@mantra-ai/core 0.6.1 → 0.7.0

package/dist/analysis/generate-discovery-queries.d.ts

@@ -0,0 +1,30 @@
+import type { LLMResult } from "../ai/types";
+import { type DiscoveryQuerySet } from "./schemas";
+/** Bounded seed context for discovery query generation. */
+export interface SeedContext {
+    title: string;
+    doi?: string;
+    abstract?: string;
+    keywords?: string[];
+    /** Truncated excerpt from methods sections. */
+    methodsExcerpt?: string;
+    /** Truncated excerpt from results sections. */
+    resultsExcerpt?: string;
+    /** Truncated excerpt from limitations/discussion sections. */
+    limitationsExcerpt?: string;
+}
+export interface GenerateDiscoveryQueriesOptions {
+    model?: string;
+    temperature?: number;
+    maxOutputTokens?: number;
+    maxAttempts?: number;
+}
+/**
+ * Generate 2–3 targeted search queries from seed paper context.
+ *
+ * Uses Claude to reason about methods, systems, gaps, and adjacent fields
+ * in the seed papers and produce queries that would surface complementary
+ * work not reachable via citation graph alone.
+ */
+export declare function generateDiscoveryQueries(seeds: SeedContext[], opts?: GenerateDiscoveryQueriesOptions): Promise<LLMResult<DiscoveryQuerySet>>;
+//# sourceMappingURL=generate-discovery-queries.d.ts.map

package/dist/analysis/generate-discovery-queries.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-discovery-queries.d.ts","sourceRoot":"","sources":["../../src/analysis/generate-discovery-queries.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C,OAAO,EAA2B,KAAK,iBAAiB,EAAE,MAAM,WAAW,CAAC;AAG5E,2DAA2D;AAC3D,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,+CAA+C;IAC/C,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,+CAA+C;IAC/C,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,8DAA8D;IAC9D,kBAAkB,CAAC,EAAE,MAAM,CAAC;CAC7B;AAED,MAAM,WAAW,+BAA+B;IAC9C,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED;;;;;;GAMG;AACH,wBAAsB,wBAAwB,CAC5C,KAAK,EAAE,WAAW,EAAE,EACpB,IAAI,CAAC,EAAE,+BAA+B,GACrC,OAAO,CAAC,SAAS,CAAC,iBAAiB,CAAC,CAAC,CAevC"}

package/dist/analysis/generate-discovery-queries.js

@@ -0,0 +1,26 @@
+import { generateWithSchema } from "../ai/claude/generate";
+import { DiscoveryQuerySetSchema } from "./schemas";
+import { buildDiscoveryQueryPrompt } from "./prompts";
+/**
+ * Generate 2–3 targeted search queries from seed paper context.
+ *
+ * Uses Claude to reason about methods, systems, gaps, and adjacent fields
+ * in the seed papers and produce queries that would surface complementary
+ * work not reachable via citation graph alone.
+ */
+export async function generateDiscoveryQueries(seeds, opts) {
+    const messages = buildDiscoveryQueryPrompt(seeds);
+    return generateWithSchema({
+        messages,
+        schema: DiscoveryQuerySetSchema,
+        options: {
+            model: opts?.model ?? "sonnet",
+            temperature: opts?.temperature ?? 0.6,
+            maxOutputTokens: opts?.maxOutputTokens ?? 2048,
+        },
+        retry: {
+            maxAttempts: opts?.maxAttempts ?? 2,
+        },
+    });
+}
+//# sourceMappingURL=generate-discovery-queries.js.map

package/dist/analysis/generate-discovery-queries.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-discovery-queries.js","sourceRoot":"","sources":["../../src/analysis/generate-discovery-queries.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,uBAAuB,CAAC;AAC3D,OAAO,EAAE,uBAAuB,EAA0B,MAAM,WAAW,CAAC;AAC5E,OAAO,EAAE,yBAAyB,EAAE,MAAM,WAAW,CAAC;AAuBtD;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,wBAAwB,CAC5C,KAAoB,EACpB,IAAsC;IAEtC,MAAM,QAAQ,GAAG,yBAAyB,CAAC,KAAK,CAAC,CAAC;IAElD,OAAO,kBAAkB,CAAoB;QAC3C,QAAQ;QACR,MAAM,EAAE,uBAAuB;QAC/B,OAAO,EAAE;YACP,KAAK,EAAE,IAAI,EAAE,KAAK,IAAI,QAAQ;YAC9B,WAAW,EAAE,IAAI,EAAE,WAAW,IAAI,GAAG;YACrC,eAAe,EAAE,IAAI,EAAE,eAAe,IAAI,IAAI;SAC/C;QACD,KAAK,EAAE;YACL,WAAW,EAAE,IAAI,EAAE,WAAW,IAAI,CAAC;SACpC;KACF,CAAC,CAAC;AACL,CAAC"}

