@manuscripts/transform 1.2.5 → 1.3.0

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Files changed (37) hide show
  1. package/dist/cjs/jats/importer/jats-body-dom-parser.js +33 -1
  2. package/dist/cjs/jats/importer/jats-body-transformations.js +14 -0
  3. package/dist/cjs/jats/importer/jats-comments.js +24 -0
  4. package/dist/cjs/jats/importer/jats-front-parser.js +0 -25
  5. package/dist/cjs/jats/importer/parse-jats-article.js +2 -6
  6. package/dist/cjs/jats/jats-exporter.js +5 -7
  7. package/dist/cjs/schema/index.js +2 -0
  8. package/dist/cjs/schema/nodes/keyword.js +1 -2
  9. package/dist/cjs/schema/nodes/keywords_element.js +2 -1
  10. package/dist/cjs/schema/nodes/keywords_group.js +48 -0
  11. package/dist/cjs/schema/nodes/keywords_section.js +1 -1
  12. package/dist/cjs/transformer/decode.js +29 -23
  13. package/dist/cjs/transformer/encode.js +6 -3
  14. package/dist/cjs/transformer/node-types.js +1 -0
  15. package/dist/cjs/transformer/object-types.js +2 -1
  16. package/dist/es/jats/importer/jats-body-dom-parser.js +33 -1
  17. package/dist/es/jats/importer/jats-body-transformations.js +14 -0
  18. package/dist/es/jats/importer/jats-comments.js +25 -1
  19. package/dist/es/jats/importer/jats-front-parser.js +1 -26
  20. package/dist/es/jats/importer/parse-jats-article.js +2 -6
  21. package/dist/es/jats/jats-exporter.js +5 -7
  22. package/dist/es/schema/index.js +2 -0
  23. package/dist/es/schema/nodes/keyword.js +1 -2
  24. package/dist/es/schema/nodes/keywords_element.js +2 -1
  25. package/dist/es/schema/nodes/keywords_group.js +44 -0
  26. package/dist/es/schema/nodes/keywords_section.js +1 -1
  27. package/dist/es/transformer/decode.js +29 -23
  28. package/dist/es/transformer/encode.js +6 -3
  29. package/dist/es/transformer/node-types.js +1 -0
  30. package/dist/es/transformer/object-types.js +1 -0
  31. package/dist/types/jats/importer/jats-body-transformations.d.ts +1 -0
  32. package/dist/types/jats/importer/jats-front-parser.d.ts +6 -11
  33. package/dist/types/schema/nodes/keywords_group.d.ts +26 -0
  34. package/dist/types/schema/types.d.ts +1 -1
  35. package/dist/types/transformer/decode.d.ts +1 -0
  36. package/dist/types/transformer/object-types.d.ts +2 -1
  37. package/package.json +1 -1
@@ -505,6 +505,22 @@ const nodes = [
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  };
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  },
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  },
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+ {
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+ tag: 'sec[sec-type="keywords"]',
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+ node: 'keywords_section',
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+ getAttrs: (node) => {
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+ const element = node;
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+ return {
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+ id: element.getAttribute('id'),
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+ category: (0, transformer_1.chooseSectionCategory)(element),
516
+ };
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+ },
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+ },
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+ {
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+ tag: 'kwd-group-list',
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+ context: 'keywords_section/',
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+ node: 'keywords_element',
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+ },
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  {
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  tag: 'sec',
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  node: 'section',
@@ -516,6 +532,22 @@ const nodes = [
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  };
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  },
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  },
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+ {
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+ tag: 'kwd-group',
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+ context: 'keywords_element/',
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+ node: 'keywords_group',
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+ getAttrs: (node) => {
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+ const element = node;
541
+ return {
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+ type: element.getAttribute('kwd-group-type'),
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+ };
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+ },
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+ },
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+ {
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+ tag: 'kwd',
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+ context: 'keywords_group//',
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+ node: 'keyword',
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+ },
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  {
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  tag: 'label',
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  context: 'section/',
@@ -568,7 +600,7 @@ const nodes = [
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  {
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  tag: 'title',
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  node: 'section_title',
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- context: 'section/|footnotes_section/|bibliography_section/',
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+ context: 'section/|footnotes_section/|bibliography_section/|keywords_section/',
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  },
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  {
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  tag: 'title',
@@ -307,4 +307,18 @@ exports.jatsBodyTransformations = {
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  paragraph === null || paragraph === void 0 ? void 0 : paragraph.replaceWith(parent);
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  });
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  },
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+ moveKeywordsToBody(document, body, createElement) {
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+ const keywordGroups = [...document.querySelectorAll('kwd-group')];
312
+ if (keywordGroups.length > 0) {
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+ const section = createElement('sec');
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+ section.setAttribute('sec-type', 'keywords');
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+ const title = createElement('title');
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+ title.textContent = 'Keywords';
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+ section.append(title);
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+ const kwdGroupsEl = createElement('kwd-group-list');
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+ kwdGroupsEl.append(keywordGroups[0]);
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+ section.append(kwdGroupsEl);
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+ body.prepend(section);
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+ }
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+ },
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  };
@@ -63,6 +63,21 @@ const insertToken = (doc, processingInstructionNode, authorQueriesMap) => {
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  return parentElement.insertBefore(tokenNode, processingInstructionNode);
64
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  }
65
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  };
66
+ const extractCommentsFromKeywords = (tokens, model, authorQueriesMap) => {
67
+ var _a;
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+ const commentAnnotations = [];
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+ const name = model.name;
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+ const filteredTokens = filterAndSortTokens(tokens, name);
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+ let content = name;
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+ for (const token of filteredTokens) {
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+ content = name.replace(token, '');
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+ const query = authorQueriesMap.get(token);
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+ const commentAnnotation = (0, transformer_1.buildComment)((_a = model.containedGroup) !== null && _a !== void 0 ? _a : (0, uuid_1.v4)(), `${query}`, undefined, [(0, transformer_1.buildContribution)(DEFAULT_PROFILE_ID)], DEFAULT_ANNOTATION_COLOR);
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+ model['name'] = content;
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+ commentAnnotations.push(commentAnnotation);
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+ }
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+ return commentAnnotations;
80
+ };
66
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  const createComments = (authorQueriesMap, manuscriptModels) => {
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  const tokens = [...authorQueriesMap.keys()];
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  const commentAnnotations = [];
@@ -71,10 +86,19 @@ const createComments = (authorQueriesMap, manuscriptModels) => {
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  const comments = addCommentsFromMarkedProcessingInstructions(tokens, model, authorQueriesMap);
