@manuscripts/body-editor 1.7.6 → 1.7.8-LEAN-3377-0

package/dist/cjs/assets.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.editAttrsTrackingIcon = exports.commentIcon = exports.editIcon = void 0;
+exports.alertIcon = exports.editAttrsTrackingIcon = exports.commentIcon = exports.editIcon = void 0;
 exports.editIcon = `
   <svg
     width="14"
@@ -102,3 +102,19 @@ exports.editAttrsTrackingIcon = `
     />
   </svg>
 `;
+exports.alertIcon = `
+  <svg
+    width="12"
+    height="12"
+    viewBox="0 0 12 12"
+    fill="none"
+    xmlns="http://www.w3.org/2000/svg"
+  >
+    <path
+      fill-rule="evenodd"
+      clip-rule="evenodd"
+      d="M6 12C2.68629 12 1.18852e-06 9.31371 1.47821e-06 6C1.7679e-06 2.68629 2.68629 1.39444e-07 6 4.29138e-07C9.31371 7.18831e-07 12 2.68629 12 6C12 9.31371 9.31371 12 6 12ZM6.74998 2.99996L6.75 6.37462C6.75 6.78819 6.41522 7.12243 6.00166 7.12334C5.58681 7.12426 5.25001 6.78821 5.25001 6.37335L5.25 3.00082C5.25 2.58629 5.58629 2.25037 6.00082 2.25083C6.4147 2.25128 6.74998 2.58607 6.74998 2.99996ZM6.75 8.99263C6.75 9.46884 6.47288 9.75 5.99853 9.75C5.52419 9.75 5.25 9.47179 5.25 8.99558C5.25 8.51937 5.52421 8.25 5.99855 8.25C6.47289 8.25 6.75 8.51642 6.75 8.99263Z"
+      fill="#FE8F1F"
+    />
+  </svg>
+`;

package/dist/cjs/components/views/FigureDropdown.js

@@ -10,9 +10,9 @@ const TriangleCollapsed_1 = __importDefault(require("@manuscripts/assets/react/T
 const style_guide_1 = require("@manuscripts/style-guide");
 const react_1 = __importDefault(require("react"));
 const styled_components_1 = __importDefault(require("styled-components"));
-const FigureElementOptions = ({ can, files, modelMap, handleAdd, handleUpload, }) => {
+const FigureElementOptions = ({ can, files, getFilesMap, handleAdd, handleUpload, }) => {
     const { isOpen, toggleOpen, wrapperRef } = (0, style_guide_1.useDropdown)();
-    let { supplements, otherFiles } = (0, style_guide_1.useFiles)(modelMap, files);
+    let { supplements, otherFiles } = (0, style_guide_1.useFiles)(getFilesMap(), files);
     supplements = supplements.filter(style_guide_1.isImageFile);
     otherFiles = otherFiles.filter(style_guide_1.isImageFile);
     return (react_1.default.createElement(FilesDropdownWrapper, { onClick: toggleOpen, ref: wrapperRef },
@@ -30,9 +30,9 @@ const FigureElementOptions = ({ can, files, modelMap, handleAdd, handleUpload, }
                 " New file...")))));
 };
 exports.FigureElementOptions = FigureElementOptions;
-const FigureOptions = ({ can, files, modelMap, handleDownload, handleUpload, handleDetach, handleReplace, }) => {
+const FigureOptions = ({ can, files, getFilesMap, handleDownload, handleUpload, handleDetach, handleReplace, }) => {
     const { isOpen, toggleOpen, wrapperRef } = (0, style_guide_1.useDropdown)();
-    const otherFiles = (0, style_guide_1.useFiles)(modelMap, files).otherFiles.filter(style_guide_1.isImageFile);
+    const otherFiles = (0, style_guide_1.useFiles)(getFilesMap(), files).otherFiles.filter(style_guide_1.isImageFile);
     const showDownload = handleDownload && can.downloadFiles;
     const showUpload = handleUpload && can.uploadFile;
     const showDetach = handleDetach && can.editArticle;

