        context: 'contributors/',
         getAttrs: (node) => {
             const element = node;
             const contrib = {
@@ -633,7 +633,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="keywords"]',
-        node: 'keywords_section',
+        node: 'keywords',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -644,9 +644,21 @@ const nodes = [
     },
     {
         tag: 'kwd-group-list',
-        context: 'keywords_section/',
+        context: 'keywords/',
         node: 'keywords_element',
     },
+    {
+        tag: 'sec[sec-type="abstracts"]',
+        node: 'abstracts',
+    },
+    {
+        tag: 'sec[sec-type="body"]',
+        node: 'body',
+    },
+    {
+        tag: 'sec[sec-type="backmatter"]',
+        node: 'backmatter',
+    },
     {
         tag: 'sec',
         node: 'section',
@@ -726,7 +738,7 @@ const nodes = [
     {
         tag: 'title',
         node: 'section_title',
-        context: 'section/|footnotes_section/|bibliography_section/|keywords_section/',
+        context: 'section/|footnotes_section/|bibliography_section/|keywords/',
     },
     {
         tag: 'title',

package/dist/cjs/jats/jats-exporter.js

@@ -430,9 +430,11 @@ class JATSExporter {
             }
         };
         this.buildBody = (fragment) => {
-            const content = this.serializeFragment(fragment);
             const body = this.document.createElement('body');
-            body.appendChild(content);
+            fragment.forEach((cFragment) => {
+                const serializedNode = this.serializeNode(cFragment);
+                body.append(...serializedNode.childNodes);
+            });
             this.fixBody(body, fragment);
             return body;
         };
@@ -598,8 +600,8 @@ class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
-                affiliations_section: () => '',
-                contributors_section: () => '',
+                affiliations: () => '',
+                contributors: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],
                 contributor: () => '',
                 affiliation: () => '',
@@ -609,6 +611,9 @@ class JATSExporter {
                 bibliography_item: () => '',
                 comment_list: () => '',
                 keywords_group: () => '',
+                body: () => ['body', 0],
+                abstracts: () => ['abstract', 0],
+                backmatter: () => ['backmatter', 0],
                 bibliography_section: (node) => [
                     'ref-list',
                     { id: normalizeID(node.attrs.id) },
@@ -787,7 +792,7 @@ class JATSExporter {
                 },
                 keyword: () => '',
                 keywords_element: () => '',
-                keywords_section: () => '',
+                keywords: () => '',
                 link: (node) => {
                     const text = node.textContent;
                     if (!text) {

package/dist/cjs/lib/utils.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
+exports.groupBy = exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
 const bibliography_section_1 = require("../schema/nodes/bibliography_section");
 const graphical_abstract_section_1 = require("../schema/nodes/graphical_abstract_section");
 function* iterateChildren(node, recurse = false) {
@@ -94,3 +94,12 @@ const getTrimmedTextContent = (node, querySelector) => {
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
 exports.getTrimmedTextContent = getTrimmedTextContent;
+const groupBy = (list, getKey) => list.reduce((previous, currentItem) => {
+    const group = getKey(currentItem);
+    if (!previous[group]) {
+        previous[group] = [];
+    }
+    previous[group].push(currentItem);
+    return previous;
+}, {});
+exports.groupBy = groupBy;

package/dist/cjs/schema/index.js

@@ -46,6 +46,7 @@ const comment_1 = require("./nodes/comment");
 const comment_list_1 = require("./nodes/comment_list");
 const contributor_1 = require("./nodes/contributor");
 const contributors_section_1 = require("./nodes/contributors_section");
+const core_section_1 = require("./nodes/core_section");
 const cross_reference_1 = require("./nodes/cross_reference");
 const doc_1 = require("./nodes/doc");
 const equation_1 = require("./nodes/equation");
@@ -168,6 +169,9 @@ exports.schema = new prosemirror_model_1.Schema({
         caption: caption_1.caption,
         caption_title: caption_title_1.captionTitle,
         citation: citation_1.citation,
+        abstracts: core_section_1.coreSection,
+        body: core_section_1.coreSection,
+        backmatter: core_section_1.coreSection,
         cross_reference: cross_reference_1.crossReference,
         doc: doc_1.doc,
         equation: equation_1.equation,
@@ -185,7 +189,7 @@ exports.schema = new prosemirror_model_1.Schema({
         inline_footnote: inline_footnote_1.inlineFootnote,
         keyword: keyword_1.keyword,
         keywords_element: keywords_element_1.keywordsElement,
-        keywords_section: keywords_section_1.keywordsSection,
+        keywords: keywords_section_1.keywordsSection,
         keywords_group: keywords_group_1.keywordsGroup,
         link: link_1.link,
         list_item: list_1.listItem,
@@ -216,7 +220,7 @@ exports.schema = new prosemirror_model_1.Schema({
         meta_section: meta_section_1.metaSection,
         contributor: contributor_1.contributor,
         table_element_footer: table_element_footer_1.tableElementFooter,
-        affiliations_section: affiliations_section_1.affiliationsSection,
-        contributors_section: contributors_section_1.contributorsSection,
+        affiliations: affiliations_section_1.affiliationsSection,
+        contributors: contributors_section_1.contributorsSection,
     },
 });

package/dist/cjs/schema/nodes/affiliations_section.js

@@ -11,5 +11,5 @@ exports.affiliationsSection = {
     selectable: false,
     toDOM: () => ['section', 0],
 };
-const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations_section;
+const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations;
 exports.isAffiliationsSectionNode = isAffiliationsSectionNode;

package/dist/cjs/schema/nodes/contributors_section.js

@@ -11,5 +11,5 @@ exports.contributorsSection = {
     selectable: false,
     toDOM: () => ['section', 0],
 };
-const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors_section;
+const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors;
 exports.isContributorsSectionNode = isContributorsSectionNode;

