@manuscripts/transform 1.5.1-LEAN-2852-9 → 1.5.2-LEAN-3034

package/dist/cjs/jats/importer/parse-jats-article.js

@@ -16,7 +16,6 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.getElementsOrder = exports.parseJATSArticle = exports.parseJATSBody = exports.parseJATSReferences = exports.parseJATSFront = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 const prosemirror_model_1 = require("prosemirror-model");
 const errors_1 = require("../../errors");
 const html_1 = require("../../lib/html");
@@ -52,16 +51,9 @@ const parseJATSFront = async (front) => {
     const title = (_a = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > article-title')) === null || _a === void 0 ? void 0 : _a.innerHTML;
     const subtitle = (_b = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > subtitle')) === null || _b === void 0 ? void 0 : _b.innerHTML;
     const runningTitle = (_c = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > alt-title[alt-title-type="right-running"]')) === null || _c === void 0 ? void 0 : _c.innerHTML;
-    const manuscriptMeta = Object.assign({}, jats_front_parser_1.jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
-    const titles = {
-        objectType: json_schema_1.ObjectTypes.Titles,
-        _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.Titles),
-        title: title ? inlineContentsFromJATSTitle(title) : undefined,
-        subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined,
-        runningTitle: runningTitle
+    const manuscriptMeta = Object.assign({ title: title ? inlineContentsFromJATSTitle(title) : undefined, subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined, runningTitle: runningTitle
             ? inlineContentsFromJATSTitle(runningTitle)
-            : undefined,
-    };
+            : undefined }, jats_front_parser_1.jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
     const { affiliations, affiliationIDs } = jats_front_parser_1.jatsFrontParser.parseAffiliationNodes([
         ...front.querySelectorAll('article-meta > contrib-group > aff'),
     ]);
@@ -81,7 +73,6 @@ const parseJATSFront = async (front) => {
     const manuscript = Object.assign(Object.assign(Object.assign({}, (0, builders_1.buildManuscript)()), manuscriptMeta), history);
     return {
         models: generateModelIDs([
-            titles,
             manuscript,
             ...footnotes,
             ...correspondingList,

package/dist/cjs/jats/jats-exporter.js

@@ -23,6 +23,7 @@ const json_schema_1 = require("@manuscripts/json-schema");
 const debug_1 = __importDefault(require("debug"));
 const prosemirror_model_1 = require("prosemirror-model");
 const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
+const citationProvider_1 = require("../lib/citationProvider");
 const html_1 = require("../lib/html");
 const styled_content_1 = require("../lib/styled-content");
 const utils_1 = require("../lib/utils");
@@ -118,9 +119,16 @@ const sortContributors = (a, b) => Number(a.priority) - Number(b.priority);
 class JATSExporter {
     constructor() {
         this.serializeToJATS = async (fragment, modelMap, manuscriptID, options = {}) => {
-            const { version = '1.2', doi, id, frontMatterOnly = false, links, idGenerator, mediaPathGenerator, } = options;
+            const { version = '1.2', doi, id, frontMatterOnly = false, links, idGenerator, mediaPathGenerator, citationStyle, locale, } = options;
             this.modelMap = modelMap;
             this.models = Array.from(this.modelMap.values());
+            if (citationStyle) {
+                this.citeProcEngine = citationProvider_1.CitationProvider.getEngine({
+                    bibliographyItemsMap: this.getBibliographyItemsMap(),
+                    citationStyle: citationStyle,
+                    locale: locale,
+                });
+            }
             this.createSerializer();
             const versionIds = (0, jats_versions_1.selectVersionIds)(version);
             this.document = document.implementation.createDocument(null, 'article', document.implementation.createDocumentType('article', versionIds.publicId, versionIds.systemId));
@@ -238,7 +246,6 @@ class JATSExporter {
         this.buildFront = (doi, id, links) => {
             var _a, _b, _c, _d;
             const manuscript = (0, project_bundle_1.findManuscript)(this.modelMap);
-            const titles = (0, project_bundle_1.findTitles)(this.modelMap);
             const front = this.document.createElement('front');
             const journalMeta = this.document.createElement('journal-meta');
             front.appendChild(journalMeta);
@@ -316,20 +323,20 @@ class JATSExporter {
                     articleMeta.appendChild(link);
                 }
             }
-            if (titles.title) {
+            if (manuscript.title) {
                 const element = this.document.createElement('article-title');
-                this.setTitleContent(element, titles.title);
+                this.setTitleContent(element, manuscript.title);
                 titleGroup.appendChild(element);
             }
-            if (titles.subtitle) {
+            if (manuscript.subtitle) {
                 const element = this.document.createElement('subtitle');
-                this.setTitleContent(element, titles.subtitle);
+                this.setTitleContent(element, manuscript.subtitle);
                 titleGroup.appendChild(element);
             }
-            if (titles.runningTitle) {
+            if (manuscript.runningTitle) {
                 const element = this.document.createElement('alt-title');
                 element.setAttribute('alt-title-type', 'right-running');
-                this.setTitleContent(element, titles.runningTitle);
+                this.setTitleContent(element, manuscript.runningTitle);
                 titleGroup.appendChild(element);
             }
             const supplements = [...this.modelMap.values()].filter((model) => model.objectType === json_schema_1.ObjectTypes.Supplement);
@@ -599,7 +606,6 @@ class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
-                title: () => '',
                 affiliations_section: () => '',
                 contributors_section: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],
@@ -645,7 +651,10 @@ class JATSExporter {
                     const xref = this.document.createElement('xref');
                     xref.setAttribute('ref-type', 'bibr');
                     xref.setAttribute('rid', rids.map((item) => normalizeID(item.bibliographyItem)).join(' '));
-                    if (node.attrs.contents) {
+                    if (this.citeProcEngine) {
+                        xref.textContent = this.generateCitationContent(node);
+                    }
+                    else if (node.attrs.contents) {
                         const text = (0, html_1.textFromHTML)(node.attrs.contents);
                         if (text !== null && text.length) {
                             xref.textContent = text;
@@ -1575,6 +1584,25 @@ class JATSExporter {
             return name;
         };
     }
+    getBibliographyItemsMap() {
+        const map = new Map();
+        this.modelMap.forEach((model) => {
+            if (model.objectType === json_schema_1.ObjectTypes.BibliographyItem) {
+                map.set(model._id, model);
+            }
+        });
+        return map;
+    }
+    generateCitationContent(node) {
+        var _a;
+        const citationItems = (_a = node.attrs.embeddedCitationItems) === null || _a === void 0 ? void 0 : _a.map(({ bibliographyItem }) => ({
+            id: bibliographyItem,
+        }));
+        return this.citeProcEngine.previewCitationCluster({
+            citationID: node.attrs.rid,
+            citationItems: citationItems,
+        }, [], [], 'text');
+    }
     buildKeywords(articleMeta) {
         const keywords = [...this.modelMap.values()].filter((model) => model.objectType === json_schema_1.ObjectTypes.Keyword);
         const keywordGroups = new Map();

