@manuscripts/transform 1.4.6 → 1.5.0

package/dist/cjs/jats/importer/jats-body-dom-parser.js

@@ -505,6 +505,132 @@ const nodes = [
             };
         },
     },
+    {
+        tag: 'sec[sec-type="affiliations"]',
+        node: 'affiliations_section',
+        getAttrs: (node) => {
+            const element = node;
+            return {
+                id: element.getAttribute('id'),
+                category: 'MPSectionCategory:affiliations',
+            };
+        },
+    },
+    {
+        tag: 'aff',
+        node: 'affiliation',
+        context: 'affiliations_section/',
+        getAttrs: (node) => {
+            const element = node;
+            const aff = {
+                id: element.getAttribute('id'),
+            };
+            const institution = element.getAttribute('institution');
+            if (institution) {
+                aff.institution = institution;
+            }
+            const email = element.getAttribute('email');
+            if (email) {
+                aff.bibliographicName = JSON.parse(email);
+            }
+            const department = element.getAttribute('department');
+            if (department) {
+                aff.department = department;
+            }
+            const addressLine1 = element.getAttribute('addressLine1');
+            if (addressLine1) {
+                aff.addressLine1 = addressLine1;
+            }
+            const addressLine2 = element.getAttribute('addressLine2');
+            if (addressLine2) {
+                aff.addressLine2 = addressLine2;
+            }
+            const addressLine3 = element.getAttribute('addressLine3');
+            if (addressLine3) {
+                aff.addressLine3 = addressLine3;
+            }
+            const postCode = element.getAttribute('postCode');
+            if (postCode) {
+                aff.postCode = postCode;
+            }
+            const country = element.getAttribute('country');
+            if (country) {
+                aff.country = country;
+            }
+            const priority = element.getAttribute('priority');
+            if (priority) {
+                aff.priority = parseInt(priority);
+            }
+            return aff;
+        },
+    },
+    {
+        tag: 'sec[sec-type="contributors"]',
+        node: 'contributors_section',
+        getAttrs: (node) => {
+            const element = node;
+            return {
+                id: element.getAttribute('id'),
+                category: 'MPSectionCategory:contributors',
+            };
+        },
+    },
+    {
+        tag: 'contrib',
+        node: 'contributor',
+        context: 'contributors_section/',
+        getAttrs: (node) => {
+            const element = node;
+            const contrib = {
+                id: element.getAttribute('id'),
+            };
+            const role = element.getAttribute('role');
+            if (role) {
+                contrib.role = role;
+            }
+            const affiliations = element.getAttribute('affiliations');
+            if (affiliations) {
+                contrib.affiliations = JSON.parse(affiliations);
+            }
+            const footnote = element.getAttribute('footnote');
+            if (footnote) {
+                contrib.footnote = JSON.parse(footnote);
+            }
+            const corresp = element.getAttribute('corresp');
+            if (corresp) {
+                contrib.corresp = JSON.parse(corresp);
+            }
+            const bibliographicName = element.getAttribute('bibliographicName');
+            if (bibliographicName) {
+                contrib.bibliographicName = JSON.parse(bibliographicName);
+            }
+            const userID = element.getAttribute('userID');
+            if (userID) {
+                contrib.userID = userID;
+            }
+            const priority = element.getAttribute('priority');
+            if (priority) {
+                contrib.priority = parseInt(priority);
+            }
+            const invitationID = element.getAttribute('invitationID');
+            if (invitationID) {
+                contrib.invitationID = invitationID;
+            }
+            const objectType = element.getAttribute('objectType');
+            if (objectType) {
+                contrib.objectType = objectType;
+            }
+            const isCorresponding = element.getAttribute('isCorresponding');
+            if (isCorresponding) {
+                contrib.isCorresponding = JSON.parse(isCorresponding);
+            }
+            const ORCIDIdentifier = element.getAttribute('ORCIDIdentifier');
+            if (ORCIDIdentifier) {
+                contrib.ORCIDIdentifier = ORCIDIdentifier;
+            }
+            return contrib;
+        },
+    },
     {
         tag: 'sec[sec-type="keywords"]',
         node: 'keywords_section',