package/dist/analysis/generate-hypotheses.d.ts

@@ -1,5 +1,6 @@
 import type { LLMResult } from "../ai/types";
-import { type HypothesisSet, type PaperDigest } from "./schemas";
+import { type HypothesisSet, type Landscape } from "./schemas";
+import { type PreparedPaper } from "./prompts";
 export interface GenerateHypothesesOptions {
     model?: string;
     temperature?: number;
@@ -8,9 +9,10 @@ export interface GenerateHypothesesOptions {
     minPerType?: number;
 }
 /**
- * Synthesise hypotheses across multiple paper digests.
+ * Generate hypotheses from prepared paper texts and a landscape map.
  *
- * Requires at least 2 digests for meaningful cross-paper reasoning.
+ * Takes full paper text (from `mantra prep`) and a structured landscape
+ * (from `mantra map`) as dual inputs. Requires at least 2 papers.
  */
-export declare function generateHypotheses(digests: PaperDigest[], opts?: GenerateHypothesesOptions): Promise<LLMResult<HypothesisSet>>;
+export declare function generateHypotheses(papers: PreparedPaper[], landscape: Landscape, opts?: GenerateHypothesesOptions): Promise<LLMResult<HypothesisSet>>;
 //# sourceMappingURL=generate-hypotheses.d.ts.map

package/dist/analysis/generate-hypotheses.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"generate-hypotheses.d.ts","sourceRoot":"","sources":["../../src/analysis/generate-hypotheses.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C,OAAO,EAAuB,KAAK,aAAa,EAAE,KAAK,SAAS,EAAE,MAAM,WAAW,CAAC;AACpF,OAAO,EAA0B,KAAK,aAAa,EAAE,MAAM,WAAW,CAAC;AAEvE,MAAM,WAAW,yBAAyB;IACxC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED;;;;;GAKG;AACH,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,aAAa,EAAE,EACvB,SAAS,EAAE,SAAS,EACpB,IAAI,CAAC,EAAE,yBAAyB,GAC/B,OAAO,CAAC,SAAS,CAAC,aAAa,CAAC,CAAC,CAgBnC"}

package/dist/analysis/generate-hypotheses.js

@@ -1,21 +1,22 @@
 import { generateWithSchema } from "../ai/claude/generate";
 import { HypothesisSetSchema } from "./schemas";
-import { buildHypothesisPrompt } from "./prompts";
+import { buildHypothesizePrompt } from "./prompts";
 /**
- * Synthesise hypotheses across multiple paper digests.
+ * Generate hypotheses from prepared paper texts and a landscape map.
  *
- * Requires at least 2 digests for meaningful cross-paper reasoning.
+ * Takes full paper text (from `mantra prep`) and a structured landscape
+ * (from `mantra map`) as dual inputs. Requires at least 2 papers.
  */
-export async function generateHypotheses(digests, opts) {
+export async function generateHypotheses(papers, landscape, opts) {
     const minPerType = opts?.minPerType ?? 1;
-    const messages = buildHypothesisPrompt(digests, minPerType);
+    const messages = buildHypothesizePrompt(papers, landscape, { minPerType });
     return generateWithSchema({
         messages,
         schema: HypothesisSetSchema,
         options: {
             model: opts?.model ?? "sonnet",
             temperature: opts?.temperature ?? 0.4,
-            maxOutputTokens: opts?.maxOutputTokens ?? 8192,
+            maxOutputTokens: opts?.maxOutputTokens ?? 16384,
         },
         retry: {
             maxAttempts: opts?.maxAttempts ?? 3,

package/dist/analysis/generate-hypotheses.js.map

@@ -1 +1 @@
-{"version":3,"file":"generate-hypotheses.js","sourceRoot":"","sources":["../../src/analysis/generate-hypotheses.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,uBAAuB,CAAC;AAC3D,OAAO,EAAE,mBAAmB,EAAwC,MAAM,WAAW,CAAC;AACtF,OAAO,EAAE,qBAAqB,EAAE,MAAM,WAAW,CAAC;AAUlD;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,OAAsB,EACtB,IAAgC;IAEhC,MAAM,UAAU,GAAG,IAAI,EAAE,UAAU,IAAI,CAAC,CAAC;IACzC,MAAM,QAAQ,GAAG,qBAAqB,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC;IAE5D,OAAO,kBAAkB,CAAgB;QACvC,QAAQ;QACR,MAAM,EAAE,mBAAmB;QAC3B,OAAO,EAAE;YACP,KAAK,EAAE,IAAI,EAAE,KAAK,IAAI,QAAQ;YAC9B,WAAW,EAAE,IAAI,EAAE,WAAW,IAAI,GAAG;YACrC,eAAe,EAAE,IAAI,EAAE,eAAe,IAAI,IAAI;SAC/C;QACD,KAAK,EAAE;YACL,WAAW,EAAE,IAAI,EAAE,WAAW,IAAI,CAAC;SACpC;KACF,CAAC,CAAC;AACL,CAAC"}
+{"version":3,"file":"generate-hypotheses.js","sourceRoot":"","sources":["../../src/analysis/generate-hypotheses.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,uBAAuB,CAAC;AAC3D,OAAO,EAAE,mBAAmB,EAAsC,MAAM,WAAW,CAAC;AACpF,OAAO,EAAE,sBAAsB,EAAsB,MAAM,WAAW,CAAC;AAUvE;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,MAAuB,EACvB,SAAoB,EACpB,IAAgC;IAEhC,MAAM,UAAU,GAAG,IAAI,EAAE,UAAU,IAAI,CAAC,CAAC;IACzC,MAAM,QAAQ,GAAG,sBAAsB,CAAC,MAAM,EAAE,SAAS,EAAE,EAAE,UAAU,EAAE,CAAC,CAAC;IAE3E,OAAO,kBAAkB,CAAgB;QACvC,QAAQ;QACR,MAAM,EAAE,mBAAmB;QAC3B,OAAO,EAAE;YACP,KAAK,EAAE,IAAI,EAAE,KAAK,IAAI,QAAQ;YAC9B,WAAW,EAAE,IAAI,EAAE,WAAW,IAAI,GAAG;YACrC,eAAe,EAAE,IAAI,EAAE,eAAe,IAAI,KAAK;SAChD;QACD,KAAK,EAAE;YACL,WAAW,EAAE,IAAI,EAAE,WAAW,IAAI,CAAC;SACpC;KACF,CAAC,CAAC;AACL,CAAC"}

