@manuscripts/transform 1.5.0-LEAN-2852-9 → 1.5.0-LIT-528106

package/dist/cjs/jats/importer/parse-jats-article.js

@@ -16,7 +16,6 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.getElementsOrder = exports.parseJATSArticle = exports.parseJATSBody = exports.parseJATSReferences = exports.parseJATSFront = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 const prosemirror_model_1 = require("prosemirror-model");
 const errors_1 = require("../../errors");
 const html_1 = require("../../lib/html");
@@ -52,16 +51,9 @@ const parseJATSFront = async (front) => {
     const title = (_a = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > article-title')) === null || _a === void 0 ? void 0 : _a.innerHTML;
     const subtitle = (_b = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > subtitle')) === null || _b === void 0 ? void 0 : _b.innerHTML;
     const runningTitle = (_c = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > alt-title[alt-title-type="right-running"]')) === null || _c === void 0 ? void 0 : _c.innerHTML;
-    const manuscriptMeta = Object.assign({}, jats_front_parser_1.jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
-    const titles = {
-        objectType: json_schema_1.ObjectTypes.Titles,
-        _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.Titles),
-        title: title ? inlineContentsFromJATSTitle(title) : undefined,
-        subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined,
-        runningTitle: runningTitle
+    const manuscriptMeta = Object.assign({ title: title ? inlineContentsFromJATSTitle(title) : undefined, subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined, runningTitle: runningTitle
             ? inlineContentsFromJATSTitle(runningTitle)
-            : undefined,
-    };
+            : undefined }, jats_front_parser_1.jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
     const { affiliations, affiliationIDs } = jats_front_parser_1.jatsFrontParser.parseAffiliationNodes([
         ...front.querySelectorAll('article-meta > contrib-group > aff'),
     ]);
@@ -81,7 +73,6 @@ const parseJATSFront = async (front) => {
     const manuscript = Object.assign(Object.assign(Object.assign({}, (0, builders_1.buildManuscript)()), manuscriptMeta), history);
     return {
         models: generateModelIDs([
-            titles,
             manuscript,
             ...footnotes,
             ...correspondingList,

package/dist/cjs/jats/jats-exporter.js

@@ -238,7 +238,6 @@ class JATSExporter {
         this.buildFront = (doi, id, links) => {
             var _a, _b, _c, _d;
             const manuscript = (0, project_bundle_1.findManuscript)(this.modelMap);
-            const titles = (0, project_bundle_1.findTitles)(this.modelMap);
             const front = this.document.createElement('front');
             const journalMeta = this.document.createElement('journal-meta');
             front.appendChild(journalMeta);
@@ -316,20 +315,20 @@ class JATSExporter {
                     articleMeta.appendChild(link);
                 }
             }
-            if (titles.title) {
+            if (manuscript.title) {
                 const element = this.document.createElement('article-title');
-                this.setTitleContent(element, titles.title);
+                this.setTitleContent(element, manuscript.title);
                 titleGroup.appendChild(element);
             }
-            if (titles.subtitle) {
+            if (manuscript.subtitle) {
                 const element = this.document.createElement('subtitle');
-                this.setTitleContent(element, titles.subtitle);
+                this.setTitleContent(element, manuscript.subtitle);
                 titleGroup.appendChild(element);
             }
-            if (titles.runningTitle) {
+            if (manuscript.runningTitle) {
                 const element = this.document.createElement('alt-title');
                 element.setAttribute('alt-title-type', 'right-running');
-                this.setTitleContent(element, titles.runningTitle);
+                this.setTitleContent(element, manuscript.runningTitle);
                 titleGroup.appendChild(element);
             }
             const supplements = [...this.modelMap.values()].filter((model) => model.objectType === json_schema_1.ObjectTypes.Supplement);
@@ -599,7 +598,6 @@ class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
-                titles: () => '',
                 affiliations_section: () => '',
                 contributors_section: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],

