@manuscripts/body-editor 3.2.14 → 3.2.16

package/dist/cjs/components/outline/DraggableTree.js

@@ -34,6 +34,7 @@ const dnd_1 = require("../../lib/dnd");
 const track_changes_utils_1 = require("../../lib/track-changes-utils");
 const utils_1 = require("../../lib/utils");
 const node_type_icons_1 = require("../../node-type-icons");
+const section_title_1 = require("../../plugins/section_title");
 const Outline_1 = require("./Outline");
 const excludedTypes = [
     transform_1.schema.nodes.table,
@@ -104,13 +105,22 @@ const DraggableTree = ({ tree, view, depth, can, }) => {
         ? (0, utils_1.isBodyLocked)(view.state) || !can?.editArticle
         : true;
     const { node, items, parent } = tree;
+    const sectionTitleState = view
+        ? section_title_1.sectionTitleKey.getState(view.state)
+        : undefined;
     const itemText = (node) => {
         const text = (0, transform_1.nodeTitle)(node);
+        let sectionNumber = node.type.name === 'section' && sectionTitleState
+            ? sectionTitleState.get(node.attrs.id) ?? ''
+            : '';
+        sectionNumber = sectionNumber ? `${sectionNumber}.` : '';
         if (text) {
-            return text.trim();
+            return `${sectionNumber}${sectionNumber ? ' ' : ''}${text.trim()}`;
         }
         const placeholder = (0, transform_1.nodeTitlePlaceholder)(node.type);
-        return react_1.default.createElement(Outline_1.OutlineItemPlaceholder, null, placeholder);
+        return (react_1.default.createElement(Outline_1.OutlineItemPlaceholder, null,
+            sectionNumber && `${sectionNumber} `,
+            placeholder));
     };
     const toggleOpen = () => {
         setOpen(!isOpen);

package/dist/cjs/components/outline/ManuscriptOutline.js

@@ -59,6 +59,6 @@ const ManuscriptOutline = (props) => {
             setValues(undefined);
         }
     }, [debouncedProps, props.can]);
-    return values ? react_1.default.createElement(DraggableTree_1.DraggableTree, { ...values, depth: 0 }) : null;
+    return values && values.view ? react_1.default.createElement(DraggableTree_1.DraggableTree, { ...values, depth: 0 }) : null;
 };
 exports.ManuscriptOutline = ManuscriptOutline;

package/dist/cjs/configs/editor-plugins.js

@@ -32,6 +32,7 @@ const alt_titles_1 = __importDefault(require("../plugins/alt-titles"));
 const bibliography_1 = __importDefault(require("../plugins/bibliography"));
 const comments_1 = __importDefault(require("../plugins/comments"));
 const cross_references_1 = __importDefault(require("../plugins/cross-references"));
+const detect_inconsistency_1 = __importDefault(require("../plugins/detect-inconsistency"));
 const doi_1 = __importDefault(require("../plugins/doi"));
 const editor_props_1 = __importDefault(require("../plugins/editor-props"));
 const elements_1 = __importDefault(require("../plugins/elements"));
@@ -81,6 +82,7 @@ exports.default = (props) => {
         (0, doi_1.default)(),
         (0, section_category_1.default)(props),
         (0, cross_references_1.default)(),
+        (0, detect_inconsistency_1.default)(),
         (0, search_replace_1.default)(),
         (0, lock_body_1.default)(),
         (0, alt_titles_1.default)(),