package/dist/cjs/schema/nodes/core_section.js

@@ -0,0 +1,27 @@
+"use strict";
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.coreSection = void 0;
+exports.coreSection = {
+    content: '(section | sections)*',
+    atom: true,
+    attrs: {
+        id: { default: '' },
+    },
+    group: 'block sections',
+    toDOM: () => ['section', 0],
+};

package/dist/cjs/schema/nodes/graphical_abstract_section.js

@@ -21,7 +21,6 @@ exports.graphicalAbstractSection = {
     attrs: {
         id: { default: '' },
         category: { default: '' },
-        dataTracked: { default: null },
     },
     group: 'block sections',
     selectable: false,

package/dist/cjs/schema/nodes/keywords_section.js

@@ -43,5 +43,5 @@ exports.keywordsSection = {
         ];
     },
 };
-const isKeywordsSectionNode = (node) => node.type === node.type.schema.nodes.keywords_section;
+const isKeywordsSectionNode = (node) => node.type === node.type.schema.nodes.keywords;
 exports.isKeywordsSectionNode = isKeywordsSectionNode;

package/dist/cjs/schema/nodes/manuscript.js

@@ -17,7 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.manuscript = void 0;
 exports.manuscript = {
-    content: '(section | sections)+ meta_section',
+    content: 'contributors? affiliations? keywords? abstracts body backmatter meta_section',
     attrs: {
         id: { default: '' },
     },

package/dist/cjs/transformer/decode.js

@@ -34,6 +34,7 @@ const json_schema_1 = require("@manuscripts/json-schema");
 const debug_1 = __importDefault(require("debug"));
 const prosemirror_model_1 = require("prosemirror-model");
 const errors_1 = require("../errors");
+const utils_1 = require("../lib/utils");
 const schema_1 = require("../schema");
 const highlight_markers_1 = require("./highlight-markers");
 const id_1 = require("./id");
@@ -62,6 +63,7 @@ exports.sortSectionsByPriority = sortSectionsByPriority;
 const getSections = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Section).sort(exports.sortSectionsByPriority);
 const getAffiliations = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Affiliation);
 const getContributors = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Contributor);
+const getKeywordElements = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.KeywordsElement);
 const isManuscriptNode = (model) => model !== null;
 exports.isManuscriptNode = isManuscriptNode;
 const isParagraphElement = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.ParagraphElement);
@@ -86,10 +88,13 @@ class Decoder {
         ]);
     }
     handleMissingRootSectionNodes(rootSectionNodes) {
-        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations_section')) {
+        if (!rootSectionNodes.find((node) => node.type.name === 'keywords')) {
+            this.createKeywordsSectionNode(rootSectionNodes);
+        }
+        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations')) {
             this.createAffiliationSectionNode(rootSectionNodes);
         }
-        if (!rootSectionNodes.find((node) => node.type.name === 'contributors_section')) {
+        if (!rootSectionNodes.find((node) => node.type.name === 'contributors')) {
             this.createContributorSectionNode(rootSectionNodes);
         }
     }
@@ -97,37 +102,79 @@ class Decoder {
         const affiliationNodes = getAffiliations(this.modelMap)
             .map((affiliation) => this.decode(affiliation))
             .filter(Boolean);
-        if (affiliationNodes.length) {
-            const node = schema_1.schema.nodes.affiliations_section.createAndFill({
-                id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
-            }, affiliationNodes);
-            rootSectionNodes.unshift(node);
-        }
+        const node = schema_1.schema.nodes.affiliations.createAndFill({
+            id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
+        }, affiliationNodes);
+        rootSectionNodes.unshift(node);
     }
     createContributorSectionNode(rootSectionNodes) {
         const contributorNodes = getContributors(this.modelMap)
             .map((contributor) => this.decode(contributor))
             .filter(Boolean);
-        if (contributorNodes.length) {
-            const node = schema_1.schema.nodes.contributors_section.createAndFill({
+        const node = schema_1.schema.nodes.contributors.createAndFill({
+            id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
+        }, contributorNodes);
+        rootSectionNodes.unshift(node);
+    }
+    createKeywordsSectionNode(rootSectionNodes) {
+        const keywordElementNodes = getKeywordElements(this.modelMap)
+            .map((keywordEl) => this.decode(keywordEl))
+            .filter(Boolean);
+        if (keywordElementNodes) {
+            const node = schema_1.schema.nodes.keywords.createAndFill({
                 id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
-            }, contributorNodes);
+            }, [
+                schema_1.schema.nodes.section_title.create({}, schema_1.schema.text('Keywords')),
+                ...keywordElementNodes,
+            ]);
             rootSectionNodes.unshift(node);
         }
     }
     createRootSectionNodes() {
-        let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
+        let rootSections = getSections(this.modelMap)
+            .filter((section) => !section.path || section.path.length <= 1)
+            .filter((section) => section.category !== 'MPSectionCategory:contributors' &&
+            section.category !== 'MPSectionCategory:affiliations' &&
+            section.category !== 'MPSectionCategory:keywords');
         rootSections = this.addGeneratedLabels(rootSections);
-        const rootSectionNodes = rootSections
+        const sectionGroups = (0, utils_1.groupBy)(rootSections, (sec) => {
+            var _a;
+            return (0, section_category_1.chooseCoreSectionBySection)((_a = sec.category) !== null && _a !== void 0 ? _a : '');
+        });
+        this.ensureCoreSectionsExist(sectionGroups);
+        const absSectionNode = sectionGroups['MPSectionCategory:abstracts']
             .map(this.decode)
             .filter(exports.isManuscriptNode);
-        this.handleMissingRootSectionNodes(rootSectionNodes);
-        if (!rootSectionNodes.length) {
-            rootSectionNodes.push(schema_1.schema.nodes.section.createAndFill({
-                id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
-            }));
+        const bodySectionNodes = sectionGroups['MPSectionCategory:body']
+            .map(this.decode)
+            .filter(exports.isManuscriptNode);
+        const backmatterSectionNodes = sectionGroups['MPSectionCategory:backmatter']
+            .map(this.decode)
+            .filter(exports.isManuscriptNode);
+        const abstractCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.abstracts, absSectionNode);
+        const bodyCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.body, bodySectionNodes);
+        const backmatterCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.backmatter, backmatterSectionNodes);
+        return [
+            abstractCoreSectionNodes,
+            bodyCoreSectionNodes,
+            backmatterCoreSectionNodes,
+        ];
+    }
+    ensureCoreSectionsExist(coreSections) {
+        if (!coreSections['MPSectionCategory:abstracts']) {
+            coreSections['MPSectionCategory:abstracts'] = [];
         }
-        return rootSectionNodes;
+        if (!coreSections['MPSectionCategory:body']) {
+            coreSections['MPSectionCategory:body'] = [];
+        }
+        if (!coreSections['MPSectionCategory:backmatter']) {
+            coreSections['MPSectionCategory:backmatter'] = [];
+        }
+    }
+    createAndFill(nodeType, content) {
+        return nodeType.createAndFill({
+            id: (0, id_1.generateNodeID)(nodeType),
+        }, content);
     }
     createCommentsNode(model) {
         const comments = [];
@@ -632,6 +679,7 @@ class Decoder {
         this.getModel = (id) => this.modelMap.get(id);
         this.createArticleNode = (manuscriptID) => {
             const rootSectionNodes = this.createRootSectionNodes();
+            this.handleMissingRootSectionNodes(rootSectionNodes);
             const metaSectionNode = this.createMetaSectionNode();
             const contents = [...rootSectionNodes, metaSectionNode];
             return schema_1.schema.nodes.manuscript.create({

