@manuscripts/transform 1.5.2-LEAN-3032 → 1.5.2-LIT-528106

package/dist/es/jats/importer/jats-body-dom-parser.js

@@ -501,7 +501,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="affiliations"]',
-        node: 'affiliations',
+        node: 'affiliations_section',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -513,7 +513,7 @@ const nodes = [
     {
         tag: 'aff',
         node: 'affiliation',
-        context: 'affiliations/',
+        context: 'affiliations_section/',
         getAttrs: (node) => {
             const element = node;
             const aff = {
@@ -560,7 +560,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="contributors"]',
-        node: 'contributors',
+        node: 'contributors_section',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -572,7 +572,7 @@ const nodes = [
     {
         tag: 'contrib',
         node: 'contributor',
-        context: 'contributors/',
+        context: 'contributors_section/',
         getAttrs: (node) => {
             const element = node;
             const contrib = {
@@ -627,7 +627,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="keywords"]',
-        node: 'keywords',
+        node: 'keywords_section',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -638,21 +638,9 @@ const nodes = [
     },
     {
         tag: 'kwd-group-list',
-        context: 'keywords/',
+        context: 'keywords_section/',
         node: 'keywords_element',
     },
-    {
-        tag: 'sec[sec-type="abstracts"]',
-        node: 'abstracts',
-    },
-    {
-        tag: 'sec[sec-type="body"]',
-        node: 'body',
-    },
-    {
-        tag: 'sec[sec-type="backmatter"]',
-        node: 'backmatter',
-    },
     {
         tag: 'sec',
         node: 'section',
@@ -732,7 +720,7 @@ const nodes = [
     {
         tag: 'title',
         node: 'section_title',
-        context: 'section/|footnotes_section/|bibliography_section/|keywords/',
+        context: 'section/|footnotes_section/|bibliography_section/|keywords_section/',
     },
     {
         tag: 'title',

package/dist/es/jats/jats-exporter.js

@@ -423,11 +423,9 @@ export class JATSExporter {
             }
         };
         this.buildBody = (fragment) => {
+            const content = this.serializeFragment(fragment);
             const body = this.document.createElement('body');
-            fragment.forEach((cFragment) => {
-                const serializedNode = this.serializeNode(cFragment);
-                body.append(...serializedNode.childNodes);
-            });
+            body.appendChild(content);
             this.fixBody(body, fragment);
             return body;
         };
@@ -593,8 +591,8 @@ export class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
-                affiliations: () => '',
-                contributors: () => '',
+                affiliations_section: () => '',
+                contributors_section: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],
                 contributor: () => '',
                 affiliation: () => '',
@@ -604,9 +602,6 @@ export class JATSExporter {
                 bibliography_item: () => '',
                 comment_list: () => '',
                 keywords_group: () => '',
-                body: () => ['body', 0],
-                abstracts: () => ['abstract', 0],
-                backmatter: () => ['backmatter', 0],
                 bibliography_section: (node) => [
                     'ref-list',
                     { id: normalizeID(node.attrs.id) },
@@ -785,7 +780,7 @@ export class JATSExporter {
                 },
                 keyword: () => '',
                 keywords_element: () => '',
-                keywords: () => '',
+                keywords_section: () => '',
                 link: (node) => {
                     const text = node.textContent;
                     if (!text) {

package/dist/es/lib/utils.js

@@ -84,11 +84,15 @@ export const getTrimmedTextContent = (node, querySelector) => {
     }
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
-export const groupBy = (list, getKey) => list.reduce((previous, currentItem) => {
-    const group = getKey(currentItem);
-    if (!previous[group]) {
-        previous[group] = [];
+export function modelsEqual(model, model2) {
+    for (const v in model) {
+        for (const v2 in model2) {
+            const prepV = typeof v == 'object' ? JSON.stringify(v) : v;
+            const prepV2 = typeof v2 == 'object' ? JSON.stringify(v2) : v2;
+            if (prepV !== prepV2) {
+                return false;
+            }
+        }
     }
-    previous[group].push(currentItem);
-    return previous;
-}, {});
+    return true;
+}