package/dist/cjs/lib/utils.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
+exports.modelsEqual = exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
 const bibliography_section_1 = require("../schema/nodes/bibliography_section");
 const graphical_abstract_section_1 = require("../schema/nodes/graphical_abstract_section");
 function* iterateChildren(node, recurse = false) {
@@ -94,3 +94,16 @@ const getTrimmedTextContent = (node, querySelector) => {
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
 exports.getTrimmedTextContent = getTrimmedTextContent;
+function modelsEqual(model, model2) {
+    for (const v in model) {
+        for (const v2 in model2) {
+            const prepV = typeof v == 'object' ? JSON.stringify(v) : v;
+            const prepV2 = typeof v2 == 'object' ? JSON.stringify(v2) : v2;
+            if (prepV !== prepV2) {
+                return false;
+            }
+        }
+    }
+    return true;
+}
+exports.modelsEqual = modelsEqual;

package/dist/cjs/schema/index.js

@@ -85,7 +85,6 @@ const table_element_1 = require("./nodes/table_element");
 const table_element_footer_1 = require("./nodes/table_element_footer");
 const table_row_1 = require("./nodes/table_row");
 const text_1 = require("./nodes/text");
-const titles_1 = require("./nodes/titles");
 const toc_element_1 = require("./nodes/toc_element");
 const toc_section_1 = require("./nodes/toc_section");
 __exportStar(require("./groups"), exports);
@@ -141,7 +140,6 @@ __exportStar(require("./nodes/affiliation"), exports);
 __exportStar(require("./nodes/meta_section"), exports);
 __exportStar(require("./nodes/contributor"), exports);
 __exportStar(require("./nodes/table_element_footer"), exports);
-__exportStar(require("./nodes/titles"), exports);
 __exportStar(require("./nodes/affiliations_section"), exports);
 __exportStar(require("./nodes/contributors_section"), exports);
 exports.schema = new prosemirror_model_1.Schema({
@@ -218,7 +216,6 @@ exports.schema = new prosemirror_model_1.Schema({
         meta_section: meta_section_1.metaSection,
         contributor: contributor_1.contributor,
         table_element_footer: table_element_footer_1.tableElementFooter,
-        titles: titles_1.Titles,
         affiliations_section: affiliations_section_1.affiliationsSection,
         contributors_section: contributors_section_1.contributorsSection,
     },

package/dist/cjs/transformer/builders.js

@@ -35,9 +35,10 @@ const buildProject = (owner) => ({
     title: '',
 });
 exports.buildProject = buildProject;
-const buildManuscript = () => ({
+const buildManuscript = (title = '') => ({
     _id: (0, id_1.generateID)(json_schema_1.ObjectTypes.Manuscript),
     objectType: json_schema_1.ObjectTypes.Manuscript,
+    title,
 });
 exports.buildManuscript = buildManuscript;
 const buildContributor = (bibliographicName, role = 'author', priority = 0, userID, invitationID) => ({

package/dist/cjs/transformer/decode.js

@@ -115,16 +115,6 @@ class Decoder {
             rootSectionNodes.unshift(node);
         }
     }
-    createTitlesNode() {
-        const titlesModel = (0, exports.getModelsByType)(this.modelMap, json_schema_1.ObjectTypes.Titles)[0];
-        if (titlesModel) {
-            const titlesNode = this.decode(titlesModel);
-            return titlesNode;
-        }
-        else {
-            return null;
-        }
-    }
     createRootSectionNodes() {
         let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
         rootSections = this.addGeneratedLabels(rootSections);
@@ -157,15 +147,6 @@ class Decoder {
     constructor(modelMap, allowMissingElements = false) {
         this.comments = new Map();
         this.creators = {
-            [json_schema_1.ObjectTypes.Titles]: (data) => {
-                const model = data;
-                return schema_1.schema.nodes.titles.create({
-                    id: model._id,
-                    title: model.title,
-                    subtitle: model.subtitle,
-                    runningTitle: model.runningTitle,
-                });
-            },
             [json_schema_1.ObjectTypes.BibliographyElement]: (data) => {
                 var _a;
                 const model = data;
@@ -650,13 +631,9 @@ class Decoder {
         };
         this.getModel = (id) => this.modelMap.get(id);
         this.createArticleNode = (manuscriptID) => {
-            const titlesNode = this.createTitlesNode();
             const rootSectionNodes = this.createRootSectionNodes();
             const metaSectionNode = this.createMetaSectionNode();
             const contents = [...rootSectionNodes, metaSectionNode];
-            if (titlesNode) {
-                contents.push(titlesNode);
-            }
             return schema_1.schema.nodes.manuscript.create({
                 id: manuscriptID || this.getManuscriptID(),
             }, contents);