package/dist/cjs/jats/importer/jats-body-transformations.js

@@ -284,6 +284,65 @@ exports.jatsBodyTransformations = {
             }
         }
     },
+    moveAffiliationsToBody(doc, affiliations, body, createElement) {
+        if (affiliations === null || affiliations === void 0 ? void 0 : affiliations.length) {
+            const section = createElement('sec');
+            section.setAttribute('sec-type', 'affiliations');
+            affiliations.forEach((affiliation) => {
+                const item = doc.createElement('aff');
+                item.setAttribute('id', affiliation._id);
+                affiliation.institution &&
+                    item.setAttribute('institution', affiliation.institution);
+                affiliation.email &&
+                    item.setAttribute('email', JSON.stringify(affiliation.email));
+                affiliation.department &&
+                    item.setAttribute('department', affiliation.department);
+                affiliation.addressLine1 &&
+                    item.setAttribute('addressLine1', affiliation.addressLine1);
+                affiliation.addressLine2 &&
+                    item.setAttribute('addressLine2', affiliation.addressLine2);
+                affiliation.addressLine3 &&
+                    item.setAttribute('addressLine3', affiliation.addressLine3);
+                affiliation.postCode &&
+                    item.setAttribute('postCode', affiliation.postCode);
+                affiliation.country && item.setAttribute('country', affiliation.country);
+                (affiliation.priority === 0 || affiliation.priority) &&
+                    item.setAttribute('priority', affiliation.priority.toString());
+                section.appendChild(item);
+            });
+            body.prepend(section);
+        }
+    },
+    moveAuthorsToBody(doc, authors, body, createElement) {
+        if (authors === null || authors === void 0 ? void 0 : authors.length) {
+            const section = createElement('sec');
+            section.setAttribute('sec-type', 'contributors');
+            authors.forEach((author) => {
+                const item = doc.createElement('contrib');
+                item.setAttribute('id', author._id);
+                author.role && item.setAttribute('role', author.role);
+                author.affiliations &&
+                    item.setAttribute('affiliations', JSON.stringify(author.affiliations));
+                author.footnote &&
+                    item.setAttribute('footnote', JSON.stringify(author.footnote));
+                author.corresp &&
+                    item.setAttribute('corresp', JSON.stringify(author.corresp));
+                author.bibliographicName &&
+                    item.setAttribute('bibliographicName', JSON.stringify(author.bibliographicName));
+                author.userID && item.setAttribute('userID', author.userID);
+                author.invitationID &&
+                    item.setAttribute('invitationID', author.invitationID);
+                author.isCorresponding &&
+                    item.setAttribute('isCorresponding', JSON.stringify(author.isCorresponding));
+                author.ORCIDIdentifier &&
+                    item.setAttribute('ORCIDIdentifier', author.ORCIDIdentifier);
+                (author.priority === 0 || author.priority) &&
+                    item.setAttribute('priority', author.priority.toString());
+                section.appendChild(item);
+            });
+            body.prepend(section);
+        }
+    },
     moveFloatsGroupToBody(doc, body, createElement) {
         const floatsGroup = doc.querySelector('floats-group');
         if (floatsGroup) {