72
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  commentAnnotations.push(...comments);
73
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  }
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+ else if ((0, transformer_1.isKeyword)(model)) {
90
+ const comments = extractCommentsFromKeywords(tokens, model, authorQueriesMap);
91
+ commentAnnotations.push(...comments);
92
+ }
74
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  }
75
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  return commentAnnotations;
76
95
  };
77
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  exports.createComments = createComments;
97
+ function filterAndSortTokens(tokens, content) {
98
+ return tokens
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+ .filter((token) => content.indexOf(token) >= 0)
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+ .sort((a, b) => content.indexOf(a) - content.indexOf(b));
101
+ }
78
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  const addCommentsFromMarkedProcessingInstructions = (tokens, model, authorQueriesMap) => {
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  const commentAnnotations = [];
80
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  for (const field of ['contents', 'caption', 'title']) {
@@ -68,31 +68,6 @@ exports.jatsFrontParser = {
68
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  }
69
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  return (0, jats_journal_meta_parser_1.parseJournalMeta)(journalMeta);
70
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  },
71
- parseKeywords(keywordGroupNodes) {
72
- var _a, _b;
73
- if (!keywordGroupNodes) {
74
- return { groups: [], keywords: [] };
75
- }
76
- let keywordPriority = 1;
77
- const keywordGroups = { groups: [], keywords: [] };
78
- for (const keywordGroupNode of keywordGroupNodes) {
79
- const manuscriptKeywordGroup = (0, builders_1.buildKeywordGroup)({
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- title: ((_a = keywordGroupNode.querySelector('title')) === null || _a === void 0 ? void 0 : _a.textContent) || undefined,
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- label: ((_b = keywordGroupNode.querySelector('label')) === null || _b === void 0 ? void 0 : _b.textContent) || undefined,
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- type: keywordGroupNode.getAttribute('kwd-group-type') || undefined,
83
- });
84
- keywordGroups.groups.push(manuscriptKeywordGroup);
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- for (const keywordNode of keywordGroupNode.querySelectorAll('kwd')) {
86
- if (keywordNode.textContent) {
87
- const keyword = (0, builders_1.buildKeyword)(keywordNode.textContent);
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- keyword.priority = keywordPriority++;
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- keyword.containedGroup = manuscriptKeywordGroup._id;
90
- keywordGroups.keywords.push(keyword);
91
- }
92
- }
93
- }
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- return keywordGroups;
95
- },
96
71
  parseDates(historyNode) {
97
72
  if (!historyNode) {
98
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  return undefined;
@@ -54,9 +54,6 @@ const parseJATSFront = async (front) => {
54
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  const manuscriptMeta = Object.assign({ title: title ? inlineContentsFromJATSTitle(title) : undefined, subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined, runningTitle: runningTitle
55
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  ? inlineContentsFromJATSTitle(runningTitle)
56
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  : undefined }, jats_front_parser_1.jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
57
- const keywordGroupNodes = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelectorAll('kwd-group');
58
- const { keywords, groups: keywordGroups } = jats_front_parser_1.jatsFrontParser.parseKeywords(keywordGroupNodes);
59
- const manuscript_keywordIDs = keywords.length > 0 ? keywords.map((k) => k._id) : undefined;
60
57
  const { affiliations, affiliationIDs } = jats_front_parser_1.jatsFrontParser.parseAffiliationNodes([
61
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  ...front.querySelectorAll('article-meta > contrib-group > aff'),
62
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  ]);
@@ -73,14 +70,12 @@ const parseJATSFront = async (front) => {
73
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  const supplements = jats_front_parser_1.jatsFrontParser.parseSupplements([
74
71
  ...front.querySelectorAll('article-meta > supplementary-material'),
75
72
  ]);
76
- const manuscript = Object.assign(Object.assign(Object.assign(Object.assign({}, (0, builders_1.buildManuscript)()), manuscriptMeta), { keywordIDs: manuscript_keywordIDs }), history);
73
+ const manuscript = Object.assign(Object.assign(Object.assign({}, (0, builders_1.buildManuscript)()), manuscriptMeta), history);
77
74
  return {
78
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  models: generateModelIDs([
79
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  manuscript,
80
- ...keywords,
81
77
  ...affiliations,
82
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  ...authors,
83
- ...keywordGroups,
84
79
  ...footnotes,
85
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  ...correspondingList,
86
81
  journal,
@@ -120,6 +115,7 @@ const parseJATSBody = (document, body, bibliographyItems, refModels, referenceId
120
115
  jats_body_transformations_1.jatsBodyTransformations.moveCaptionsToEnd(body);
121
116
  jats_body_transformations_1.jatsBodyTransformations.moveTableFooterToEnd(body);
122
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  jats_body_transformations_1.jatsBodyTransformations.moveBlockNodesFromParagraph(document, body, createElement);
118
+ jats_body_transformations_1.jatsBodyTransformations.moveKeywordsToBody(document, body, createElement);
123
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  const node = jats_body_dom_parser_1.jatsBodyDOMParser.parse(body);
124
120
  if (!node.firstChild) {
125
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  throw new Error('No content was parsed from the JATS article body');
@@ -400,9 +400,7 @@ class JATSExporter {
400
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  if (history.childElementCount) {
401
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  articleMeta.appendChild(history);
402
402
  }
403
- if (manuscript.keywordIDs) {
404
- this.buildKeywords(articleMeta, manuscript.keywordIDs);
405
- }
403
+ this.buildKeywords(articleMeta);
406
404
  let countingElements = [];
407
405
  if (manuscript.genericCounts) {
408
406
  const elements = manuscript.genericCounts.map((el) => {
@@ -626,6 +624,7 @@ class JATSExporter {
626
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  bibliography_element: () => '',
627
625
  bibliography_item: () => '',
628
626
  comment_list: () => '',
627
+ keywords_group: () => '',
629
628
  bibliography_section: (node) => [
630
629
  'ref-list',
631
630
  { id: normalizeID(node.attrs.id) },
@@ -1562,10 +1561,8 @@ class JATSExporter {
1562
1561
  return name;
1563
1562
  };
1564
1563
  }
1565
- buildKeywords(articleMeta, keywordIDs) {
1566
- const keywords = keywordIDs
1567
- .map((id) => this.modelMap.get(id))
1568
- .filter((model) => model && model.name);
1564
+ buildKeywords(articleMeta) {
1565
+ const keywords = [...this.modelMap.values()].filter((model) => model.objectType === json_schema_1.ObjectTypes.Keyword);
1569
1566
  const keywordGroups = new Map();
1570
1567
  keywords.forEach((keyword) => {
1571
1568
  const containedGroup = keyword.containedGroup || '';
@@ -1599,6 +1596,7 @@ class JATSExporter {
1599
1596
  kwd.textContent = keyword.name;
1600
1597
  kwdGroup.appendChild(kwd);
1601
1598
  }
1599
+ articleMeta.appendChild(kwdGroup);
1602
1600
  }
1603
1601
  }
1604
1602
  }
@@ -59,6 +59,7 @@ const inline_equation_1 = require("./nodes/inline_equation");
59
59
  const inline_footnote_1 = require("./nodes/inline_footnote");
60
60
  const keyword_1 = require("./nodes/keyword");
61
61
  const keywords_element_1 = require("./nodes/keywords_element");
62
+ const keywords_group_1 = require("./nodes/keywords_group");
62
63
  const keywords_section_1 = require("./nodes/keywords_section");
63
64
  const link_1 = require("./nodes/link");
64
65
  const list_1 = require("./nodes/list");
@@ -173,6 +174,7 @@ exports.schema = new prosemirror_model_1.Schema({
173
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  keyword: keyword_1.keyword,
174
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  keywords_element: keywords_element_1.keywordsElement,
175
176
  keywords_section: keywords_section_1.keywordsSection,
177
+ keywords_group: keywords_group_1.keywordsGroup,
176
178
  link: link_1.link,
177
179
  list_item: list_1.listItem,
178
180
  listing: listing_1.listing,
@@ -25,8 +25,7 @@ exports.keyword = {
25
25
  dataTracked: { default: null },
26
26
  comments: { default: null },
27
27
  },
28
- inline: true,
29
- group: 'inline',
28
+ group: 'block',
30
29
  selectable: false,
31
30
  parseDOM: [
32
31
  {
@@ -18,11 +18,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.keywordsElement = void 0;
19
19
  exports.keywordsElement = {
20
20
  atom: true,
21
- content: 'keyword*',
21
+ content: 'keywords_group*',
22
22
  attrs: {
23
23
  id: { default: '' },
24
24
  contents: { default: '' },
25
25
  paragraphStyle: { default: '' },
26
+ type: { default: '' },
26
27
  dataTracked: { default: null },
27
28
  },
28
29
  group: 'block element',
@@ -0,0 +1,48 @@
1
+ "use strict";
2
+ /*!
