@manuscripts/body-editor 1.5.14 → 1.5.15-LEAN-3030

package/dist/cjs/commands.js

@@ -14,29 +14,6 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.updateCommentAnnotationState = exports.addComment = exports.deleteHighlightMarkers = exports.insertHighlight = exports.createAndFillTableElement = exports.selectAllIsolating = exports.ignoreAtomBlockNodeForward = exports.isAtEndOfTextBlock = exports.ignoreAtomBlockNodeBackward = exports.isTextSelection = exports.isAtStartOfTextBlock = exports.ifInTableBody = exports.insertTOCSection = exports.insertBibliographySection = exports.insertFootnotesSection = exports.insertSection = exports.insertGraphicalAbstract = exports.insertInlineFootnote = exports.insertInlineEquation = exports.insertCrossReference = exports.insertInlineCitation = exports.insertLink = exports.insertSectionLabel = exports.insertBreak = exports.deleteBlock = exports.insertBlock = exports.insertFileAsFigure = exports.createBlock = exports.createSelection = exports.canInsert = exports.blockActive = exports.isNodeSelection = exports.markActive = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
@@ -50,7 +27,6 @@ const utils_1 = require("./lib/utils");
 const bibliography_1 = require("./plugins/bibliography");
 const comment_annotation_1 = require("./plugins/comment_annotation");
 const footnotes_1 = require("./plugins/footnotes");
-const footnotesUtils = __importStar(require("./plugins/footnotes/footnotes-utils"));
 const highlight_1 = require("./plugins/highlight");
 const markActive = (type) => (state) => {
     const { from, $from, to, empty } = state.selection;
@@ -257,12 +233,11 @@ const insertLink = (state, dispatch) => {
     return true;
 };
 exports.insertLink = insertLink;
-const insertInlineCitation = (state, dispatch, view, embeddedCitationItems = []) => {
-    const citation = (0, transform_1.buildCitation)(state.selection.$anchor.parent.attrs.id, embeddedCitationItems);
+const insertInlineCitation = (state, dispatch, view) => {
     const node = state.schema.nodes.citation.create({
-        rid: citation._id,
+        id: (0, transform_1.generateID)(json_schema_1.ObjectTypes.Citation),
+        rids: [],
         selectedText: selectedText(),
-        embeddedCitationItems: [],
     });
     const pos = state.selection.to;
     const { tr } = state;
@@ -276,7 +251,7 @@ const insertInlineCitation = (state, dispatch, view, embeddedCitationItems = [])
 exports.insertInlineCitation = insertInlineCitation;
 const insertCrossReference = (state, dispatch) => {
     const node = state.schema.nodes.cross_reference.create({
-        rid: null,
+        rids: [],
     });
     const pos = state.selection.to;
     const tr = state.tr.insert(pos, node);
@@ -306,30 +281,29 @@ const insertInlineFootnote = (kind) => (state, dispatch) => {
         kind,
     });
     const insertedAt = state.selection.to;
-    const thisFootnoteNumbering = footnotesUtils.getNewFootnoteNumbering(insertedAt, state);
-    const inlineFootnote = state.schema.nodes.inline_footnote.create({
-        rid: footnote.attrs.id,
-        contents: thisFootnoteNumbering.toString(),
+    const node = state.schema.nodes.inline_footnote.create({
+        rids: [footnote.attrs.id],
     });
     const tr = state.tr;
-    tr.insert(insertedAt, inlineFootnote);
-    const footnotesElementAndPos = footnotesUtils.findFootnotesElement(tr.doc);
-    let selectionPos;
-    if (footnotesElementAndPos === undefined) {
-        const footnotesSection = state.schema.nodes.footnotes_section.create({}, [
+    tr.insert(insertedAt, node);
+    const elements = (0, prosemirror_utils_1.findChildrenByType)(tr.doc, transform_1.schema.nodes.footnotes_element);
+    let selectionPos = undefined;
+    if (!elements.length) {
+        const section = state.schema.nodes.footnotes_section.create({}, [
             state.schema.nodes.section_title.create({}, state.schema.text('Notes')),
             state.schema.nodes.footnotes_element.create({}, footnote),
         ]);
-        const insideEndPos = tr.doc.content.size;
-        tr.insert(insideEndPos, footnotesSection);
-        selectionPos = insideEndPos + footnotesSection.nodeSize;
+        const backmatter = (0, prosemirror_utils_1.findChildrenByType)(tr.doc, transform_1.schema.nodes.backmatter)[0];
+        tr.insert(backmatter.pos + 1, section);
+        selectionPos = backmatter.pos + section.nodeSize;
     }
     else {
-        const [footnotePos, selectPos] = footnotesUtils.getNewFootnoteElementPos(footnotesElementAndPos, thisFootnoteNumbering);
-        tr.insert(footnotePos, footnote);
-        selectionPos = selectPos;
+        const element = elements[0];
+        const pos = element.pos + element.node.nodeSize - 1;