package/dist/analysis/generate-landscape.d.ts

@@ -0,0 +1,20 @@
+import type { LLMResult } from "../ai/types";
+import { type Landscape } from "./schemas";
+import { type PreparedPaper } from "./prompts";
+export interface GenerateLandscapeOptions {
+    model?: string;
+    temperature?: number;
+    maxOutputTokens?: number;
+    maxAttempts?: number;
+}
+/**
+ * Generate a research landscape map from prepared paper texts.
+ *
+ * Reads the full text of each paper (as produced by `mantra prep`)
+ * and produces a structured landscape: domain summary, per-paper roles,
+ * cross-paper technique/system indices, connections, and gaps.
+ *
+ * Requires at least 2 papers for meaningful cross-paper analysis.
+ */
+export declare function generateLandscape(papers: PreparedPaper[], opts?: GenerateLandscapeOptions): Promise<LLMResult<Landscape>>;
+//# sourceMappingURL=generate-landscape.d.ts.map

package/dist/analysis/generate-landscape.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-landscape.d.ts","sourceRoot":"","sources":["../../src/analysis/generate-landscape.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C,OAAO,EAAmB,KAAK,SAAS,EAAE,MAAM,WAAW,CAAC;AAC5D,OAAO,EAAkB,KAAK,aAAa,EAAE,MAAM,WAAW,CAAC;AAE/D,MAAM,WAAW,wBAAwB;IACvC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED;;;;;;;;GAQG;AACH,wBAAsB,iBAAiB,CACrC,MAAM,EAAE,aAAa,EAAE,EACvB,IAAI,CAAC,EAAE,wBAAwB,GAC9B,OAAO,CAAC,SAAS,CAAC,SAAS,CAAC,CAAC,CAe/B"}

package/dist/analysis/generate-landscape.js

@@ -0,0 +1,28 @@
+import { generateWithSchema } from "../ai/claude/generate";
+import { LandscapeSchema } from "./schemas";
+import { buildMapPrompt } from "./prompts";
+/**
+ * Generate a research landscape map from prepared paper texts.
+ *
+ * Reads the full text of each paper (as produced by `mantra prep`)
+ * and produces a structured landscape: domain summary, per-paper roles,
+ * cross-paper technique/system indices, connections, and gaps.
+ *
+ * Requires at least 2 papers for meaningful cross-paper analysis.
+ */
+export async function generateLandscape(papers, opts) {
+    const messages = buildMapPrompt(papers);
+    return generateWithSchema({
+        messages,
+        schema: LandscapeSchema,
+        options: {
+            model: opts?.model ?? "sonnet",
+            temperature: opts?.temperature ?? 0.2,
+            maxOutputTokens: opts?.maxOutputTokens ?? 8192,
+        },
+        retry: {
+            maxAttempts: opts?.maxAttempts ?? 3,
+        },
+    });
+}
+//# sourceMappingURL=generate-landscape.js.map

package/dist/analysis/generate-landscape.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-landscape.js","sourceRoot":"","sources":["../../src/analysis/generate-landscape.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,uBAAuB,CAAC;AAC3D,OAAO,EAAE,eAAe,EAAkB,MAAM,WAAW,CAAC;AAC5D,OAAO,EAAE,cAAc,EAAsB,MAAM,WAAW,CAAC;AAS/D;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,MAAuB,EACvB,IAA+B;IAE/B,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC;IAExC,OAAO,kBAAkB,CAAY;QACnC,QAAQ;QACR,MAAM,EAAE,eAAe;QACvB,OAAO,EAAE;YACP,KAAK,EAAE,IAAI,EAAE,KAAK,IAAI,QAAQ;YAC9B,WAAW,EAAE,IAAI,EAAE,WAAW,IAAI,GAAG;YACrC,eAAe,EAAE,IAAI,EAAE,eAAe,IAAI,IAAI;SAC/C;QACD,KAAK,EAAE;YACL,WAAW,EAAE,IAAI,EAAE,WAAW,IAAI,CAAC;SACpC;KACF,CAAC,CAAC;AACL,CAAC"}