3
+ * © 2019 Atypon Systems LLC
4
+ *
5
+ * Licensed under the Apache License, Version 2.0 (the "License");
6
+ * you may not use this file except in compliance with the License.
7
+ * You may obtain a copy of the License at
8
+ *
9
+ * http://www.apache.org/licenses/LICENSE-2.0
10
+ *
11
+ * Unless required by applicable law or agreed to in writing, software
12
+ * distributed under the License is distributed on an "AS IS" BASIS,
13
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14
+ * See the License for the specific language governing permissions and
15
+ * limitations under the License.
16
+ */
17
+ Object.defineProperty(exports, "__esModule", { value: true });
18
+ exports.isKeywordsGroupNode = exports.keywordsGroup = void 0;
19
+ exports.keywordsGroup = {
20
+ content: 'keyword*',
21
+ attrs: {
22
+ id: { default: '' },
23
+ type: { default: '' },
24
+ dataTracked: { default: null },
25
+ },
26
+ group: 'block',
27
+ selectable: false,
28
+ parseDOM: [
29
+ {
30
+ tag: 'div.keywords',
31
+ },
32
+ ],
33
+ toDOM: (node) => {
34
+ const keywordsGroupNode = node;
35
+ return [
36
+ 'div',
37
+ {
38
+ id: keywordsGroupNode.attrs.id,
39
+ class: 'keywords',
40
+ spellcheck: 'false',
41
+ contenteditable: false,
42
+ },
43
+ 0,
44
+ ];
45
+ },
46
+ };
47
+ const isKeywordsGroupNode = (node) => node.type === node.type.schema.nodes.keywords_group;
48
+ exports.isKeywordsGroupNode = isKeywordsGroupNode;
@@ -17,7 +17,7 @@
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
18
  exports.isKeywordsSectionNode = exports.keywordsSection = void 0;
19
19
  exports.keywordsSection = {
20
- content: 'section_title_plain (keywords_element | placeholder_element)',
20
+ content: 'section_title (keywords_element | placeholder_element)',
21
21
  attrs: {
22
22
  id: { default: '' },
23
23
  dataTracked: { default: null },
@@ -275,11 +275,11 @@ class Decoder {
275
275
  },
276
276
  [json_schema_1.ObjectTypes.KeywordsElement]: (data) => {
277
277
  const model = data;
278
- const keywords = this.getKeywords();
278
+ const keywordGroups = this.getKeywordGroups();
279
279
  return schema_1.schema.nodes.keywords_element.create({
280
280
  id: model._id,
281
281
  paragraphStyle: model.paragraphStyle,
282
- }, keywords);
282
+ }, keywordGroups);
283
283
  },
284
284
  [json_schema_1.ObjectTypes.Keyword]: (data) => {
285
285
  const model = data;
@@ -426,9 +426,7 @@ class Decoder {
426
426
  const elementNodes = elements
427
427
  .map(this.decode)
428
428
  .filter(exports.isManuscriptNode);
429
- const sectionTitle = isKeywordsSection
430
- ? 'section_title_plain'
431
- : 'section_title';
429
+ const sectionTitle = 'section_title';
432
430
  const sectionTitleNode = model.title
433
431
  ? this.parseContents(model.title, 'h1', this.getComments(model), {
434
432
  topNode: schema_1.schema.nodes[sectionTitle].create(),
@@ -572,19 +570,6 @@ class Decoder {
572
570
  id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
573
571
  }));
574
572
  }
575
- const keywordsSection = getSections(this.modelMap).filter((section) => section.category === 'MPSectionCategory:keywords');
576
- const keywords = this.getKeywords();
577
- if (keywordsSection.length === 0 && keywords.length > 0) {
578
- const keywordsSection = schema_1.schema.nodes.keywords_section.createAndFill({
579
- id: (0, id_1.generateNodeID)(schema_1.schema.nodes.keywords_section),
580
- }, [
581
- schema_1.schema.nodes.section_title_plain.create({}, schema_1.schema.text('Keywords')),
582
- schema_1.schema.nodes.keywords_element.create({
583
- id: (0, id_1.generateNodeID)(schema_1.schema.nodes.keywords_element),
584
- }, keywords),
585
- ]);
586
- rootSectionNodes.unshift(keywordsSection);
587
- }
588
573
  const contents = rootSectionNodes;
589
574
  if (this.comments.size) {
590
575
  const comments = schema_1.schema.nodes.comment_list.createAndFill({
@@ -632,17 +617,16 @@ class Decoder {
632
617
  }
633
618
  return parser.parse(template.content.firstElementChild, options);
634
619
  };
635
- this.getKeywords = () => {
620
+ this.getKeywords = (id) => {
636
621
  const keywordsOfKind = [];
637
- for (const model of this.modelMap.values()) {
638
- const commentNodes = this.createCommentsNode(model);
639
- commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
622
+ const keywordsByGroup = [...this.modelMap.values()].filter((m) => m.objectType === json_schema_1.ObjectTypes.Keyword &&
623
+ m.containedGroup === id);
624
+ for (const model of keywordsByGroup) {
640
625
  if (isKeyword(model)) {
641
626
  const keyword = this.parseContents(model.name || '', 'div', this.getComments(model), {
642
627
  topNode: schema_1.schema.nodes.keyword.create({
643
628
  id: model._id,
644
629
  contents: model.name,
645
- comments: commentNodes.map((c) => c.attrs.id),
646
630
  }),
647
631
  });
648
632
  keywordsOfKind.push(keyword);
@@ -689,5 +673,27 @@ class Decoder {
689
673
  this.modelMap = modelMap;
690
674
  this.allowMissingElements = allowMissingElements;
691
675
  }
676
+ getKeywordGroups() {
677
+ const kwdGroupNodes = [];
678
+ const kwdGroupsModels = [
679
+ ...this.modelMap.values(),
680
+ ].filter((model) => model.objectType === json_schema_1.ObjectTypes.KeywordGroup);
681
+ if (kwdGroupsModels.length > 0) {
682
+ for (const kwdGroupModel of kwdGroupsModels) {
683
+ const keywords = this.getKeywords(kwdGroupModel._id);
684
+ const commentNodes = this.createCommentsNode(kwdGroupModel);
685
+ commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