package/dist/cjs/configs/editor-plugins.js

@@ -52,7 +52,7 @@ exports.default = (props) => {
         (0, elements_1.default)(),
         (0, persist_1.default)(),
         (0, sections_1.default)(),
-        (0, toc_1.default)(props),
+        (0, toc_1.default)(),
         (0, bibliography_1.default)(props),
         (0, objects_1.default)(props),
         (0, affiliations_1.default)(),

package/dist/cjs/lib/build-file-models.js

@@ -0,0 +1,41 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.buildFileMap = void 0;
+const json_schema_1 = require("@manuscripts/json-schema");
+const track_changes_plugin_1 = require("@manuscripts/track-changes-plugin");
+const transform_1 = require("@manuscripts/transform");
+const bibliography_utils_1 = require("../plugins/bibliography/bibliography-utils");
+const buildFileMap = (doc) => {
+    const figures = [];
+    const supplements = [];
+    const sections = [];
+    const buildNode = (node, group) => {
+        var _a;
+        const attrs = (0, bibliography_utils_1.getEffectiveAttrs)(node, true);
+        if (attrs) {
+            const nodeChange = (_a = node.attrs.dataTracked) === null || _a === void 0 ? void 0 : _a.reduce(bibliography_utils_1.getLatest);
+            if (nodeChange &&
+                nodeChange.operation === track_changes_plugin_1.CHANGE_OPERATION.insert &&
+                nodeChange.status === track_changes_plugin_1.CHANGE_STATUS.rejected) {
+                return false;
+            }
+            group.push(node.type.create(Object.assign({}, attrs), node.content));
+        }
+        return false;
+    };
+    doc.descendants((node) => {
+        if (node.type === transform_1.schema.nodes.section &&
+            node.attrs.category === 'MPSectionCategory:abstract-graphical') {
+            return buildNode(node, sections);
+        }
+        if (node.type === transform_1.schema.nodes.figure_element) {
+            return buildNode(node, figures);
+        }
+        if (node.type === transform_1.schema.nodes.supplement) {
+            buildNode(node, supplements);
+        }
+    });
+    sections.push(transform_1.schema.nodes.section.create({ id: (0, transform_1.generateID)(json_schema_1.ObjectTypes.Section) }, figures), transform_1.schema.nodes.supplements.create({ id: (0, transform_1.generateID)(json_schema_1.ObjectTypes.Supplement) }, supplements));
+    return (0, transform_1.encode)(transform_1.schema.nodes.manuscript.create({}, sections));
+};
+exports.buildFileMap = buildFileMap;

package/dist/cjs/plugins/bibliography/bibliography-utils.js

@@ -26,7 +26,7 @@ var __rest = (this && this.__rest) || function (s, e) {
     return t;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.buildCitations = exports.getBibliographyItemModelMap = exports.getBibliographyItem = exports.getCitation = exports.buildDecorations = exports.isBibliographyElement = void 0;
+exports.buildCitations = exports.getBibliographyItemModelMap = exports.getEffectiveAttrs = exports.getLatest = exports.getBibliographyItem = exports.getCitation = exports.buildDecorations = exports.isBibliographyElement = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const track_changes_plugin_1 = require("@manuscripts/track-changes-plugin");
 const transform_1 = require("@manuscripts/transform");
@@ -85,7 +85,7 @@ const buildDecorations = (state, doc) => {
 };
 exports.buildDecorations = buildDecorations;
 const getCitation = (node) => {
-    const attrs = getEffectiveAttrs(node);
+    const attrs = (0, exports.getEffectiveAttrs)(node);
     if (!attrs) {
         return undefined;
     }
@@ -103,7 +103,7 @@ const getCitation = (node) => {
 };
 exports.getCitation = getCitation;
 const getBibliographyItem = (node) => {
-    const attrs = getEffectiveAttrs(node, true);
+    const attrs = (0, exports.getEffectiveAttrs)(node, true);
     if (!attrs) {
         return undefined;
     }
@@ -113,9 +113,10 @@ const getBibliographyItem = (node) => {
 };
 exports.getBibliographyItem = getBibliographyItem;
 const getLatest = (a, b) => a.updatedAt > b.updatedAt ? a : b;
+exports.getLatest = getLatest;
 const getEffectiveAttrs = (node, excludeDeletedNode) => {
     const _a = node.attrs, { dataTracked } = _a, attrs = __rest(_a, ["dataTracked"]);
-    const nodeChange = dataTracked === null || dataTracked === void 0 ? void 0 : dataTracked.reduce(getLatest);
+    const nodeChange = dataTracked === null || dataTracked === void 0 ? void 0 : dataTracked.reduce(exports.getLatest);
     const isDeleted = nodeChange &&
         nodeChange.operation === track_changes_plugin_1.CHANGE_OPERATION.delete &&
         nodeChange.status !== track_changes_plugin_1.CHANGE_STATUS.rejected;
@@ -127,17 +128,18 @@ const getEffectiveAttrs = (node, excludeDeletedNode) => {
         nodeChange.status === track_changes_plugin_1.CHANGE_STATUS.rejected;
     return isRejected ? nodeChange === null || nodeChange === void 0 ? void 0 : nodeChange.oldAttrs : attrs;
 };
+exports.getEffectiveAttrs = getEffectiveAttrs;
 const getBibliographyItemModelMap = (doc) => {
-    const modelMap = new Map();
+    const bibliographyItemMap = new Map();
     doc.descendants((node) => {
         if (node.type === transform_1.schema.nodes.bibliography_item) {
             const model = (0, exports.getBibliographyItem)(node);
             if (model) {
-                modelMap.set(model._id, model);
+                bibliographyItemMap.set(model._id, model);
             }
         }
     });
-    return modelMap;
+    return bibliographyItemMap;
 };
 exports.getBibliographyItemModelMap = getBibliographyItemModelMap;
 const buildCitations = (citations) => citations.map((citation) => ({