package/dist/analysis/index.d.ts

@@ -1,11 +1,16 @@
 export { getBlocksByCategory } from "./block-filter";
 export type { FilteredBlock } from "./block-filter";
-export { PaperDigestSchema, HypothesisSetSchema, } from "./schemas";
-export type { PaperDigest, Hypothesis, HypothesisSet } from "./schemas";
-export { buildExtractionPrompt, buildHypothesisPrompt } from "./prompts";
+export { PaperDigestSchema, HypothesisSetSchema, LandscapeSchema, DiscoveryQuerySetSchema, } from "./schemas";
+export type { PaperDigest, Hypothesis, HypothesisSet, PursueBy, Landscape, PaperRole, DiscoveryQuery, DiscoveryQuerySet } from "./schemas";
+export { buildExtractionPrompt, buildHypothesisPrompt, buildHypothesizePrompt, buildMapPrompt, buildDiscoveryQueryPrompt } from "./prompts";
+export type { PreparedPaper } from "./prompts";
 export { extractFindings } from "./extract-findings";
 export type { ExtractFindingsOptions } from "./extract-findings";
 export { generateHypotheses } from "./generate-hypotheses";
 export type { GenerateHypothesesOptions } from "./generate-hypotheses";
+export { generateLandscape } from "./generate-landscape";
+export type { GenerateLandscapeOptions } from "./generate-landscape";
+export { generateDiscoveryQueries } from "./generate-discovery-queries";
+export type { GenerateDiscoveryQueriesOptions, SeedContext } from "./generate-discovery-queries";
 export type { SectionCategory } from "./types";
 //# sourceMappingURL=index.d.ts.map

package/dist/analysis/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/analysis/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,gBAAgB,CAAC;AACrD,YAAY,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAEpD,OAAO,EACL,iBAAiB,EACjB,mBAAmB,EACnB,eAAe,EACf,uBAAuB,GACxB,MAAM,WAAW,CAAC;AACnB,YAAY,EAAE,WAAW,EAAE,UAAU,EAAE,aAAa,EAAE,QAAQ,EAAE,SAAS,EAAE,SAAS,EAAE,cAAc,EAAE,iBAAiB,EAAE,MAAM,WAAW,CAAC;AAE3I,OAAO,EAAE,qBAAqB,EAAE,qBAAqB,EAAE,sBAAsB,EAAE,cAAc,EAAE,yBAAyB,EAAE,MAAM,WAAW,CAAC;AAC5I,YAAY,EAAE,aAAa,EAAE,MAAM,WAAW,CAAC;AAE/C,OAAO,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AACrD,YAAY,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAC;AAEjE,OAAO,EAAE,kBAAkB,EAAE,MAAM,uBAAuB,CAAC;AAC3D,YAAY,EAAE,yBAAyB,EAAE,MAAM,uBAAuB,CAAC;AAEvE,OAAO,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AACzD,YAAY,EAAE,wBAAwB,EAAE,MAAM,sBAAsB,CAAC;AAErE,OAAO,EAAE,wBAAwB,EAAE,MAAM,8BAA8B,CAAC;AACxE,YAAY,EAAE,+BAA+B,EAAE,WAAW,EAAE,MAAM,8BAA8B,CAAC;AAEjG,YAAY,EAAE,eAAe,EAAE,MAAM,SAAS,CAAC"}

package/dist/analysis/index.js

@@ -1,6 +1,8 @@
 export { getBlocksByCategory } from "./block-filter";
-export { PaperDigestSchema, HypothesisSetSchema, } from "./schemas";
-export { buildExtractionPrompt, buildHypothesisPrompt } from "./prompts";
+export { PaperDigestSchema, HypothesisSetSchema, LandscapeSchema, DiscoveryQuerySetSchema, } from "./schemas";
+export { buildExtractionPrompt, buildHypothesisPrompt, buildHypothesizePrompt, buildMapPrompt, buildDiscoveryQueryPrompt } from "./prompts";
 export { extractFindings } from "./extract-findings";
 export { generateHypotheses } from "./generate-hypotheses";
+export { generateLandscape } from "./generate-landscape";
+export { generateDiscoveryQueries } from "./generate-discovery-queries";
 //# sourceMappingURL=index.js.map

package/dist/analysis/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/analysis/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,gBAAgB,CAAC;AAGrD,OAAO,EACL,iBAAiB,EACjB,mBAAmB,EACnB,eAAe,EACf,uBAAuB,GACxB,MAAM,WAAW,CAAC;AAGnB,OAAO,EAAE,qBAAqB,EAAE,qBAAqB,EAAE,sBAAsB,EAAE,cAAc,EAAE,yBAAyB,EAAE,MAAM,WAAW,CAAC;AAG5I,OAAO,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAGrD,OAAO,EAAE,kBAAkB,EAAE,MAAM,uBAAuB,CAAC;AAG3D,OAAO,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AAGzD,OAAO,EAAE,wBAAwB,EAAE,MAAM,8BAA8B,CAAC"}