package/dist/cjs/transformer/encode.js

@@ -425,31 +425,6 @@ const encoders = {
     keywords_group: (node) => ({
         type: node.attrs.type,
     }),
-    keywords_section: (node, parent, path, priority) => ({
-        category: (0, section_category_1.buildSectionCategory)(node),
-        priority: priority.value++,
-        title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title),
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
-    affiliations_section: (node, parent, path, priority) => ({
-        category: (0, section_category_1.buildSectionCategory)(node),
-        priority: priority.value++,
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
-    contributors_section: (node, parent, path, priority) => ({
-        category: (0, section_category_1.buildSectionCategory)(node),
-        priority: priority.value++,
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
     missing_figure: (node) => ({
         position: node.attrs.position || undefined,
     }),
@@ -570,6 +545,14 @@ const modelFromNode = (node, parent, path, priority) => {
     return { model, commentAnnotationsMap };
 };
 exports.modelFromNode = modelFromNode;
+function isCoreSection(child) {
+    return (child.type === schema_1.schema.nodes.abstracts ||
+        child.type === schema_1.schema.nodes.body ||
+        child.type === schema_1.schema.nodes.backmatter ||
+        child.type === schema_1.schema.nodes.affiliations ||
+        child.type === schema_1.schema.nodes.contributors ||
+        child.type === schema_1.schema.nodes.keywords);
+}
 const encode = (node) => {
     const models = new Map();
     const priority = {
@@ -577,6 +560,10 @@ const encode = (node) => {
     };
     const placeholders = ['placeholder', 'placeholder_element'];
     const addModel = (path, parent) => (child) => {
+        if (isCoreSection(child)) {
+            child.forEach(addModel([], child));
+            return;
+        }
         if (!child.attrs.id) {
             return;
         }

package/dist/cjs/transformer/node-names.js

@@ -38,6 +38,6 @@ exports.nodeNames = new Map([
     [schema_1.schema.nodes.table_element, 'Table'],
     [schema_1.schema.nodes.blockquote_element, 'Block Quote'],
     [schema_1.schema.nodes.pullquote_element, 'Pull Quote'],
-    [schema_1.schema.nodes.keywords_section, 'Section'],
+    [schema_1.schema.nodes.keywords, 'Section'],
     [schema_1.schema.nodes.toc_section, 'Section'],
 ]);

package/dist/cjs/transformer/node-title.js

@@ -48,7 +48,7 @@ const nodeTitle = (node) => {
         case nodes.section:
         case nodes.bibliography_section:
         case nodes.footnotes_section:
-        case nodes.keywords_section:
+        case nodes.keywords:
         case nodes.toc_section:
         case nodes.graphical_abstract_section:
             return snippetOfNodeType(node, nodes.section_title);

package/dist/cjs/transformer/node-types.js

@@ -19,6 +19,9 @@ exports.isNodeType = exports.isSectionNodeType = exports.isElementNodeType = exp
 const json_schema_1 = require("@manuscripts/json-schema");
 const schema_1 = require("../schema");
 exports.nodeTypesMap = new Map([
+    [schema_1.schema.nodes.abstracts, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.body, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.backmatter, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.comment, json_schema_1.ObjectTypes.CommentAnnotation],
     [schema_1.schema.nodes.bibliography_item, json_schema_1.ObjectTypes.BibliographyItem],
     [schema_1.schema.nodes.bibliography_element, json_schema_1.ObjectTypes.BibliographyElement],
@@ -40,7 +43,7 @@ exports.nodeTypesMap = new Map([
     [schema_1.schema.nodes.inline_equation, json_schema_1.ObjectTypes.InlineMathFragment],
     [schema_1.schema.nodes.keyword, json_schema_1.ObjectTypes.Keyword],
     [schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
-    [schema_1.schema.nodes.keywords_section, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.keywords, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.keywords_group, json_schema_1.ObjectTypes.KeywordGroup],
     [schema_1.schema.nodes.listing, json_schema_1.ObjectTypes.Listing],
     [schema_1.schema.nodes.listing_element, json_schema_1.ObjectTypes.ListingElement],
@@ -57,8 +60,8 @@ exports.nodeTypesMap = new Map([
     [schema_1.schema.nodes.affiliation, json_schema_1.ObjectTypes.Affiliation],
     [schema_1.schema.nodes.contributor, json_schema_1.ObjectTypes.Contributor],
     [schema_1.schema.nodes.table_element_footer, json_schema_1.ObjectTypes.TableElementFooter],
-    [schema_1.schema.nodes.contributors_section, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.affiliations_section, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.contributors, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.affiliations, json_schema_1.ObjectTypes.Section],
 ]);
 const isExecutableNodeType = (type) => (0, schema_1.hasGroup)(type, schema_1.GROUP_EXECUTABLE);
 exports.isExecutableNodeType = isExecutableNodeType;