686
+ const contents = [];
687
+ contents.push(...keywords);
688
+ const kwdGroupNode = schema_1.schema.nodes.keywords_group.create({
689
+ id: kwdGroupModel._id,
690
+ type: kwdGroupModel.type,
691
+ comments: commentNodes.map((c) => c.attrs.id),
692
+ }, contents);
693
+ kwdGroupNodes.push(kwdGroupNode);
694
+ }
695
+ }
696
+ return kwdGroupNodes;
697
+ }
692
698
  }
693
699
  exports.Decoder = Decoder;
@@ -410,18 +410,21 @@ const encoders = {
410
410
  SVGGlyphs: svgDefs(node.attrs.SVGRepresentation),
411
411
  }),
412
412
  keyword: (node, parent) => ({
413
- containerID: parent.attrs.id,
413
+ containedGroup: parent.attrs.id,
414
414
  name: keywordContents(node),
415
415
  }),
416
416
  keywords_element: (node) => ({
417
- contents: elementContents(node),
417
+ contents: '<div></div>',
418
418
  elementType: 'div',
419
419
  paragraphStyle: node.attrs.paragraphStyle || undefined,
420
420
  }),
421
+ keywords_group: (node) => ({
422
+ type: node.attrs.type,
423
+ }),
421
424
  keywords_section: (node, parent, path, priority) => ({
422
425
  category: (0, section_category_1.buildSectionCategory)(node),
423
426
  priority: priority.value++,
424
- title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title_plain),
427
+ title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title),
425
428
  path: path.concat([node.attrs.id]),
426
429
  elementIDs: childElements(node)
427
430
  .map((childNode) => childNode.attrs.id)
@@ -41,6 +41,7 @@ exports.nodeTypesMap = new Map([
41
41
  [schema_1.schema.nodes.keyword, json_schema_1.ObjectTypes.Keyword],
42
42
  [schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
43
43
  [schema_1.schema.nodes.keywords_section, json_schema_1.ObjectTypes.Section],
44
+ [schema_1.schema.nodes.keywords_group, json_schema_1.ObjectTypes.KeywordGroup],
44
45
  [schema_1.schema.nodes.listing, json_schema_1.ObjectTypes.Listing],
45
46
  [schema_1.schema.nodes.listing_element, json_schema_1.ObjectTypes.ListingElement],
46
47
  [schema_1.schema.nodes.manuscript, json_schema_1.ObjectTypes.Manuscript],
@@ -15,7 +15,7 @@
15
15
  * limitations under the License.
16
16
  */
17
17
  Object.defineProperty(exports, "__esModule", { value: true });
18
- exports.isCommentAnnotation = exports.isUserProfile = exports.isTable = exports.isManuscript = exports.isFigure = exports.hasObjectType = exports.isManuscriptModel = exports.manuscriptObjects = exports.elementObjects = exports.ExtraObjectTypes = void 0;
18
+ exports.isKeyword = exports.isCommentAnnotation = exports.isUserProfile = exports.isTable = exports.isManuscript = exports.isFigure = exports.hasObjectType = exports.isManuscriptModel = exports.manuscriptObjects = exports.elementObjects = exports.ExtraObjectTypes = void 0;
19
19
  const json_schema_1 = require("@manuscripts/json-schema");
20
20
  var ExtraObjectTypes;
21
21
  (function (ExtraObjectTypes) {
@@ -55,3 +55,4 @@ exports.isManuscript = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.Manu
55
55
  exports.isTable = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.Table);
56
56
  exports.isUserProfile = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.UserProfile);
57
57
  exports.isCommentAnnotation = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.CommentAnnotation);
58
+ exports.isKeyword = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.Keyword);
@@ -499,6 +499,22 @@ const nodes = [
499
499
  };
500
500
  },
501
501
  },
502
+ {
503
+ tag: 'sec[sec-type="keywords"]',
504
+ node: 'keywords_section',
505
+ getAttrs: (node) => {
506
+ const element = node;
507
+ return {
508
+ id: element.getAttribute('id'),
509
+ category: chooseSectionCategory(element),
510
+ };
511
+ },
512
+ },
513
+ {
514
+ tag: 'kwd-group-list',
515
+ context: 'keywords_section/',
516
+ node: 'keywords_element',
517
+ },
502
518
  {
503
519
  tag: 'sec',
504
520
  node: 'section',
@@ -510,6 +526,22 @@ const nodes = [
510
526
  };
511
527
  },
512
528
  },
529
+ {
530
+ tag: 'kwd-group',
531
+ context: 'keywords_element/',
532
+ node: 'keywords_group',
533
+ getAttrs: (node) => {
534
+ const element = node;
535
+ return {
536
+ type: element.getAttribute('kwd-group-type'),
537
+ };
538
+ },
539
+ },
540
+ {
541
+ tag: 'kwd',
542
+ context: 'keywords_group//',
543
+ node: 'keyword',
544
+ },
513
545
  {
514
546
  tag: 'label',
515
547
  context: 'section/',
@@ -562,7 +594,7 @@ const nodes = [
562
594
  {
563
595
  tag: 'title',
564
596
  node: 'section_title',
565
- context: 'section/|footnotes_section/|bibliography_section/',
597
+ context: 'section/|footnotes_section/|bibliography_section/|keywords_section/',
566
598
  },
567
599
  {
568
600
  tag: 'title',
@@ -304,4 +304,18 @@ export const jatsBodyTransformations = {
304
304
  paragraph === null || paragraph === void 0 ? void 0 : paragraph.replaceWith(parent);
305
305
  });
306
306
  },
307
+ moveKeywordsToBody(document, body, createElement) {
308
+ const keywordGroups = [...document.querySelectorAll('kwd-group')];
309
+ if (keywordGroups.length > 0) {
310
+ const section = createElement('sec');
311
+ section.setAttribute('sec-type', 'keywords');
312
+ const title = createElement('title');
313
+ title.textContent = 'Keywords';
314
+ section.append(title);
315
+ const kwdGroupsEl = createElement('kwd-group-list');
316
+ kwdGroupsEl.append(keywordGroups[0]);
317
+ section.append(kwdGroupsEl);
318
+ body.prepend(section);
319
+ }
320
+ },
307
321
  };
@@ -14,7 +14,7 @@
14
14
  * limitations under the License.