package/dist/cjs/transformer/encode.js

@@ -25,6 +25,7 @@ const utils_1 = require("../lib/utils");
 const schema_1 = require("../schema");
 const builders_1 = require("./builders");
 const highlight_markers_1 = require("./highlight-markers");
+const id_1 = require("./id");
 const node_types_1 = require("./node-types");
 const section_category_1 = require("./section-category");
 const serializer = prosemirror_model_1.DOMSerializer.fromSchema(schema_1.schema);
@@ -263,12 +264,6 @@ function figureElementEncoder(node) {
     };
 }
 const encoders = {
-    titles: (node) => ({
-        title: node.attrs.title,
-        subtitle: node.attrs.subtitle,
-        runningTitle: node.attrs.runningTitle,
-        _id: node.attrs._id,
-    }),
     bibliography_element: (node) => ({
         elementType: 'div',
         contents: '',
@@ -576,7 +571,7 @@ const modelFromNode = (node, parent, path, priority) => {
     return { model, commentAnnotationsMap };
 };
 exports.modelFromNode = modelFromNode;
-const encode = (node) => {
+const encode = (node, preserveWithRepeatedID = false) => {
     const models = new Map();
     const priority = {
         value: 1,
@@ -596,8 +591,14 @@ const encode = (node) => {
             return;
         }
         const { model } = (0, exports.modelFromNode)(child, parent, path, priority);
-        if (models.has(model._id)) {
-            throw Error(`Encountered duplicate ids in models map while encoding: ${model._id}`);
+        const existingModel = models.get(model._id);
+        if (existingModel) {
+            if (preserveWithRepeatedID && !(0, utils_1.modelsEqual)(model, existingModel)) {
+                model._id = (0, id_1.generateID)(model.objectType);
+            }
+            else {
+                throw Error(`Encountered duplicate ids in models map while encoding: ${model._id}`);
+            }
         }
         models.set(model._id, model);
         child.forEach(addModel(path.concat(child.attrs.id), child));

package/dist/cjs/transformer/html.js

@@ -152,7 +152,6 @@ class HTMLTransformer {
         this.buildFront = () => {
             const manuscript = (0, project_bundle_1.findManuscript)(this.modelMap);
             const journal = (0, project_bundle_1.findJournal)(this.modelMap);
-            const titles = (0, project_bundle_1.findTitles)(this.modelMap);
             if (!manuscript) {
                 throw new Error('Manuscript not found in project modelMap');
             }
@@ -171,14 +170,14 @@ class HTMLTransformer {
             }
             const articleMeta = this.document.createElement('div');
             front.appendChild(articleMeta);
-            const title = this.document.createElement('h1');
-            if (titles.title) {
-                title.innerHTML = titles.title;
+            const articleTitle = this.document.createElement('h1');
+            if (manuscript.title) {
+                articleTitle.innerHTML = manuscript.title;
             }
             if (journal === null || journal === void 0 ? void 0 : journal.title) {
-                title.setAttribute('data-journal', journal.title);
+                articleTitle.setAttribute('data-journal', journal.title);
             }
-            articleMeta.appendChild(title);
+            articleMeta.appendChild(articleTitle);
             if (manuscript.DOI) {
                 const articleID = this.document.createElement('article-id');
                 articleID.setAttribute('pub-id-type', 'doi');

package/dist/cjs/transformer/node-types.js

@@ -57,7 +57,6 @@ exports.nodeTypesMap = new Map([
     [schema_1.schema.nodes.affiliation, json_schema_1.ObjectTypes.Affiliation],
     [schema_1.schema.nodes.contributor, json_schema_1.ObjectTypes.Contributor],
     [schema_1.schema.nodes.table_element_footer, json_schema_1.ObjectTypes.TableElementFooter],
-    [schema_1.schema.nodes.titles, json_schema_1.ObjectTypes.Titles],
     [schema_1.schema.nodes.contributors_section, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.affiliations_section, json_schema_1.ObjectTypes.Section],
 ]);