package/dist/es/schema/index.js

@@ -29,7 +29,6 @@ import { comment } from './nodes/comment';
 import { commentList } from './nodes/comment_list';
 import { contributor } from './nodes/contributor';
 import { contributorsSection } from './nodes/contributors_section';
-import { coreSection } from './nodes/core_section';
 import { crossReference } from './nodes/cross_reference';
 import { doc } from './nodes/doc';
 import { equation } from './nodes/equation';
@@ -152,9 +151,6 @@ export const schema = new Schema({
         caption,
         caption_title: captionTitle,
         citation,
-        abstracts: coreSection,
-        body: coreSection,
-        backmatter: coreSection,
         cross_reference: crossReference,
         doc,
         equation,
@@ -172,7 +168,7 @@ export const schema = new Schema({
         inline_footnote: inlineFootnote,
         keyword,
         keywords_element: keywordsElement,
-        keywords: keywordsSection,
+        keywords_section: keywordsSection,
         keywords_group: keywordsGroup,
         link,
         list_item: listItem,
@@ -203,7 +199,7 @@ export const schema = new Schema({
         meta_section: metaSection,
         contributor: contributor,
         table_element_footer: tableElementFooter,
-        affiliations: affiliationsSection,
-        contributors: contributorsSection,
+        affiliations_section: affiliationsSection,
+        contributors_section: contributorsSection,
     },
 });

package/dist/es/schema/nodes/affiliations_section.js

@@ -8,4 +8,4 @@ export const affiliationsSection = {
     selectable: false,
     toDOM: () => ['section', 0],
 };
-export const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations;
+export const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations_section;

package/dist/es/schema/nodes/contributors_section.js

@@ -8,4 +8,4 @@ export const contributorsSection = {
     selectable: false,
     toDOM: () => ['section', 0],
 };
-export const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors;
+export const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors_section;

package/dist/es/schema/nodes/graphical_abstract_section.js

@@ -18,6 +18,7 @@ export const graphicalAbstractSection = {
     attrs: {
         id: { default: '' },
         category: { default: '' },
+        dataTracked: { default: null },
     },
     group: 'block sections',
     selectable: false,

package/dist/es/schema/nodes/keywords_section.js

@@ -40,4 +40,4 @@ export const keywordsSection = {
         ];
     },
 };
-export const isKeywordsSectionNode = (node) => node.type === node.type.schema.nodes.keywords;
+export const isKeywordsSectionNode = (node) => node.type === node.type.schema.nodes.keywords_section;

package/dist/es/schema/nodes/manuscript.js

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 export const manuscript = {
-    content: 'contributors? affiliations? keywords? abstracts body backmatter meta_section',
+    content: '(section | sections)+ meta_section',
     attrs: {
         id: { default: '' },
     },