package/dist/cjs/index.js

@@ -29,7 +29,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.affiliationLabel = exports.authorLabel = exports.bibliographyItemTypes = exports.metadata = exports.getClosestMatch = exports.getNewMatch = exports.searchReplacePluginKey = exports.bibliographyPluginKey = exports.footnotesPluginKey = exports.objectsPluginKey = exports.selectedSuggestionKey = exports.PopperManager = exports.CollabProvider = exports.TypeSelector = exports.OutlineItemIcon = exports.ManuscriptOutline = void 0;
+exports.affiliationLabel = exports.authorLabel = exports.bibliographyItemTypes = exports.metadata = exports.getClosestMatch = exports.getNewMatch = exports.detectInconsistencyPluginKey = exports.searchReplacePluginKey = exports.bibliographyPluginKey = exports.footnotesPluginKey = exports.objectsPluginKey = exports.selectedSuggestionKey = exports.PopperManager = exports.CollabProvider = exports.TypeSelector = exports.OutlineItemIcon = exports.ManuscriptOutline = void 0;
 __exportStar(require("./commands"), exports);
 var ManuscriptOutline_1 = require("./components/outline/ManuscriptOutline");
 Object.defineProperty(exports, "ManuscriptOutline", { enumerable: true, get: function () { return ManuscriptOutline_1.ManuscriptOutline; } });
@@ -65,6 +65,8 @@ var bibliography_1 = require("./plugins/bibliography");
 Object.defineProperty(exports, "bibliographyPluginKey", { enumerable: true, get: function () { return bibliography_1.bibliographyKey; } });
 var search_replace_1 = require("./plugins/search-replace");
 Object.defineProperty(exports, "searchReplacePluginKey", { enumerable: true, get: function () { return search_replace_1.searchReplaceKey; } });
+var detect_inconsistency_1 = require("./plugins/detect-inconsistency");
+Object.defineProperty(exports, "detectInconsistencyPluginKey", { enumerable: true, get: function () { return detect_inconsistency_1.detectInconsistencyKey; } });
 var lib_1 = require("./plugins/search-replace/lib");
 Object.defineProperty(exports, "getNewMatch", { enumerable: true, get: function () { return lib_1.getNewMatch; } });
 Object.defineProperty(exports, "getClosestMatch", { enumerable: true, get: function () { return lib_1.getClosestMatch; } });

package/dist/cjs/plugins/detect-inconsistency/detect-inconsistency-utils.js

@@ -0,0 +1,66 @@
+"use strict";
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.buildPluginState = exports.createDecoration = void 0;
+const prosemirror_state_1 = require("prosemirror-state");
+const prosemirror_view_1 = require("prosemirror-view");
+const bibliography_1 = require("../bibliography");
+const footnotes_1 = require("../footnotes");
+const objects_1 = require("../objects");
+const validators_1 = require("./validators");
+const createDecoration = (node, pos, selectedPos) => {
+    const classNames = ['inconsistency-highlight'];
+    if (selectedPos === pos) {
+        classNames.push('selected-suggestion');
+    }
+    return prosemirror_view_1.Decoration.node(pos, pos + node.nodeSize, {
+        class: classNames.join(' '),
+        'data-inconsistency-type': 'warning',
+    });
+};
+exports.createDecoration = createDecoration;
+const buildPluginState = (state, showDecorations) => {
+    const inconsistencies = [];
+    const decorations = [];
+    const selection = state.selection;
+    let selectedPos = null;
+    if (selection instanceof prosemirror_state_1.NodeSelection) {
+        selectedPos = selection.from;
+    }
+    const context = {
+        pluginStates: {
+            bibliography: (0, bibliography_1.getBibliographyPluginState)(state)?.bibliographyItems,
+            objects: objects_1.objectsKey.getState(state),
+            footnotes: footnotes_1.footnotesKey.getState(state)?.footnotesElementIDs,
+        },
+        showDecorations,
+        selectedPos,
+        decorations,
+    };
+    state.doc.descendants((node, pos) => {
+        const validator = validators_1.validators[node.type.name];
+        if (validator) {
+            inconsistencies.push(...validator(node, pos, context));
+        }
+    });
+    return {
+        decorations: prosemirror_view_1.DecorationSet.create(state.doc, decorations),
+        inconsistencies,
+        showDecorations,
+    };
+};
+exports.buildPluginState = buildPluginState;

package/dist/cjs/plugins/detect-inconsistency/index.js

@@ -0,0 +1,44 @@
+"use strict";
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.detectInconsistencyKey = void 0;
+const prosemirror_state_1 = require("prosemirror-state");
+const prosemirror_view_1 = require("prosemirror-view");
+const detect_inconsistency_utils_1 = require("./detect-inconsistency-utils");
+exports.detectInconsistencyKey = new prosemirror_state_1.PluginKey('detectInconsistency');
+exports.default = () => {
+    return new prosemirror_state_1.Plugin({
+        key: exports.detectInconsistencyKey,
+        state: {
+            init: (_, state) => (0, detect_inconsistency_utils_1.buildPluginState)(state, false),
+            apply: (tr, value, newState) => {
+                const showDecorations = tr.getMeta(exports.detectInconsistencyKey) !== undefined
+                    ? tr.getMeta(exports.detectInconsistencyKey)
+                    : value.showDecorations;
+                return (0, detect_inconsistency_utils_1.buildPluginState)(newState, showDecorations);
+            },
+        },
+        props: {
+            decorations: (state) => {
+                const pluginState = exports.detectInconsistencyKey.getState(state);
+                return pluginState?.showDecorations
+                    ? pluginState.decorations
+                    : prosemirror_view_1.DecorationSet.empty;
+            },
+        },
+    });
+};

