@manuscripts/transform 1.4.2 → 1.4.4-LEAN-2737

package/dist/cjs/jats/importer/jats-body-dom-parser.js

@@ -651,9 +651,13 @@ const nodes = [
         getAttrs: (node) => {
             var _a;
             const element = node;
+            const embeddedCitationAttr = element.getAttribute('data-reference-embedded-citation');
             return {
                 rid: element.getAttribute('rid'),
                 contents: (_a = element.textContent) === null || _a === void 0 ? void 0 : _a.trim(),
+                embeddedCitationItems: embeddedCitationAttr
+                    ? JSON.parse(embeddedCitationAttr)
+                    : null,
             };
         },
     },

package/dist/cjs/jats/importer/jats-reference-parser.js

@@ -158,6 +158,7 @@ exports.jatsReferenceParser = {
                             const citation = (0, builders_1.buildCitation)('', rids);
                             modelNodes.push(citation);
                             crossReferenceNode.setAttribute('rid', citation._id);
+                            crossReferenceNode.setAttribute('data-reference-embedded-citation', JSON.stringify(citation.embeddedCitationItems));
                         }
                         else {
                             crossReferenceNode.removeAttribute('rid');

package/dist/cjs/lib/utils.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
+exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
 const bibliography_section_1 = require("../schema/nodes/bibliography_section");
 const graphical_abstract_section_1 = require("../schema/nodes/graphical_abstract_section");
 function* iterateChildren(node, recurse = false) {
@@ -61,6 +61,17 @@ const isInBibliographySection = ($pos) => {
     return false;
 };
 exports.isInBibliographySection = isInBibliographySection;
+const isAbstractsSectionNode = (node) => node.attrs.category === 'MPSectionCategory:abstracts';
+const isInAbstractsSection = ($pos) => {
+    for (let i = $pos.depth; i > 0; i--) {
+        const node = $pos.node(i);
+        if (isAbstractsSectionNode(node)) {
+            return true;
+        }
+    }
+    return false;
+};
+exports.isInAbstractsSection = isInAbstractsSection;
 const findParentNodeClosestToPos = ($pos, predicate) => {
     for (let i = $pos.depth; i > 0; i--) {
         const node = $pos.node(i);

package/dist/cjs/schema/nodes/bibliography_element.js

@@ -17,7 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.bibliographyElement = void 0;
 exports.bibliographyElement = {
-    content: '(bibliography_item | placeholder)+',
+    content: 'bibliography_item*',
     attrs: {
         id: { default: '' },
         contents: { default: '' },

package/dist/cjs/schema/nodes/citation.js

@@ -26,16 +26,22 @@ exports.citation = {
         contents: { default: '' },
         selectedText: { default: '' },
         dataTracked: { default: null },
+        embeddedCitationItems: { default: null },
     },
     parseDOM: [
         {
             tag: 'span.citation[data-reference-id]',
             getAttrs: (p) => {
                 const dom = p;
-                return {
+                const attr = {
                     rid: dom.getAttribute('data-reference-id'),
                     contents: dom.innerHTML,
                 };
+                const embeddedCitationAttr = dom.getAttribute('data-reference-embedded-citation');
+                if (embeddedCitationAttr) {
+                    attr['embeddedCitationItems'] = JSON.parse(embeddedCitationAttr);
+                }
+                return attr;
             },
         },
     ],
@@ -44,6 +50,9 @@ exports.citation = {
         const dom = document.createElement('span');
         dom.className = 'citation';
         dom.setAttribute('data-reference-id', citationNode.attrs.rid);
+        if (citationNode.attrs.embeddedCitationItems) {
+            dom.setAttribute('data-reference-embedded-citation', JSON.stringify(citationNode.attrs.embeddedCitationItems));
+        }
         dom.innerHTML = citationNode.attrs.contents;
         return dom;
     },