package/dist/es/transformer/decode.js

@@ -28,12 +28,11 @@ import { ObjectTypes, } from '@manuscripts/json-schema';
 import debug from 'debug';
 import { DOMParser } from 'prosemirror-model';
 import { MissingElement } from '../errors';
-import { groupBy } from '../lib/utils';
 import { schema, } from '../schema';
 import { insertHighlightMarkers } from './highlight-markers';
 import { generateNodeID } from './id';
 import { ExtraObjectTypes, hasObjectType, isCommentAnnotation, isManuscript, } from './object-types';
-import { chooseCoreSectionBySection, chooseSectionLableName, chooseSectionNodeType, chooseSecType, guessSectionCategory, } from './section-category';
+import { chooseSectionLableName, chooseSectionNodeType, chooseSecType, guessSectionCategory, } from './section-category';
 import { timestamp } from './timestamp';
 const warn = debug('manuscripts-transform');
 const parser = DOMParser.fromSchema(schema);
@@ -54,7 +53,6 @@ export const sortSectionsByPriority = (a, b) => a.priority === b.priority ? 0 :
 const getSections = (modelMap) => getModelsByType(modelMap, ObjectTypes.Section).sort(sortSectionsByPriority);
 const getAffiliations = (modelMap) => getModelsByType(modelMap, ObjectTypes.Affiliation);
 const getContributors = (modelMap) => getModelsByType(modelMap, ObjectTypes.Contributor);
-const getKeywordElements = (modelMap) => getModelsByType(modelMap, ObjectTypes.KeywordsElement);
 export const isManuscriptNode = (model) => model !== null;
 const isParagraphElement = hasObjectType(ObjectTypes.ParagraphElement);
 const isFootnote = hasObjectType(ObjectTypes.Footnote);
@@ -78,13 +76,10 @@ export class Decoder {
         ]);
     }
     handleMissingRootSectionNodes(rootSectionNodes) {
-        if (!rootSectionNodes.find((node) => node.type.name === 'keywords')) {
-            this.createKeywordsSectionNode(rootSectionNodes);
-        }
-        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations')) {
+        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations_section')) {
             this.createAffiliationSectionNode(rootSectionNodes);
         }
-        if (!rootSectionNodes.find((node) => node.type.name === 'contributors')) {
+        if (!rootSectionNodes.find((node) => node.type.name === 'contributors_section')) {
             this.createContributorSectionNode(rootSectionNodes);
         }
     }
@@ -92,79 +87,37 @@ export class Decoder {
         const affiliationNodes = getAffiliations(this.modelMap)
             .map((affiliation) => this.decode(affiliation))
             .filter(Boolean);
-        const node = schema.nodes.affiliations.createAndFill({
-            id: generateNodeID(schema.nodes.section),
-        }, affiliationNodes);
-        rootSectionNodes.unshift(node);
+        if (affiliationNodes.length) {
+            const node = schema.nodes.affiliations_section.createAndFill({
+                id: generateNodeID(schema.nodes.section),
+            }, affiliationNodes);
+            rootSectionNodes.unshift(node);
+        }
     }
     createContributorSectionNode(rootSectionNodes) {
         const contributorNodes = getContributors(this.modelMap)
             .map((contributor) => this.decode(contributor))
             .filter(Boolean);
-        const node = schema.nodes.contributors.createAndFill({
-            id: generateNodeID(schema.nodes.section),
-        }, contributorNodes);
-        rootSectionNodes.unshift(node);
-    }
-    createKeywordsSectionNode(rootSectionNodes) {
-        const keywordElementNodes = getKeywordElements(this.modelMap)
-            .map((keywordEl) => this.decode(keywordEl))
-            .filter(Boolean);
-        if (keywordElementNodes) {