package/dist/cjs/plugins/detect-inconsistency/validators.js

@@ -0,0 +1,95 @@
+"use strict";
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.validators = void 0;
+const transform_1 = require("@manuscripts/transform");
+const detect_inconsistency_utils_1 = require("./detect-inconsistency-utils");
+const getNodeDescription = (node) => {
+    return transform_1.nodeNames.get(node.type) || node.type?.name || 'node';
+};
+const createWarning = (node, pos, category, severity) => {
+    const nodeDescription = getNodeDescription(node);
+    const message = category === 'empty-content' ? `Is empty` : `Has no linked reference`;
+    return {
+        type: 'warning',
+        category,
+        severity,
+        message,
+        nodeDescription,
+        node,
+        pos,
+    };
+};
+const validateTitle = (node, pos, context) => {
+    const inconsistencies = [];
+    const isEmpty = node.content.size === 0;
+    if (isEmpty) {
+        const inconsistency = createWarning(node, pos, 'empty-content', 'warning');
+        inconsistencies.push(inconsistency);
+        if (context.showDecorations) {
+            context.decorations.push((0, detect_inconsistency_utils_1.createDecoration)(node, pos, context.selectedPos));
+        }
+    }
+    return inconsistencies;
+};
+const validateCrossReference = (node, pos, context) => {
+    const inconsistencies = [];
+    const figures = Array.from(context.pluginStates.objects?.keys() ?? []);
+    const isInFigures = node.attrs.rids.every((rid) => figures.includes(rid));
+    if (!isInFigures) {
+        const inconsistency = createWarning(node, pos, 'missing-reference', 'warning');
+        inconsistencies.push(inconsistency);
+        if (context.showDecorations) {
+            context.decorations.push((0, detect_inconsistency_utils_1.createDecoration)(node, pos, context.selectedPos));
+        }
+    }
+    return inconsistencies;
+};
+const validateCitation = (node, pos, context) => {
+    const inconsistencies = [];
+    if (context.pluginStates.bibliography) {
+        const isInBibliography = node.attrs.rids.every((rid) => context.pluginStates.bibliography?.get(rid));
+        if (!isInBibliography || node.attrs.rids.length === 0) {
+            const inconsistency = createWarning(node, pos, 'missing-reference', 'warning');
+            inconsistencies.push(inconsistency);
+            if (context.showDecorations) {
+                context.decorations.push((0, detect_inconsistency_utils_1.createDecoration)(node, pos, context.selectedPos));
+            }
+        }
+    }
+    return inconsistencies;
+};
+const validateInlineFootnote = (node, pos, context) => {
+    const inconsistencies = [];
+    if (context.pluginStates.footnotes) {
+        const isInFootnote = node.attrs.rids.every((rid) => context.pluginStates.footnotes?.get(rid));
+        if (!isInFootnote) {
+            const inconsistency = createWarning(node, pos, 'missing-reference', 'warning');
+            inconsistencies.push(inconsistency);
+            if (context.showDecorations) {
+                context.decorations.push((0, detect_inconsistency_utils_1.createDecoration)(node, pos, context.selectedPos));
+            }
+        }
+    }
+    return inconsistencies;
+};
+exports.validators = {
+    [transform_1.schema.nodes.title.name]: validateTitle,
+    [transform_1.schema.nodes.cross_reference.name]: validateCrossReference,
+    [transform_1.schema.nodes.citation.name]: validateCitation,
+    [transform_1.schema.nodes.inline_footnote.name]: validateInlineFootnote,
+};

package/dist/cjs/versions.js

@@ -1,5 +1,5 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.MATHJAX_VERSION = exports.VERSION = void 0;
-exports.VERSION = '3.2.14';
+exports.VERSION = '3.2.16';
 exports.MATHJAX_VERSION = '3.2.2';