15
15
  */
16
16
  import { v4 as uuidv4 } from 'uuid';
17
- import { buildComment, buildContribution, isCommentAnnotation, isHighlightableModel, } from '../../transformer';
17
+ import { buildComment, buildContribution, isCommentAnnotation, isHighlightableModel, isKeyword, } from '../../transformer';
18
18
  const DEFAULT_ANNOTATION_COLOR = 'rgb(250, 224, 150)';
19
19
  const DEFAULT_PROFILE_ID = 'MPUserProfile:0000000000000000000000000000000000000001';
20
20
  export const parseProcessingInstruction = (node) => {
@@ -58,6 +58,21 @@ const insertToken = (doc, processingInstructionNode, authorQueriesMap) => {
58
58
  return parentElement.insertBefore(tokenNode, processingInstructionNode);
59
59
  }
60
60
  };
61
+ const extractCommentsFromKeywords = (tokens, model, authorQueriesMap) => {
62
+ var _a;
63
+ const commentAnnotations = [];
64
+ const name = model.name;
65
+ const filteredTokens = filterAndSortTokens(tokens, name);
66
+ let content = name;
67
+ for (const token of filteredTokens) {
68
+ content = name.replace(token, '');
69
+ const query = authorQueriesMap.get(token);
70
+ const commentAnnotation = buildComment((_a = model.containedGroup) !== null && _a !== void 0 ? _a : uuidv4(), `${query}`, undefined, [buildContribution(DEFAULT_PROFILE_ID)], DEFAULT_ANNOTATION_COLOR);
71
+ model['name'] = content;
72
+ commentAnnotations.push(commentAnnotation);
73
+ }
74
+ return commentAnnotations;
75
+ };
61
76
  export const createComments = (authorQueriesMap, manuscriptModels) => {
62
77
  const tokens = [...authorQueriesMap.keys()];
63
78
  const commentAnnotations = [];
@@ -66,9 +81,18 @@ export const createComments = (authorQueriesMap, manuscriptModels) => {
66
81
  const comments = addCommentsFromMarkedProcessingInstructions(tokens, model, authorQueriesMap);
67
82
  commentAnnotations.push(...comments);
68
83
  }
84
+ else if (isKeyword(model)) {
85
+ const comments = extractCommentsFromKeywords(tokens, model, authorQueriesMap);
86
+ commentAnnotations.push(...comments);
87
+ }
69
88
  }
70
89
  return commentAnnotations;
71
90
  };
91
+ function filterAndSortTokens(tokens, content) {
92
+ return tokens
93
+ .filter((token) => content.indexOf(token) >= 0)
94
+ .sort((a, b) => content.indexOf(a) - content.indexOf(b));
95
+ }
72
96
  const addCommentsFromMarkedProcessingInstructions = (tokens, model, authorQueriesMap) => {
73
97
  const commentAnnotations = [];
74
98
  for (const field of ['contents', 'caption', 'title']) {
@@ -14,7 +14,7 @@
14
14
  * limitations under the License.
15
15
  */
16
16
  import debug from 'debug';
17
- import { buildAffiliation, buildBibliographicName, buildContributor, buildCorresp, buildFootnote, buildKeyword, buildKeywordGroup, buildSupplementaryMaterial, } from '../../transformer/builders';
17
+ import { buildAffiliation, buildBibliographicName, buildContributor, buildCorresp, buildFootnote, buildSupplementaryMaterial, } from '../../transformer/builders';
18
18
  import { parseJournalMeta } from './jats-journal-meta-parser';
19
19
  const warn = debug('manuscripts-transform');
20
20
  const XLINK_NAMESPACE = 'http://www.w3.org/1999/xlink';
@@ -62,31 +62,6 @@ export const jatsFrontParser = {
62
62
  }
63
63
  return parseJournalMeta(journalMeta);
64
64
  },
65
- parseKeywords(keywordGroupNodes) {
66
- var _a, _b;
67
- if (!keywordGroupNodes) {
68
- return { groups: [], keywords: [] };
69
- }
70
- let keywordPriority = 1;
71
- const keywordGroups = { groups: [], keywords: [] };
72
- for (const keywordGroupNode of keywordGroupNodes) {
73
- const manuscriptKeywordGroup = buildKeywordGroup({
74
- title: ((_a = keywordGroupNode.querySelector('title')) === null || _a === void 0 ? void 0 : _a.textContent) || undefined,
75
- label: ((_b = keywordGroupNode.querySelector('label')) === null || _b === void 0 ? void 0 : _b.textContent) || undefined,
76
- type: keywordGroupNode.getAttribute('kwd-group-type') || undefined,
77
- });
78
- keywordGroups.groups.push(manuscriptKeywordGroup);
79
- for (const keywordNode of keywordGroupNode.querySelectorAll('kwd')) {
80
- if (keywordNode.textContent) {
81
- const keyword = buildKeyword(keywordNode.textContent);
82
- keyword.priority = keywordPriority++;
83
- keyword.containedGroup = manuscriptKeywordGroup._id;
84
- keywordGroups.keywords.push(keyword);
85
- }
86
- }
87
- }
88
- return keywordGroups;
89
- },
90
65
  parseDates(historyNode) {
91
66
  if (!historyNode) {
92
67
  return undefined;
@@ -51,9 +51,6 @@ export const parseJATSFront = async (front) => {
51
51
  const manuscriptMeta = Object.assign({ title: title ? inlineContentsFromJATSTitle(title) : undefined, subtitle: subtitle ? inlineContentsFromJATSTitle(subtitle) : undefined, runningTitle: runningTitle
52
52
  ? inlineContentsFromJATSTitle(runningTitle)
53
53
  : undefined }, jatsFrontParser.parseCounts(articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelector('counts')));
54
- const keywordGroupNodes = articleMeta === null || articleMeta === void 0 ? void 0 : articleMeta.querySelectorAll('kwd-group');
55
- const { keywords, groups: keywordGroups } = jatsFrontParser.parseKeywords(keywordGroupNodes);
56
- const manuscript_keywordIDs = keywords.length > 0 ? keywords.map((k) => k._id) : undefined;
57
54
  const { affiliations, affiliationIDs } = jatsFrontParser.parseAffiliationNodes([
58
55
  ...front.querySelectorAll('article-meta > contrib-group > aff'),
59
56
  ]);
@@ -70,14 +67,12 @@ export const parseJATSFront = async (front) => {
70
67