-            const node = schema.nodes.keywords.createAndFill({
+        if (contributorNodes.length) {
+            const node = schema.nodes.contributors_section.createAndFill({
                 id: generateNodeID(schema.nodes.section),
-            }, [
-                schema.nodes.section_title.create({}, schema.text('Keywords')),
-                ...keywordElementNodes,
-            ]);
+            }, contributorNodes);
             rootSectionNodes.unshift(node);
         }
     }
     createRootSectionNodes() {
-        let rootSections = getSections(this.modelMap)
-            .filter((section) => !section.path || section.path.length <= 1)
-            .filter((section) => section.category !== 'MPSectionCategory:contributors' &&
-            section.category !== 'MPSectionCategory:affiliations' &&
-            section.category !== 'MPSectionCategory:keywords');
+        let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
         rootSections = this.addGeneratedLabels(rootSections);
-        const sectionGroups = groupBy(rootSections, (sec) => {
-            var _a;
-            return chooseCoreSectionBySection((_a = sec.category) !== null && _a !== void 0 ? _a : '');
-        });
-        this.ensureCoreSectionsExist(sectionGroups);
-        const absSectionNode = sectionGroups['MPSectionCategory:abstracts']
-            .map(this.decode)
-            .filter(isManuscriptNode);
-        const bodySectionNodes = sectionGroups['MPSectionCategory:body']
+        const rootSectionNodes = rootSections
             .map(this.decode)
             .filter(isManuscriptNode);
-        const backmatterSectionNodes = sectionGroups['MPSectionCategory:backmatter']
-            .map(this.decode)
-            .filter(isManuscriptNode);
-        const abstractCoreSectionNodes = this.createAndFill(schema.nodes.abstracts, absSectionNode);
-        const bodyCoreSectionNodes = this.createAndFill(schema.nodes.body, bodySectionNodes);
-        const backmatterCoreSectionNodes = this.createAndFill(schema.nodes.backmatter, backmatterSectionNodes);
-        return [
-            abstractCoreSectionNodes,
-            bodyCoreSectionNodes,
-            backmatterCoreSectionNodes,
-        ];
-    }
-    ensureCoreSectionsExist(coreSections) {
-        if (!coreSections['MPSectionCategory:abstracts']) {
-            coreSections['MPSectionCategory:abstracts'] = [];
-        }
-        if (!coreSections['MPSectionCategory:body']) {
-            coreSections['MPSectionCategory:body'] = [];
-        }
-        if (!coreSections['MPSectionCategory:backmatter']) {
-            coreSections['MPSectionCategory:backmatter'] = [];
+        this.handleMissingRootSectionNodes(rootSectionNodes);
+        if (!rootSectionNodes.length) {
+            rootSectionNodes.push(schema.nodes.section.createAndFill({
+                id: generateNodeID(schema.nodes.section),
+            }));
         }
-    }
-    createAndFill(nodeType, content) {
-        return nodeType.createAndFill({
-            id: generateNodeID(nodeType),
-        }, content);
+        return rootSectionNodes;
     }
     createCommentsNode(model) {
         const comments = [];
@@ -669,7 +622,6 @@ export class Decoder {
         this.getModel = (id) => this.modelMap.get(id);
         this.createArticleNode = (manuscriptID) => {
             const rootSectionNodes = this.createRootSectionNodes();
-            this.handleMissingRootSectionNodes(rootSectionNodes);
             const metaSectionNode = this.createMetaSectionNode();
             const contents = [...rootSectionNodes, metaSectionNode];
             return schema.nodes.manuscript.create({