package/dist/cjs/plugins/bibliography/index.js

@@ -53,19 +53,19 @@ const buildBibliographyPluginState = (doc, csl, $old) => {
             nodes.push([node, pos]);
         }
     });
-    const modelMap = (0, bibliography_utils_1.getBibliographyItemModelMap)(doc);
+    const bibliographyItemMap = (0, bibliography_utils_1.getBibliographyItemModelMap)(doc);
     const citations = (0, bibliography_utils_1.buildCitations)(nodes);
     const $new = {
         citationNodes: nodes,
         citations,
-        bibliographyItems: modelMap,
+        bibliographyItems: bibliographyItemMap,
     };
     if (!csl.style) {
         return $new;
     }
     if ($old &&
         (0, lodash_1.isEqual)(citations, $old.citations) &&
-        (0, lodash_1.isEqual)(modelMap, $old.bibliographyItems)) {
+        (0, lodash_1.isEqual)(bibliographyItemMap, $old.bibliographyItems)) {
         $new.citationCounts = $old.citationCounts;
         $new.provider = $old.provider;
         $new.renderedCitations = $old.renderedCitations;
@@ -78,7 +78,7 @@ const buildBibliographyPluginState = (doc, csl, $old) => {
             citationCounts.set(rid, count + 1);
         });
         const provider = new library_1.CitationProvider({
-            getLibraryItem: (id) => modelMap.get(id),
+            getLibraryItem: (id) => bibliographyItemMap.get(id),
             citationStyle: csl.style || '',
             locale: csl.locale,
         });

package/dist/cjs/plugins/footnotes/footnotes-utils.js

@@ -0,0 +1,30 @@
+"use strict";
+/*!
+ * © 2024 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.findTableInlineFootnoteIds = void 0;
+const transform_1 = require("@manuscripts/transform");
+const prosemirror_utils_1 = require("prosemirror-utils");
+const findTableInlineFootnoteIds = ($pos) => {
+    var _a;
+    const tableElement = (_a = (0, prosemirror_utils_1.findParentNodeClosestToPos)($pos, (node) => node.type === transform_1.schema.nodes.table_element)) === null || _a === void 0 ? void 0 : _a.node.firstChild;
+    return new Set(tableElement
+        ? (0, prosemirror_utils_1.findChildren)(tableElement, (node) => node.type === transform_1.schema.nodes.inline_footnote)
+            .map(({ node }) => node.attrs.rids)
+            .flat()
+        : []);
+};
+exports.findTableInlineFootnoteIds = findTableInlineFootnoteIds;