+        tr.insert(pos, footnote);
+        selectionPos = pos + 2;
     }
-    if (dispatch) {
+    if (dispatch && selectionPos) {
         const selection = prosemirror_state_1.TextSelection.create(tr.doc, selectionPos);
         dispatch(tr.setSelection(selection).scrollIntoView());
     }
@@ -619,11 +593,17 @@ const deleteHighlightMarkers = (rid) => (state, dispatch) => {
 exports.deleteHighlightMarkers = deleteHighlightMarkers;
 function addComment(state, dispatch, viewNode, resolvePos) {
     const { selection } = state;
-    const isThereTextSelected = selection.content().size > 0;
-    const selectionNode = getParentNode(selection);
+    const hasText = selection.content().size > 0;
+    const parent = getParentNode(selection);
+    if (!parent) {
+        return false;
+    }
     if (viewNode && resolvePos) {
         const viewNode = getParentNode(prosemirror_state_1.TextSelection.near(resolvePos));
-        if (isThereTextSelected && selectionNode.attrs.id === viewNode.attrs.id) {
+        if (!viewNode) {
+            return false;
+        }
+        if (hasText && parent.attrs.id === viewNode.attrs.id) {
             return addHighlightComment(viewNode, state, dispatch);
         }
         else {
@@ -631,11 +611,11 @@ function addComment(state, dispatch, viewNode, resolvePos) {
         }
     }
     else {
-        if (isThereTextSelected) {
-            return addHighlightComment(selectionNode, state, dispatch);
+        if (hasText) {
+            return addHighlightComment(parent, state, dispatch);
         }
         else {
-            return addBlockComment(selectionNode, state, dispatch);
+            return addBlockComment(parent, state, dispatch);
         }
     }
 }
@@ -643,30 +623,23 @@ exports.addComment = addComment;
 const getParentNode = (selection) => {
     var _a;
     const parentNode = (0, utils_1.findParentNodeWithId)(selection);
-    let node = parentNode === null || parentNode === void 0 ? void 0 : parentNode.node;
-    if (node.type === node.type.schema.nodes.table && parentNode) {
-        const findTableElement = (0, prosemirror_utils_1.findParentNode)((node) => node.type === node.type.schema.nodes.table_element);
-        node = (_a = findTableElement(selection)) === null || _a === void 0 ? void 0 : _a.node;
+    const node = parentNode === null || parentNode === void 0 ? void 0 : parentNode.node;
+    if ((node === null || node === void 0 ? void 0 : node.type) === transform_1.schema.nodes.table) {
+        return (_a = (0, prosemirror_utils_1.findParentNodeOfType)(transform_1.schema.nodes.table_element)(selection)) === null || _a === void 0 ? void 0 : _a.node;
     }
     return node;
 };
-const isAllowedType = (type) => type === type.schema.nodes.section ||
-    type === type.schema.nodes.footnotes_section ||
-    type === type.schema.nodes.bibliography_section ||
-    type === type.schema.nodes.keywords_group ||
-    type === type.schema.nodes.paragraph ||
-    type === type.schema.nodes.figure_element ||
-    type === type.schema.nodes.table_element;
+const isAllowedType = (type) => type === transform_1.schema.nodes.section ||
+    type === transform_1.schema.nodes.footnotes_section ||
+    type === transform_1.schema.nodes.bibliography_section ||
+    type === transform_1.schema.nodes.keyword_group ||
+    type === transform_1.schema.nodes.paragraph ||
+    type === transform_1.schema.nodes.figure_element ||
+    type === transform_1.schema.nodes.table_element;
 const getNode = (node) => {
-    if (node.type === node.type.schema.nodes.keywords_section) {
-        let keywordGroup;
-        node.descendants((child) => {
-            if (child.type === node.type.schema.nodes.keywords_group) {
-                keywordGroup = child;
-                return false;
-            }
-        });
-        return keywordGroup || node;
+    if (node.type === transform_1.schema.nodes.keywords) {
+        const keywordGroups = (0, prosemirror_utils_1.findChildrenByType)(node, transform_1.schema.nodes.keyword_group, true);
+        return keywordGroups.length ? keywordGroups[0].node : node;
     }
     return node;
 };
@@ -685,7 +658,7 @@ const addBlockComment = (node, state, dispatch) => {
 const addHighlightComment = (node, state, dispatch) => {
     const { attrs: { id }, type, } = node;
     const comment = (0, transform_1.buildComment)(id);
-    if (type === state.schema.nodes.paragraph) {
+    if (type === transform_1.schema.nodes.paragraph) {
         const { $anchor, $head } = state.selection;
         const isAllTextSelected = ($anchor.textOffset === 0 && $head.textOffset === 0) ||
             $anchor.textOffset === $head.textOffset;