package/dist/cjs/views/citation_editable.js

@@ -48,7 +48,8 @@ class CitationEditableView extends citation_1.CitationView {
                 element.parentElement?.classList.contains('comment-icon'));
         };
         this.handleClick = (event) => {
-            if (!this.can.seeReferencesButtons) {
+            if (!this.can.seeReferencesButtons ||
+                this.dom.classList.contains('inconsistency-highlight')) {
                 this.showPopper();
             }
             else if (!(0, track_changes_utils_1.isDeleted)(this.node) && event.button === 0) {
@@ -60,7 +61,9 @@ class CitationEditableView extends citation_1.CitationView {
         };
         this.selectNode = () => {
             this.dom.classList.add('ProseMirror-selectednode');
-            if (this.can.seeReferencesButtons && !(0, track_changes_utils_1.isDeleted)(this.node)) {
+            if (this.can.seeReferencesButtons &&
+                !(0, track_changes_utils_1.isDeleted)(this.node) &&
+                !this.dom.classList.contains('inconsistency-highlight')) {
                 const attrs = this.node.attrs;
                 if (!attrs.rids.length) {
                     this.showPopper();

package/dist/es/components/outline/DraggableTree.js

@@ -8,6 +8,7 @@ import { getDropSide } from '../../lib/dnd';
 import { isDeleted } from '../../lib/track-changes-utils';
 import { isBodyLocked } from '../../lib/utils';
 import { nodeTypeIcon } from '../../node-type-icons';
+import { sectionTitleKey } from '../../plugins/section_title';
 import { Outline, OutlineItem, OutlineItemArrow, OutlineItemIcon, OutlineItemLink, OutlineItemLinkText, OutlineItemNoArrow, OutlineItemPlaceholder, } from './Outline';
 const excludedTypes = [
     schema.nodes.table,
@@ -77,13 +78,22 @@ export const DraggableTree = ({ tree, view, depth, can, }) => {
         ? isBodyLocked(view.state) || !can?.editArticle
         : true;
     const { node, items, parent } = tree;
+    const sectionTitleState = view
+        ? sectionTitleKey.getState(view.state)
+        : undefined;
     const itemText = (node) => {
         const text = nodeTitle(node);
+        let sectionNumber = node.type.name === 'section' && sectionTitleState
+            ? sectionTitleState.get(node.attrs.id) ?? ''
+            : '';
+        sectionNumber = sectionNumber ? `${sectionNumber}.` : '';
         if (text) {
-            return text.trim();
+            return `${sectionNumber}${sectionNumber ? ' ' : ''}${text.trim()}`;
         }
         const placeholder = nodeTitlePlaceholder(node.type);
-        return React.createElement(OutlineItemPlaceholder, null, placeholder);
+        return (React.createElement(OutlineItemPlaceholder, null,
+            sectionNumber && `${sectionNumber} `,
+            placeholder));
     };
     const toggleOpen = () => {
         setOpen(!isOpen);

package/dist/es/components/outline/ManuscriptOutline.js

@@ -33,5 +33,5 @@ export const ManuscriptOutline = (props) => {
             setValues(undefined);
         }
     }, [debouncedProps, props.can]);
-    return values ? React.createElement(DraggableTree, { ...values, depth: 0 }) : null;
+    return values && values.view ? React.createElement(DraggableTree, { ...values, depth: 0 }) : null;
 };

package/dist/es/configs/editor-plugins.js

@@ -27,6 +27,7 @@ import alt_titles from '../plugins/alt-titles';
 import bibliography from '../plugins/bibliography';
 import comments from '../plugins/comments';
 import cross_references from '../plugins/cross-references';
+import detect_inconsistency from '../plugins/detect-inconsistency';
 import doi from '../plugins/doi';
 import editorProps from '../plugins/editor-props';
 import elements from '../plugins/elements';
@@ -76,6 +77,7 @@ export default (props) => {
         doi(),
         section_category(props),
         cross_references(),
+        detect_inconsistency(),
         search_replace(),
         lock_body(),
         alt_titles(),

package/dist/es/index.js

@@ -38,6 +38,7 @@ export { objectsKey as objectsPluginKey } from './plugins/objects';
 export { footnotesKey as footnotesPluginKey } from './plugins/footnotes';
 export { bibliographyKey as bibliographyPluginKey } from './plugins/bibliography';
 export { searchReplaceKey as searchReplacePluginKey, } from './plugins/search-replace';
+export { detectInconsistencyKey as detectInconsistencyPluginKey } from './plugins/detect-inconsistency';
 export { getNewMatch, getClosestMatch } from './plugins/search-replace/lib';
 export { metadata, bibliographyItemTypes } from './lib/references';
 export { authorLabel, affiliationLabel, } from './lib/authors';