package/dist/cjs/transformer/project-bundle.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.findTitles = exports.findManuscriptById = exports.findManuscriptModelByType = exports.findJournal = exports.findManuscript = exports.parseProjectBundle = void 0;
+exports.findManuscriptById = exports.findManuscriptModelByType = exports.findJournal = exports.findManuscript = exports.parseProjectBundle = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const decode_1 = require("./decode");
 const object_types_1 = require("./object-types");
@@ -71,24 +71,3 @@ const findManuscriptById = (modelMap, manuscriptID) => {
     throw new Error(`There is no manuscript found for the following _id (${manuscriptID})`);
 };
 exports.findManuscriptById = findManuscriptById;
-const isTitle = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Titles);
-const findTitles = (modelMap) => {
-    for (const model of modelMap.values()) {
-        if (isTitle(model)) {
-            return model;
-        }
-    }
-    const defaultTitle = {
-        _id: 'MPTitles:8EB79C14-9F61-483A-902F-A0B8EF5973C1',
-        createdAt: 1538472121.690101,
-        updatedAt: 1538472121.690101,
-        objectType: 'MPTitles',
-        title: 'main title',
-        subtitle: 'subtitle',
-        runningTitle: 'running title',
-        manuscriptID: 'MPManuscript:E3830344-E77B-42BA-BD77-3E95489712A0',
-        containerID: 'MPProject:1',
-    };
-    return defaultTitle;
-};
-exports.findTitles = findTitles;

package/dist/es/jats/importer/parse-jats-article.js

@@ -13,7 +13,6 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-import { ObjectTypes, } from '@manuscripts/json-schema';
 import { DOMParser } from 'prosemirror-model';
 import { InvalidInput } from '../../errors';
 import { nodeFromHTML } from '../../lib/html';
@@ -49,16 +48,9 @@ export const parseJATSFront = async (front) => {
     const title = (_a = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > article-title')) === null || _a === void 0 ? void 0 : _a.innerHTML;
     const subtitle = (_b = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > subtitle')) === null || _b === void 0 ? void 0 : _b.innerHTML;
     const runningTitle = (_c = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('title-group > alt-title[alt-title-type="right-running"]')) === null || _c === void 0 ? void 0 : _c.innerHTML;
-    const manuscriptMeta = Object.assign({}, jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
-    const titles = {
-        objectType: ObjectTypes.Titles,
-        _id: generateID(ObjectTypes.Titles),
-        title: title ? inlineContentsFromJATSTitle(title) : undefined,
-        subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined,
-        runningTitle: runningTitle
+    const manuscriptMeta = Object.assign({ title: title ? inlineContentsFromJATSTitle(title) : undefined, subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined, runningTitle: runningTitle
             ? inlineContentsFromJATSTitle(runningTitle)
-            : undefined,
-    };
+            : undefined }, jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
     const { affiliations, affiliationIDs } = jatsFrontParser.parseAffiliationNodes([
         ...front.querySelectorAll('article-meta > contrib-group > aff'),
     ]);
@@ -78,7 +70,6 @@ export const parseJATSFront = async (front) => {
     const manuscript = Object.assign(Object.assign(Object.assign({}, buildManuscript()), manuscriptMeta), history);
     return {
         models: generateModelIDs([
-            titles,
             manuscript,
             ...footnotes,
             ...correspondingList,

package/dist/es/jats/jats-exporter.js

@@ -25,7 +25,7 @@ import { generateAttachmentFilename } from '../transformer/filename';
 import { buildTargets } from '../transformer/labels';
 import { isExecutableNodeType, isNodeType } from '../transformer/node-types';
 import { hasObjectType } from '../transformer/object-types';
-import { findManuscript, findManuscriptById, findTitles, } from '../transformer/project-bundle';
+import { findManuscript, findManuscriptById, } from '../transformer/project-bundle';
 import { chooseJatsFnType, chooseSecType, } from '../transformer/section-category';
 import { selectVersionIds } from './jats-versions';
 const warn = debug('manuscripts-transform');
@@ -231,7 +231,6 @@ export class JATSExporter {
         this.buildFront = (doi, id, links) => {
             var _a, _b, _c, _d;
             const manuscript = findManuscript(this.modelMap);
-            const titles = findTitles(this.modelMap);
             const front = this.document.createElement('front');
             const journalMeta = this.document.createElement('journal-meta');
             front.appendChild(journalMeta);
@@ -309,20 +308,20 @@ export class JATSExporter {
                     articleMeta.appendChild(link);
                 }
             }
-            if (titles.title) {
+            if (manuscript.title) {
                 const element = this.document.createElement('article-title');
-                this.setTitleContent(element, titles.title);
+                this.setTitleContent(element, manuscript.title);
                 titleGroup.appendChild(element);
             }
-            if (titles.subtitle) {
+            if (manuscript.subtitle) {
                 const element = this.document.createElement('subtitle');
-                this.setTitleContent(element, titles.subtitle);
+                this.setTitleContent(element, manuscript.subtitle);
                 titleGroup.appendChild(element);
             }
-            if (titles.runningTitle) {
+            if (manuscript.runningTitle) {
                 const element = this.document.createElement('alt-title');
                 element.setAttribute('alt-title-type', 'right-running');
-                this.setTitleContent(element, titles.runningTitle);
+                this.setTitleContent(element, manuscript.runningTitle);
                 titleGroup.appendChild(element);
             }
             const supplements = [...this.modelMap.values()].filter((model) => model.objectType === ObjectTypes.Supplement);
@@ -592,7 +591,6 @@ export class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
-                titles: () => '',
                 affiliations_section: () => '',
                 contributors_section: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],