package/dist/cjs/jats/importer/jats-front-parser.js

@@ -21,7 +21,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.jatsFrontParser = void 0;
 const debug_1 = __importDefault(require("debug"));
 const utils_1 = require("../../lib/utils");
-const builders_1 = require("../../transformer/builders");
+const transformer_1 = require("../../transformer");
 const jats_journal_meta_parser_1 = require("./jats-journal-meta-parser");
 const warn = (0, debug_1.default)('manuscripts-transform');
 const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
@@ -126,7 +126,7 @@ exports.jatsFrontParser = {
         for (const supplementNode of supplementNodes) {
             const supplTitle = (_a = (0, utils_1.getTrimmedTextContent)(supplementNode, 'caption > title')) !== null && _a !== void 0 ? _a : '';
             const href = (_b = supplementNode.getAttributeNS(XLINK_NAMESPACE, 'href')) !== null && _b !== void 0 ? _b : '';
-            const supplementaryMaterial = (0, builders_1.buildSupplementaryMaterial)(supplTitle, href);
+            const supplementaryMaterial = (0, transformer_1.buildSupplementaryMaterial)(supplTitle, href);
             const mimeType = (_c = supplementNode.getAttribute('mimetype')) !== null && _c !== void 0 ? _c : '';
             const mimeSubtype = (_d = supplementNode.getAttribute('mime-subtype')) !== null && _d !== void 0 ? _d : '';
             if (mimeType && mimeSubtype) {
@@ -140,7 +140,7 @@ exports.jatsFrontParser = {
         const affiliationIDs = new Map();
         const affiliations = affiliationNodes.map((affiliationNode, priority) => {
             var _a, _b;
-            const affiliation = (0, builders_1.buildAffiliation)('', priority);
+            const affiliation = (0, transformer_1.buildAffiliation)('', priority);
             for (const node of affiliationNode.querySelectorAll('institution')) {
                 const content = (_a = node.textContent) === null || _a === void 0 ? void 0 : _a.trim();
                 if (!content) {
@@ -190,7 +190,7 @@ exports.jatsFrontParser = {
     parseFootnoteNodes(footnoteNodes) {
         const footnoteIDs = new Map();
         const footnotes = footnoteNodes.map((footnoteNode) => {
-            const fn = (0, builders_1.buildFootnote)('', footnoteNode.innerHTML);
+            const fn = (0, transformer_1.buildFootnote)('', footnoteNode.innerHTML);
             const id = footnoteNode.getAttribute('id');
             if (id) {
                 footnoteIDs.set(id, fn._id);
@@ -210,7 +210,7 @@ exports.jatsFrontParser = {
             if (label) {
                 label.remove();
             }
-            const corresponding = (0, builders_1.buildCorresp)((_b = (_a = correspNode.textContent) === null || _a === void 0 ? void 0 : _a.trim()) !== null && _b !== void 0 ? _b : '');
+            const corresponding = (0, transformer_1.buildCorresp)((_b = (_a = correspNode.textContent) === null || _a === void 0 ? void 0 : _a.trim()) !== null && _b !== void 0 ? _b : '');
             corresponding.label = ((_c = label === null || label === void 0 ? void 0 : label.textContent) === null || _c === void 0 ? void 0 : _c.trim()) || undefined;
             const id = correspNode.getAttribute('id');
             if (id) {
@@ -226,7 +226,7 @@ exports.jatsFrontParser = {
     parseAuthorNodes(authorNodes, affiliationIDs, footnoteIDs, correspondingIDs) {
         return authorNodes.map((authorNode, priority) => {
             var _a, _b;
-            const name = (0, builders_1.buildBibliographicName)({});
+            const name = (0, transformer_1.buildBibliographicName)({});
             const given = (0, utils_1.getTrimmedTextContent)(authorNode, 'name > given-names');
             if (given) {
                 name.given = given;
@@ -235,7 +235,7 @@ exports.jatsFrontParser = {
             if (surname) {
                 name.family = surname;
             }
-            const contributor = (0, builders_1.buildContributor)(name, 'author', priority);
+            const contributor = (0, transformer_1.buildContributor)(name, 'author', priority);
             const corresponding = authorNode.getAttribute('corresp') === 'yes';
             if (corresponding) {
                 contributor.isCorresponding = corresponding;

package/dist/cjs/jats/importer/jats-parser-utils.js

@@ -19,6 +19,7 @@ exports.htmlFromJatsNode = exports.fixBodyPMNode = exports.flatten = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const transformer_1 = require("../../transformer");
 const isAuxiliaryObjectReference = (0, transformer_1.hasObjectType)(json_schema_1.ObjectTypes.AuxiliaryObjectReference);
+const excludedObjectTypes = [json_schema_1.ObjectTypes.Contributor, json_schema_1.ObjectTypes.Affiliation];
 function flatten(arrays) {
     return [].concat(...arrays);
 }
@@ -49,6 +50,9 @@ const addMissingID = (node, replacements, warnings) => {
         warnings.push(`Unknown object type for node type ${node.type.name}`);
         return;
     }
+    if (excludedObjectTypes.includes(objectType)) {
+        return;
+    }
     const previousID = node.attrs.id;
     const nextID = (0, transformer_1.generateID)(objectType);
     if (previousID) {