package/dist/cjs/plugins/footnotes/index.js

@@ -15,14 +15,16 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.buildPluginState = exports.footnotesKey = void 0;
+exports.uncitedFootnoteWidget = exports.buildPluginState = exports.footnotesKey = void 0;
 const transform_1 = require("@manuscripts/transform");
 const lodash_1 = require("lodash");
 const prosemirror_state_1 = require("prosemirror-state");
 const prosemirror_utils_1 = require("prosemirror-utils");
 const prosemirror_view_1 = require("prosemirror-view");
+const assets_1 = require("../../assets");
 const utils_1 = require("../../lib/utils");
 const placeholder_1 = require("../placeholder");
+const footnotes_utils_1 = require("./footnotes-utils");
 exports.footnotesKey = new prosemirror_state_1.PluginKey('footnotes');
 const buildPluginState = (doc) => {
     const nodes = [];
@@ -59,6 +61,13 @@ const labelWidget = (label, id) => (view) => {
     });
     return element;
 };
+const uncitedFootnoteWidget = () => () => {
+    const element = document.createElement('span');
+    element.className = 'unctied-table-footnote';
+    element.innerHTML = assets_1.alertIcon;
+    return element;
+};
+exports.uncitedFootnoteWidget = uncitedFootnoteWidget;
 exports.default = () => {
     return new prosemirror_state_1.Plugin({
         key: exports.footnotesKey,
@@ -101,7 +110,8 @@ exports.default = () => {
                     }
                 }
                 const { labels } = exports.footnotesKey.getState(state);
-                state.doc.descendants((node, pos) => {
+                let tableInlineFootnoteIds = undefined;
+                state.doc.descendants((node, pos, parent) => {
                     var _a;
                     if ((0, transform_1.isFootnoteNode)(node)) {
                         const id = node.attrs.id;
@@ -116,11 +126,21 @@ exports.default = () => {
                         if (!((_a = node.firstChild) === null || _a === void 0 ? void 0 : _a.textContent)) {
                             decorations.push(prosemirror_view_1.Decoration.widget(pos + 2, (0, placeholder_1.placeholderWidget)('Add new note here')));
                         }
+                        if (tableInlineFootnoteIds &&
+                            !tableInlineFootnoteIds.has(node.attrs.id)) {
+                            decorations.push(prosemirror_view_1.Decoration.widget(pos + node.nodeSize - 1, (0, exports.uncitedFootnoteWidget)()));
+                        }
                     }
                     if (node.type === transform_1.schema.nodes.footnotes_element) {
                         decorations.push(prosemirror_view_1.Decoration.node(pos, pos + node.nodeSize, {
                             class: 'footnote-element',
                         }));
+                        if ((parent === null || parent === void 0 ? void 0 : parent.type) === transform_1.schema.nodes.table_element_footer) {
+                            tableInlineFootnoteIds = (0, footnotes_utils_1.findTableInlineFootnoteIds)(state.doc.resolve(pos));
+                        }
+                        else {
+                            tableInlineFootnoteIds = undefined;
+                        }
                     }
                 });
                 return prosemirror_view_1.DecorationSet.create(state.doc, decorations);