package/dist/cjs/lib/citationProvider.js

@@ -0,0 +1,50 @@
+"use strict";
+/*!
+ * © 2023 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.CitationProvider = void 0;
+const citeproc_1 = __importDefault(require("citeproc"));
+const defaultLocale_1 = __importDefault(require("./defaultLocale"));
+class CitationProvider {
+    constructor() {
+    }
+    static getEngine(props) {
+        if (!CitationProvider.engine) {
+            CitationProvider.engine = CitationProvider.createCiteProcEngine(props);
+        }
+        return CitationProvider.engine;
+    }
+    static createCiteProcEngine(props) {
+        const { bibliographyItemsMap, citationStyle, locale } = props;
+        return new citeproc_1.default.Engine({
+            retrieveItem: (id) => this.retrieveBibliographyItem(id, bibliographyItemsMap),
+            retrieveLocale: () => locale || defaultLocale_1.default,
+        }, citationStyle, 'en-US', false);
+    }
+    static retrieveBibliographyItem(id, map) {
+        const item = map.get(id);
+        return Object.assign(Object.assign({}, item), { id, type: (item === null || item === void 0 ? void 0 : item.type) || 'article-journal' });
+    }
+    static recreateEngine(props) {
+        CitationProvider.engine = CitationProvider.createCiteProcEngine(props);
+        return CitationProvider.engine;
+    }
+}
+exports.CitationProvider = CitationProvider;
+CitationProvider.engine = null;