package/dist/analysis/prompts.d.ts

@@ -1,6 +1,7 @@
 import type { ChatMessage } from "../ai/types";
 import type { FilteredBlock } from "./block-filter";
-import type { PaperDigest } from "./schemas";
+import type { PaperDigest, Landscape } from "./schemas";
+import type { SeedContext } from "./generate-discovery-queries";
 interface PaperMetadata {
     title?: string;
     doi?: string;
@@ -11,5 +12,14 @@ interface PaperMetadata {
 }
 export declare function buildExtractionPrompt(metadata: PaperMetadata, blocks: FilteredBlock[]): ChatMessage[];
 export declare function buildHypothesisPrompt(digests: PaperDigest[], minPerType?: number): ChatMessage[];
+export interface PreparedPaper {
+    id: string;
+    content: string;
+}
+export declare function buildMapPrompt(papers: PreparedPaper[]): ChatMessage[];
+export declare function buildHypothesizePrompt(papers: PreparedPaper[], landscape: Landscape, opts?: {
+    minPerType?: number;
+}): ChatMessage[];
+export declare function buildDiscoveryQueryPrompt(seeds: SeedContext[]): ChatMessage[];
 export {};
 //# sourceMappingURL=prompts.d.ts.map

package/dist/analysis/prompts.d.ts.map

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package/dist/analysis/prompts.js