package/dist/es/transformer/encode.js

@@ -15,10 +15,11 @@
  */
 import { DOMSerializer } from 'prosemirror-model';
 import serializeToXML from 'w3c-xmlserializer';
-import { iterateChildren } from '../lib/utils';
+import { iterateChildren, modelsEqual } from '../lib/utils';
 import { hasGroup, isHighlightMarkerNode, isSectionNode, schema, } from '../schema';
 import { buildAttribution } from './builders';
 import { extractHighlightMarkers, isHighlightableModel, } from './highlight-markers';
+import { generateID } from './id';
 import { nodeTypesMap } from './node-types';
 import { buildSectionCategory } from './section-category';
 const serializer = DOMSerializer.fromSchema(schema);
@@ -417,6 +418,31 @@ const encoders = {
     keywords_group: (node) => ({
         type: node.attrs.type,
     }),
+    keywords_section: (node, parent, path, priority) => ({
+        category: buildSectionCategory(node),
+        priority: priority.value++,
+        title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title),
+        path: path.concat([node.attrs.id]),
+        elementIDs: childElements(node)
+            .map((childNode) => childNode.attrs.id)
+            .filter((id) => id),
+    }),
+    affiliations_section: (node, parent, path, priority) => ({
+        category: buildSectionCategory(node),
+        priority: priority.value++,
+        path: path.concat([node.attrs.id]),
+        elementIDs: childElements(node)
+            .map((childNode) => childNode.attrs.id)
+            .filter((id) => id),
+    }),
+    contributors_section: (node, parent, path, priority) => ({
+        category: buildSectionCategory(node),
+        priority: priority.value++,
+        path: path.concat([node.attrs.id]),
+        elementIDs: childElements(node)
+            .map((childNode) => childNode.attrs.id)
+            .filter((id) => id),
+    }),
     missing_figure: (node) => ({
         position: node.attrs.position || undefined,
     }),
@@ -536,25 +562,13 @@ export const modelFromNode = (node, parent, path, priority) => {
     }
     return { model, commentAnnotationsMap };
 };
-function isCoreSection(child) {
-    return (child.type === schema.nodes.abstracts ||
-        child.type === schema.nodes.body ||
-        child.type === schema.nodes.backmatter ||
-        child.type === schema.nodes.affiliations ||
-        child.type === schema.nodes.contributors ||
-        child.type === schema.nodes.keywords);
-}
-export const encode = (node) => {
+export const encode = (node, preserveWithRepeatedID = false) => {
     const models = new Map();
     const priority = {
         value: 1,
     };
     const placeholders = ['placeholder', 'placeholder_element'];
     const addModel = (path, parent) => (child) => {
-        if (isCoreSection(child)) {
-            child.forEach(addModel([], child));
-            return;
-        }
         if (!child.attrs.id) {
             return;
         }
@@ -568,8 +582,14 @@ export const encode = (node) => {
             return;
         }
         const { model } = modelFromNode(child, parent, path, priority);
-        if (models.has(model._id)) {
-            throw Error(`Encountered duplicate ids in models map while encoding: ${model._id}`);
+        const existingModel = models.get(model._id);
+        if (existingModel) {
+            if (preserveWithRepeatedID && !modelsEqual(model, existingModel)) {
+                model._id = generateID(model.objectType);
+            }
+            else {
+                throw Error(`Encountered duplicate ids in models map while encoding: ${model._id}`);
+            }
         }
         models.set(model._id, model);
         child.forEach(addModel(path.concat(child.attrs.id), child));

package/dist/es/transformer/node-names.js

@@ -35,6 +35,6 @@ export const nodeNames = new Map([
     [schema.nodes.table_element, 'Table'],
     [schema.nodes.blockquote_element, 'Block Quote'],
     [schema.nodes.pullquote_element, 'Pull Quote'],
-    [schema.nodes.keywords, 'Section'],
+    [schema.nodes.keywords_section, 'Section'],
     [schema.nodes.toc_section, 'Section'],
 ]);

package/dist/es/transformer/node-title.js

@@ -45,7 +45,7 @@ export const nodeTitle = (node) => {
         case nodes.section:
         case nodes.bibliography_section:
         case nodes.footnotes_section:
-        case nodes.keywords:
+        case nodes.keywords_section:
         case nodes.toc_section:
         case nodes.graphical_abstract_section:
             return snippetOfNodeType(node, nodes.section_title);

package/dist/es/transformer/node-types.js

@@ -16,9 +16,6 @@
 import { ObjectTypes } from '@manuscripts/json-schema';
 import { GROUP_ELEMENT, GROUP_EXECUTABLE, GROUP_SECTION, hasGroup, schema, } from '../schema';
 export const nodeTypesMap = new Map([
-    [schema.nodes.abstracts, ObjectTypes.Section],
-    [schema.nodes.body, ObjectTypes.Section],
-    [schema.nodes.backmatter, ObjectTypes.Section],
     [schema.nodes.comment, ObjectTypes.CommentAnnotation],
     [schema.nodes.bibliography_item, ObjectTypes.BibliographyItem],
     [schema.nodes.bibliography_element, ObjectTypes.BibliographyElement],
@@ -40,7 +37,7 @@ export const nodeTypesMap = new Map([
     [schema.nodes.inline_equation, ObjectTypes.InlineMathFragment],
     [schema.nodes.keyword, ObjectTypes.Keyword],
     [schema.nodes.keywords_element, ObjectTypes.KeywordsElement],
-    [schema.nodes.keywords, ObjectTypes.Section],
+    [schema.nodes.keywords_section, ObjectTypes.Section],
     [schema.nodes.keywords_group, ObjectTypes.KeywordGroup],
     [schema.nodes.listing, ObjectTypes.Listing],
     [schema.nodes.listing_element, ObjectTypes.ListingElement],
@@ -57,8 +54,8 @@ export const nodeTypesMap = new Map([
     [schema.nodes.affiliation, ObjectTypes.Affiliation],
     [schema.nodes.contributor, ObjectTypes.Contributor],
     [schema.nodes.table_element_footer, ObjectTypes.TableElementFooter],
-    [schema.nodes.contributors, ObjectTypes.Section],
-    [schema.nodes.affiliations, ObjectTypes.Section],
+    [schema.nodes.contributors_section, ObjectTypes.Section],
+    [schema.nodes.affiliations_section, ObjectTypes.Section],
 ]);
 export const isExecutableNodeType = (type) => hasGroup(type, GROUP_EXECUTABLE);
 export const isElementNodeType = (type) => hasGroup(type, GROUP_ELEMENT);