package/dist/cjs/lib/defaultLocale.js

@@ -0,0 +1,3 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = '<?xml version="1.0" encoding="utf-8"?><locale xmlns="http://purl.org/net/xbiblio/csl" version="1.0" xml:lang="en-US"><info><translator><name>Andrew Dunning</name></translator><translator><name>Sebastian Karcher</name></translator><translator><name>Rintze M. Zelle</name></translator><translator><name>Denis Meier</name></translator><translator><name>Brenton M. Wiernik</name></translator><rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights><updated>2015-10-10T23:31:02+00:00</updated></info><style-options punctuation-in-quote="true"/><date form="text"><date-part name="month" suffix=" "/><date-part name="day" suffix=", "/><date-part name="year"/></date><date form="numeric"><date-part name="month" form="numeric-leading-zeros" suffix="/"/><date-part name="day" form="numeric-leading-zeros" suffix="/"/><date-part name="year"/></date><terms><term name="advance-online-publication">advance online publication</term><term name="album">album</term><term name="audio-recording">audio recording</term><term name="film">film</term><term name="henceforth">henceforth</term><term name="loc-cit">loc. cit.</term><!-- like ibid., the abbreviated form is the regular form  --><term name="no-place">no place</term><term name="no-place" form="short">n.p.</term><term name="no-publisher">no publisher</term><!-- sine nomine --><term name="no-publisher" form="short">n.p.</term><term name="on">on</term><term name="op-cit">op. cit.</term><!-- like ibid., the abbreviated form is the regular form  --><term name="original-work-published">original work published</term><term name="personal-communication">personal communication</term><term name="podcast">podcast</term><term name="podcast-episode">podcast episode</term><term name="preprint">preprint</term><term name="radio-broadcast">radio broadcast</term><term name="radio-series">radio series</term><term name="radio-series-episode">radio series episode</term><term name="special-issue">special issue</term><term name="special-section">special section</term><term name="television-broadcast">television broadcast</term><term name="television-series">television series</term><term name="television-series-episode">television series episode</term><term name="video">video</term><term name="working-paper">working paper</term><term name="accessed">accessed</term><term name="and">and</term><term name="and others">and others</term><term name="anonymous">anonymous</term><term name="anonymous" form="short">anon.</term><term name="at">at</term><term name="available at">available at</term><term name="by">by</term><term name="circa">circa</term><term name="circa" form="short">c.</term><term name="cited">cited</term><term name="edition"><single>edition</single><multiple>editions</multiple></term><term name="edition" form="short">ed.</term><term name="et-al">et al.</term><term name="forthcoming">forthcoming</term><term name="from">from</term><term name="ibid">ibid.</term><term name="in">in</term><term name="in press">in press</term><term name="internet">internet</term><term name="letter">letter</term><term name="no date">no date</term><term name="no date" form="short">n.d.</term><term name="online">online</term><term name="presented at">presented at the</term><term name="reference"><single>reference</single><multiple>references</multiple></term><term name="reference" form="short"><single>ref.</single><multiple>refs.</multiple></term><term name="retrieved">retrieved</term><term name="scale">scale</term><term name="version">version</term><!-- LONG ITEM TYPE FORMS --><term name="article">preprint</term><term name="article-journal">journal article</term><term name="article-magazine">magazine article</term><term name="article-newspaper">newspaper article</term><term name="bill">bill</term><!-- book is in the list of locator terms --><term name="broadcast">broadcast</term><!-- chapter is in the list of locator terms --><term name="classic">classic</term><term name="collection">collection</term><term name="dataset">dataset</term><term name="document">document</term><term name="entry">entry</term><term name="entry-dictionary">dictionary entry</term><term name="entry-encyclopedia">encyclopedia entry</term><term name="event">event</term><!-- figure is in the list of locator terms --><term name="graphic">graphic</term><term name="hearing">hearing</term><term name="interview">interview</term><term name="legal_case">legal case</term><term name="legislation">legislation</term><term name="manuscript">manuscript</term><term name="map">map</term><term name="motion_picture">video recording</term><term name="musical_score">musical score</term><term name="pamphlet">pamphlet</term><term name="paper-conference">conference paper</term><term name="patent">patent</term><term name="performance">performance</term><term name="periodical">periodical</term><term name="personal_communication">personal communication</term><term name="post">post</term><term name="post-weblog">blog post</term><term name="regulation">regulation</term><term name="report">report</term><term name="review">review</term><term name="review-book">book review</term><term name="software">software</term><term name="song">audio recording</term><term name="speech">presentation</term><term name="standard">standard</term><term name="thesis">thesis</term><term name="treaty">treaty</term><term name="webpage">webpage</term><!-- SHORT ITEM TYPE FORMS --><term name="article-journal" form="short">journal art.</term><term name="article-magazine" form="short">mag. art.</term><term name="article-newspaper" form="short">newspaper art.</term><!-- book is in the list of locator terms --><!-- chapter is in the list of locator terms --><term name="document" form="short">doc.</term><!-- figure is in the list of locator terms --><term name="graphic" form="short">graph.</term><term name="interview" form="short">interv.</term><term name="manuscript" form="short">MS</term><term name="motion_picture" form="short">video rec.</term><term name="report" form="short">rep.</term><term name="review" form="short">rev.</term><term name="review-book" form="short">bk. rev.</term><term name="song" form="short">audio rec.</term><!