package/dist/es/lib/utils.js

@@ -84,3 +84,15 @@ export const getTrimmedTextContent = (node, querySelector) => {
     }
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
+export function modelsEqual(model, model2) {
+    for (const v in model) {
+        for (const v2 in model2) {
+            const prepV = typeof v == 'object' ? JSON.stringify(v) : v;
+            const prepV2 = typeof v2 == 'object' ? JSON.stringify(v2) : v2;
+            if (prepV !== prepV2) {
+                return false;
+            }
+        }
+    }
+    return true;
+}

package/dist/es/schema/index.js

@@ -68,7 +68,6 @@ import { tableElement } from './nodes/table_element';
 import { tableElementFooter } from './nodes/table_element_footer';
 import { tableCell, tableRow } from './nodes/table_row';
 import { text } from './nodes/text';
-import { Titles } from './nodes/titles';
 import { tocElement } from './nodes/toc_element';
 import { tocSection } from './nodes/toc_section';
 export * from './groups';
@@ -124,7 +123,6 @@ export * from './nodes/affiliation';
 export * from './nodes/meta_section';
 export * from './nodes/contributor';
 export * from './nodes/table_element_footer';
-export * from './nodes/titles';
 export * from './nodes/affiliations_section';
 export * from './nodes/contributors_section';
 export const schema = new Schema({
@@ -201,7 +199,6 @@ export const schema = new Schema({
         meta_section: metaSection,
         contributor: contributor,
         table_element_footer: tableElementFooter,
-        titles: Titles,
         affiliations_section: affiliationsSection,
         contributors_section: contributorsSection,
     },

package/dist/es/transformer/builders.js

@@ -28,9 +28,10 @@ export const buildProject = (owner) => ({
     viewers: [],
     title: '',
 });
-export const buildManuscript = () => ({
+export const buildManuscript = (title = '') => ({
     _id: generateID(ObjectTypes.Manuscript),
     objectType: ObjectTypes.Manuscript,
+    title,
 });
 export const buildContributor = (bibliographicName, role = 'author', priority = 0, userID, invitationID) => ({
     _id: generateID(ObjectTypes.Contributor),

package/dist/es/transformer/decode.js

@@ -105,16 +105,6 @@ export class Decoder {
             rootSectionNodes.unshift(node);
         }
     }
-    createTitlesNode() {
-        const titlesModel = getModelsByType(this.modelMap, ObjectTypes.Titles)[0];
-        if (titlesModel) {
-            const titlesNode = this.decode(titlesModel);
-            return titlesNode;
-        }
-        else {
-            return null;
-        }
-    }
     createRootSectionNodes() {
         let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
         rootSections = this.addGeneratedLabels(rootSections);
@@ -147,15 +137,6 @@ export class Decoder {
     constructor(modelMap, allowMissingElements = false) {
         this.comments = new Map();
         this.creators = {
-            [ObjectTypes.Titles]: (data) => {
-                const model = data;
-                return schema.nodes.titles.create({
-                    id: model._id,
-                    title: model.title,
-                    subtitle: model.subtitle,
-                    runningTitle: model.runningTitle,
-                });
-            },
             [ObjectTypes.BibliographyElement]: (data) => {
                 var _a;
                 const model = data;
@@ -640,13 +621,9 @@ export class Decoder {
         };
         this.getModel = (id) => this.modelMap.get(id);
         this.createArticleNode = (manuscriptID) => {
-            const titlesNode = this.createTitlesNode();
             const rootSectionNodes = this.createRootSectionNodes();
             const metaSectionNode = this.createMetaSectionNode();
             const contents = [...rootSectionNodes, metaSectionNode];
-            if (titlesNode) {
-                contents.push(titlesNode);
-            }
             return schema.nodes.manuscript.create({
                 id: manuscriptID || this.getManuscriptID(),
             }, contents);