package/dist/es/plugins/detect-inconsistency/detect-inconsistency-utils.js

@@ -0,0 +1,61 @@
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { NodeSelection } from 'prosemirror-state';
+import { Decoration, DecorationSet } from 'prosemirror-view';
+import { getBibliographyPluginState } from '../bibliography';
+import { footnotesKey } from '../footnotes';
+import { objectsKey } from '../objects';
+import { validators } from './validators';
+export const createDecoration = (node, pos, selectedPos) => {
+    const classNames = ['inconsistency-highlight'];
+    if (selectedPos === pos) {
+        classNames.push('selected-suggestion');
+    }
+    return Decoration.node(pos, pos + node.nodeSize, {
+        class: classNames.join(' '),
+        'data-inconsistency-type': 'warning',
+    });
+};
+export const buildPluginState = (state, showDecorations) => {
+    const inconsistencies = [];
+    const decorations = [];
+    const selection = state.selection;
+    let selectedPos = null;
+    if (selection instanceof NodeSelection) {
+        selectedPos = selection.from;
+    }
+    const context = {
+        pluginStates: {
+            bibliography: getBibliographyPluginState(state)?.bibliographyItems,
+            objects: objectsKey.getState(state),
+            footnotes: footnotesKey.getState(state)?.footnotesElementIDs,
+        },
+        showDecorations,
+        selectedPos,
+        decorations,
+    };
+    state.doc.descendants((node, pos) => {
+        const validator = validators[node.type.name];
+        if (validator) {
+            inconsistencies.push(...validator(node, pos, context));
+        }
+    });
+    return {
+        decorations: DecorationSet.create(state.doc, decorations),
+        inconsistencies,
+        showDecorations,
+    };
+};

package/dist/es/plugins/detect-inconsistency/index.js

@@ -0,0 +1,41 @@
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { Plugin, PluginKey } from 'prosemirror-state';
+import { DecorationSet } from 'prosemirror-view';
+import { buildPluginState } from './detect-inconsistency-utils';
+export const detectInconsistencyKey = new PluginKey('detectInconsistency');
+export default () => {
+    return new Plugin({
+        key: detectInconsistencyKey,
+        state: {
+            init: (_, state) => buildPluginState(state, false),
+            apply: (tr, value, newState) => {
+                const showDecorations = tr.getMeta(detectInconsistencyKey) !== undefined
+                    ? tr.getMeta(detectInconsistencyKey)
+                    : value.showDecorations;
+                return buildPluginState(newState, showDecorations);
+            },
+        },
+        props: {
+            decorations: (state) => {
+                const pluginState = detectInconsistencyKey.getState(state);
+                return pluginState?.showDecorations
+                    ? pluginState.decorations
+                    : DecorationSet.empty;
+            },
+        },
+    });
+};