package/dist/cjs/transformer/decode.js

@@ -140,9 +140,6 @@ class Decoder {
                         return references.push(this.decode(referenceModel));
                     }
                 });
-                if (!references.length) {
-                    references.push(schema_1.schema.nodes.placeholder.createAndFill());
-                }
                 return schema_1.schema.nodes.bibliography_element.createChecked({
                     id: model._id,
                     contents: '',

package/dist/cjs/transformer/node-types.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isNodeType = exports.isSectionNodeType = exports.isElementNodeType = exports.isExecutableNodeType = exports.nodeTypesMap = void 0;
+exports.isMetaNode = exports.isNodeType = exports.isSectionNodeType = exports.isElementNodeType = exports.isExecutableNodeType = exports.nodeTypesMap = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const schema_1 = require("../schema");
 exports.nodeTypesMap = new Map([
@@ -66,3 +66,8 @@ const isSectionNodeType = (type) => (0, schema_1.hasGroup)(type, schema_1.GROUP_
 exports.isSectionNodeType = isSectionNodeType;
 const isNodeType = (node, type) => node.type === node.type.schema.nodes[type];
 exports.isNodeType = isNodeType;
+const isMetaNode = (nodeType) => nodeType === schema_1.schema.nodes.bibliography_item.name ||
+    nodeType === schema_1.schema.nodes.affiliation.name ||
+    nodeType === schema_1.schema.nodes.contributor.name ||
+    nodeType === schema_1.schema.nodes.manuscript.name;
+exports.isMetaNode = isMetaNode;

package/dist/es/jats/importer/jats-body-dom-parser.js

@@ -645,9 +645,13 @@ const nodes = [
         getAttrs: (node) => {
             var _a;
             const element = node;
+            const embeddedCitationAttr = element.getAttribute('data-reference-embedded-citation');
             return {
                 rid: element.getAttribute('rid'),
                 contents: (_a = element.textContent) === null || _a === void 0 ? void 0 : _a.trim(),
+                embeddedCitationItems: embeddedCitationAttr
+                    ? JSON.parse(embeddedCitationAttr)
+                    : null,
             };
         },
     },

package/dist/es/jats/importer/jats-reference-parser.js

@@ -155,6 +155,7 @@ export const jatsReferenceParser = {
                             const citation = buildCitation('', rids);
                             modelNodes.push(citation);
                             crossReferenceNode.setAttribute('rid', citation._id);
+                            crossReferenceNode.setAttribute('data-reference-embedded-citation', JSON.stringify(citation.embeddedCitationItems));
                         }
                         else {
                             crossReferenceNode.removeAttribute('rid');

package/dist/es/lib/utils.js

@@ -54,6 +54,16 @@ export const isInBibliographySection = ($pos) => {
     }
     return false;
 };
+const isAbstractsSectionNode = (node) => node.attrs.category === 'MPSectionCategory:abstracts';
+export const isInAbstractsSection = ($pos) => {
+    for (let i = $pos.depth; i > 0; i--) {
+        const node = $pos.node(i);
+        if (isAbstractsSectionNode(node)) {
+            return true;
+        }
+    }
+    return false;
+};
 export const findParentNodeClosestToPos = ($pos, predicate) => {
     for (let i = $pos.depth; i > 0; i--) {
         const node = $pos.node(i);

package/dist/es/schema/nodes/bibliography_element.js

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 export const bibliographyElement = {
-    content: '(bibliography_item | placeholder)+',
+    content: 'bibliography_item*',
     attrs: {
         id: { default: '' },
         contents: { default: '' },