@@ -139,4 +139,187 @@ export function buildHypothesisPrompt(digests, minPerType = 1) {
     };
     return [system, user];
 }
+export function buildMapPrompt(papers) {
+    const system = {
+        role: "system",
+        content: [
+            "You are a scientific research analyst. Given the full text of multiple research papers, produce a structured landscape map of the research space they collectively cover.",
+            "",
+            "Your task is to analyse these papers and produce:",
+            "",
+            "DOMAIN SUMMARY: A 1-2 sentence description of the shared scientific landscape across all papers.",
+            "",
+            "PAPERS: For each paper, summarise its role in the landscape:",
+            "- role: one sentence on what this paper contributes",
+            "- key_findings: the most important findings (use specific quantitative details when available)",
+            "- techniques: key experimental/computational methods used",
+            "- systems: key biological systems, organisms, cell lines, proteins, pathways studied",
+            "",
+            "TECHNIQUES: A cross-paper index of techniques. For each technique, list which papers use it.",
+            "",
+            "SYSTEMS: A cross-paper index of biological systems. For each system, list which papers study it.",
+            "",
+            "CONNECTIONS: Identify meaningful connections between papers. Each connection links 2+ papers and has a type:",
+            "- complementary_systems: same question, different biological models",
+            "- shared_technique: same method applied in different contexts",
+            "- shared_system: same biological system studied from different angles",
+            "- contradictory_findings: conflicting results or interpretations",
+            "- builds_upon: one paper's findings directly extend another's",
+            "- methodological_transfer: a technique from one paper could be applied to another's system",
+            "- other: connection that doesn't fit the above",
+            "",
+            "GAPS: Identify knowledge gaps revealed by comparing papers. Each gap has a type:",
+            "- unexplored_intersection: a combination of systems/techniques across papers that nobody has tried",
+            "- contradiction: conflicting findings that need resolution",
+            "- missing_validation: a finding in one paper that lacks validation in a related context",
+            "- methodological: a technique from one paper that should have been applied in another",
+            "- other: gap that doesn't fit the above",
+            "",
+            "Rules:",
+            "- Use the paper IDs as provided (e.g. '1', '3'). Do not invent new identifiers.",
+            "- Extract faithfully from the text. Do not hallucinate findings or connections.",
+            "- Focus on connections and gaps that could lead to new research directions.",
+            "- Be specific: 'both study kinase inhibitors' is better than 'related topics'.",
+            "- Include quantitative details in key_findings when present (effect sizes, p-values, fold changes).",
+        ].join("\n"),
+    };
+    const paperTexts = papers.map((p) => {
+        return `--- PAPER ${p.id} ---\n\n${p.content}`;
+    });
+    const user = {
+        role: "user",
+        content: [
+            `# Research Papers (${papers.length})`,
+            "",
+            paperTexts.join("\n\n"),
+        ].join("\n"),
+    };
+    return [system, user];
+}
+// ── Hypothesis generation prompt (paper text + landscape) ────────
+export function buildHypothesizePrompt(papers, landscape, opts) {
+    const minPerType = opts?.minPerType ?? 1;
+    const system = {
+        role: "system",
+        content: [
+            "You are a scientific hypothesis generator. You are given:",
+            "1. A structured landscape map summarising the research space (domain, papers, connections, gaps)",
+            "2. The full text of each paper (abstract, methods, results, discussion)",
+            "",
+            "Use the landscape as your analytical framework — it shows you where the connections and gaps are. Use the full paper text as your primary evidence — it has the detail and nuance you need to form specific, well-grounded hypotheses.",
+            "",
+            "Generate hypotheses in three categories:",
+            "",
+            "MECHANISTIC: Propose causal mechanisms that connect findings across papers. These should explain how observed phenomena relate or predict interactions between systems/pathways studied in different papers.",
+            "",
+            "METHODOLOGICAL: Propose novel combinations of techniques from different papers that could yield new insights, or identify methodological improvements suggested by comparing approaches across papers.",
+            "",
+            "GAP: Identify knowledge gaps revealed by contradictions, unexplored intersections, or limitations shared across papers, and formulate hypotheses that address them.",
+            "",
+            `Generate at least ${minPerType} hypothesis per category (${minPerType * 3} total minimum).`,
+            "",
+            "For each hypothesis, you MUST include a pursue_by section that describes how to find more evidence:",
+            "- search_queries: 1-4 targeted academic search queries (3-8 words each) that would find papers to confirm, refute, or refine the hypothesis",
+            "- look_for: a guiding question — what kind of evidence are we seeking?",
+            "- expand_systems: biological systems worth exploring further in the context of this hypothesis",
+            "- expand_techniques: techniques worth exploring further",
+            "",
+            "Rules:",
+            "- Each hypothesis must cite at least 2 papers by their paper_id.",
+            "- Each hypothesis must be testable and falsifiable.",
+            "- Each hypothesis must be novel: it should go beyond what any single paper concludes.",
+            "- Do not propose experiments requiring technology that does not currently exist.",
+            "- Provide a concrete testability assessment: the experimental approach and key techniques needed.",
+            "- Assign confidence (high, moderate, low) based on strength of supporting evidence.",
+            "- Use H1, H2, H3... as hypothesis IDs.",
+            "- Ground your hypotheses in specific quantitative findings from the papers when possible.",
+            "- The pursue_by search queries should find papers the citation graph would miss — target different angles, not just the same keywords.",
+        ].join("\n"),
+    };
+    // Serialize landscape as structured context
+    const landscapeParts = [
+        "# Research Landscape",
+        "",
+        `Domain: ${landscape.domain_summary}`,
+        "",
+    ];
+    if (landscape.connections.length > 0) {
+        landscapeParts.push("## Cross-Paper Connections");
+        for (const c of landscape.connections) {
+            landscapeParts.push(`- Papers ${c.papers.join(", ")} [${c.type}]: ${c.description}`);
+        }
+        landscapeParts.push("");
+    }
+    if (landscape.gaps.length > 0) {
+        landscapeParts.push("## Knowledge Gaps");
+        for (const g of landscape.gaps) {
+            landscapeParts.push(`- [${g.type}] (papers ${g.between.join(", ")}): ${g.description}`);
+        }
+        landscapeParts.push("");
+    }
+    // Full paper texts
+    const paperTexts = papers.map((p) => {
+        return `--- PAPER ${p.id} ---\n\n${p.content}`;
+    });
+    const user = {
+        role: "user",
+        content: [
+            landscapeParts.join("\n"),
+            "",
+            `# Full Paper Texts (${papers.length} papers)`,
+            "",
+            paperTexts.join("\n\n"),
+        ].join("\n"),
+    };
+    return [system, user];
+}
+// ── Discovery query generation prompt (seed-based) ──────────────
+export function buildDiscoveryQueryPrompt(seeds) {
+    const system = {
+        role: "system",
+        content: [
+            "You are a scientific literature discovery strategist. Given context from one or more seed papers, generate 2–3 targeted search queries for finding complementary research papers.",
+            "",
+            "Your queries should find papers that would NOT appear in a citation graph of the seeds. Specifically:",
+            "",
+            "- METHODS: Search for other applications of key techniques used in the seeds, in different biological systems or domains.",
+            "- SYSTEM: Search for alternative experimental or computational approaches applied to the same biological system or phenomenon.",
+            "- GAP: Search for work that addresses limitations, open questions, or gaps identified in the seeds.",
+            "- ADJACENT-FIELD: Search for work in neighboring fields that could inform or be informed by the seeds' findings.",
+            "",
+            "Rules:",
+            "- Do NOT restate seed titles as queries. Queries should surface NEW, complementary work.",
+            "- Each query should be 3–8 words, suitable for an academic search engine (Crossref, Google Scholar).",
+            "- Prefer specific, precise terms over broad ones.",
+            "- Cover different angles — do not generate overlapping queries.",
+            "- Label each query with the angle it targets (methods, system, gap, adjacent-field).",
+            "- Provide a brief rationale explaining why this query would find papers the citation graph misses.",
+        ].join("\n"),
+    };
+    const seedTexts = seeds.map((s, i) => {
+        const parts = [`### Seed ${i + 1}: ${s.title}`];
+        if (s.doi)
+            parts.push(`DOI: ${s.doi}`);
+        if (s.abstract)
+            parts.push(`Abstract: ${s.abstract}`);
+        if (s.keywords?.length)
+            parts.push(`Keywords: ${s.keywords.join(", ")}`);
+        if (s.methodsExcerpt)
+            parts.push(`Methods excerpt: ${s.methodsExcerpt}`);
+        if (s.resultsExcerpt)
+            parts.push(`Results excerpt: ${s.resultsExcerpt}`);
+        if (s.limitationsExcerpt)
+            parts.push(`Limitations excerpt: ${s.limitationsExcerpt}`);
+        return parts.join("\n");
+    });
+    const user = {
+        role: "user",
+        content: [
+            `# Seed Papers (${seeds.length})`,
+            "",
+            seedTexts.join("\n\n"),
+        ].join("\n"),
+    };
+    return [system, user];
+}
 //# sourceMappingURL=prompts.js.map