  const supplements = jatsFrontParser.parseSupplements([
71
68
  ...front.querySelectorAll('article-meta > supplementary-material'),
72
69
  ]);
73
- const manuscript = Object.assign(Object.assign(Object.assign(Object.assign({}, buildManuscript()), manuscriptMeta), { keywordIDs: manuscript_keywordIDs }), history);
70
+ const manuscript = Object.assign(Object.assign(Object.assign({}, buildManuscript()), manuscriptMeta), history);
74
71
  return {
75
72
  models: generateModelIDs([
76
73
  manuscript,
77
- ...keywords,
78
74
  ...affiliations,
79
75
  ...authors,
80
- ...keywordGroups,
81
76
  ...footnotes,
82
77
  ...correspondingList,
83
78
  journal,
@@ -115,6 +110,7 @@ export const parseJATSBody = (document, body, bibliographyItems, refModels, refe
115
110
  jatsBodyTransformations.moveCaptionsToEnd(body);
116
111
  jatsBodyTransformations.moveTableFooterToEnd(body);
117
112
  jatsBodyTransformations.moveBlockNodesFromParagraph(document, body, createElement);
113
+ jatsBodyTransformations.moveKeywordsToBody(document, body, createElement);
118
114
  const node = jatsBodyDOMParser.parse(body);
119
115
  if (!node.firstChild) {
120
116
  throw new Error('No content was parsed from the JATS article body');
@@ -393,9 +393,7 @@ export class JATSExporter {
393
393
  if (history.childElementCount) {
394
394
  articleMeta.appendChild(history);
395
395
  }
396
- if (manuscript.keywordIDs) {
397
- this.buildKeywords(articleMeta, manuscript.keywordIDs);
398
- }
396
+ this.buildKeywords(articleMeta);
399
397
  let countingElements = [];
400
398
  if (manuscript.genericCounts) {
401
399
  const elements = manuscript.genericCounts.map((el) => {
@@ -619,6 +617,7 @@ export class JATSExporter {
619
617
  bibliography_element: () => '',
620
618
  bibliography_item: () => '',
621
619
  comment_list: () => '',
620
+ keywords_group: () => '',
622
621
  bibliography_section: (node) => [
623
622
  'ref-list',
624
623
  { id: normalizeID(node.attrs.id) },
@@ -1555,10 +1554,8 @@ export class JATSExporter {
1555
1554
  return name;
1556
1555
  };
1557
1556
  }
1558
- buildKeywords(articleMeta, keywordIDs) {
1559
- const keywords = keywordIDs
1560
- .map((id) => this.modelMap.get(id))
1561
- .filter((model) => model && model.name);
1557
+ buildKeywords(articleMeta) {
1558
+ const keywords = [...this.modelMap.values()].filter((model) => model.objectType === ObjectTypes.Keyword);
1562
1559
  const keywordGroups = new Map();
1563
1560
  keywords.forEach((keyword) => {
1564
1561
  const containedGroup = keyword.containedGroup || '';
@@ -1592,6 +1589,7 @@ export class JATSExporter {
1592
1589
  kwd.textContent = keyword.name;
1593
1590
  kwdGroup.appendChild(kwd);
1594
1591
  }
1592
+ articleMeta.appendChild(kwdGroup);
1595
1593
  }
1596
1594
  }
1597
1595
  }
@@ -42,6 +42,7 @@ import { inlineEquation } from './nodes/inline_equation';
42
42
  import { inlineFootnote } from './nodes/inline_footnote';
43
43
  import { keyword } from './nodes/keyword';
44
44
  import { keywordsElement } from './nodes/keywords_element';
45
+ import { keywordsGroup } from './nodes/keywords_group';
45
46
  import { keywordsSection } from './nodes/keywords_section';
46
47
  import { link } from './nodes/link';
47
48
  import { bulletList, listItem, orderedList } from './nodes/list';
@@ -156,6 +157,7 @@ export const schema = new Schema({
156
157
  keyword,
157
158
  keywords_element: keywordsElement,
158
159
  keywords_section: keywordsSection,
160
+ keywords_group: keywordsGroup,
159
161
  link,
160
162
  list_item: listItem,
161
163
  listing,
@@ -22,8 +22,7 @@ export const keyword = {
22
22
  dataTracked: { default: null },
23
23
  comments: { default: null },
24
24
  },
25
- inline: true,
26
- group: 'inline',
25
+ group: 'block',
27
26
  selectable: false,
28
27
  parseDOM: [
29
28
  {
@@ -15,11 +15,12 @@
15
15
  */
16
16
  export const keywordsElement = {
17
17
  atom: true,
18
- content: 'keyword*',
18
+ content: 'keywords_group*',
19
19
  attrs: {
20
20
  id: { default: '' },
21
21
  contents: { default: '' },
22
22
  paragraphStyle: { default: '' },
23
+ type: { default: '' },
23
24
  dataTracked: { default: null },
24
25
  },
25
26
  group: 'block element',
@@ -0,0 +1,44 @@
1
+ /*!
2
+ * © 2019 Atypon Systems LLC
3
+ *
4
+ * Licensed under the Apache License, Version 2.0 (the "License");
5
+ * you may not use this file except in compliance with the License.
6
+ * You may obtain a copy of the License at
7
+ *
8
+ * http://www.apache.org/licenses/LICENSE-2.0
9
+ *
10
+ * Unless required by applicable law or agreed to in writing, software
11
+ * distributed under the License is distributed on an "AS IS" BASIS,
12
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13
+ * See the License for the specific language governing permissions and
14
+ * limitations under the License.
15
+ */
16
+ export const keywordsGroup = {
17
+ content: 'keyword*',
18
+ attrs: {
19
+ id: { default: '' },
20
+ type: { default: '' },
21
+ dataTracked: { default: null },
22
+ },
23
+ group: 'block',
24
+ selectable: false,
25
+ parseDOM: [
26
+ {
27
+ tag: 'div.keywords',
28
+ },
29
+ ],
30
+ toDOM: (node) => {
31
+ const keywordsGroupNode = node;
32
+ return [
33
+ 'div',
34
+ {
35
+ id: keywordsGroupNode.attrs.id,
36
+ class: 'keywords',
37
+ spellcheck: 'false',
38
+ contenteditable: false,
39
+ },
40
+ 0,
41
+ ];
42
+ },
43
+ };
44
+ export const isKeywordsGroupNode = (node) => node.type === node.type.schema.nodes.keywords_group;
@@ -14,7 +14,7 @@
14
14
  * limitations under the License.