package/dist/cjs/plugins/toc.js

@@ -21,27 +21,17 @@ const transform_1 = require("@manuscripts/transform");
 const prosemirror_state_1 = require("prosemirror-state");
 const utils_1 = require("../lib/utils");
 exports.tocKey = new prosemirror_state_1.PluginKey('toc');
-const buildTOCList = (headingStyles, list, node, depth = 1, prefix = '') => {
+const buildTOCList = (list, node, depth = 1, prefix = '') => {
     list.classList.add('manuscript-toc-list');
     if (depth > 1) {
         list.classList.add('manuscript-toc-inner-list');
     }
-    const paragraphStyle = headingStyles.get(`heading${depth}`);
-    const sectionNumberingStyle = paragraphStyle
-        ? paragraphStyle.sectionNumberingStyle
-        : undefined;
-    const numberingScheme = sectionNumberingStyle && sectionNumberingStyle.numberingScheme
-        ? sectionNumberingStyle.numberingScheme
-        : 'decimal';
-    const suffix = sectionNumberingStyle && sectionNumberingStyle.suffix !== undefined
-        ? sectionNumberingStyle.suffix
-        : '.';
-    let index = sectionNumberingStyle ? sectionNumberingStyle.startIndex : 1;
+    let index = 1;
     node.forEach((child) => {
         if (child.type === transform_1.schema.nodes.body) {
             for (const childNode of (0, utils_1.iterateChildren)(child)) {
                 if ((0, transform_1.isSectionNodeType)(childNode.type) && !(0, transform_1.isTOCSectionNode)(childNode)) {
-                    const numbering = numberingScheme === 'none' ? '' : `${prefix}${index}`;
+                    const numbering = `${prefix}${index}`;
                     const firstChildNode = childNode.child(0);
                     if (firstChildNode.type ===
                         firstChildNode.type.schema.nodes.section_title) {
@@ -49,39 +39,16 @@ const buildTOCList = (headingStyles, list, node, depth = 1, prefix = '') => {
                         item.classList.add('manuscript-toc-list-item');
                         item.setAttribute('data-referenced-section', childNode.attrs.id);
                         item.setAttribute('data-referenced-section-path-length', String(depth));
-                        item.textContent = `${numbering ? `${numbering}${suffix}` : ''} ${firstChildNode.textContent || 'Untitled Section'}`;
+                        item.textContent = `${numbering ? `${numbering}.` : ''} ${firstChildNode.textContent || 'Untitled Section'}`;
                         list.appendChild(item);
                     }
-                    const childSection = (0, utils_1.getMatchingChild)(childNode, (node) => (0, transform_1.isSectionNodeType)(node.type));
-                    if (childSection) {
-                        const paragraphStyle = headingStyles.get(`heading${depth + 1}`);
-                        if (!paragraphStyle || paragraphStyle.partOfTOC) {
-                            const sublist = document.createElement('ul');
-                            buildTOCList(headingStyles, sublist, childNode, depth + 1, numbering ? `${numbering}.` : '');
-                            const item = document.createElement('li');
-                            item.appendChild(sublist);
-                            list.appendChild(item);
-                        }
-                    }
                     index++;
                 }
             }
         }
     });
 };
-const isParagraphStyle = (0, transform_1.hasObjectType)(json_schema_1.ObjectTypes.ParagraphStyle);
-const buildHeadingStyles = (modelMap) => {
-    const styles = new Map();
-    for (const model of modelMap.values()) {
-        if (isParagraphStyle(model)) {
-            if (model.name && /^heading\d+$/.test(model.name)) {
-                styles.set(model.name, model);
-            }
-        }
-    }
-    return styles;
-};
-exports.default = (props) => {
+exports.default = () => {
     return new prosemirror_state_1.Plugin({
         key: exports.tocKey,
         appendTransaction(transactions, oldState, newState) {
@@ -94,8 +61,7 @@ exports.default = (props) => {
                 if (node.type === node.type.schema.nodes.toc_element) {
                     const list = document.createElement('ul');
                     list.setAttribute('data-paragraph-style', node.attrs.paragraphStyle);
-                    const headingStyles = buildHeadingStyles(props.getModelMap());
-                    buildTOCList(headingStyles, list, newState.doc);
+                    buildTOCList(list, newState.doc);
                     const contents = list.outerHTML;
                     if (contents !== node.attrs.contents) {
                         nodesToUpdate.push({

package/dist/cjs/testing/default-editor-data.js

@@ -75,7 +75,6 @@ exports.defaultEditorProps = {
         download: () => { },
     },
     getCapabilities: () => (0, style_guide_1.getAllPermitted)(),
-    getModelMap: () => exports.TEST_DATA.MODEL_MAP,
     getManuscript: () => exports.TEST_DATA.MANUSCRIPT,
     cslProps: {
         style: '',
@@ -83,10 +82,6 @@ exports.defaultEditorProps = {
     },
     getCitationProvider: () => undefined,
     plugins: [],
-    deleteModel: (id) => {
-        exports.TEST_DATA.MODEL_MAP.delete(id);
-        return Promise.resolve(id);
-    },
     retrySync: () => Promise.resolve(),
     setComment: () => undefined,
     setSelectedComment: () => undefined,