package/dist/es/plugins/detect-inconsistency/validators.js

@@ -0,0 +1,92 @@
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { nodeNames, schema, } from '@manuscripts/transform';
+import { createDecoration } from './detect-inconsistency-utils';
+const getNodeDescription = (node) => {
+    return nodeNames.get(node.type) || node.type?.name || 'node';
+};
+const createWarning = (node, pos, category, severity) => {
+    const nodeDescription = getNodeDescription(node);
+    const message = category === 'empty-content' ? `Is empty` : `Has no linked reference`;
+    return {
+        type: 'warning',
+        category,
+        severity,
+        message,
+        nodeDescription,
+        node,
+        pos,
+    };
+};
+const validateTitle = (node, pos, context) => {
+    const inconsistencies = [];
+    const isEmpty = node.content.size === 0;
+    if (isEmpty) {
+        const inconsistency = createWarning(node, pos, 'empty-content', 'warning');
+        inconsistencies.push(inconsistency);
+        if (context.showDecorations) {
+            context.decorations.push(createDecoration(node, pos, context.selectedPos));
+        }
+    }
+    return inconsistencies;
+};
+const validateCrossReference = (node, pos, context) => {
+    const inconsistencies = [];
+    const figures = Array.from(context.pluginStates.objects?.keys() ?? []);
+    const isInFigures = node.attrs.rids.every((rid) => figures.includes(rid));
+    if (!isInFigures) {
+        const inconsistency = createWarning(node, pos, 'missing-reference', 'warning');
+        inconsistencies.push(inconsistency);
+        if (context.showDecorations) {
+            context.decorations.push(createDecoration(node, pos, context.selectedPos));
+        }
+    }
+    return inconsistencies;
+};
+const validateCitation = (node, pos, context) => {
+    const inconsistencies = [];
+    if (context.pluginStates.bibliography) {
+        const isInBibliography = node.attrs.rids.every((rid) => context.pluginStates.bibliography?.get(rid));
+        if (!isInBibliography || node.attrs.rids.length === 0) {
+            const inconsistency = createWarning(node, pos, 'missing-reference', 'warning');
+            inconsistencies.push(inconsistency);
+            if (context.showDecorations) {
+                context.decorations.push(createDecoration(node, pos, context.selectedPos));
+            }
+        }
+    }
+    return inconsistencies;
+};
+const validateInlineFootnote = (node, pos, context) => {
+    const inconsistencies = [];
+    if (context.pluginStates.footnotes) {
+        const isInFootnote = node.attrs.rids.every((rid) => context.pluginStates.footnotes?.get(rid));
+        if (!isInFootnote) {
+            const inconsistency = createWarning(node, pos, 'missing-reference', 'warning');
+            inconsistencies.push(inconsistency);
+            if (context.showDecorations) {
+                context.decorations.push(createDecoration(node, pos, context.selectedPos));
+            }
+        }
+    }
+    return inconsistencies;
+};
+export const validators = {
+    [schema.nodes.title.name]: validateTitle,
+    [schema.nodes.cross_reference.name]: validateCrossReference,
+    [schema.nodes.citation.name]: validateCitation,
+    [schema.nodes.inline_footnote.name]: validateInlineFootnote,
+};

package/dist/es/versions.js

@@ -1,2 +1,2 @@
-export const VERSION = '3.2.14';
+export const VERSION = '3.2.16';
 export const MATHJAX_VERSION = '3.2.2';

package/dist/es/views/citation_editable.js

@@ -42,7 +42,8 @@ export class CitationEditableView extends CitationView {
                 element.parentElement?.classList.contains('comment-icon'));
         };
         this.handleClick = (event) => {
-            if (!this.can.seeReferencesButtons) {
+            if (!this.can.seeReferencesButtons ||
+                this.dom.classList.contains('inconsistency-highlight')) {
                 this.showPopper();
             }
             else if (!isDeleted(this.node) && event.button === 0) {
@@ -54,7 +55,9 @@ export class CitationEditableView extends CitationView {
         };
         this.selectNode = () => {
             this.dom.classList.add('ProseMirror-selectednode');
-            if (this.can.seeReferencesButtons && !isDeleted(this.node)) {
+            if (this.can.seeReferencesButtons &&
+                !isDeleted(this.node) &&
+                !this.dom.classList.contains('inconsistency-highlight')) {
                 const attrs = this.node.attrs;
                 if (!attrs.rids.length) {
                     this.showPopper();

package/dist/types/index.d.ts

@@ -39,6 +39,8 @@ export { objectsKey as objectsPluginKey } from './plugins/objects';
 export { footnotesKey as footnotesPluginKey } from './plugins/footnotes';
 export { bibliographyKey as bibliographyPluginKey } from './plugins/bibliography';
 export { searchReplaceKey as searchReplacePluginKey, SearchReplacePluginState, } from './plugins/search-replace';
+export { detectInconsistencyKey as detectInconsistencyPluginKey } from './plugins/detect-inconsistency';
 export { getNewMatch, getClosestMatch } from './plugins/search-replace/lib';
 export { metadata, bibliographyItemTypes } from './lib/references';
 export { authorLabel, affiliationLabel, AffiliationAttrs, ContributorAttrs, } from './lib/authors';
+export type { Inconsistency } from './plugins/detect-inconsistency';

package/dist/types/plugins/detect-inconsistency/detect-inconsistency-utils.d.ts

@@ -0,0 +1,33 @@
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { ManuscriptEditorState, ManuscriptNode } from '@manuscripts/transform';
+import { Decoration, DecorationSet } from 'prosemirror-view';
+export type Inconsistency = {
+    type: 'warning';
+    category: 'missing-reference' | 'empty-content';
+    severity: 'error' | 'warning';
+    message: string;
+    nodeDescription: string;
+    node: ManuscriptNode;
+    pos: number;
+};
+export type PluginState = {
+    decorations: DecorationSet;
+    inconsistencies: Array<Inconsistency>;
+    showDecorations: boolean;
+};
+export declare const createDecoration: (node: ManuscriptNode, pos: number, selectedPos: number | null) => Decoration;
+export declare const buildPluginState: (state: ManuscriptEditorState, showDecorations: boolean) => PluginState;