package/dist/cjs/jats/importer/parse-jats-article.js

@@ -74,13 +74,13 @@ const parseJATSFront = async (front) => {
     return {
         models: generateModelIDs([
             manuscript,
-            ...affiliations,
-            ...authors,
             ...footnotes,
             ...correspondingList,
             journal,
             ...supplements,
         ]),
+        authors: [...authors],
+        affiliations: [...affiliations],
     };
 };
 exports.parseJATSFront = parseJATSFront;
@@ -106,7 +106,7 @@ const parseJATSReferences = (back, body, createElement) => {
     };
 };
 exports.parseJATSReferences = parseJATSReferences;
-const parseJATSBody = (document, body, bibliographyItems, refModels, referenceIdsMap, footnotesOrder) => {
+const parseJATSBody = (document, body, bibliographyItems, authors, affiliations, refModels, referenceIdsMap, footnotesOrder) => {
     const createElement = createElementFn(document);
     const orderedFootnotesIDs = (0, footnotes_order_1.createOrderedFootnotesIDs)(document);
     jats_body_transformations_1.jatsBodyTransformations.moveFloatsGroupToBody(document, body, createElement);
@@ -116,6 +116,8 @@ const parseJATSBody = (document, body, bibliographyItems, refModels, referenceId
     jats_body_transformations_1.jatsBodyTransformations.moveTableFooterToEnd(body);
     jats_body_transformations_1.jatsBodyTransformations.moveBlockNodesFromParagraph(document, body, createElement);
     jats_body_transformations_1.jatsBodyTransformations.moveKeywordsToBody(document, body, createElement);
+    jats_body_transformations_1.jatsBodyTransformations.moveAffiliationsToBody(document, affiliations, body, createElement);
+    jats_body_transformations_1.jatsBodyTransformations.moveAuthorsToBody(document, authors, body, createElement);
     const node = jats_body_dom_parser_1.jatsBodyDOMParser.parse(body);
     if (!node.firstChild) {
         throw new Error('No content was parsed from the JATS article body');
@@ -168,14 +170,14 @@ const parseJATSArticle = async (doc) => {
     }
     const authorQueriesMap = (0, jats_comments_1.markProcessingInstructions)(doc);
     const createElement = createElementFn(document);
-    const { models: frontModels } = await (0, exports.parseJATSFront)(front);
+    const { models: frontModels, authors, affiliations, } = await (0, exports.parseJATSFront)(front);
     const { references, crossReferences, referenceQueriesMap, referenceIdsMap } = (0, exports.parseJATSReferences)(back, body, createElement);
     transformTables(doc.querySelectorAll('table-wrap > table'), createElement);
     const footnotesOrder = (0, footnotes_order_1.createEmptyFootnotesOrder)();
     let elementsOrder = [];
     const bodyModels = [];
     if (body) {
-        const bodyDoc = (0, exports.parseJATSBody)(doc, body, references, crossReferences, referenceIdsMap, footnotesOrder);
+        const bodyDoc = (0, exports.parseJATSBody)(doc, body, references, authors, affiliations, crossReferences, referenceIdsMap, footnotesOrder);
         bodyModels.push(...(0, encode_1.encode)(bodyDoc).values());
         elementsOrder = (0, exports.getElementsOrder)(bodyDoc);
     }

package/dist/cjs/jats/jats-exporter.js

@@ -598,10 +598,10 @@ class JATSExporter {
         this.createSerializer = () => {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
+                affiliations_section: () => '',
+                contributors_section: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],
-                contributor_list: () => '',
                 contributor: () => '',
-                affiliation_list: () => '',
                 affiliation: () => '',
                 meta_section: () => '',
                 attribution: () => ['attrib', 0],

package/dist/cjs/lib/core-section-categories.js

@@ -16,7 +16,7 @@ exports.coreSectionCategories = [
         desc: 'Backmatter section for grouping',
         objectType: 'MPSectionCategory',
         titles: [],
-        priority: 170,
+        priority: 180,
     },
     {
         _id: 'MPSectionCategory:body',
@@ -24,6 +24,6 @@ exports.coreSectionCategories = [
         desc: 'Body section for grouping',
         objectType: 'MPSectionCategory',
         titles: [],
-        priority: 190,
+        priority: 200,
     },
 ];