-- HISTORICAL ERA TERMS --><term name="ad">AD</term><term name="bc">BC</term><term name="bce">BCE</term><term name="ce">CE</term><!-- PUNCTUATION --><term name="open-quote">“</term><term name="close-quote">”</term><term name="open-inner-quote">‘</term><term name="close-inner-quote">’</term><term name="page-range-delimiter">–</term><term name="colon">:</term><term name="comma">,</term><term name="semicolon">;</term><!-- ORDINALS --><term name="ordinal">th</term><term name="ordinal-01">st</term><term name="ordinal-02">nd</term><term name="ordinal-03">rd</term><term name="ordinal-11">th</term><term name="ordinal-12">th</term><term name="ordinal-13">th</term><!-- LONG ORDINALS --><term name="long-ordinal-01">first</term><term name="long-ordinal-02">second</term><term name="long-ordinal-03">third</term><term name="long-ordinal-04">fourth</term><term name="long-ordinal-05">fifth</term><term name="long-ordinal-06">sixth</term><term name="long-ordinal-07">seventh</term><term name="long-ordinal-08">eighth</term><term name="long-ordinal-09">ninth</term><term name="long-ordinal-10">tenth</term><!-- LONG LOCATOR FORMS --><term name="act"><single>act</single><multiple>acts</multiple></term><term name="appendix"><single>appendix</single><multiple>appendices</multiple></term><term name="article-locator"><single>article</single><multiple>articles</multiple></term><term name="canon"><single>canon</single><multiple>canons</multiple></term><term name="elocation"><single>location</single><multiple>locations</multiple></term><term name="equation"><single>equation</single><multiple>equations</multiple></term><term name="rule"><single>rule</single><multiple>rules</multiple></term><term name="scene"><single>scene</single><multiple>scenes</multiple></term><term name="table"><single>table</single><multiple>tables</multiple></term><term name="timestamp"><!-- generally blank --><single></single><multiple></multiple></term><term name="title-locator"><single>title</single><multiple>titles</multiple></term><term name="book"><single>book</single><multiple>books</multiple></term><term name="chapter"><single>chapter</single><multiple>chapters</multiple></term><term name="column"><single>column</single><multiple>columns</multiple></term><term name="figure"><single>figure</single><multiple>figures</multiple></term><term name="folio"><single>folio</single><multiple>folios</multiple></term><term name="issue"><single>number</single><multiple>numbers</multiple></term><term name="line"><single>line</single><multiple>lines</multiple></term><term name="note"><single>note</single><multiple>notes</multiple></term><term name="opus"><single>opus</single><multiple>opera</multiple></term><term name="page"><single>page</single><multiple>pages</multiple></term><term name="number-of-pages"><single>page</single><multiple>pages</multiple></term><term name="paragraph"><single>paragraph</single><multiple>paragraphs</multiple></term><term name="part"><single>part</single><multiple>parts</multiple></term><term name="section"><single>section</single><multiple>sections</multiple></term><term name="sub-verbo"><single>sub verbo</single><multiple>sub verbis</multiple></term><term name="verse"><single>verse</single><multiple>verses</multiple></term><term name="volume"><single>volume</single><multiple>volumes</multiple></term><!-- SHORT LOCATOR FORMS --><term name="appendix" form="short"><single>app.</single><multiple>apps.</multiple></term><term name="article-locator" form="short"><single>art.</single><multiple>arts.</multiple></term><term name="elocation" form="short"><single>loc.</single><multiple>locs.</multiple></term><term name="equation" form="short"><single>eq.</single><multiple>eqs.</multiple></term><term name="rule" form="short"><single>r.</single><multiple>rr.</multiple></term><term name="scene" form="short"><single>sc.</single><multiple>scs.</multiple></term><term name="table" form="short"><single>tbl.</single><multiple>tbls.</multiple></term><term name="timestamp" form="short"><!-- generally blank --><single></single><multiple></multiple></term><term name="title-locator" form="short"><single>tit.</single><multiple>tits.</multiple></term><term name="book" form="short"><single>bk.</single><multiple>bks.</multiple></term><term name="chapter" form="short"><single>chap.</single><multiple>chaps.</multiple></term><term name="column" form="short"><single>col.</single><multiple>cols.</multiple></term><term name="figure" form="short"><single>fig.</single><multiple>figs.</multiple></term><term name="folio" form="short"><single>fol.</single><multiple>fols.</multiple></term><term name="issue" form="short"><single>no.</single><multiple>nos.</multiple></term><term name="line" form="short"><single>l.</single><multiple>ll.</multiple></term><term name="note" form="short"><single>n.</single><multiple>nn.</multiple></term><term name="opus" form="short"><single>op.</single><multiple>opp.</multiple></term><term name="page" form="short"><single>p.</single><multiple>pp.</multiple></term><term name="number-of-pages" form="short"><single>p.</single><multiple>pp.</multiple></term><term name="paragraph" form="short"><single>para.</single><multiple>paras.</multiple></term><term name="part" form="short"><single>pt.</single><multiple>pts.</multiple></term><term name="section" form="short"><single>sec.</single><multiple>secs.</multiple></term><term name="sub-verbo" form="short"><single>s.v.</single><multiple>s.vv.</multiple></term><term name="verse" form="short"><single>v.</single><multiple>vv.</multiple></term><term name="volume" form="short"><single>vol.</single><multiple>vols.</multiple></term><!-- SYMBOL LOCATOR FORMS --><term name="paragraph" form="symbol"><single>¶</single><multiple>¶¶</multiple></term><term name="section" form="symbol"><single>§</single><multiple>§§</multiple></term><!