package/dist/cjs/components/outline/DraggableTree.js

@@ -39,9 +39,9 @@ const excludedTypes = [
     transform_1.schema.nodes.figure,
     transform_1.schema.nodes.footnotes_element,
     transform_1.schema.nodes.bibliography_element,
-    transform_1.schema.nodes.keywords_section,
-    transform_1.schema.nodes.affiliations_section,
-    transform_1.schema.nodes.contributors_section,
+    transform_1.schema.nodes.keywords,
+    transform_1.schema.nodes.affiliations,
+    transform_1.schema.nodes.contributors,
     transform_1.schema.nodes.title,
 ];
 const childrenExcludedTypes = [
@@ -61,7 +61,7 @@ const buildTree = ({ node, pos, index, selected, parent, }) => {
     const isSelected = selected ? node.attrs.id === selected.node.attrs.id : false;
     if (!isChildrenExcluded(node.type)) {
         node.forEach((childNode, offset, childIndex) => {
-            if ((!childNode.isAtom || (0, transform_1.isElementNodeType)(childNode.type)) &&
+            if ((!childNode.isAtom || (0, transform_1.isElementNodeType)(childNode.type) || (0, section_title_1.isSpecialSection)(childNode)) &&
                 childNode.attrs.id &&
                 !isExcluded(childNode.type)) {
                 items.push((0, exports.buildTree)({

package/dist/cjs/components/toolbar/OrderListSelector.js

@@ -37,15 +37,7 @@ const list_1 = require("../../keys/list");
 const ListStyleSelector_1 = require("./ListStyleSelector");
 const ManuscriptToolbar_1 = require("./ManuscriptToolbar");
 const OrderListSelector = ({ state, dispatch, view, title, active, run, enable }) => {
-    const disabled = (0, react_1.useMemo)(() => enable && !enable(state), [state.selection]);
-    const dropDownDisabled = (0, react_1.useMemo)(() => {
-        const { $from, $to } = state.selection;
-        const range = $from.blockRange($to);
-        return !!(enable &&
-            !enable(state) &&
-            range &&
-            !transform_1.schema.nodes.ordered_list.compatibleContent($from.node(range.depth - 1).type));
-    }, [state.selection]);
+    const isEnabled = !enable || enable(state);
     const onClickListType = (0, react_1.useCallback)((type) => {
         if (!dispatch) {
             return;
@@ -63,13 +55,13 @@ const OrderListSelector = ({ state, dispatch, view, title, active, run, enable }
         }
     }, [dispatch, state, view]);
     return (react_1.default.createElement(ManuscriptToolbar_1.ToolbarItem, null,
-        react_1.default.createElement(ListStyleSelector_1.ListButton, { title: title, "data-active": active && active(state), disabled: disabled, onMouseDown: (event) => {
+        react_1.default.createElement(ListStyleSelector_1.ListButton, { title: title, "data-active": active && active(state), disabled: !isEnabled, onMouseDown: (event) => {
                 event.preventDefault();
                 run(state, dispatch);
                 view && view.focus();
             } },
             react_1.default.createElement(ToolbarIconOrderedList_1.default, null)),
-        react_1.default.createElement(ListStyleSelector_1.ListStyleSelector, { disabled: dropDownDisabled, onClickListType: onClickListType, list: [
+        react_1.default.createElement(ListStyleSelector_1.ListStyleSelector, { disabled: !isEnabled, onClickListType: onClickListType, list: [
                 { items: ['1.', '2.', '3.'], type: 'order' },
                 { items: ['A.', 'B.', 'C.'], type: 'alpha-upper' },
                 { items: ['a.', 'b.', 'c.'], type: 'alpha-lower' },