package/dist/cjs/transformer/section-category.js

@@ -15,14 +15,14 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.chooseSectionCategoryFromTitle = exports.chooseSectionCategory = exports.chooseSectionCategoryByType = exports.chooseSecType = exports.chooseJatsFnType = exports.buildSectionCategory = exports.guessSectionCategory = exports.chooseSectionLableName = exports.chooseSectionNodeType = exports.isAnySectionNode = exports.getCoreSectionTitles = void 0;
+exports.chooseSectionCategoryFromTitle = exports.chooseSectionCategory = exports.chooseSectionCategoryByType = exports.chooseCoreSectionBySection = exports.chooseSecType = exports.chooseJatsFnType = exports.buildSectionCategory = exports.guessSectionCategory = exports.chooseSectionLableName = exports.chooseSectionNodeType = exports.isAnySectionNode = exports.getCoreSectionTitles = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const core_section_categories_1 = require("../lib/core-section-categories");
 const schema_1 = require("../schema");
 const sectionNodeTypes = [
     schema_1.schema.nodes.bibliography_section,
     schema_1.schema.nodes.footnotes_section,
-    schema_1.schema.nodes.keywords_section,
+    schema_1.schema.nodes.keywords,
     schema_1.schema.nodes.section,
     schema_1.schema.nodes.toc_section,
 ];
@@ -45,11 +45,11 @@ const chooseSectionNodeType = (category) => {
         case 'MPSectionCategory:endnotes':
             return schema_1.schema.nodes.footnotes_section;
         case 'MPSectionCategory:keywords':
-            return schema_1.schema.nodes.keywords_section;
+            return schema_1.schema.nodes.keywords;
         case 'MPSectionCategory:affiliations':
-            return schema_1.schema.nodes.affiliations_section;
+            return schema_1.schema.nodes.affiliations;
         case 'MPSectionCategory:contributors':
-            return schema_1.schema.nodes.contributors_section;
+            return schema_1.schema.nodes.contributors;
         case 'MPSectionCategory:toc':
             return schema_1.schema.nodes.toc_section;
         default:
@@ -90,15 +90,15 @@ const buildSectionCategory = (node) => {
             return 'MPSectionCategory:bibliography';
         case schema_1.schema.nodes.footnotes_section:
             return 'MPSectionCategory:endnotes';
-        case schema_1.schema.nodes.keywords_section:
+        case schema_1.schema.nodes.keywords:
             return 'MPSectionCategory:keywords';
         case schema_1.schema.nodes.toc_section:
             return 'MPSectionCategory:toc';
         case schema_1.schema.nodes.graphical_abstract_section:
             return 'MPSectionCategory:abstract-graphical';
-        case schema_1.schema.nodes.affiliations_section:
+        case schema_1.schema.nodes.affiliations:
             return 'MPSectionCategory:affiliations';
-        case schema_1.schema.nodes.contributors_section:
+        case schema_1.schema.nodes.contributors:
             return 'MPSectionCategory:contributors';
         default:
             return node.attrs.category || undefined;
@@ -128,6 +128,33 @@ const chooseSecType = (sectionCategory) => {
     }
 };
 exports.chooseSecType = chooseSecType;
+const chooseCoreSectionBySection = (section) => {
+    switch (section) {
+        case 'MPSectionCategory:abstract':
+        case 'MPSectionCategory:abstract-teaser':
+        case 'MPSectionCategory:abstract-graphical':
+            return 'MPSectionCategory:abstracts';
+        case 'MPSectionCategory:acknowledgement':
+        case 'MPSectionCategory:availability':
+        case 'MPSectionCategory:conclusions':
+        case 'MPSectionCategory:bibliography':
+        case 'MPSectionCategory:discussion':
+        case 'MPSectionCategory:endnotes':
+        case 'MPSectionCategory:appendices':
+        case 'MPSectionCategory:competing-interests':
+        case 'MPSectionCategory:con':
+        case 'MPSectionCategory:deceased':
+        case 'MPSectionCategory:ethics-statement':
+        case 'MPSectionCategory:financial-disclosure':
+        case 'MPSectionCategory:supplementary-material':
+        case 'MPSectionCategory:supported-by':
+        case 'MPSectionCategory:abbreviations':
+        case 'MPSectionCategory:results':
+            return 'MPSectionCategory:backmatter';
+    }
+    return 'MPSectionCategory:body';
+};
+exports.chooseCoreSectionBySection = chooseCoreSectionBySection;
 const chooseSectionCategoryByType = (secType) => {
     switch (secType) {
         case 'abstract':

package/dist/es/jats/importer/jats-body-dom-parser.js

@@ -501,7 +501,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="affiliations"]',
-        node: 'affiliations_section',
+        node: 'affiliations',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -513,7 +513,7 @@ const nodes = [
     {
         tag: 'aff',
         node: 'affiliation',
-        context: 'affiliations_section/',
+        context: 'affiliations/',
         getAttrs: (node) => {
             const element = node;
             const aff = {
@@ -560,7 +560,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="contributors"]',
-        node: 'contributors_section',
+        node: 'contributors',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -572,7 +572,7 @@ const nodes = [
     {
         tag: 'contrib',
         node: 'contributor',
-        context: 'contributors_section/',
+        context: 'contributors/',
         getAttrs: (node) => {
             const element = node;
             const contrib = {
@@ -627,7 +627,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="keywords"]',
-        node: 'keywords_section',
+        node: 'keywords',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -638,9 +638,21 @@ const nodes = [
     },
     {
         tag: 'kwd-group-list',
-        context: 'keywords_section/',
+        context: 'keywords/',
         node: 'keywords_element',
     },
+    {
+        tag: 'sec[sec-type="abstracts"]',
+        node: 'abstracts',
+    },
+    {
+        tag: 'sec[sec-type="body"]',
+        node: 'body',
+    },
+    {
+        tag: 'sec[sec-type="backmatter"]',
+        node: 'backmatter',
+    },
     {
         tag: 'sec',
         node: 'section',
@@ -720,7 +732,7 @@ const nodes = [
     {
         tag: 'title',
         node: 'section_title',
-        context: 'section/|footnotes_section/|bibliography_section/|keywords_section/',
+        context: 'section/|footnotes_section/|bibliography_section/|keywords/',
     },
     {
         tag: 'title',