15
15
  */
16
16
  export const keywordsSection = {
17
- content: 'section_title_plain (keywords_element | placeholder_element)',
17
+ content: 'section_title (keywords_element | placeholder_element)',
18
18
  attrs: {
19
19
  id: { default: '' },
20
20
  dataTracked: { default: null },
@@ -265,11 +265,11 @@ export class Decoder {
265
265
  },
266
266
  [ObjectTypes.KeywordsElement]: (data) => {
267
267
  const model = data;
268
- const keywords = this.getKeywords();
268
+ const keywordGroups = this.getKeywordGroups();
269
269
  return schema.nodes.keywords_element.create({
270
270
  id: model._id,
271
271
  paragraphStyle: model.paragraphStyle,
272
- }, keywords);
272
+ }, keywordGroups);
273
273
  },
274
274
  [ObjectTypes.Keyword]: (data) => {
275
275
  const model = data;
@@ -416,9 +416,7 @@ export class Decoder {
416
416
  const elementNodes = elements
417
417
  .map(this.decode)
418
418
  .filter(isManuscriptNode);
419
- const sectionTitle = isKeywordsSection
420
- ? 'section_title_plain'
421
- : 'section_title';
419
+ const sectionTitle = 'section_title';
422
420
  const sectionTitleNode = model.title
423
421
  ? this.parseContents(model.title, 'h1', this.getComments(model), {
424
422
  topNode: schema.nodes[sectionTitle].create(),
@@ -562,19 +560,6 @@ export class Decoder {
562
560
  id: generateNodeID(schema.nodes.section),
563
561
  }));
564
562
  }
565
- const keywordsSection = getSections(this.modelMap).filter((section) => section.category === 'MPSectionCategory:keywords');
566
- const keywords = this.getKeywords();
567
- if (keywordsSection.length === 0 && keywords.length > 0) {
568
- const keywordsSection = schema.nodes.keywords_section.createAndFill({
569
- id: generateNodeID(schema.nodes.keywords_section),
570
- }, [
571
- schema.nodes.section_title_plain.create({}, schema.text('Keywords')),
572
- schema.nodes.keywords_element.create({
573
- id: generateNodeID(schema.nodes.keywords_element),
574
- }, keywords),
575
- ]);
576
- rootSectionNodes.unshift(keywordsSection);
577
- }
578
563
  const contents = rootSectionNodes;
579
564
  if (this.comments.size) {
580
565
  const comments = schema.nodes.comment_list.createAndFill({
@@ -622,17 +607,16 @@ export class Decoder {
622
607
  }
623
608
  return parser.parse(template.content.firstElementChild, options);
624
609
  };
625
- this.getKeywords = () => {
610
+ this.getKeywords = (id) => {
626
611
  const keywordsOfKind = [];
627
- for (const model of this.modelMap.values()) {
628
- const commentNodes = this.createCommentsNode(model);
629
- commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
612
+ const keywordsByGroup = [...this.modelMap.values()].filter((m) => m.objectType === ObjectTypes.Keyword &&
613
+ m.containedGroup === id);
614
+ for (const model of keywordsByGroup) {
630
615
  if (isKeyword(model)) {
631
616
  const keyword = this.parseContents(model.name || '', 'div', this.getComments(model), {
632
617
  topNode: schema.nodes.keyword.create({
633
618
  id: model._id,
634
619
  contents: model.name,
635
- comments: commentNodes.map((c) => c.attrs.id),
636
620
  }),
637
621
  });
638
622
  keywordsOfKind.push(keyword);
@@ -679,4 +663,26 @@ export class Decoder {
679
663
  this.modelMap = modelMap;
680
664
  this.allowMissingElements = allowMissingElements;
681
665
  }
666
+ getKeywordGroups() {
667
+ const kwdGroupNodes = [];
668
+ const kwdGroupsModels = [
669
+ ...this.modelMap.values(),
670
+ ].filter((model) => model.objectType === ObjectTypes.KeywordGroup);
671
+ if (kwdGroupsModels.length > 0) {
672
+ for (const kwdGroupModel of kwdGroupsModels) {
673
+ const keywords = this.getKeywords(kwdGroupModel._id);
674
+ const commentNodes = this.createCommentsNode(kwdGroupModel);
675
+ commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
676
+ const contents = [];
677
+ contents.push(...keywords);
678
+ const kwdGroupNode = schema.nodes.keywords_group.create({
679
+ id: kwdGroupModel._id,
680
+ type: kwdGroupModel.type,
681
+ comments: commentNodes.map((c) => c.attrs.id),
682
+ }, contents);
683
+ kwdGroupNodes.push(kwdGroupNode);
684
+ }
685
+ }
686
+ return kwdGroupNodes;
687
+ }
682
688
  }
@@ -402,18 +402,21 @@ const encoders = {
402
402
  SVGGlyphs: svgDefs(node.attrs.SVGRepresentation),
403
403
  }),
404
404
  keyword: (node, parent) => ({
405
- containerID: parent.attrs.id,
405
+ containedGroup: parent.attrs.id,
406
406
  name: keywordContents(node),
407
407
  }),
408
408
  keywords_element: (node) => ({
409
- contents: elementContents(node),
409
+ contents: '<div></div>',
410
410
  elementType: 'div',
411
411
  paragraphStyle: node.attrs.paragraphStyle || undefined,
412
412
  }),
413
+ keywords_group: (node) => ({
414
+ type: node.attrs.type,
415
+ }),
413
416
  keywords_section: (node, parent, path, priority) => ({
414
417
  category: buildSectionCategory(node),
415
418
  priority: priority.value++,
416
- title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title_plain),
419
+ title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title),
417
420
  path: path.concat([node.attrs.id]),
418
421
  elementIDs: childElements(node)
419
422
  .map((childNode) => childNode.attrs.id)
@@ -38,6 +38,7 @@ export const nodeTypesMap = new Map([
38
38
  [schema.nodes.keyword, ObjectTypes.Keyword],
39
39
  [schema.nodes.keywords_element, ObjectTypes.KeywordsElement],
40
40
  [schema.nodes.keywords_section, ObjectTypes.Section],
41
+ [schema.nodes.keywords_group, ObjectTypes.KeywordGroup],
41
42
  [schema.nodes.listing, ObjectTypes.Listing],
42
43
  [schema.nodes.listing_element, ObjectTypes.ListingElement],
43
44
  [schema.nodes.manuscript, ObjectTypes.Manuscript],
@@ -50,3 +50,4 @@ export const isManuscript = hasObjectType(ObjectTypes.Manuscript);
50
50
  export const isTable = hasObjectType(ObjectTypes.Table);
51
51
  export const isUserProfile = hasObjectType(ObjectTypes.UserProfile);
52
52
  export const isCommentAnnotation = hasObjectType(ObjectTypes.CommentAnnotation);
53
+ export const isKeyword = hasObjectType(ObjectTypes.Keyword);
@@ -34,4 +34,5 @@ export declare const jatsBodyTransformations: {
34
34
  moveTableFooterToEnd(body: Element): void;
35
35
  moveFloatsGroupToBody(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
36
36
  moveBlockNodesFromParagraph(doc: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
37
+ moveKeywordsToBody(document: Document, body: Element, createElement: (tagName: string) => HTMLElement): void;
37
38
  };
@@ -13,8 +13,7 @@
13
13
  * See the License for the specific language governing permissions and
14
14
  * limitations under the License.