package/dist/cjs/views/figure_editable.js

@@ -32,6 +32,7 @@ const style_guide_1 = require("@manuscripts/style-guide");
 const react_1 = require("react");
 const react_dom_1 = __importDefault(require("react-dom"));
 const FigureDropdown_1 = require("../components/views/FigureDropdown");
+const build_file_models_1 = require("../lib/build-file-models");
 const track_changes_utils_1 = require("../lib/track-changes-utils");
 const creators_1 = require("./creators");
 const figure_1 = require("./figure");
@@ -134,7 +135,7 @@ class FigureEditableView extends figure_1.FigureView {
                 const componentProps = {
                     can,
                     files,
-                    modelMap: this.props.getModelMap(),
+                    getFilesMap: () => (0, build_file_models_1.buildFileMap)(this.view.state.doc),
                     handleDownload,
                     handleUpload,
                     handleDetach,

package/dist/cjs/views/figure_element.js

@@ -28,8 +28,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.FigureElementView = void 0;
-const style_guide_1 = require("@manuscripts/style-guide");
+const transform_1 = require("@manuscripts/transform");
 const FigureDropdown_1 = require("../components/views/FigureDropdown");
+const build_file_models_1 = require("../lib/build-file-models");
 const utils_1 = require("../lib/utils");
 const block_view_1 = __importDefault(require("./block_view"));
 const creators_1 = require("./creators");
@@ -96,9 +97,7 @@ class FigureElementView extends block_view_1.default {
                     tr.setNodeMarkup(this.getPos() + 1, undefined, Object.assign(Object.assign({}, figure.attrs), { src })).setSelection(selection.map(tr.doc, tr.mapping));
                     dispatch(tr);
                 }
-                if ((0, style_guide_1.isModelFile)(file)) {
-                    yield this.props.deleteModel(file.modelId);
-                }
+                this.deleteSupplementNode(file);
             });
             if (can.uploadFile) {
                 const upload = (file) => __awaiter(this, void 0, void 0, function* () {
@@ -111,7 +110,7 @@ class FigureElementView extends block_view_1.default {
                 const componentProps = {
                     can: can,
                     files: this.props.getFiles(),
-                    modelMap: this.props.getModelMap(),
+                    getFilesMap: () => (0, build_file_models_1.buildFileMap)(this.view.state.doc),
                     handleUpload,
                     handleAdd,
                 };
@@ -121,6 +120,18 @@ class FigureElementView extends block_view_1.default {
             }
         };
     }
+    deleteSupplementNode(file) {
+        if (file.type.id === 'supplementary') {
+            const tr = this.view.state.tr;
+            this.view.state.doc.descendants((node, pos) => {
+                if (node.type === transform_1.schema.nodes.supplement &&
+                    node.attrs.href === file.id) {
+                    tr.delete(pos, pos + node.nodeSize);
+                }
+            });
+            this.view.dispatch(tr);
+        }
+    }
 }
 exports.FigureElementView = FigureElementView;
 exports.default = (0, creators_1.createNodeView)(FigureElementView);

package/dist/es/assets.js

@@ -99,3 +99,19 @@ export const editAttrsTrackingIcon = `
     />
   </svg>
 `;
+export const alertIcon = `
+  <svg
+    width="12"
+    height="12"
+    viewBox="0 0 12 12"
+    fill="none"
+    xmlns="http://www.w3.org/2000/svg"
+  >
+    <path
+      fill-rule="evenodd"
+      clip-rule="evenodd"
+      d="M6 12C2.68629 12 1.18852e-06 9.31371 1.47821e-06 6C1.7679e-06 2.68629 2.68629 1.39444e-07 6 4.29138e-07C9.31371 7.18831e-07 12 2.68629 12 6C12 9.31371 9.31371 12 6 12ZM6.74998 2.99996L6.75 6.37462C6.75 6.78819 6.41522 7.12243 6.00166 7.12334C5.58681 7.12426 5.25001 6.78821 5.25001 6.37335L5.25 3.00082C5.25 2.58629 5.58629 2.25037 6.00082 2.25083C6.4147 2.25128 6.74998 2.58607 6.74998 2.99996ZM6.75 8.99263C6.75 9.46884 6.47288 9.75 5.99853 9.75C5.52419 9.75 5.25 9.47179 5.25 8.99558C5.25 8.51937 5.52421 8.25 5.99855 8.25C6.47289 8.25 6.75 8.51642 6.75 8.99263Z"
+      fill="#FE8F1F"
+    />
+  </svg>
+`;