package/dist/es/jats/jats-exporter.js

@@ -423,9 +423,11 @@ export class JATSExporter {
             }
         };
         this.buildBody = (fragment) => {
-            const content = this.serializeFragment(fragment);
             const body = this.document.createElement('body');
-            body.appendChild(content);
+            fragment.forEach((cFragment) => {
+                const serializedNode = this.serializeNode(cFragment);
+                body.append(...serializedNode.childNodes);
+            });
             this.fixBody(body, fragment);
             return body;
         };
@@ -591,8 +593,8 @@ export class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
-                affiliations_section: () => '',
-                contributors_section: () => '',
+                affiliations: () => '',
+                contributors: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],
                 contributor: () => '',
                 affiliation: () => '',
@@ -602,6 +604,9 @@ export class JATSExporter {
                 bibliography_item: () => '',
                 comment_list: () => '',
                 keywords_group: () => '',
+                body: () => ['body', 0],
+                abstracts: () => ['abstract', 0],
+                backmatter: () => ['backmatter', 0],
                 bibliography_section: (node) => [
                     'ref-list',
                     { id: normalizeID(node.attrs.id) },
@@ -780,7 +785,7 @@ export class JATSExporter {
                 },
                 keyword: () => '',
                 keywords_element: () => '',
-                keywords_section: () => '',
+                keywords: () => '',
                 link: (node) => {
                     const text = node.textContent;
                     if (!text) {

package/dist/es/lib/utils.js

@@ -84,3 +84,11 @@ export const getTrimmedTextContent = (node, querySelector) => {
     }
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
+export const groupBy = (list, getKey) => list.reduce((previous, currentItem) => {
+    const group = getKey(currentItem);
+    if (!previous[group]) {
+        previous[group] = [];
+    }
+    previous[group].push(currentItem);
+    return previous;
+}, {});

package/dist/es/schema/index.js

@@ -29,6 +29,7 @@ import { comment } from './nodes/comment';
 import { commentList } from './nodes/comment_list';
 import { contributor } from './nodes/contributor';
 import { contributorsSection } from './nodes/contributors_section';
+import { coreSection } from './nodes/core_section';
 import { crossReference } from './nodes/cross_reference';
 import { doc } from './nodes/doc';
 import { equation } from './nodes/equation';
@@ -151,6 +152,9 @@ export const schema = new Schema({
         caption,
         caption_title: captionTitle,
         citation,
+        abstracts: coreSection,
+        body: coreSection,
+        backmatter: coreSection,
         cross_reference: crossReference,
         doc,
         equation,
@@ -168,7 +172,7 @@ export const schema = new Schema({
         inline_footnote: inlineFootnote,
         keyword,
         keywords_element: keywordsElement,
-        keywords_section: keywordsSection,
+        keywords: keywordsSection,
         keywords_group: keywordsGroup,
         link,
         list_item: listItem,
@@ -199,7 +203,7 @@ export const schema = new Schema({
         meta_section: metaSection,
         contributor: contributor,
         table_element_footer: tableElementFooter,
-        affiliations_section: affiliationsSection,
-        contributors_section: contributorsSection,
+        affiliations: affiliationsSection,
+        contributors: contributorsSection,
     },
 });

package/dist/es/schema/nodes/affiliations_section.js

@@ -8,4 +8,4 @@ export const affiliationsSection = {
     selectable: false,
     toDOM: () => ['section', 0],
 };
-export const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations_section;
+export const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations;

package/dist/es/schema/nodes/contributors_section.js

@@ -8,4 +8,4 @@ export const contributorsSection = {
     selectable: false,
     toDOM: () => ['section', 0],
 };
-export const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors_section;
+export const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors;

package/dist/es/schema/nodes/core_section.js

@@ -0,0 +1,24 @@
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+export const coreSection = {
+    content: '(section | sections)*',
+    atom: true,
+    attrs: {
+        id: { default: '' },
+    },
+    group: 'block sections',
+    toDOM: () => ['section', 0],
+};

package/dist/es/schema/nodes/graphical_abstract_section.js

@@ -18,7 +18,6 @@ export const graphicalAbstractSection = {
     attrs: {
         id: { default: '' },
         category: { default: '' },
-        dataTracked: { default: null },
     },
     group: 'block sections',
     selectable: false,

package/dist/es/schema/nodes/keywords_section.js

@@ -40,4 +40,4 @@ export const keywordsSection = {
         ];
     },
 };
-export const isKeywordsSectionNode = (node) => node.type === node.type.schema.nodes.keywords_section;
+export const isKeywordsSectionNode = (node) => node.type === node.type.schema.nodes.keywords;

package/dist/es/schema/nodes/manuscript.js

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 export const manuscript = {
-    content: '(section | sections)+ meta_section',
+    content: 'contributors? affiliations? keywords? abstracts body backmatter meta_section',
     attrs: {
         id: { default: '' },
     },