15
15
  */
16
- import { Journal, Keyword, KeywordGroup } from '@manuscripts/json-schema';
17
- import { Build } from '../../transformer/builders';
16
+ import { Journal } from '@manuscripts/json-schema';
18
17
  export declare const jatsFrontParser: {
19
18
  parseCounts(counts: Element | null | undefined): {
20
19
  wordCount: number | undefined;
@@ -28,10 +27,6 @@ export declare const jatsFrontParser: {
28
27
  }[] | undefined;
29
28
  } | undefined;
30
29
  parseJournal(journalMeta: Element | null): Partial<Journal>;
31
- parseKeywords(keywordGroupNodes?: NodeListOf<Element> | null): {
32
- groups: Build<KeywordGroup>[];
33
- keywords: Build<Keyword>[];
34
- };
35
30
  parseDates(historyNode: Element | null): {
36
31
  acceptanceDate?: number | undefined;
37
32
  correctionDate?: number | undefined;
@@ -40,18 +35,18 @@ export declare const jatsFrontParser: {
40
35
  revisionReceiveDate?: number | undefined;
41
36
  receiveDate?: number | undefined;
42
37
  } | undefined;
43
- parseSupplements(supplementNodes: Element[] | null): Build<import("@manuscripts/json-schema").Supplement>[];
38
+ parseSupplements(supplementNodes: Element[] | null): import("../../transformer/builders").Build<import("@manuscripts/json-schema").Supplement>[];
44
39
  parseAffiliationNodes(affiliationNodes: Element[]): {
45
- affiliations: Build<import("@manuscripts/json-schema").Affiliation>[];
40
+ affiliations: import("../../transformer/builders").Build<import("@manuscripts/json-schema").Affiliation>[];
46
41
  affiliationIDs: Map<string, string>;
47
42
  };
48
43
  parseFootnoteNodes(footnoteNodes: Element[]): {
49
- footnotes: Build<import("@manuscripts/json-schema").Footnote>[];
44
+ footnotes: import("../../transformer/builders").Build<import("@manuscripts/json-schema").Footnote>[];
50
45
  footnoteIDs: Map<string, string>;
51
46
  };
52
47
  parseCorrespNodes(correspNodes: Element[]): {
53
- correspondingList: Build<import("@manuscripts/json-schema").Corresponding>[];
48
+ correspondingList: import("../../transformer/builders").Build<import("@manuscripts/json-schema").Corresponding>[];
54
49
  correspondingIDs: Map<string, string>;
55
50
  };
56
- parseAuthorNodes(authorNodes: Element[], affiliationIDs: Map<string, string>, footnoteIDs: Map<string, string>, correspondingIDs: Map<string, string>): Build<import("@manuscripts/json-schema").Contributor>[];
51
+ parseAuthorNodes(authorNodes: Element[], affiliationIDs: Map<string, string>, footnoteIDs: Map<string, string>, correspondingIDs: Map<string, string>): import("../../transformer/builders").Build<import("@manuscripts/json-schema").Contributor>[];
57
52
  };
@@ -0,0 +1,26 @@
1
+ /*!
2
+ * © 2019 Atypon Systems LLC
3
+ *
4
+ * Licensed under the Apache License, Version 2.0 (the "License");
5
+ * you may not use this file except in compliance with the License.
6
+ * You may obtain a copy of the License at
7
+ *
8
+ * http://www.apache.org/licenses/LICENSE-2.0
9
+ *
10
+ * Unless required by applicable law or agreed to in writing, software
11
+ * distributed under the License is distributed on an "AS IS" BASIS,
12
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13
+ * See the License for the specific language governing permissions and
14
+ * limitations under the License.
15
+ */
16
+ import { NodeSpec } from 'prosemirror-model';
17
+ import { ManuscriptNode } from '../types';
18
+ interface Attrs {
19
+ id: string;
20
+ }
21
+ export interface KeywordsGroupNode extends ManuscriptNode {
22
+ attrs: Attrs;
23
+ }
24
+ export declare const keywordsGroup: NodeSpec;
25
+ export declare const isKeywordsGroupNode: (node: ManuscriptNode) => node is KeywordsGroupNode;
26
+ export {};
@@ -17,7 +17,7 @@ import { Fragment, Mark as ProsemirrorMark, MarkType, Node as ProsemirrorNode, N
17
17
  import { EditorState, NodeSelection, Plugin, TextSelection, Transaction } from 'prosemirror-state';
18
18
  import { EditorView, NodeView } from 'prosemirror-view';
19
19
  export type Marks = 'bold' | 'code' | 'italic' | 'smallcaps' | 'strikethrough' | 'styled' | 'subscript' | 'superscript' | 'underline' | 'tracked_insert' | 'tracked_delete';
20
- export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comment_list' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keywords_section' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section';
20
+ export type Nodes = 'attribution' | 'bibliography_item' | 'bibliography_element' | 'bibliography_section' | 'blockquote_element' | 'bullet_list' | 'caption' | 'caption_title' | 'comment' | 'comment_list' | 'citation' | 'cross_reference' | 'doc' | 'equation' | 'equation_element' | 'figcaption' | 'figure' | 'graphical_abstract_section' | 'figure_element' | 'footnote' | 'footnotes_element' | 'footnotes_section' | 'hard_break' | 'highlight_marker' | 'inline_equation' | 'inline_footnote' | 'keyword' | 'keywords_element' | 'keywords_group' | 'keywords_section' | 'link' | 'list_item' | 'listing' | 'listing_element' | 'manuscript' | 'missing_figure' | 'ordered_list' | 'paragraph' | 'placeholder' | 'placeholder_element' | 'pullquote_element' | 'section' | 'section_label' | 'section_title' | 'section_title_plain' | 'table' | 'table_body' | 'table_cell' | 'table_element' | 'table_row' | 'table_colgroup' | 'table_col' | 'text' | 'toc_element' | 'toc_section';
21
21
  export type ManuscriptSchema = Schema<Nodes, Marks>;
22
22
  export type ManuscriptEditorState = EditorState;
23
23
  export type ManuscriptEditorView = EditorView;
@@ -37,4 +37,5 @@ export declare class Decoder {
37
37
  private getKeywords;
38
38
  private getManuscriptID;
39
39
  private getFigcaption;
40
+ private getKeywordGroups;
40
41
  }
@@ -13,7 +13,7 @@
13
13
  * See the License for the specific language governing permissions and
14
14
  * limitations under the License.
15
15
  */
16
- import { CommentAnnotation, Figure, Manuscript, Model, ObjectTypes, Table } from '@manuscripts/json-schema';
16
+ import { CommentAnnotation, Figure, Keyword, Manuscript, Model, ObjectTypes, Table } from '@manuscripts/json-schema';
17
17
  import { ManuscriptModel, UserProfileWithAvatar } from './models';
18
18
  export declare enum ExtraObjectTypes {
19
19
  PlaceholderElement = "MPPlaceholderElement"
@@ -27,3 +27,4 @@ export declare const isManuscript: (model: Model) => model is Manuscript;
27
27
  export declare const isTable: (model: Model) => model is Table;
28
28
  export declare const isUserProfile: (model: Model) => model is UserProfileWithAvatar;
29
29
  export declare const isCommentAnnotation: (model: Model) => model is CommentAnnotation;
30
+ export declare const isKeyword: (model: Model) => model is Keyword;
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "@manuscripts/transform",
3
3
  "description": "ProseMirror transformer for Manuscripts applications",
4
- "version": "1.2.5",
4
+ "version": "1.3.0",
5
5
  "repository": "github:Atypon-OpenSource/manuscripts-transform",
6
6
  "license": "Apache-2.0",
7
7
  "main": "dist/cjs",