package/dist/es/transformer/encode.js

@@ -15,10 +15,11 @@
  */
 import { DOMSerializer } from 'prosemirror-model';
 import serializeToXML from 'w3c-xmlserializer';
-import { iterateChildren } from '../lib/utils';
+import { iterateChildren, modelsEqual } from '../lib/utils';
 import { hasGroup, isHighlightMarkerNode, isSectionNode, schema, } from '../schema';
 import { buildAttribution } from './builders';
 import { extractHighlightMarkers, isHighlightableModel, } from './highlight-markers';
+import { generateID } from './id';
 import { nodeTypesMap } from './node-types';
 import { buildSectionCategory } from './section-category';
 const serializer = DOMSerializer.fromSchema(schema);
@@ -255,12 +256,6 @@ function figureElementEncoder(node) {
     };
 }
 const encoders = {
-    titles: (node) => ({
-        title: node.attrs.title,
-        subtitle: node.attrs.subtitle,
-        runningTitle: node.attrs.runningTitle,
-        _id: node.attrs._id,
-    }),
     bibliography_element: (node) => ({
         elementType: 'div',
         contents: '',
@@ -567,7 +562,7 @@ export const modelFromNode = (node, parent, path, priority) => {
     }
     return { model, commentAnnotationsMap };
 };
-export const encode = (node) => {
+export const encode = (node, preserveWithRepeatedID = false) => {
     const models = new Map();
     const priority = {
         value: 1,
@@ -587,8 +582,14 @@ export const encode = (node) => {
             return;
         }
         const { model } = modelFromNode(child, parent, path, priority);
-        if (models.has(model._id)) {
-            throw Error(`Encountered duplicate ids in models map while encoding: ${model._id}`);
+        const existingModel = models.get(model._id);
+        if (existingModel) {
+            if (preserveWithRepeatedID && !modelsEqual(model, existingModel)) {
+                model._id = generateID(model.objectType);
+            }
+            else {
+                throw Error(`Encountered duplicate ids in models map while encoding: ${model._id}`);
+            }
         }
         models.set(model._id, model);
         child.forEach(addModel(path.concat(child.attrs.id), child));

package/dist/es/transformer/html.js

@@ -23,7 +23,7 @@ import { generateAttachmentFilename } from './filename';
 import { buildTargets } from './labels';
 import { isNodeType } from './node-types';
 import { hasObjectType } from './object-types';
-import { findJournal, findManuscript, findTitles } from './project-bundle';
+import { findJournal, findManuscript } from './project-bundle';
 import { chooseSecType } from './section-category';
 const chooseNodeName = (element) => {
     const nodeName = element.nodeName.toLowerCase();
@@ -146,7 +146,6 @@ export class HTMLTransformer {
         this.buildFront = () => {
             const manuscript = findManuscript(this.modelMap);
             const journal = findJournal(this.modelMap);
-            const titles = findTitles(this.modelMap);
             if (!manuscript) {
                 throw new Error('Manuscript not found in project modelMap');
             }
@@ -165,14 +164,14 @@ export class HTMLTransformer {
             }
             const articleMeta = this.document.createElement('div');
             front.appendChild(articleMeta);
-            const title = this.document.createElement('h1');
-            if (titles.title) {
-                title.innerHTML = titles.title;
+            const articleTitle = this.document.createElement('h1');
+            if (manuscript.title) {
+                articleTitle.innerHTML = manuscript.title;
             }
             if (journal === null || journal === void 0 ? void 0 : journal.title) {
-                title.setAttribute('data-journal', journal.title);
+                articleTitle.setAttribute('data-journal', journal.title);
             }
-            articleMeta.appendChild(title);
+            articleMeta.appendChild(articleTitle);
             if (manuscript.DOI) {
                 const articleID = this.document.createElement('article-id');
                 articleID.setAttribute('pub-id-type', 'doi');