package/dist/es/transformer/decode.js

@@ -28,11 +28,12 @@ import { ObjectTypes, } from '@manuscripts/json-schema';
 import debug from 'debug';
 import { DOMParser } from 'prosemirror-model';
 import { MissingElement } from '../errors';
+import { groupBy } from '../lib/utils';
 import { schema, } from '../schema';
 import { insertHighlightMarkers } from './highlight-markers';
 import { generateNodeID } from './id';
 import { ExtraObjectTypes, hasObjectType, isCommentAnnotation, isManuscript, } from './object-types';
-import { chooseSectionLableName, chooseSectionNodeType, chooseSecType, guessSectionCategory, } from './section-category';
+import { chooseCoreSectionBySection, chooseSectionLableName, chooseSectionNodeType, chooseSecType, guessSectionCategory, } from './section-category';
 import { timestamp } from './timestamp';
 const warn = debug('manuscripts-transform');
 const parser = DOMParser.fromSchema(schema);
@@ -53,6 +54,7 @@ export const sortSectionsByPriority = (a, b) => a.priority === b.priority ? 0 :
 const getSections = (modelMap) => getModelsByType(modelMap, ObjectTypes.Section).sort(sortSectionsByPriority);
 const getAffiliations = (modelMap) => getModelsByType(modelMap, ObjectTypes.Affiliation);
 const getContributors = (modelMap) => getModelsByType(modelMap, ObjectTypes.Contributor);
+const getKeywordElements = (modelMap) => getModelsByType(modelMap, ObjectTypes.KeywordsElement);
 export const isManuscriptNode = (model) => model !== null;
 const isParagraphElement = hasObjectType(ObjectTypes.ParagraphElement);
 const isFootnote = hasObjectType(ObjectTypes.Footnote);
@@ -76,10 +78,13 @@ export class Decoder {
         ]);
     }
     handleMissingRootSectionNodes(rootSectionNodes) {
-        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations_section')) {
+        if (!rootSectionNodes.find((node) => node.type.name === 'keywords')) {
+            this.createKeywordsSectionNode(rootSectionNodes);
+        }
+        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations')) {
             this.createAffiliationSectionNode(rootSectionNodes);
         }
-        if (!rootSectionNodes.find((node) => node.type.name === 'contributors_section')) {
+        if (!rootSectionNodes.find((node) => node.type.name === 'contributors')) {
             this.createContributorSectionNode(rootSectionNodes);
         }
     }
@@ -87,37 +92,79 @@ export class Decoder {
         const affiliationNodes = getAffiliations(this.modelMap)
             .map((affiliation) => this.decode(affiliation))
             .filter(Boolean);
-        if (affiliationNodes.length) {
-            const node = schema.nodes.affiliations_section.createAndFill({
-                id: generateNodeID(schema.nodes.section),
-            }, affiliationNodes);
-            rootSectionNodes.unshift(node);
-        }
+        const node = schema.nodes.affiliations.createAndFill({
+            id: generateNodeID(schema.nodes.section),
+        }, affiliationNodes);
+        rootSectionNodes.unshift(node);
     }
     createContributorSectionNode(rootSectionNodes) {
         const contributorNodes = getContributors(this.modelMap)
             .map((contributor) => this.decode(contributor))
             .filter(Boolean);
-        if (contributorNodes.length) {
-            const node = schema.nodes.contributors_section.createAndFill({
+        const node = schema.nodes.contributors.createAndFill({
+            id: generateNodeID(schema.nodes.section),
+        }, contributorNodes);
+        rootSectionNodes.unshift(node);
+    }
+    createKeywordsSectionNode(rootSectionNodes) {
+        const keywordElementNodes = getKeywordElements(this.modelMap)
+            .map((keywordEl) => this.decode(keywordEl))
+            .filter(Boolean);
+        if (keywordElementNodes) {
+            const node = schema.nodes.keywords.createAndFill({
                 id: generateNodeID(schema.nodes.section),
-            }, contributorNodes);
+            }, [
+                schema.nodes.section_title.create({}, schema.text('Keywords')),
+                ...keywordElementNodes,
+            ]);
             rootSectionNodes.unshift(node);
         }
     }
     createRootSectionNodes() {
-        let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
+        let rootSections = getSections(this.modelMap)
+            .filter((section) => !section.path || section.path.length <= 1)
+            .filter((section) => section.category !== 'MPSectionCategory:contributors' &&
+            section.category !== 'MPSectionCategory:affiliations' &&
+            section.category !== 'MPSectionCategory:keywords');
         rootSections = this.addGeneratedLabels(rootSections);
-        const rootSectionNodes = rootSections
+        const sectionGroups = groupBy(rootSections, (sec) => {
+            var _a;
+            return chooseCoreSectionBySection((_a = sec.category) !== null && _a !== void 0 ? _a : '');
+        });
+        this.ensureCoreSectionsExist(sectionGroups);
+        const absSectionNode = sectionGroups['MPSectionCategory:abstracts']
             .map(this.decode)
             .filter(isManuscriptNode);
-        this.handleMissingRootSectionNodes(rootSectionNodes);
-        if (!rootSectionNodes.length) {
-            rootSectionNodes.push(schema.nodes.section.createAndFill({
-                id: generateNodeID(schema.nodes.section),
-            }));
+        const bodySectionNodes = sectionGroups['MPSectionCategory:body']
+            .map(this.decode)
+            .filter(isManuscriptNode);
+        const backmatterSectionNodes = sectionGroups['MPSectionCategory:backmatter']
+            .map(this.decode)
+            .filter(isManuscriptNode);
+        const abstractCoreSectionNodes = this.createAndFill(schema.nodes.abstracts, absSectionNode);
+        const bodyCoreSectionNodes = this.createAndFill(schema.nodes.body, bodySectionNodes);
+        const backmatterCoreSectionNodes = this.createAndFill(schema.nodes.backmatter, backmatterSectionNodes);
+        return [
+            abstractCoreSectionNodes,
+            bodyCoreSectionNodes,
+            backmatterCoreSectionNodes,
+        ];
+    }
+    ensureCoreSectionsExist(coreSections) {
+        if (!coreSections['MPSectionCategory:abstracts']) {
+            coreSections['MPSectionCategory:abstracts'] = [];
         }
-        return rootSectionNodes;
+        if (!coreSections['MPSectionCategory:body']) {
+            coreSections['MPSectionCategory:body'] = [];
+        }
+        if (!coreSections['MPSectionCategory:backmatter']) {
+            coreSections['MPSectionCategory:backmatter'] = [];
+        }
+    }
+    createAndFill(nodeType, content) {
+        return nodeType.createAndFill({
+            id: generateNodeID(nodeType),
+        }, content);
     }
     createCommentsNode(model) {
         const comments = [];
@@ -622,6 +669,7 @@ export class Decoder {
         this.getModel = (id) => this.modelMap.get(id);
         this.createArticleNode = (manuscriptID) => {
             const rootSectionNodes = this.createRootSectionNodes();
+            this.handleMissingRootSectionNodes(rootSectionNodes);
             const metaSectionNode = this.createMetaSectionNode();
             const contents = [...rootSectionNodes, metaSectionNode];
             return schema.nodes.manuscript.create({