-- LONG ROLE FORMS --><term name="chair"><single>chair</single><multiple>chairs</multiple></term><term name="compiler"><single>compiler</single><multiple>compilers</multiple></term><term name="contributor"><single>contributor</single><multiple>contributors</multiple></term><term name="curator"><single>curator</single><multiple>curators</multiple></term><term name="executive-producer"><single>executive producer</single><multiple>executive producers</multiple></term><term name="guest"><single>guest</single><multiple>guests</multiple></term><term name="host"><single>host</single><multiple>hosts</multiple></term><term name="narrator"><single>narrator</single><multiple>narrators</multiple></term><term name="organizer"><single>organizer</single><multiple>organizers</multiple></term><term name="performer"><single>performer</single><multiple>performers</multiple></term><term name="producer"><single>producer</single><multiple>producers</multiple></term><term name="script-writer"><single>writer</single><multiple>writers</multiple></term><term name="series-creator"><single>series creator</single><multiple>series creators</multiple></term><term name="director"><single>director</single><multiple>directors</multiple></term><term name="editor"><single>editor</single><multiple>editors</multiple></term><term name="editorial-director"><single>editor</single><multiple>editors</multiple></term><term name="illustrator"><single>illustrator</single><multiple>illustrators</multiple></term><term name="translator"><single>translator</single><multiple>translators</multiple></term><term name="editortranslator"><single>editor &amp; translator</single><multiple>editors &amp; translators</multiple></term><!-- SHORT ROLE FORMS --><term name="compiler" form="short"><single>comp.</single><multiple>comps.</multiple></term><term name="contributor" form="short"><single>contrib.</single><multiple>contribs.</multiple></term><term name="curator" form="short"><single>cur.</single><multiple>curs.</multiple></term><term name="executive-producer" form="short"><single>exec. prod.</single><multiple>exec. prods.</multiple></term><term name="narrator" form="short"><single>narr.</single><multiple>narrs.</multiple></term><term name="organizer" form="short"><single>org.</single><multiple>orgs.</multiple></term><term name="performer" form="short"><single>perf.</single><multiple>perfs.</multiple></term><term name="producer" form="short"><single>prod.</single><multiple>prods.</multiple></term><term name="script-writer" form="short"><single>writ.</single><multiple>writs.</multiple></term><term name="series-creator" form="short"><single>cre.</single><multiple>cres.</multiple></term><term name="director" form="short"><single>dir.</single><multiple>dirs.</multiple></term><term name="editor" form="short"><single>ed.</single><multiple>eds.</multiple></term><term name="editorial-director" form="short"><single>ed.</single><multiple>eds.</multiple></term><term name="illustrator" form="short"><single>ill.</single><multiple>ills.</multiple></term><term name="translator" form="short"><single>tran.</single><multiple>trans.</multiple></term><term name="editortranslator" form="short"><single>ed. &amp; tran.</single><multiple>eds. &amp; trans.</multiple></term><!-- VERB ROLE FORMS --><term name="chair" form="verb">chaired by</term><term name="compiler" form="verb">compiled by</term><term name="contributor" form="verb">with</term><term name="curator" form="verb">curated by</term><term name="executive-producer" form="verb">executive produced by</term><term name="guest" form="verb">with guest</term><term name="host" form="verb">hosted by</term><term name="narrator" form="verb">narrated by</term><term name="organizer" form="verb">organized by</term><term name="performer" form="verb">performed by</term><term name="producer" form="verb">produced by</term><term name="script-writer" form="verb">written by</term><term name="series-creator" form="verb">created by</term><term name="container-author" form="verb">by</term><term name="director" form="verb">directed by</term><term name="editor" form="verb">edited by</term><term name="editorial-director" form="verb">edited by</term><term name="illustrator" form="verb">illustrated by</term><term name="interviewer" form="verb">interview by</term><term name="recipient" form="verb">to</term><term name="reviewed-author" form="verb">by</term><term name="translator" form="verb">translated by</term><term name="editortranslator" form="verb">edited &amp; translated by</term><!-- SHORT VERB ROLE FORMS --><term name="compiler" form="verb-short">comp. by</term><term name="contributor" form="verb-short">w.</term><term name="curator" form="verb-short">cur. by</term><term name="executive-producer" form="verb-short">exec. prod. by</term><term name="guest" form="verb-short">w. guest</term><term name="host" form="verb-short">hosted by</term><term name="narrator" form="verb-short">narr. by</term><term name="organizer" form="verb-short">org. by</term><term name="performer" form="verb-short">perf. by</term><term name="producer" form="verb-short">prod. by</term><term name="script-writer" form="verb-short">writ. by</term><term name="series-creator" form="verb-short">cre. by</term><term name="director" form="verb-short">dir. by</term><term name="editor" form="verb-short">ed. by</term><term name="editorial-director" form="verb-short">ed. by</term><term name="illustrator" form="verb-short">illus. by</term><term name="translator" form="verb-short">trans. by</term><term name="editortranslator" form="verb-short">ed. &amp; trans. by</term><!-- LONG MONTH FORMS --><term name="month-01">January</term><term name="month-02">February</term><term name="month-03">March</term><term name="month-04">April</term><term name="month-05">May</term><term name="month-06">June</term><term name="month-07">July</term><term name="month-08">August</term><term name="month-09">September</term><term name="month-10">October</term><term name="month-11">November</term><term name="month-12">December</term><!-- SHORT MONTH FORMS --><term name="month-01" form="short">Jan.</term><term name="month-02" form="short">Feb.</term><term name="month-03" form="short">Mar.</term><term name="month-04" form="short">Apr.</term><term name="month-05" form="short">May</term><term name="month-06" form="short">Jun.</term><term name="month-07" form="short">Jul.</term><term name="month-08" form="short">Aug.</term><term name="month-09" form="short">Sep.</term><term name="month-10" form="short">Oct.</term><term name="month-11" form="short">Nov.</term><term name="month-12" form="short">Dec.</term><!-- SEASONS --><term name="season-01">Spring</term><term name="season-02">Summer</term><term name="season-03">Autumn</term><term name="season-04">Winter</term></terms></locale>';