package/dist/cjs/schema/index.js

@@ -33,7 +33,7 @@ exports.schema = void 0;
 const prosemirror_model_1 = require("prosemirror-model");
 const marks_1 = require("./marks");
 const affiliation_1 = require("./nodes/affiliation");
-const affiliation_list_1 = require("./nodes/affiliation_list");
+const affiliations_section_1 = require("./nodes/affiliations_section");
 const attribution_1 = require("./nodes/attribution");
 const bibliography_element_1 = require("./nodes/bibliography_element");
 const bibliography_item_1 = require("./nodes/bibliography_item");
@@ -45,7 +45,7 @@ const citation_1 = require("./nodes/citation");
 const comment_1 = require("./nodes/comment");
 const comment_list_1 = require("./nodes/comment_list");
 const contributor_1 = require("./nodes/contributor");
-const contributor_list_1 = require("./nodes/contributor_list");
+const contributors_section_1 = require("./nodes/contributors_section");
 const cross_reference_1 = require("./nodes/cross_reference");
 const doc_1 = require("./nodes/doc");
 const equation_1 = require("./nodes/equation");
@@ -137,11 +137,11 @@ __exportStar(require("./nodes/text"), exports);
 __exportStar(require("./nodes/toc_element"), exports);
 __exportStar(require("./nodes/toc_section"), exports);
 __exportStar(require("./nodes/affiliation"), exports);
-__exportStar(require("./nodes/affiliation_list"), exports);
 __exportStar(require("./nodes/meta_section"), exports);
-__exportStar(require("./nodes/contributor_list"), exports);
 __exportStar(require("./nodes/contributor"), exports);
 __exportStar(require("./nodes/table_element_footer"), exports);
+__exportStar(require("./nodes/affiliations_section"), exports);
+__exportStar(require("./nodes/contributors_section"), exports);
 exports.schema = new prosemirror_model_1.Schema({
     marks: {
         bold: marks_1.bold,
@@ -214,9 +214,9 @@ exports.schema = new prosemirror_model_1.Schema({
         toc_section: toc_section_1.tocSection,
         affiliation: affiliation_1.affiliation,
         meta_section: meta_section_1.metaSection,
-        affiliation_list: affiliation_list_1.affiliationList,
-        contributor_list: contributor_list_1.contributorList,
         contributor: contributor_1.contributor,
         table_element_footer: table_element_footer_1.tableElementFooter,
+        affiliations_section: affiliations_section_1.affiliationsSection,
+        contributors_section: contributors_section_1.contributorsSection,
     },
 });

package/dist/cjs/schema/nodes/affiliation.js

@@ -11,6 +11,7 @@ exports.affiliation = {
         addressLine3: { default: '' },
         postCode: { default: '' },
         country: { default: '' },
+        priority: { default: undefined },
         email: {
             default: {
                 href: undefined,
@@ -18,6 +19,8 @@ exports.affiliation = {
             },
         },
     },
+    group: 'block element',
+    toDOM: () => ['span'],
 };
 const isAffiliationNode = (node) => node.type === node.type.schema.nodes.affiliation;
 exports.isAffiliationNode = isAffiliationNode;

package/dist/cjs/schema/nodes/affiliations_section.js

@@ -0,0 +1,15 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.isAffiliationsSectionNode = exports.affiliationsSection = void 0;
+exports.affiliationsSection = {
+    content: 'section_title? affiliation*',
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+    },
+    group: 'block sections',
+    selectable: false,
+    toDOM: () => ['section', 0],
+};
+const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations_section;
+exports.isAffiliationsSectionNode = isAffiliationsSectionNode;

package/dist/cjs/schema/nodes/contributor.js

@@ -1,15 +1,22 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.contributor = void 0;
+exports.isContributorNode = exports.contributor = void 0;
 exports.contributor = {
     attrs: {
         id: { default: '' },
         role: { default: '' },
         affiliations: { default: [] },
+        footnote: { default: undefined },
+        corresp: { default: undefined },
         bibliographicName: { default: {} },
         userID: { default: undefined },
         invitationID: { default: undefined },
         isCorresponding: { default: undefined },
         ORCIDIdentifier: { default: undefined },
+        priority: { default: undefined },
     },
+    group: 'block element',
+    toDOM: () => ['span'],
 };
+const isContributorNode = (node) => node.type === node.type.schema.nodes.contributor;
+exports.isContributorNode = isContributorNode;