package/dist/es/transformer/encode.js

@@ -417,31 +417,6 @@ const encoders = {
     keywords_group: (node) => ({
         type: node.attrs.type,
     }),
-    keywords_section: (node, parent, path, priority) => ({
-        category: buildSectionCategory(node),
-        priority: priority.value++,
-        title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title),
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
-    affiliations_section: (node, parent, path, priority) => ({
-        category: buildSectionCategory(node),
-        priority: priority.value++,
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
-    contributors_section: (node, parent, path, priority) => ({
-        category: buildSectionCategory(node),
-        priority: priority.value++,
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
     missing_figure: (node) => ({
         position: node.attrs.position || undefined,
     }),
@@ -561,6 +536,14 @@ export const modelFromNode = (node, parent, path, priority) => {
     }
     return { model, commentAnnotationsMap };
 };
+function isCoreSection(child) {
+    return (child.type === schema.nodes.abstracts ||
+        child.type === schema.nodes.body ||
+        child.type === schema.nodes.backmatter ||
+        child.type === schema.nodes.affiliations ||
+        child.type === schema.nodes.contributors ||
+        child.type === schema.nodes.keywords);
+}
 export const encode = (node) => {
     const models = new Map();
     const priority = {
@@ -568,6 +551,10 @@ export const encode = (node) => {
     };
     const placeholders = ['placeholder', 'placeholder_element'];
     const addModel = (path, parent) => (child) => {
+        if (isCoreSection(child)) {
+            child.forEach(addModel([], child));
+            return;
+        }
         if (!child.attrs.id) {
             return;
         }

package/dist/es/transformer/node-names.js

@@ -35,6 +35,6 @@ export const nodeNames = new Map([
     [schema.nodes.table_element, 'Table'],
     [schema.nodes.blockquote_element, 'Block Quote'],
     [schema.nodes.pullquote_element, 'Pull Quote'],
-    [schema.nodes.keywords_section, 'Section'],
+    [schema.nodes.keywords, 'Section'],
     [schema.nodes.toc_section, 'Section'],
 ]);

package/dist/es/transformer/node-title.js

@@ -45,7 +45,7 @@ export const nodeTitle = (node) => {
         case nodes.section:
         case nodes.bibliography_section:
         case nodes.footnotes_section:
-        case nodes.keywords_section:
+        case nodes.keywords:
         case nodes.toc_section:
         case nodes.graphical_abstract_section:
             return snippetOfNodeType(node, nodes.section_title);

package/dist/es/transformer/node-types.js

@@ -16,6 +16,9 @@
 import { ObjectTypes } from '@manuscripts/json-schema';
 import { GROUP_ELEMENT, GROUP_EXECUTABLE, GROUP_SECTION, hasGroup, schema, } from '../schema';
 export const nodeTypesMap = new Map([
+    [schema.nodes.abstracts, ObjectTypes.Section],
+    [schema.nodes.body, ObjectTypes.Section],
+    [schema.nodes.backmatter, ObjectTypes.Section],
     [schema.nodes.comment, ObjectTypes.CommentAnnotation],
     [schema.nodes.bibliography_item, ObjectTypes.BibliographyItem],
     [schema.nodes.bibliography_element, ObjectTypes.BibliographyElement],
@@ -37,7 +40,7 @@ export const nodeTypesMap = new Map([
     [schema.nodes.inline_equation, ObjectTypes.InlineMathFragment],
     [schema.nodes.keyword, ObjectTypes.Keyword],
     [schema.nodes.keywords_element, ObjectTypes.KeywordsElement],
-    [schema.nodes.keywords_section, ObjectTypes.Section],
+    [schema.nodes.keywords, ObjectTypes.Section],
     [schema.nodes.keywords_group, ObjectTypes.KeywordGroup],
     [schema.nodes.listing, ObjectTypes.Listing],
     [schema.nodes.listing_element, ObjectTypes.ListingElement],
@@ -54,8 +57,8 @@ export const nodeTypesMap = new Map([
     [schema.nodes.affiliation, ObjectTypes.Affiliation],
     [schema.nodes.contributor, ObjectTypes.Contributor],
     [schema.nodes.table_element_footer, ObjectTypes.TableElementFooter],
-    [schema.nodes.contributors_section, ObjectTypes.Section],
-    [schema.nodes.affiliations_section, ObjectTypes.Section],
+    [schema.nodes.contributors, ObjectTypes.Section],
+    [schema.nodes.affiliations, ObjectTypes.Section],
 ]);
 export const isExecutableNodeType = (type) => hasGroup(type, GROUP_EXECUTABLE);
 export const isElementNodeType = (type) => hasGroup(type, GROUP_ELEMENT);