package/dist/es/components/views/FigureDropdown.js

@@ -4,9 +4,9 @@ import TriangleCollapsed from '@manuscripts/assets/react/TriangleCollapsed';
 import { AttachIcon, DropdownList, getFileIcon, IconButton, IconTextButton, isImageFile, RoundIconButton, UploadIcon, useDropdown, useFiles, } from '@manuscripts/style-guide';
 import React from 'react';
 import styled from 'styled-components';
-export const FigureElementOptions = ({ can, files, modelMap, handleAdd, handleUpload, }) => {
+export const FigureElementOptions = ({ can, files, getFilesMap, handleAdd, handleUpload, }) => {
     const { isOpen, toggleOpen, wrapperRef } = useDropdown();
-    let { supplements, otherFiles } = useFiles(modelMap, files);
+    let { supplements, otherFiles } = useFiles(getFilesMap(), files);
     supplements = supplements.filter(isImageFile);
     otherFiles = otherFiles.filter(isImageFile);
     return (React.createElement(FilesDropdownWrapper, { onClick: toggleOpen, ref: wrapperRef },
@@ -23,9 +23,9 @@ export const FigureElementOptions = ({ can, files, modelMap, handleAdd, handleUp
                 React.createElement(AddIconHighlight, null),
                 " New file...")))));
 };
-export const FigureOptions = ({ can, files, modelMap, handleDownload, handleUpload, handleDetach, handleReplace, }) => {
+export const FigureOptions = ({ can, files, getFilesMap, handleDownload, handleUpload, handleDetach, handleReplace, }) => {
     const { isOpen, toggleOpen, wrapperRef } = useDropdown();
-    const otherFiles = useFiles(modelMap, files).otherFiles.filter(isImageFile);
+    const otherFiles = useFiles(getFilesMap(), files).otherFiles.filter(isImageFile);
     const showDownload = handleDownload && can.downloadFiles;
     const showUpload = handleUpload && can.uploadFile;
     const showDetach = handleDetach && can.editArticle;

package/dist/es/configs/editor-plugins.js

@@ -47,7 +47,7 @@ export default (props) => {
         elements(),
         persist(),
         sections(),
-        toc(props),
+        toc(),
         bibliography(props),
         objects(props),
         affiliations(),

package/dist/es/lib/build-file-models.js

@@ -0,0 +1,37 @@
+import { ObjectTypes } from '@manuscripts/json-schema';
+import { CHANGE_OPERATION, CHANGE_STATUS, } from '@manuscripts/track-changes-plugin';
+import { encode, generateID, schema, } from '@manuscripts/transform';
+import { getEffectiveAttrs, getLatest, } from '../plugins/bibliography/bibliography-utils';
+export const buildFileMap = (doc) => {
+    const figures = [];
+    const supplements = [];
+    const sections = [];
+    const buildNode = (node, group) => {
+        var _a;
+        const attrs = getEffectiveAttrs(node, true);
+        if (attrs) {
+            const nodeChange = (_a = node.attrs.dataTracked) === null || _a === void 0 ? void 0 : _a.reduce(getLatest);
+            if (nodeChange &&
+                nodeChange.operation === CHANGE_OPERATION.insert &&
+                nodeChange.status === CHANGE_STATUS.rejected) {
+                return false;
+            }
+            group.push(node.type.create(Object.assign({}, attrs), node.content));
+        }
+        return false;
+    };
+    doc.descendants((node) => {
+        if (node.type === schema.nodes.section &&
+            node.attrs.category === 'MPSectionCategory:abstract-graphical') {
+            return buildNode(node, sections);
+        }
+        if (node.type === schema.nodes.figure_element) {
+            return buildNode(node, figures);
+        }
+        if (node.type === schema.nodes.supplement) {
+            buildNode(node, supplements);
+        }
+    });
+    sections.push(schema.nodes.section.create({ id: generateID(ObjectTypes.Section) }, figures), schema.nodes.supplements.create({ id: generateID(ObjectTypes.Supplement) }, supplements));
+    return encode(schema.nodes.manuscript.create({}, sections));
+};