package/dist/cjs/schema/index.js

@@ -85,7 +85,6 @@ const table_element_1 = require("./nodes/table_element");
 const table_element_footer_1 = require("./nodes/table_element_footer");
 const table_row_1 = require("./nodes/table_row");
 const text_1 = require("./nodes/text");
-const title_1 = require("./nodes/title");
 const toc_element_1 = require("./nodes/toc_element");
 const toc_section_1 = require("./nodes/toc_section");
 __exportStar(require("./groups"), exports);
@@ -141,7 +140,6 @@ __exportStar(require("./nodes/affiliation"), exports);
 __exportStar(require("./nodes/meta_section"), exports);
 __exportStar(require("./nodes/contributor"), exports);
 __exportStar(require("./nodes/table_element_footer"), exports);
-__exportStar(require("./nodes/title"), exports);
 __exportStar(require("./nodes/affiliations_section"), exports);
 __exportStar(require("./nodes/contributors_section"), exports);
 exports.schema = new prosemirror_model_1.Schema({
@@ -218,7 +216,6 @@ exports.schema = new prosemirror_model_1.Schema({
         meta_section: meta_section_1.metaSection,
         contributor: contributor_1.contributor,
         table_element_footer: table_element_footer_1.tableElementFooter,
-        title: title_1.title,
         affiliations_section: affiliations_section_1.affiliationsSection,
         contributors_section: contributors_section_1.contributorsSection,
     },

package/dist/cjs/schema/nodes/manuscript.js

@@ -17,7 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.manuscript = void 0;
 exports.manuscript = {
-    content: 'title* (section | sections)+ meta_section',
+    content: '(section | sections)+ meta_section',
     attrs: {
         id: { default: '' },
     },

package/dist/cjs/transformer/builders.js

@@ -18,7 +18,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.buildTitles = exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildStatusLabel = exports.buildJournal = exports.buildAttribution = exports.buildInlineStyle = exports.buildContributorRole = exports.buildContribution = exports.buildHighlightMarker = exports.buildHighlight = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildInlineMathFragment = exports.buildValidation = exports.buildNote = exports.buildComment = exports.buildUserProfileAffiliation = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildLibraryCollection = exports.buildManuscriptKeyword = exports.buildKeywordGroup = exports.buildKeyword = exports.buildCitation = exports.buildEmbeddedCitationItem = exports.buildAuxiliaryObjectReference = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = exports.DEFAULT_PAGE_LAYOUT = exports.DEFAULT_BUNDLE = void 0;
+exports.buildElementsOrder = exports.auxiliaryObjectTypes = exports.buildStatusLabel = exports.buildJournal = exports.buildAttribution = exports.buildInlineStyle = exports.buildContributorRole = exports.buildContribution = exports.buildHighlightMarker = exports.buildHighlight = exports.buildColor = exports.buildParagraph = exports.buildSection = exports.buildCorresp = exports.buildFootnotesOrder = exports.buildFootnote = exports.buildInlineMathFragment = exports.buildValidation = exports.buildNote = exports.buildComment = exports.buildUserProfileAffiliation = exports.buildSupplementaryMaterial = exports.buildAffiliation = exports.buildFigure = exports.buildLibraryCollection = exports.buildManuscriptKeyword = exports.buildKeywordGroup = exports.buildKeyword = exports.buildCitation = exports.buildEmbeddedCitationItem = exports.buildAuxiliaryObjectReference = exports.buildBibliographicDate = exports.buildBibliographicName = exports.buildBibliographyItem = exports.buildContributor = exports.buildManuscript = exports.buildProject = exports.DEFAULT_PAGE_LAYOUT = exports.DEFAULT_BUNDLE = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
 const schema_1 = require("../schema");
@@ -35,9 +35,10 @@ const buildProject = (owner) => ({
     title: '',
 });
 exports.buildProject = buildProject;
-const buildManuscript = () => ({
+const buildManuscript = (title = '') => ({
     _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.Manuscript),
     objectType: json_schema_1.ObjectTypes.Manuscript,
+    title,
 });
 exports.buildManuscript = buildManuscript;
 const buildContributor = (bibliographicName, role = 'author', priority = 0, userID, invitationID) => ({
@@ -290,9 +291,3 @@ const buildElementsOrder = (elementType) => ({
     elements: [],
 });
 exports.buildElementsOrder = buildElementsOrder;
-const buildTitles = (title) => ({
-    _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.Titles),
-    objectType: json_schema_1.ObjectTypes.Titles,
-    title: title || '',
-});
-exports.buildTitles = buildTitles;