package/dist/cjs/configs/editor-plugins.js

@@ -24,10 +24,10 @@ const prosemirror_dropcursor_1 = require("prosemirror-dropcursor");
 const prosemirror_history_1 = require("prosemirror-history");
 const prosemirror_tables_1 = require("prosemirror-tables");
 const keys_1 = __importDefault(require("../keys"));
-const auxiliary_object_order_1 = __importDefault(require("../plugins/auxiliary_object_order"));
 const bibliography_1 = __importDefault(require("../plugins/bibliography"));
 const comment_annotation_1 = __importDefault(require("../plugins/comment_annotation"));
 const elements_1 = __importDefault(require("../plugins/elements"));
+const footnotes_1 = __importDefault(require("../plugins/footnotes"));
 const highlight_1 = __importDefault(require("../plugins/highlight"));
 const keywords_1 = __importDefault(require("../plugins/keywords"));
 const objects_1 = __importDefault(require("../plugins/objects"));
@@ -56,7 +56,6 @@ exports.default = (props) => {
         (0, keywords_1.default)(props),
         (0, bibliography_1.default)(props),
         (0, objects_1.default)(props),
-        (0, auxiliary_object_order_1.default)(props),
         (0, comment_annotation_1.default)(props),
         (0, paragraphs_1.default)(),
         (0, placeholder_1.default)(),
@@ -64,6 +63,7 @@ exports.default = (props) => {
         (0, highlight_1.default)(props),
         (0, track_changes_ui_1.default)(props),
         (0, tracking_mark_1.default)(),
+        (0, footnotes_1.default)(),
     ];
 };
 document.execCommand('enableObjectResizing', false, 'false');

package/dist/cjs/configs/editor-views.js

@@ -19,11 +19,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const bibliography_element_editable_1 = __importDefault(require("../views/bibliography_element_editable"));
-const bibliography_item_editable_1 = __importDefault(require("../views/bibliography_item_editable"));
 const blockquote_element_editable_1 = __importDefault(require("../views/blockquote_element_editable"));
 const bullet_list_editable_1 = __importDefault(require("../views/bullet_list_editable"));
 const citation_editable_1 = __importDefault(require("../views/citation_editable"));
-const contributors_section_1 = __importDefault(require("../views/contributors_section"));
+const contributors_1 = __importDefault(require("../views/contributors"));
 const cross_reference_editable_1 = __importDefault(require("../views/cross_reference_editable"));
 const equation_editable_1 = __importDefault(require("../views/equation_editable"));
 const equation_element_editable_1 = __importDefault(require("../views/equation_element_editable"));
@@ -38,7 +37,6 @@ const keywords_element_1 = __importDefault(require("../views/keywords_element"))
 const link_editable_1 = __importDefault(require("../views/link_editable"));
 const listing_editable_1 = __importDefault(require("../views/listing_editable"));
 const listing_element_editable_1 = __importDefault(require("../views/listing_element_editable"));
-const meta_section_1 = __importDefault(require("../views/meta_section"));
 const ordered_list_editable_1 = __importDefault(require("../views/ordered_list_editable"));
 const paragraph_editable_1 = __importDefault(require("../views/paragraph_editable"));
 const placeholder_1 = __importDefault(require("../views/placeholder"));
@@ -49,16 +47,16 @@ const section_title_editable_1 = __importDefault(require("../views/section_title
 const table_element_editable_1 = __importDefault(require("../views/table_element_editable"));
 const title_editable_1 = __importDefault(require("../views/title_editable"));
 const toc_element_editable_1 = __importDefault(require("../views/toc_element_editable"));
+const empty_1 = __importDefault(require("../views/empty"));
 exports.default = (props, dispatch) => {
     return {
         title: (0, title_editable_1.default)(props, dispatch),
-        bibliography_item: (0, bibliography_item_editable_1.default)(props),
         bibliography_element: (0, bibliography_element_editable_1.default)(props),
         blockquote_element: (0, blockquote_element_editable_1.default)(props),
         bullet_list: (0, bullet_list_editable_1.default)(props),
         citation: (0, citation_editable_1.default)(props),
         cross_reference: (0, cross_reference_editable_1.default)(props),
-        contributors_section: (0, contributors_section_1.default)(props, dispatch),
+        contributors: (0, contributors_1.default)(props, dispatch),
         equation: (0, equation_editable_1.default)(props),
         equation_element: (0, equation_element_editable_1.default)(props),
         figure: (0, figure_editable_1.default)(props, dispatch),
@@ -81,6 +79,6 @@ exports.default = (props, dispatch) => {
         section_label: (0, section_label_1.default)(props),
         table_element: (0, table_element_editable_1.default)(props),
         toc_element: (0, toc_element_editable_1.default)(props),
-        meta_section: meta_section_1.default,
+        comments: (0, empty_1.default)('comments'),
     };
 };