package/dist/es/plugins/bibliography/bibliography-utils.js

@@ -105,8 +105,8 @@ export const getBibliographyItem = (node) => {
     const item = Object.assign({ _id: id, objectType: ObjectTypes.BibliographyItem, 'container-title': containerTitle, DOI: doi }, rest);
     return pickBy(item, (v) => v !== undefined);
 };
-const getLatest = (a, b) => a.updatedAt > b.updatedAt ? a : b;
-const getEffectiveAttrs = (node, excludeDeletedNode) => {
+export const getLatest = (a, b) => a.updatedAt > b.updatedAt ? a : b;
+export const getEffectiveAttrs = (node, excludeDeletedNode) => {
     const _a = node.attrs, { dataTracked } = _a, attrs = __rest(_a, ["dataTracked"]);
     const nodeChange = dataTracked === null || dataTracked === void 0 ? void 0 : dataTracked.reduce(getLatest);
     const isDeleted = nodeChange &&
@@ -121,16 +121,16 @@ const getEffectiveAttrs = (node, excludeDeletedNode) => {
     return isRejected ? nodeChange === null || nodeChange === void 0 ? void 0 : nodeChange.oldAttrs : attrs;
 };
 export const getBibliographyItemModelMap = (doc) => {
-    const modelMap = new Map();
+    const bibliographyItemMap = new Map();
     doc.descendants((node) => {
         if (node.type === schema.nodes.bibliography_item) {
             const model = getBibliographyItem(node);
             if (model) {
-                modelMap.set(model._id, model);
+                bibliographyItemMap.set(model._id, model);
             }
         }
     });
-    return modelMap;
+    return bibliographyItemMap;
 };
 export const buildCitations = (citations) => citations.map((citation) => ({
     citationID: citation[0].attrs.id,

package/dist/es/plugins/bibliography/index.js

@@ -50,19 +50,19 @@ const buildBibliographyPluginState = (doc, csl, $old) => {
             nodes.push([node, pos]);
         }
     });
-    const modelMap = getBibliographyItemModelMap(doc);
+    const bibliographyItemMap = getBibliographyItemModelMap(doc);
     const citations = buildCitations(nodes);
     const $new = {
         citationNodes: nodes,
         citations,
-        bibliographyItems: modelMap,
+        bibliographyItems: bibliographyItemMap,
     };
     if (!csl.style) {
         return $new;
     }
     if ($old &&
         isEqual(citations, $old.citations) &&
-        isEqual(modelMap, $old.bibliographyItems)) {
+        isEqual(bibliographyItemMap, $old.bibliographyItems)) {
         $new.citationCounts = $old.citationCounts;
         $new.provider = $old.provider;
         $new.renderedCitations = $old.renderedCitations;
@@ -75,7 +75,7 @@ const buildBibliographyPluginState = (doc, csl, $old) => {
             citationCounts.set(rid, count + 1);
         });
         const provider = new CitationProvider({
-            getLibraryItem: (id) => modelMap.get(id),
+            getLibraryItem: (id) => bibliographyItemMap.get(id),
             citationStyle: csl.style || '',
             locale: csl.locale,
         });

package/dist/es/plugins/footnotes/footnotes-utils.js

@@ -0,0 +1,26 @@
+/*!
+ * © 2024 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { schema } from '@manuscripts/transform';
+import { findChildren, findParentNodeClosestToPos } from 'prosemirror-utils';
+export const findTableInlineFootnoteIds = ($pos) => {
+    var _a;
+    const tableElement = (_a = findParentNodeClosestToPos($pos, (node) => node.type === schema.nodes.table_element)) === null || _a === void 0 ? void 0 : _a.node.firstChild;
+    return new Set(tableElement
+        ? findChildren(tableElement, (node) => node.type === schema.nodes.inline_footnote)
+            .map(({ node }) => node.attrs.rids)
+            .flat()
+        : []);
+};