package/dist/types/plugins/detect-inconsistency/index.d.ts

@@ -0,0 +1,21 @@
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { Plugin, PluginKey } from 'prosemirror-state';
+import { PluginState } from './detect-inconsistency-utils';
+export { Inconsistency } from './detect-inconsistency-utils';
+export declare const detectInconsistencyKey: PluginKey<PluginState>;
+declare const _default: () => Plugin<PluginState>;
+export default _default;

package/dist/types/plugins/detect-inconsistency/validators.d.ts

@@ -0,0 +1,30 @@
+/*!
+ * © 2025 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { BibliographyItemAttrs, ManuscriptNode, Target } from '@manuscripts/transform';
+import { Decoration } from 'prosemirror-view';
+import { Inconsistency } from './detect-inconsistency-utils';
+export type ValidatorContext = {
+    pluginStates: {
+        bibliography: Map<string, BibliographyItemAttrs> | undefined;
+        objects: Map<string, Target> | undefined;
+        footnotes: Map<string, string> | undefined;
+    };
+    showDecorations: boolean;
+    selectedPos: number | null;
+    decorations: Decoration[];
+};
+export type NodeValidator = (node: ManuscriptNode, pos: number, context: ValidatorContext) => Inconsistency[];
+export declare const validators: Record<string, NodeValidator>;

package/dist/types/versions.d.ts

@@ -1,2 +1,2 @@
-export declare const VERSION = "3.2.14";
+export declare const VERSION = "3.2.16";
 export declare const MATHJAX_VERSION = "3.2.2";

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@manuscripts/body-editor",
   "description": "Prosemirror components for editing and viewing manuscripts",
-  "version": "3.2.14",
+  "version": "3.2.16",
   "repository": "github:Atypon-OpenSource/manuscripts-body-editor",
   "license": "Apache-2.0",
   "main": "dist/cjs",
@@ -38,9 +38,9 @@
     "@citation-js/plugin-pubmed": "0.3.0",
     "@citation-js/plugin-ris": "0.7.18",
     "@manuscripts/json-schema": "2.2.12",
-    "@manuscripts/style-guide": "3.1.3",
-    "@manuscripts/track-changes-plugin": "2.0.2",
-    "@manuscripts/transform": "4.2.2",
+    "@manuscripts/style-guide": "3.1.4",
+    "@manuscripts/track-changes-plugin": "2.0.3",
+    "@manuscripts/transform": "4.2.3",
     "@popperjs/core": "2.11.8",
     "citeproc": "2.4.63",
     "codemirror": "5.65.19",

package/styles/AdvancedEditor.css

@@ -764,13 +764,28 @@ span.comment-marker {
 
 .selected-suggestion:not(.block-container):not(.graphical-abstract):not(
     .keywords
-  ):not(figure):not(figure .equation),
+  ):not(figure):not(figure .equation):not(.inconsistency-highlight),
 .footnote-marker-selected {
   border-width: 2px 0 2px 0 !important;
   border-style: solid !important;
   border-color: var(--common-color);
 }
 
+.ProseMirror .inconsistency-highlight {
+  border: 1px solid #f35143!important;
+  background: #fff1f0;
+  border-radius: 4px;
+  box-sizing: border-box;
+  position: relative;
+}
+
+.ProseMirror .inconsistency-highlight.selected-suggestion,
+.ProseMirror .inconsistency-highlight.footnote-marker-selected,
+.ProseMirror .inconsistency-highlight.ProseMirror-selectednode {
+  border: 2px solid #f35143!important;
+  background: #fff1f0;
+}
+
 .block-bullet_list .selected-suggestion p,
 .block-ordered_list .selected-suggestion p {
   margin: 0;

package/styles/Editor.css

@@ -1001,6 +1001,12 @@
   border-color: transparent;
 }
 
+.ProseMirror .footnote-marker:empty {
+  vertical-align: baseline;
+  min-height: 18px;
+  min-width: 5px;
+}
+
 .ProseMirror .footnote .footnote-marker {
   color: inherit;
   cursor: default;