package/dist/cjs/schema/nodes/contributors_section.js

@@ -0,0 +1,15 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.isContributorsSectionNode = exports.contributorsSection = void 0;
+exports.contributorsSection = {
+    content: 'section_title? contributor*',
+    attrs: {
+        id: { default: '' },
+        dataTracked: { default: null },
+    },
+    group: 'block sections',
+    selectable: false,
+    toDOM: () => ['section', 0],
+};
+const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors_section;
+exports.isContributorsSectionNode = isContributorsSectionNode;

package/dist/cjs/schema/nodes/meta_section.js

@@ -17,7 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.metaSection = void 0;
 exports.metaSection = {
-    content: 'affiliation_list contributor_list comment_list',
+    content: 'comment_list',
     attrs: {
         id: { default: 'META_SECTION' },
     },

package/dist/cjs/transformer/decode.js

@@ -67,29 +67,16 @@ exports.isManuscriptNode = isManuscriptNode;
 const isParagraphElement = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.ParagraphElement);
 const isFootnote = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Footnote);
 const isKeyword = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Keyword);
+const isKeywordsSection = (model) => model.category === 'MPSectionCategory:keywords';
+const isAffiliationsSection = (model) => model.category === 'MPSectionCategory:affiliations';
+const isContributorsSection = (model) => model.category === 'MPSectionCategory:contributors';
 const hasParentSection = (id) => (section) => section.path &&
     section.path.length > 1 &&
     section.path[section.path.length - 2] === id;
 class Decoder {
-    createAffiliationListNode() {
-        const affiliationNodes = getAffiliations(this.modelMap)
-            .map((affiliation) => this.decode(affiliation))
-            .filter(Boolean);
-        return schema_1.schema.nodes.affiliation_list.createAndFill({}, affiliationNodes);
-    }
-    createContributorListNode() {
-        const contributorNodes = getContributors(this.modelMap)
-            .map((contributor) => this.decode(contributor))
-            .filter(Boolean);
-        return schema_1.schema.nodes.contributor_list.createAndFill({}, contributorNodes);
-    }
     createMetaSectionNode() {
-        const affiliationListNode = this.createAffiliationListNode();
-        const contributorListNode = this.createContributorListNode();
         const commentListNode = this.createCommentListNode();
         return schema_1.schema.nodes.meta_section.createAndFill({}, [
-            affiliationListNode,
-            contributorListNode,
             commentListNode,
         ]);
     }
@@ -98,12 +85,43 @@ class Decoder {
             ...this.comments.values(),
         ]);
     }
+    handleMissingRootSectionNodes(rootSectionNodes) {
+        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations_section')) {
+            this.createAffiliationSectionNode(rootSectionNodes);
+        }
+        if (!rootSectionNodes.find((node) => node.type.name === 'contributors_section')) {
+            this.createContributorSectionNode(rootSectionNodes);
+        }
+    }
+    createAffiliationSectionNode(rootSectionNodes) {
+        const affiliationNodes = getAffiliations(this.modelMap)
+            .map((affiliation) => this.decode(affiliation))
+            .filter(Boolean);
+        if (affiliationNodes.length) {
+            const node = schema_1.schema.nodes.affiliations_section.createAndFill({
+                id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
+            }, affiliationNodes);
+            rootSectionNodes.unshift(node);
+        }
+    }
+    createContributorSectionNode(rootSectionNodes) {
+        const contributorNodes = getContributors(this.modelMap)
+            .map((contributor) => this.decode(contributor))
+            .filter(Boolean);
+        if (contributorNodes.length) {
+            const node = schema_1.schema.nodes.contributors_section.createAndFill({
+                id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
+            }, contributorNodes);
+            rootSectionNodes.unshift(node);
+        }
+    }
     createRootSectionNodes() {
         let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
         rootSections = this.addGeneratedLabels(rootSections);
         const rootSectionNodes = rootSections
             .map(this.decode)
             .filter(exports.isManuscriptNode);
+        this.handleMissingRootSectionNodes(rootSectionNodes);
         if (!rootSectionNodes.length) {
             rootSectionNodes.push(schema_1.schema.nodes.section.createAndFill({
                 id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
@@ -436,13 +454,12 @@ class Decoder {
             },
             [json_schema_1.ObjectTypes.Section]: (data) => {
                 const model = data;
-                const isKeywordsSection = model.category === 'MPSectionCategory:keywords';
                 const elements = [];
                 if (model.elementIDs) {
                     for (const id of model.elementIDs) {
                         const element = this.getModel(id);
                         if (element) {
-                            if (isKeywordsSection && isParagraphElement(element)) {
+                            if (isKeywordsSection(model) && isParagraphElement(element)) {
                                 continue;
                             }
                             elements.push(element);
@@ -485,11 +502,17 @@ class Decoder {
                 const sectionNodeType = (0, section_category_1.chooseSectionNodeType)(sectionCategory);
                 const commentNodes = this.createCommentsNode(model);
                 commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
-                const content = (sectionLabelNode
-                    ? [sectionLabelNode, sectionTitleNode]
-                    : [sectionTitleNode])
-                    .concat(elementNodes)
-                    .concat(nestedSections);
+                let content;
+                if (isAffiliationsSection(model) || isContributorsSection(model)) {
+                    content = elementNodes.concat(nestedSections);
+                }
+                else {
+                    content = (sectionLabelNode
+                        ? [sectionLabelNode, sectionTitleNode]
+                        : [sectionTitleNode])
+                        .concat(elementNodes)
+                        .concat(nestedSections);
+                }
                 const sectionNode = sectionNodeType.createAndFill({
                     id: model._id,
                     category: sectionCategory,
@@ -578,6 +601,8 @@ class Decoder {
                     postCode: model.postCode,
                     country: model.country,
                     email: model.email,
+                    department: model.department,
+                    priority: model.priority,
                 });
             },
             [json_schema_1.ObjectTypes.Contributor]: (data) => {
@@ -591,6 +616,9 @@ class Decoder {
                     invitationID: model.invitationID,
                     isCorresponding: model.isCorresponding,
                     ORCIDIdentifier: model.ORCIDIdentifier,
+                    footnote: model.footnote,
+                    corresp: model.corresp,
+                    priority: model.priority,
                 });
             },
         };