package/dist/es/schema/nodes/citation.js

@@ -23,16 +23,22 @@ export const citation = {
         contents: { default: '' },
         selectedText: { default: '' },
         dataTracked: { default: null },
+        embeddedCitationItems: { default: null },
     },
     parseDOM: [
         {
             tag: 'span.citation[data-reference-id]',
             getAttrs: (p) => {
                 const dom = p;
-                return {
+                const attr = {
                     rid: dom.getAttribute('data-reference-id'),
                     contents: dom.innerHTML,
                 };
+                const embeddedCitationAttr = dom.getAttribute('data-reference-embedded-citation');
+                if (embeddedCitationAttr) {
+                    attr['embeddedCitationItems'] = JSON.parse(embeddedCitationAttr);
+                }
+                return attr;
             },
         },
     ],
@@ -41,6 +47,9 @@ export const citation = {
         const dom = document.createElement('span');
         dom.className = 'citation';
         dom.setAttribute('data-reference-id', citationNode.attrs.rid);
+        if (citationNode.attrs.embeddedCitationItems) {
+            dom.setAttribute('data-reference-embedded-citation', JSON.stringify(citationNode.attrs.embeddedCitationItems));
+        }
         dom.innerHTML = citationNode.attrs.contents;
         return dom;
     },

package/dist/es/transformer/decode.js

@@ -130,9 +130,6 @@ export class Decoder {
                         return references.push(this.decode(referenceModel));
                     }
                 });
-                if (!references.length) {
-                    references.push(schema.nodes.placeholder.createAndFill());
-                }
                 return schema.nodes.bibliography_element.createChecked({
                     id: model._id,
                     contents: '',

package/dist/es/transformer/node-types.js

@@ -59,3 +59,7 @@ export const isExecutableNodeType = (type) => hasGroup(type, GROUP_EXECUTABLE);
 export const isElementNodeType = (type) => hasGroup(type, GROUP_ELEMENT);
 export const isSectionNodeType = (type) => hasGroup(type, GROUP_SECTION);
 export const isNodeType = (node, type) => node.type === node.type.schema.nodes[type];
+export const isMetaNode = (nodeType) => nodeType === schema.nodes.bibliography_item.name ||
+    nodeType === schema.nodes.affiliation.name ||
+    nodeType === schema.nodes.contributor.name ||
+    nodeType === schema.nodes.manuscript.name;

package/dist/types/lib/utils.d.ts

@@ -19,6 +19,7 @@ export declare function iterateChildren(node: ManuscriptNode, recurse?: boolean)
 export declare const findNodePositions: (state: ManuscriptEditorState, predicate: (node: ManuscriptNode) => boolean) => number[];
 export declare const isInGraphicalAbstractSection: ($pos: ResolvedPos) => boolean;
 export declare const isInBibliographySection: ($pos: ResolvedPos) => boolean;
+export declare const isInAbstractsSection: ($pos: ResolvedPos) => boolean;
 export declare const findParentNodeClosestToPos: ($pos: ResolvedPos, predicate: (node: ProsemirrorNode) => boolean) => {
     pos: number;
     start: number;

package/dist/types/schema/nodes/citation.d.ts

@@ -18,6 +18,10 @@ import { ManuscriptNode } from '../types';
 interface Attrs {
     rid: string;
     contents: string;
+    embeddedCitationItems: {
+        id: string;
+        bibliographyItem: string;
+    }[];
 }
 export interface CitationNode extends ManuscriptNode {
     attrs: Attrs;

package/dist/types/transformer/node-types.d.ts

@@ -20,3 +20,4 @@ export declare const isExecutableNodeType: (type: ManuscriptNodeType) => boolean
 export declare const isElementNodeType: (type: ManuscriptNodeType) => boolean;
 export declare const isSectionNodeType: (type: ManuscriptNodeType) => boolean;
 export declare const isNodeType: <T extends import("prosemirror-model").Node>(node: ManuscriptNode, type: Nodes) => node is T;
+export declare const isMetaNode: (nodeType: string) => boolean;

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/transform",
   "description": "ProseMirror transformer for Manuscripts applications",
-  "version": "1.4.2",
+  "version": "1.4.4-LEAN-2737",
   "repository": "github:Atypon-OpenSource/manuscripts-transform",
   "license": "Apache-2.0",
   "main": "dist/cjs",