package/dist/cjs/keys/title.js

@@ -15,6 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
+const transform_1 = require("@manuscripts/transform");
 const prosemirror_commands_1 = require("prosemirror-commands");
 const prosemirror_model_1 = require("prosemirror-model");
 const prosemirror_state_1 = require("prosemirror-state");
@@ -80,6 +81,9 @@ const leaveSectionTitle = (state, dispatch, view) => {
     if ($cursor.parent.type !== $cursor.parent.type.schema.nodes.section_title) {
         return false;
     }
+    if ((0, transform_1.isInGraphicalAbstractSection)($cursor)) {
+        return false;
+    }
     if (!(0, commands_1.isAtEndOfTextBlock)(state, $cursor, view)) {
         return false;
     }

package/dist/cjs/lib/context-menu.js

@@ -21,6 +21,8 @@ const prosemirror_model_1 = require("prosemirror-model");
 const commands_1 = require("../commands");
 const popper_1 = require("./popper");
 const popper = new popper_1.PopperManager();
+const listTypes = [transform_1.schema.nodes.ordered_list, transform_1.schema.nodes.bullet_list];
+const readonlyTypes = [transform_1.schema.nodes.keywords, transform_1.schema.nodes.bibliography_element];
 const sectionLevel = (depth) => {
     switch (depth) {
         case 1:
@@ -159,8 +161,8 @@ class ContextMenu {
             menu.className = 'menu';
             const $pos = this.resolvePos();
             const nodeType = this.node.type;
-            const { nodes } = this.view.state.schema;
-            if (this.isListType(nodeType.name)) {
+            const nodes = transform_1.schema.nodes;
+            if (listTypes.includes(nodeType)) {
                 menu.appendChild(this.createMenuSection((section) => {
                     if (nodeType === nodes.bullet_list) {
                         section.appendChild(this.createMenuItem('Change to Numbered List', () => {
@@ -208,8 +210,8 @@ class ContextMenu {
                     }));
                 }));
             }
-            if (nodeType !== nodes.bibliography_element &&
-                $pos.parent.type !== nodes.keywords_section) {
+            if (!readonlyTypes.includes(nodeType) &&
+                !readonlyTypes.includes($pos.parent.type)) {
                 menu.appendChild(this.createMenuSection((section) => {
                     const nodeName = transform_1.nodeNames.get(nodeType) || '';
                     section.appendChild(this.createMenuItem(`Delete ${nodeName}`, () => {
@@ -317,7 +319,6 @@ class ContextMenu {
             const { getPos, attr, attrs } = option;
             this.view.dispatch(this.view.state.tr.setNodeMarkup(getPos(), undefined, Object.assign(Object.assign({}, attrs), { [attr]: !attrs[attr] })));
         };
-        this.isListType = (type) => ['bullet_list', 'ordered_list'].includes(type);
         this.buildSuppressOptions = () => {
             const items = [];
             let attrs = this.node.attrs;