package/dist/es/transformer/section-category.js

@@ -19,7 +19,7 @@ import { schema } from '../schema';
 const sectionNodeTypes = [
     schema.nodes.bibliography_section,
     schema.nodes.footnotes_section,
-    schema.nodes.keywords,
+    schema.nodes.keywords_section,
     schema.nodes.section,
     schema.nodes.toc_section,
 ];
@@ -40,11 +40,11 @@ export const chooseSectionNodeType = (category) => {
         case 'MPSectionCategory:endnotes':
             return schema.nodes.footnotes_section;
         case 'MPSectionCategory:keywords':
-            return schema.nodes.keywords;
+            return schema.nodes.keywords_section;
         case 'MPSectionCategory:affiliations':
-            return schema.nodes.affiliations;
+            return schema.nodes.affiliations_section;
         case 'MPSectionCategory:contributors':
-            return schema.nodes.contributors;
+            return schema.nodes.contributors_section;
         case 'MPSectionCategory:toc':
             return schema.nodes.toc_section;
         default:
@@ -82,15 +82,15 @@ export const buildSectionCategory = (node) => {
             return 'MPSectionCategory:bibliography';
         case schema.nodes.footnotes_section:
             return 'MPSectionCategory:endnotes';
-        case schema.nodes.keywords:
+        case schema.nodes.keywords_section:
             return 'MPSectionCategory:keywords';
         case schema.nodes.toc_section:
             return 'MPSectionCategory:toc';
         case schema.nodes.graphical_abstract_section:
             return 'MPSectionCategory:abstract-graphical';
-        case schema.nodes.affiliations:
+        case schema.nodes.affiliations_section:
             return 'MPSectionCategory:affiliations';
-        case schema.nodes.contributors:
+        case schema.nodes.contributors_section:
             return 'MPSectionCategory:contributors';
         default:
             return node.attrs.category || undefined;
@@ -117,32 +117,6 @@ export const chooseSecType = (sectionCategory) => {
             return suffix;
     }
 };
-export const chooseCoreSectionBySection = (section) => {
-    switch (section) {
-        case 'MPSectionCategory:abstract':
-        case 'MPSectionCategory:abstract-teaser':
-        case 'MPSectionCategory:abstract-graphical':
-            return 'MPSectionCategory:abstracts';
-        case 'MPSectionCategory:acknowledgement':
-        case 'MPSectionCategory:availability':
-        case 'MPSectionCategory:conclusions':
-        case 'MPSectionCategory:bibliography':
-        case 'MPSectionCategory:discussion':
-        case 'MPSectionCategory:endnotes':
-        case 'MPSectionCategory:appendices':
-        case 'MPSectionCategory:competing-interests':
-        case 'MPSectionCategory:con':
-        case 'MPSectionCategory:deceased':
-        case 'MPSectionCategory:ethics-statement':
-        case 'MPSectionCategory:financial-disclosure':
-        case 'MPSectionCategory:supplementary-material':
-        case 'MPSectionCategory:supported-by':
-        case 'MPSectionCategory:abbreviations':
-        case 'MPSectionCategory:results':
-            return 'MPSectionCategory:backmatter';
-    }
-    return 'MPSectionCategory:body';
-};
 export const chooseSectionCategoryByType = (secType) => {
     switch (secType) {
         case 'abstract':