package/dist/cjs/transformer/decode.js

@@ -35,7 +35,6 @@ const debug_1 = __importDefault(require("debug"));
 const prosemirror_model_1 = require("prosemirror-model");
 const errors_1 = require("../errors");
 const schema_1 = require("../schema");
-const builders_1 = require("./builders");
 const highlight_markers_1 = require("./highlight-markers");
 const id_1 = require("./id");
 const object_types_1 = require("./object-types");
@@ -116,11 +115,6 @@ class Decoder {
             rootSectionNodes.unshift(node);
         }
     }
-    createTitleNode() {
-        const titles = (0, exports.getModelsByType)(this.modelMap, json_schema_1.ObjectTypes.Titles)[0] ||
-            (0, builders_1.buildTitles)();
-        return this.decode(titles);
-    }
     createRootSectionNodes() {
         let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
         rootSections = this.addGeneratedLabels(rootSections);
@@ -153,14 +147,6 @@ class Decoder {
     constructor(modelMap, allowMissingElements = false) {
         this.comments = new Map();
         this.creators = {
-            [json_schema_1.ObjectTypes.Titles]: (data) => {
-                const model = data;
-                return this.parseContents(model.title, 'div', undefined, {
-                    topNode: schema_1.schema.nodes.title.create({
-                        id: model._id,
-                    }),
-                });
-            },
             [json_schema_1.ObjectTypes.BibliographyElement]: (data) => {
                 var _a;
                 const model = data;
@@ -645,14 +631,9 @@ class Decoder {
         };
         this.getModel = (id) => this.modelMap.get(id);
         this.createArticleNode = (manuscriptID) => {
-            const titlesNode = this.createTitleNode();
             const rootSectionNodes = this.createRootSectionNodes();
             const metaSectionNode = this.createMetaSectionNode();
-            const contents = [
-                titlesNode,
-                ...rootSectionNodes,
-                metaSectionNode,
-            ];
+            const contents = [...rootSectionNodes, metaSectionNode];
             return schema_1.schema.nodes.manuscript.create({
                 id: manuscriptID || this.getManuscriptID(),
             }, contents);

package/dist/cjs/transformer/encode.js

@@ -263,12 +263,6 @@ function figureElementEncoder(node) {
     };
 }
 const encoders = {
-    title: (node) => ({
-        title: node.attrs.title,
-        subtitle: node.attrs.subtitle,
-        runningTitle: node.attrs.runningTitle,
-        _id: node.attrs._id,
-    }),
     bibliography_element: (node) => ({
         elementType: 'div',
         contents: '',

package/dist/cjs/transformer/html.js

@@ -152,7 +152,6 @@ class HTMLTransformer {
         this.buildFront = () => {
             const manuscript = (0, project_bundle_1.findManuscript)(this.modelMap);
             const journal = (0, project_bundle_1.findJournal)(this.modelMap);
-            const titles = (0, project_bundle_1.findTitles)(this.modelMap);
             if (!manuscript) {
                 throw new Error('Manuscript not found in project modelMap');
             }
@@ -171,14 +170,14 @@ class HTMLTransformer {
             }
             const articleMeta = this.document.createElement('div');
             front.appendChild(articleMeta);
-            const title = this.document.createElement('h1');
-            if (titles.title) {
-                title.innerHTML = titles.title;
+            const articleTitle = this.document.createElement('h1');
+            if (manuscript.title) {
+                articleTitle.innerHTML = manuscript.title;
             }
             if (journal === null || journal === void 0 ? void 0 : journal.title) {
-                title.setAttribute('data-journal', journal.title);
+                articleTitle.setAttribute('data-journal', journal.title);
             }
-            articleMeta.appendChild(title);
+            articleMeta.appendChild(articleTitle);
             if (manuscript.DOI) {
                 const articleID = this.document.createElement('article-id');
                 articleID.setAttribute('pub-id-type', 'doi');

package/dist/cjs/transformer/labels.js

@@ -56,10 +56,14 @@ const buildTargets = (fragment, manuscript) => {
     const targets = new Map();
     const figures = [];
     fragment.forEach((node) => {
-        if (node.type === node.type.schema.nodes.graphical_abstract_section) {
-            node.forEach((item) => {
-                if (item.type === node.type.schema.nodes.figure_element) {
-                    figures.push(item.attrs.id);
+        if (node.attrs.category === 'MPSectionCategory:abstracts') {
+            node.forEach((child) => {
+                if (child.type === node.type.schema.nodes.graphical_abstract_section) {
+                    child.forEach((item) => {
+                        if (item.type === node.type.schema.nodes.figure_element) {
+                            figures.push(item.attrs.id);
+                        }
+                    });
                 }
             });
         }