package/dist/cjs/node-type-icons.js

@@ -40,7 +40,6 @@ const icons = new Map([
     [nodes.equation_element, OutlineIconEquation_1.default],
     [nodes.figure_element, OutlineIconFigure_1.default],
     [nodes.multi_graphic_figure_element, OutlineIconFigure_1.default],
-    [nodes.keywords_section, OutlineIconSection_1.default],
     [nodes.listing_element, OutlineIconCodeSnippet_1.default],
     [nodes.ordered_list, OutlineIconOrderedList_1.default],
     [nodes.paragraph, OutlineIconParagraph_1.default],

package/dist/cjs/plugins/bibliography/bibliography-utils.js

@@ -26,21 +26,23 @@ var __rest = (this && this.__rest) || function (s, e) {
     return t;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getReferencesModelMap = exports.getNodeModel = exports.buildDecorations = exports.isBibliographyElement = void 0;
+exports.buildCitations = exports.getBibliographyItemModelMap = exports.getBibliographyItem = exports.getCitation = exports.buildDecorations = exports.isBibliographyElement = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const track_changes_plugin_1 = require("@manuscripts/track-changes-plugin");
 const transform_1 = require("@manuscripts/transform");
-const lodash_es_1 = require("lodash-es");
+const lodash_1 = require("lodash");
 const prosemirror_view_1 = require("prosemirror-view");
 const isBibliographyElement = (node) => node.type === node.type.schema.nodes.bibliography_element;
 exports.isBibliographyElement = isBibliographyElement;
-const buildDecorations = (doc, citationNodes, popper, referencesModelMap, triggerUpdate) => {
+let count = 0;
+const buildDecorations = (state, doc) => {
     const decorations = [];
     let hasMissingItems = false;
-    for (const [node, pos, citation] of citationNodes) {
-        if (citation.embeddedCitationItems.length) {
-            for (const citationItem of citation.embeddedCitationItems) {
-                if (!referencesModelMap.get(citationItem.bibliographyItem)) {
+    for (const [node, pos] of state.citationNodes) {
+        const rids = node.attrs.rids;
+        if (rids.length) {
+            for (const rid of rids) {
+                if (!state.bibliographyItems.has(rid)) {
                     decorations.push(prosemirror_view_1.Decoration.node(pos, pos + node.nodeSize, {
                         class: 'citation-missing',
                     }));
@@ -72,41 +74,49 @@ const buildDecorations = (doc, citationNodes, popper, referencesModelMap, trigge
             }
         });
     }
-    if (triggerUpdate) {
-        doc.descendants((node, pos) => {
-            if ((0, exports.isBibliographyElement)(node)) {
-                decorations.push(prosemirror_view_1.Decoration.node(pos, pos + node.nodeSize, {}, {
-                    triggerUpdate: true,
-                }));
-            }
-        });
-    }
+    doc.descendants((node, pos) => {
+        if ((0, exports.isBibliographyElement)(node)) {
+            decorations.push(prosemirror_view_1.Decoration.node(pos, pos + node.nodeSize, {}, {
+                refresh: count++,
+            }));
+        }
+    });
     return decorations;
 };
 exports.buildDecorations = buildDecorations;
-const cleanData = (model) => (0, lodash_es_1.pickBy)(model, (value) => value !== undefined);
-const getNodeModel = (node, excludeDeletedNode) => {
-    const getLatest = (a, b) => a.updatedAt > b.updatedAt ? a : b;
-    const mapNodeToModel = (attrs, nodeType) => {
-        if (nodeType === transform_1.schema.nodes.bibliography_item) {
-            const { id, containerTitle, doi } = attrs, rest = __rest(attrs, ["id", "containerTitle", "doi"]);
-            return cleanData(Object.assign(Object.assign({ _id: id, 'container-title': containerTitle, DOI: doi }, rest), { objectType: json_schema_1.ObjectTypes.BibliographyItem }));