package/dist/es/transformer/node-types.js

@@ -54,7 +54,6 @@ export const nodeTypesMap = new Map([
     [schema.nodes.affiliation, ObjectTypes.Affiliation],
     [schema.nodes.contributor, ObjectTypes.Contributor],
     [schema.nodes.table_element_footer, ObjectTypes.TableElementFooter],
-    [schema.nodes.titles, ObjectTypes.Titles],
     [schema.nodes.contributors_section, ObjectTypes.Section],
     [schema.nodes.affiliations_section, ObjectTypes.Section],
 ]);

package/dist/es/transformer/project-bundle.js

@@ -63,23 +63,3 @@ export const findManuscriptById = (modelMap, manuscriptID) => {
     }
     throw new Error(`There is no manuscript found for the following _id (${manuscriptID})`);
 };
-const isTitle = hasObjectType(ObjectTypes.Titles);
-export const findTitles = (modelMap) => {
-    for (const model of modelMap.values()) {
-        if (isTitle(model)) {
-            return model;
-        }
-    }
-    const defaultTitle = {
-        _id: 'MPTitles:8EB79C14-9F61-483A-902F-A0B8EF5973C1',
-        createdAt: 1538472121.690101,
-        updatedAt: 1538472121.690101,
-        objectType: 'MPTitles',
-        title: 'main title',
-        subtitle: 'subtitle',
-        runningTitle: 'running title',
-        manuscriptID: 'MPManuscript:E3830344-E77B-42BA-BD77-3E95489712A0',
-        containerID: 'MPProject:1',
-    };
-    return defaultTitle;
-};

package/dist/types/lib/utils.d.ts

@@ -13,6 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
+import { Model } from '@manuscripts/json-schema';
 import { Node as ProsemirrorNode, ResolvedPos } from 'prosemirror-model';
 import { ManuscriptEditorState, ManuscriptNode } from '../schema';
 export declare function iterateChildren(node: ManuscriptNode, recurse?: boolean): Iterable<ManuscriptNode>;
@@ -27,3 +28,4 @@ export declare const findParentNodeClosestToPos: ($pos: ResolvedPos, predicate:
     node: ProsemirrorNode;
 } | undefined;
 export declare const getTrimmedTextContent: (node: Element | Document, querySelector: string) => string | null | undefined;
+export declare function modelsEqual(model: Model, model2: Model): boolean;

package/dist/types/schema/index.d.ts

@@ -68,7 +68,6 @@ export * from './nodes/affiliation';
 export * from './nodes/meta_section';
 export * from './nodes/contributor';
 export * from './nodes/table_element_footer';
-export * from './nodes/titles';
 export * from './nodes/affiliations_section';
 export * from './nodes/contributors_section';
 export declare const schema: Schema<Nodes, Marks>;

package/dist/types/schema/types.d.ts

@@ -17,7 +17,7 @@ import { Fragment, Mark as ProsemirrorMark, MarkType, Node as ProsemirrorNode, N
 import { EditorState, NodeSelection, Plugin, TextSelection, Transaction } from 'prosemirror-state';
 import { EditorView, NodeView } from 'prosemirror-view';
 export type Marks = 'bold' | 'code' | 'italic' | 'smallcaps' | 'strikethrough' | 'styled' | 'subscript' | 'superscript' | 'underline' | 'tracked_insert' | 'tracked_delete';
-export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comment_list' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keywords_group' | 'keywords_section' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'meta_section' | 'contributor' | 'table_element_footer' | 'titles' | 'affiliations_section' | 'contributors_section';
+export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comment_list' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keywords_group' | 'keywords_section' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section' | 'affiliation' | 'meta_section' | 'contributor' | 'table_element_footer' | 'affiliations_section' | 'contributors_section';
 export type ManuscriptSchema = Schema<Nodes, Marks>;
 export type ManuscriptEditorState = EditorState;
 export type ManuscriptEditorView = EditorView;