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package/dist/analysis/schemas.d.ts

@@ -141,6 +141,37 @@ export declare const PaperDigestSchema: z.ZodObject<{
     }[];
 }>;
 export type PaperDigest = z.infer<typeof PaperDigestSchema>;
+declare const PursueBySchema: z.ZodObject<{
+    search_queries: z.ZodArray<z.ZodObject<{
+        query: z.ZodString;
+        rationale: z.ZodString;
+    }, "strip", z.ZodTypeAny, {
+        query: string;
+        rationale: string;
+    }, {
+        query: string;
+        rationale: string;
+    }>, "many">;
+    look_for: z.ZodString;
+    expand_systems: z.ZodArray<z.ZodString, "many">;
+    expand_techniques: z.ZodArray<z.ZodString, "many">;
+}, "strip", z.ZodTypeAny, {
+    search_queries: {
+        query: string;
+        rationale: string;
+    }[];
+    look_for: string;
+    expand_systems: string[];
+    expand_techniques: string[];
+}, {
+    search_queries: {
+        query: string;
+        rationale: string;
+    }[];
+    look_for: string;
+    expand_systems: string[];
+    expand_techniques: string[];
+}>;
 declare const HypothesisSchema: z.ZodObject<{
     id: z.ZodString;
     type: z.ZodEnum<["mechanistic", "methodological", "gap"]>;
@@ -152,50 +183,92 @@ declare const HypothesisSchema: z.ZodObject<{
     novelty: z.ZodString;
     testability: z.ZodObject<{
         approach: z.ZodString;
-        feasibility: z.ZodEnum<["straightforward", "moderate", "challenging"]>;
         key_techniques: z.ZodArray<z.ZodString, "many">;
     }, "strip", z.ZodTypeAny, {
         approach: string;
-        feasibility: "moderate" | "straightforward" | "challenging";
         key_techniques: string[];
     }, {
         approach: string;
-        feasibility: "moderate" | "straightforward" | "challenging";
         key_techniques: string[];
     }>;
+    pursue_by: z.ZodObject<{
+        search_queries: z.ZodArray<z.ZodObject<{
+            query: z.ZodString;
+            rationale: z.ZodString;
+        }, "strip", z.ZodTypeAny, {
+            query: string;
+            rationale: string;
+        }, {
+            query: string;
+            rationale: string;
+        }>, "many">;
+        look_for: z.ZodString;
+        expand_systems: z.ZodArray<z.ZodString, "many">;
+        expand_techniques: z.ZodArray<z.ZodString, "many">;
+    }, "strip", z.ZodTypeAny, {
+        search_queries: {
+            query: string;
+            rationale: string;
+        }[];
+        look_for: string;
+        expand_systems: string[];
+        expand_techniques: string[];
+    }, {
+        search_queries: {
+            query: string;
+            rationale: string;
+        }[];
+        look_for: string;
+        expand_systems: string[];
+        expand_techniques: string[];
+    }>;
 }, "strip", z.ZodTypeAny, {
     type: "mechanistic" | "methodological" | "gap";
     id: string;
-    statement: string;
     rationale: string;
+    statement: string;
     supporting_papers: string[];
     supporting_findings: string[];
     confidence: "moderate" | "high" | "low";
     novelty: string;
     testability: {
         approach: string;
-        feasibility: "moderate" | "straightforward" | "challenging";
         key_techniques: string[];
     };
+    pursue_by: {
+        search_queries: {
+            query: string;
+            rationale: string;
+        }[];
+        look_for: string;
+        expand_systems: string[];
+        expand_techniques: string[];
+    };
 }, {
     type: "mechanistic" | "methodological" | "gap";
     id: string;
-    statement: string;
     rationale: string;
+    statement: string;
     supporting_papers: string[];
     supporting_findings: string[];
     confidence: "moderate" | "high" | "low";
     novelty: string;
     testability: {
         approach: string;
-        feasibility: "moderate" | "straightforward" | "challenging";
         key_techniques: string[];
     };
+    pursue_by: {
+        search_queries: {
+            query: string;
+            rationale: string;
+        }[];
+        look_for: string;
+        expand_systems: string[];
+        expand_techniques: string[];
+    };
 }>;
 export declare const HypothesisSetSchema: z.ZodObject<{
-    generated_from: z.ZodNumber;
-    domain_summary: z.ZodString;
-    cross_cutting_themes: z.ZodArray<z.ZodString, "many">;
+    paper_count: z.ZodNumber;
     hypotheses: z.ZodArray<z.ZodObject<{
         id: z.ZodString;
         type: z.ZodEnum<["mechanistic", "methodological", "gap"]>;
@@ -207,86 +280,339 @@ export declare const HypothesisSetSchema: z.ZodObject<{
         novelty: z.ZodString;
         testability: z.ZodObject<{
             approach: z.ZodString;
-            feasibility: z.ZodEnum<["straightforward", "moderate", "challenging"]>;
             key_techniques: z.ZodArray<z.ZodString, "many">;
         }, "strip", z.ZodTypeAny, {
             approach: string;
-            feasibility: "moderate" | "straightforward" | "challenging";
             key_techniques: string[];
         }, {
             approach: string;
-            feasibility: "moderate" | "straightforward" | "challenging";
             key_techniques: string[];
         }>;
+        pursue_by: z.ZodObject<{