package/dist/es/transformer/section-category.js

@@ -19,7 +19,7 @@ import { schema } from '../schema';
 const sectionNodeTypes = [
     schema.nodes.bibliography_section,
     schema.nodes.footnotes_section,
-    schema.nodes.keywords_section,
+    schema.nodes.keywords,
     schema.nodes.section,
     schema.nodes.toc_section,
 ];
@@ -40,11 +40,11 @@ export const chooseSectionNodeType = (category) => {
         case 'MPSectionCategory:endnotes':
             return schema.nodes.footnotes_section;
         case 'MPSectionCategory:keywords':
-            return schema.nodes.keywords_section;
+            return schema.nodes.keywords;
         case 'MPSectionCategory:affiliations':
-            return schema.nodes.affiliations_section;
+            return schema.nodes.affiliations;
         case 'MPSectionCategory:contributors':
-            return schema.nodes.contributors_section;
+            return schema.nodes.contributors;
         case 'MPSectionCategory:toc':
             return schema.nodes.toc_section;
         default:
@@ -82,15 +82,15 @@ export const buildSectionCategory = (node) => {
             return 'MPSectionCategory:bibliography';
         case schema.nodes.footnotes_section:
             return 'MPSectionCategory:endnotes';
-        case schema.nodes.keywords_section:
+        case schema.nodes.keywords:
             return 'MPSectionCategory:keywords';
         case schema.nodes.toc_section:
             return 'MPSectionCategory:toc';
         case schema.nodes.graphical_abstract_section:
             return 'MPSectionCategory:abstract-graphical';
-        case schema.nodes.affiliations_section:
+        case schema.nodes.affiliations:
             return 'MPSectionCategory:affiliations';
-        case schema.nodes.contributors_section:
+        case schema.nodes.contributors:
             return 'MPSectionCategory:contributors';
         default:
             return node.attrs.category || undefined;
@@ -117,6 +117,32 @@ export const chooseSecType = (sectionCategory) => {
             return suffix;
     }
 };
+export const chooseCoreSectionBySection = (section) => {
+    switch (section) {
+        case 'MPSectionCategory:abstract':
+        case 'MPSectionCategory:abstract-teaser':
+        case 'MPSectionCategory:abstract-graphical':
+            return 'MPSectionCategory:abstracts';
+        case 'MPSectionCategory:acknowledgement':
+        case 'MPSectionCategory:availability':
+        case 'MPSectionCategory:conclusions':
+        case 'MPSectionCategory:bibliography':
+        case 'MPSectionCategory:discussion':
+        case 'MPSectionCategory:endnotes':
+        case 'MPSectionCategory:appendices':
+        case 'MPSectionCategory:competing-interests':
+        case 'MPSectionCategory:con':
+        case 'MPSectionCategory:deceased':
+        case 'MPSectionCategory:ethics-statement':
+        case 'MPSectionCategory:financial-disclosure':
+        case 'MPSectionCategory:supplementary-material':
+        case 'MPSectionCategory:supported-by':
+        case 'MPSectionCategory:abbreviations':
+        case 'MPSectionCategory:results':
+            return 'MPSectionCategory:backmatter';
+    }
+    return 'MPSectionCategory:body';
+};
 export const chooseSectionCategoryByType = (secType) => {
     switch (secType) {
         case 'abstract':

package/dist/types/lib/utils.d.ts

@@ -27,3 +27,4 @@ export declare const findParentNodeClosestToPos: ($pos: ResolvedPos, predicate:
     node: ProsemirrorNode;
 } | undefined;
 export declare const getTrimmedTextContent: (node: Element | Document, querySelector: string) => string | null | undefined;
+export declare const groupBy: <T, K extends string | number | symbol>(list: T[], getKey: (item: T) => K) => Record<K, T[]>;

package/dist/types/schema/nodes/core_section.d.ts

@@ -0,0 +1,25 @@
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { NodeSpec } from 'prosemirror-model';
+import { ManuscriptNode } from '../types';
+interface Attrs {
+    id: string;
+}
+export interface CoreSection extends ManuscriptNode {
+    attrs: Attrs;
+}
+export declare const coreSection: NodeSpec;
+export {};

package/dist/types/schema/types.d.ts

@@ -17,7 +17,7 @@ import { Fragment, Mark as ProsemirrorMark, MarkType, Node as ProsemirrorNode, N
 import { EditorState, NodeSelection, Plugin, TextSelection, Transaction } from 'prosemirror-state';
 import { EditorView, NodeView } from 'prosemirror-view';
 export type Marks = 'bold' | 'code' | 'italic' | 'smallcaps' | 'strikethrough' | 'styled' | 'subscript' | 'superscript' | 'underline' | 'tracked_insert' | 'tracked_delete';
-export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comment_list' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keywords_group' | 'keywords_section' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'meta_section' | 'contributor' | 'table_element_footer' | 'affiliations_section' | 'contributors_section';
+export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comment_list' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keywords_group' | 'keywords' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'abstracts' | 'body' | 'backmatter' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'meta_section' | 'contributor' | 'table_element_footer' | 'affiliations' | 'contributors';
 export type ManuscriptSchema = Schema<Nodes, Marks>;
 export type ManuscriptEditorState = EditorState;
 export type ManuscriptEditorView = EditorView;

package/dist/types/transformer/decode.d.ts

@@ -30,7 +30,10 @@ export declare class Decoder {
     private handleMissingRootSectionNodes;
     private createAffiliationSectionNode;
     private createContributorSectionNode;
+    private createKeywordsSectionNode;
     private createRootSectionNodes;
+    private ensureCoreSectionsExist;
+    private createAndFill;
     private createCommentsNode;
     private getComments;
     private extractListing;

package/dist/types/transformer/section-category.d.ts

@@ -25,6 +25,7 @@ export declare const guessSectionCategory: (elements: Element[]) => SectionCateg
 export declare const buildSectionCategory: (node: ManuscriptNode) => SectionCategory | undefined;
 export declare const chooseJatsFnType: (footnoteType: string) => string;
 export declare const chooseSecType: (sectionCategory: SectionCategory) => SecType;
+export declare const chooseCoreSectionBySection: (section: string) => string;
 export declare const chooseSectionCategoryByType: (secType: string) => SectionCategory | undefined;
 export declare const chooseSectionCategory: (section: HTMLElement) => SectionCategory | undefined;
 export declare const chooseSectionCategoryFromTitle: (title: string | null) => SectionCategory | undefined;

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "1.5.2-LEAN-3047",
+  "version": "1.5.2-LEAN-3032",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",
@@ -82,4 +82,4 @@
     "prosemirror-state": "^1.4.2",
     "prosemirror-view": "^1.29.1"
   }
-}
+}