package/dist/types/lib/utils.d.ts

@@ -13,6 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
+import { Model } from '@manuscripts/json-schema';
 import { Node as ProsemirrorNode, ResolvedPos } from 'prosemirror-model';
 import { ManuscriptEditorState, ManuscriptNode } from '../schema';
 export declare function iterateChildren(node: ManuscriptNode, recurse?: boolean): Iterable<ManuscriptNode>;
@@ -27,4 +28,4 @@ export declare const findParentNodeClosestToPos: ($pos: ResolvedPos, predicate:
     node: ProsemirrorNode;
 } | undefined;
 export declare const getTrimmedTextContent: (node: Element | Document, querySelector: string) => string | null | undefined;
-export declare const groupBy: <T, K extends string | number | symbol>(list: T[], getKey: (item: T) => K) => Record<K, T[]>;
+export declare function modelsEqual(model: Model, model2: Model): boolean;

package/dist/types/schema/types.d.ts

@@ -17,7 +17,7 @@ import { Fragment, Mark as ProsemirrorMark, MarkType, Node as ProsemirrorNode, N
 import { EditorState, NodeSelection, Plugin, TextSelection, Transaction } from 'prosemirror-state';
 import { EditorView, NodeView } from 'prosemirror-view';
 export type Marks = 'bold' | 'code' | 'italic' | 'smallcaps' | 'strikethrough' | 'styled' | 'subscript' | 'superscript' | 'underline' | 'tracked_insert' | 'tracked_delete';
-export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comment_list' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keywords_group' | 'keywords' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'abstracts' | 'body' | 'backmatter' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'meta_section' | 'contributor' | 'table_element_footer' | 'affiliations' | 'contributors';
+export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comment_list' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keywords_group' | 'keywords_section' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'meta_section' | 'contributor' | 'table_element_footer' | 'affiliations_section' | 'contributors_section';
 export type ManuscriptSchema = Schema<Nodes, Marks>;
 export type ManuscriptEditorState = EditorState;
 export type ManuscriptEditorView = EditorView;

package/dist/types/transformer/decode.d.ts

@@ -30,10 +30,7 @@ export declare class Decoder {
     private handleMissingRootSectionNodes;
     private createAffiliationSectionNode;
     private createContributorSectionNode;
-    private createKeywordsSectionNode;
     private createRootSectionNodes;
-    private ensureCoreSectionsExist;
-    private createAndFill;
     private createCommentsNode;
     private getComments;
     private extractListing;

package/dist/types/transformer/encode.d.ts

@@ -25,5 +25,5 @@ export declare const modelFromNode: (node: ManuscriptNode, parent: ManuscriptNod
 interface PrioritizedValue {
     value: number;
 }
-export declare const encode: (node: ManuscriptNode) => Map<string, Model>;
+export declare const encode: (node: ManuscriptNode, preserveWithRepeatedID?: boolean) => Map<string, Model>;
 export {};

package/dist/types/transformer/section-category.d.ts

@@ -25,7 +25,6 @@ export declare const guessSectionCategory: (elements: Element[]) => SectionCateg
 export declare const buildSectionCategory: (node: ManuscriptNode) => SectionCategory | undefined;
 export declare const chooseJatsFnType: (footnoteType: string) => string;
 export declare const chooseSecType: (sectionCategory: SectionCategory) => SecType;
-export declare const chooseCoreSectionBySection: (section: string) => string;
 export declare const chooseSectionCategoryByType: (secType: string) => SectionCategory | undefined;
 export declare const chooseSectionCategory: (section: HTMLElement) => SectionCategory | undefined;
 export declare const chooseSectionCategoryFromTitle: (title: string | null) => SectionCategory | undefined;

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "1.5.2-LEAN-3032",
+  "version": "1.5.2-LIT-528106",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",