package/dist/cjs/transformer/encode.js

@@ -434,6 +434,22 @@ const encoders = {
             .map((childNode) => childNode.attrs.id)
             .filter((id) => id),
     }),
+    affiliations_section: (node, parent, path, priority) => ({
+        category: (0, section_category_1.buildSectionCategory)(node),
+        priority: priority.value++,
+        path: path.concat([node.attrs.id]),
+        elementIDs: childElements(node)
+            .map((childNode) => childNode.attrs.id)
+            .filter((id) => id),
+    }),
+    contributors_section: (node, parent, path, priority) => ({
+        category: (0, section_category_1.buildSectionCategory)(node),
+        priority: priority.value++,
+        path: path.concat([node.attrs.id]),
+        elementIDs: childElements(node)
+            .map((childNode) => childNode.attrs.id)
+            .filter((id) => id),
+    }),
     missing_figure: (node) => ({
         position: node.attrs.position || undefined,
     }),
@@ -514,6 +530,7 @@ const encoders = {
         postCode: node.attrs.postCode,
         country: node.attrs.country,
         email: node.attrs.email,
+        priority: node.attrs.priority,
     }),
     contributor: (node) => ({
         role: node.attrs.role,
@@ -523,6 +540,9 @@ const encoders = {
         invitationID: node.attrs.invitationID,
         isCorresponding: node.attrs.isCorresponding,
         ORCIDIdentifier: node.attrs.ORCIDIdentifier,
+        footnote: node.attrs.footnote,
+        corresp: node.attrs.corresp,
+        priority: node.attrs.priority,
     }),
 };
 const modelData = (node, parent, path, priority) => {