-        }
-        const { rid, embeddedCitationItems } = attrs;
-        return {
-            _id: rid,
-            embeddedCitationItems: (embeddedCitationItems === null || embeddedCitationItems === void 0 ? void 0 : embeddedCitationItems.map((item) => ({
-                _id: item.id,
-                bibliographyItem: item.bibliographyItem,
-                objectType: json_schema_1.ObjectTypes.CitationItem,
-            }))) || [],
-            objectType: json_schema_1.ObjectTypes.Citation,
-        };
+const getCitation = (node) => {
+    const attrs = getEffectiveAttrs(node);
+    if (!attrs) {
+        return undefined;
+    }
+    const rids = attrs.rids;
+    const items = rids.map((i) => ({
+        _id: '_',
+        objectType: json_schema_1.ObjectTypes.CitationItem,
+        bibliographyItem: i,
+    }));
+    return {
+        _id: attrs.id,
+        objectType: json_schema_1.ObjectTypes.Citation,
+        embeddedCitationItems: items,
     };
+};
+exports.getCitation = getCitation;
+const getBibliographyItem = (node) => {
+    const attrs = getEffectiveAttrs(node);
+    if (!attrs) {
+        return undefined;
+    }
+    const { id, containerTitle, doi } = attrs, rest = __rest(attrs, ["id", "containerTitle", "doi"]);
+    const item = Object.assign({ _id: id, objectType: json_schema_1.ObjectTypes.BibliographyItem, 'container-title': containerTitle, DOI: doi }, rest);
+    return (0, lodash_1.pickBy)(item, (v) => v !== undefined);
+};
+exports.getBibliographyItem = getBibliographyItem;
+const getLatest = (a, b) => a.updatedAt > b.updatedAt ? a : b;
+const getEffectiveAttrs = (node) => {
     const _a = node.attrs, { dataTracked } = _a, attrs = __rest(_a, ["dataTracked"]);
     const nodeChange = dataTracked === null || dataTracked === void 0 ? void 0 : dataTracked.reduce(getLatest);
     if (nodeChange &&
-        excludeDeletedNode &&
         nodeChange.operation === track_changes_plugin_1.CHANGE_OPERATION.delete &&
         nodeChange.status !== track_changes_plugin_1.CHANGE_STATUS.rejected) {
         return undefined;
@@ -114,15 +124,13 @@ const getNodeModel = (node, excludeDeletedNode) => {
     const isRejected = nodeChange &&
         nodeChange.operation === track_changes_plugin_1.CHANGE_OPERATION.set_node_attributes &&
         nodeChange.status === track_changes_plugin_1.CHANGE_STATUS.rejected;
-    return mapNodeToModel(isRejected ? nodeChange === null || nodeChange === void 0 ? void 0 : nodeChange.oldAttrs : attrs, node.type);
+    return isRejected ? nodeChange === null || nodeChange === void 0 ? void 0 : nodeChange.oldAttrs : attrs;
 };
-exports.getNodeModel = getNodeModel;
-const getReferencesModelMap = (doc, excludeDeletedNode) => {
+const getBibliographyItemModelMap = (doc) => {
     const modelMap = new Map();
     doc.descendants((node) => {
-        if (node.type === transform_1.schema.nodes.bibliography_item ||
-            node.type === transform_1.schema.nodes.citation) {
-            const model = (0, exports.getNodeModel)(node, excludeDeletedNode);
+        if (node.type === transform_1.schema.nodes.bibliography_item) {
+            const model = (0, exports.getBibliographyItem)(node);
             if (model) {
                 modelMap.set(model._id, model);
             }
@@ -130,4 +138,14 @@ const getReferencesModelMap = (doc, excludeDeletedNode) => {
     });
     return modelMap;
 };
-exports.getReferencesModelMap = getReferencesModelMap;
+exports.getBibliographyItemModelMap = getBibliographyItemModelMap;
+const buildCitations = (citations) => citations.map((citation) => ({
+    citationID: citation[0].attrs.id,
+    citationItems: citation[0].attrs.rids.map((rid) => ({
+        id: rid,
+    })),
+    properties: {
+        noteIndex: 0,
+    },
+}));
+exports.buildCitations = buildCitations;