package/dist/types/transformer/builders.d.ts

@@ -28,7 +28,7 @@ export type BuildEmbedded<T extends EmbeddedModel, O> = Pick<T, Exclude<keyof T,
     objectType: O;
 };
 export declare const buildProject: (owner: string) => Build<Project>;
-export declare const buildManuscript: () => Build<Manuscript>;
+export declare const buildManuscript: (title?: string) => Build<Manuscript>;
 export type ContributorRoleType = 'author';
 export declare const buildContributor: (bibliographicName: BibliographicName, role?: ContributorRoleType, priority?: number, userID?: string, invitationID?: string) => Build<Contributor>;
 export declare const buildBibliographyItem: (data: Partial<Build<BibliographyItem>>) => Build<BibliographyItem>;

package/dist/types/transformer/decode.d.ts

@@ -30,7 +30,6 @@ export declare class Decoder {
     private handleMissingRootSectionNodes;
     private createAffiliationSectionNode;
     private createContributorSectionNode;
-    private createTitlesNode;
     private createRootSectionNodes;
     private createCommentsNode;
     private getComments;

package/dist/types/transformer/encode.d.ts

@@ -25,5 +25,5 @@ export declare const modelFromNode: (node: ManuscriptNode, parent: ManuscriptNod
 interface PrioritizedValue {
     value: number;
 }
-export declare const encode: (node: ManuscriptNode) => Map<string, Model>;
+export declare const encode: (node: ManuscriptNode, preserveWithRepeatedID?: boolean) => Map<string, Model>;
 export {};

package/dist/types/transformer/project-bundle.d.ts

@@ -13,7 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-import { Journal, Manuscript, Model, ObjectTypes, Titles } from '@manuscripts/json-schema';
+import { Journal, Manuscript, Model, ObjectTypes } from '@manuscripts/json-schema';
 import { ManuscriptModel } from './models';
 export interface ProjectBundle {
     version: string;
@@ -27,4 +27,3 @@ export declare const findManuscript: (modelMap: Map<string, Model>) => Manuscrip
 export declare const findJournal: (modelMap: Map<string, Model>) => Journal | null;
 export declare const findManuscriptModelByType: <T extends ManuscriptModel>(modelMap: Map<string, Model>, manuscript: Manuscript, objectType: ObjectTypes) => T | undefined;
 export declare const findManuscriptById: (modelMap: Map<string, Model>, manuscriptID: string) => Manuscript;
-export declare const findTitles: (modelMap: Map<string, Model>) => Titles;

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "1.5.0-LEAN-2852-9",
+  "version": "1.5.0-LIT-528106",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",
@@ -29,7 +29,7 @@
     "version": "yarn build"
   },
   "dependencies": {
-    "@manuscripts/json-schema": "2.2.0-LEAN-2852-5",
+    "@manuscripts/json-schema": "^2.2.0",
     "debug": "^4.3.4",
     "jszip": "^3.10.1",
     "mathjax-full": "^3.2.2",

package/dist/cjs/schema/nodes/titles.js

@@ -1,32 +0,0 @@
-"use strict";
-/*!
- * © 2019 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.Titles = void 0;
-exports.Titles = {
-    content: 'text*',
-    marks: 'italic smallcaps subscript superscript',
-    attrs: {
-        id: { default: '' },
-        title: { default: '' },
-        subtitle: { default: '' },
-        runningTitle: { default: '' },
-        dataTracked: { default: null },
-    },
-    group: 'block element',
-    parseDOM: [{ tag: 'div' }],
-    toDOM: () => ['div', 0],
-};

package/dist/es/schema/nodes/titles.js

@@ -1,29 +0,0 @@
-/*!
- * © 2019 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-export const Titles = {
-    content: 'text*',
-    marks: 'italic smallcaps subscript superscript',
-    attrs: {
-        id: { default: '' },
-        title: { default: '' },
-        subtitle: { default: '' },
-        runningTitle: { default: '' },
-        dataTracked: { default: null },
-    },
-    group: 'block element',
-    parseDOM: [{ tag: 'div' }],
-    toDOM: () => ['div', 0],
-};

package/dist/types/schema/nodes/titles.d.ts

@@ -1,28 +0,0 @@
-/*!
- * © 2019 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-import { NodeSpec } from 'prosemirror-model';
-import { ManuscriptNode } from '../types';
-interface Attrs {
-    id: string;
-    title: string;
-    subtitle: string;
-    runningTitle: string;
-}
-export interface TitlesNode extends ManuscriptNode {
-    attrs: Attrs;
-}
-export declare const Titles: NodeSpec;
-export {};