package/dist/cjs/transformer/node-title.js

@@ -32,7 +32,7 @@ const textSnippet = (node, max = 100) => {
             text += ' ';
         }
     });
-    return text.substring(0, max);
+    return text.substr(0, max);
 };
 const snippetOfNodeType = (node, nodeType) => {
     for (const child of (0, utils_1.iterateChildren)(node, true)) {
@@ -43,10 +43,8 @@ const snippetOfNodeType = (node, nodeType) => {
     return null;
 };
 const nodeTitle = (node) => {
-    const nodes = schema_1.schema.nodes;
+    const nodes = node.type.schema.nodes;
     switch (node.type) {
-        case nodes.manuscript:
-            return snippetOfNodeType(node, nodes.title);
         case nodes.section:
         case nodes.bibliography_section:
         case nodes.footnotes_section:
@@ -74,9 +72,9 @@ const nodeTitle = (node) => {
 };
 exports.nodeTitle = nodeTitle;
 const nodeTitlePlaceholder = (nodeType) => {
-    const nodes = schema_1.schema.nodes;
+    const nodes = nodeType.schema.nodes;
     switch (nodeType) {
-        case nodes.manuscript:
+        case nodes.title:
             return 'Untitled Manuscript';
         case nodes.section:
             return 'Untitled Section';

package/dist/cjs/transformer/node-types.js

@@ -57,7 +57,6 @@ exports.nodeTypesMap = new Map([
     [schema_1.schema.nodes.affiliation, json_schema_1.ObjectTypes.Affiliation],
     [schema_1.schema.nodes.contributor, json_schema_1.ObjectTypes.Contributor],
     [schema_1.schema.nodes.table_element_footer, json_schema_1.ObjectTypes.TableElementFooter],
-    [schema_1.schema.nodes.title, json_schema_1.ObjectTypes.Titles],
     [schema_1.schema.nodes.contributors_section, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.affiliations_section, json_schema_1.ObjectTypes.Section],
 ]);

package/dist/cjs/transformer/project-bundle.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.findTitles = exports.findManuscriptById = exports.findManuscriptModelByType = exports.findJournal = exports.findManuscript = exports.parseProjectBundle = void 0;
+exports.findManuscriptById = exports.findManuscriptModelByType = exports.findJournal = exports.findManuscript = exports.parseProjectBundle = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const decode_1 = require("./decode");
 const object_types_1 = require("./object-types");
@@ -71,24 +71,3 @@ const findManuscriptById = (modelMap, manuscriptID) => {
     throw new Error(`There is no manuscript found for the following _id (${manuscriptID})`);
 };
 exports.findManuscriptById = findManuscriptById;
-const isTitle = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Titles);
-const findTitles = (modelMap) => {
-    for (const model of modelMap.values()) {
-        if (isTitle(model)) {
-            return model;
-        }
-    }
-    const defaultTitle = {
-        _id: 'MPTitles:8EB79C14-9F61-483A-902F-A0B8EF5973C1',
-        createdAt: 1538472121.690101,
-        updatedAt: 1538472121.690101,
-        objectType: 'MPTitles',
-        title: 'main title',
-        subtitle: 'subtitle',
-        runningTitle: 'running title',
-        manuscriptID: 'MPManuscript:E3830344-E77B-42BA-BD77-3E95489712A0',
-        containerID: 'MPProject:1',
-    };
-    return defaultTitle;
-};
-exports.findTitles = findTitles;

package/dist/es/jats/importer/parse-jats-article.js

@@ -13,7 +13,6 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-import { ObjectTypes, } from '@manuscripts/json-schema';
 import { DOMParser } from 'prosemirror-model';
 import { InvalidInput } from '../../errors';
 import { nodeFromHTML } from '../../lib/html';
@@ -49,16 +48,9 @@ export const parseJATSFront = async (front) => {
     const title = (_a = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > article-title')) === null || _a === void 0 ? void 0 : _a.innerHTML;
     const subtitle = (_b = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > subtitle')) === null || _b === void 0 ? void 0 : _b.innerHTML;
     const runningTitle = (_c = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > alt-title[alt-title-type="right-running"]')) === null || _c === void 0 ? void 0 : _c.innerHTML;
-    const manuscriptMeta = Object.assign({}, jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
-    const titles = {
-        objectType: ObjectTypes.Titles,
-        _id: generateID(ObjectTypes.Titles),
-        title: title ? inlineContentsFromJATSTitle(title) : undefined,
-        subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined,
-        runningTitle: runningTitle
+    const manuscriptMeta = Object.assign({ title: title ? inlineContentsFromJATSTitle(title) : undefined, subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined, runningTitle: runningTitle
             ? inlineContentsFromJATSTitle(runningTitle)
-            : undefined,
-    };
+            : undefined }, jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
     const { affiliations, affiliationIDs } = jatsFrontParser.parseAffiliationNodes([
         ...front.querySelectorAll('article-meta > contrib-group > aff'),
     ]);
@@ -78,7 +70,6 @@ export const parseJATSFront = async (front) => {
     const manuscript = Object.assign(Object.assign(Object.assign({}, buildManuscript()), manuscriptMeta), history);
     return {
         models: generateModelIDs([
-            titles,
             manuscript,
             ...footnotes,
             ...correspondingList,