+            search_queries: z.ZodArray<z.ZodObject<{
+                query: z.ZodString;
+                rationale: z.ZodString;
+            }, "strip", z.ZodTypeAny, {
+                query: string;
+                rationale: string;
+            }, {
+                query: string;
+                rationale: string;
+            }>, "many">;
+            look_for: z.ZodString;
+            expand_systems: z.ZodArray<z.ZodString, "many">;
+            expand_techniques: z.ZodArray<z.ZodString, "many">;
+        }, "strip", z.ZodTypeAny, {
+            search_queries: {
+                query: string;
+                rationale: string;
+            }[];
+            look_for: string;
+            expand_systems: string[];
+            expand_techniques: string[];
+        }, {
+            search_queries: {
+                query: string;
+                rationale: string;
+            }[];
+            look_for: string;
+            expand_systems: string[];
+            expand_techniques: string[];
+        }>;
     }, "strip", z.ZodTypeAny, {
         type: "mechanistic" | "methodological" | "gap";
         id: string;
-        statement: string;
         rationale: string;
+        statement: string;
         supporting_papers: string[];
         supporting_findings: string[];
         confidence: "moderate" | "high" | "low";
         novelty: string;
         testability: {
             approach: string;
-            feasibility: "moderate" | "straightforward" | "challenging";
             key_techniques: string[];
         };
+        pursue_by: {
+            search_queries: {
+                query: string;
+                rationale: string;
+            }[];
+            look_for: string;
+            expand_systems: string[];
+            expand_techniques: string[];
+        };
     }, {
         type: "mechanistic" | "methodological" | "gap";
         id: string;
-        statement: string;
         rationale: string;
+        statement: string;
         supporting_papers: string[];
         supporting_findings: string[];
         confidence: "moderate" | "high" | "low";
         novelty: string;
         testability: {
             approach: string;
-            feasibility: "moderate" | "straightforward" | "challenging";
             key_techniques: string[];
         };
+        pursue_by: {
+            search_queries: {
+                query: string;
+                rationale: string;
+            }[];
+            look_for: string;
+            expand_systems: string[];
+            expand_techniques: string[];
+        };
     }>, "many">;
 }, "strip", z.ZodTypeAny, {
-    generated_from: number;
-    domain_summary: string;
-    cross_cutting_themes: string[];
+    paper_count: number;
     hypotheses: {
         type: "mechanistic" | "methodological" | "gap";
         id: string;
-        statement: string;
         rationale: string;
+        statement: string;
         supporting_papers: string[];
         supporting_findings: string[];
         confidence: "moderate" | "high" | "low";
         novelty: string;
         testability: {
             approach: string;
-            feasibility: "moderate" | "straightforward" | "challenging";
             key_techniques: string[];
         };
+        pursue_by: {
+            search_queries: {
+                query: string;
+                rationale: string;
+            }[];
+            look_for: string;
+            expand_systems: string[];
+            expand_techniques: string[];
+        };
     }[];
 }, {
-    generated_from: number;
-    domain_summary: string;
-    cross_cutting_themes: string[];
+    paper_count: number;
     hypotheses: {
         type: "mechanistic" | "methodological" | "gap";
         id: string;
-        statement: string;
         rationale: string;
+        statement: string;
         supporting_papers: string[];
         supporting_findings: string[];
         confidence: "moderate" | "high" | "low";
         novelty: string;
         testability: {
             approach: string;
-            feasibility: "moderate" | "straightforward" | "challenging";
             key_techniques: string[];
         };
+        pursue_by: {
+            search_queries: {
+                query: string;
+                rationale: string;
+            }[];
+            look_for: string;
+            expand_systems: string[];
+            expand_techniques: string[];
+        };
     }[];
 }>;
 export type Hypothesis = z.infer<typeof HypothesisSchema>;
 export type HypothesisSet = z.infer<typeof HypothesisSetSchema>;
+export type PursueBy = z.infer<typeof PursueBySchema>;
+declare const PaperRoleSchema: z.ZodObject<{
+    paper_id: z.ZodString;
+    title: z.ZodString;
+    role: z.ZodString;
+    key_findings: z.ZodArray<z.ZodString, "many">;
+    techniques: z.ZodArray<z.ZodString, "many">;
+    systems: z.ZodArray<z.ZodString, "many">;
+}, "strip", z.ZodTypeAny, {
+    title: string;
+    role: string;
+    paper_id: string;
+    techniques: string[];
+    systems: string[];
+    key_findings: string[];
+}, {
+    title: string;
+    role: string;
+    paper_id: string;
+    techniques: string[];
+    systems: string[];
+    key_findings: string[];
+}>;
+export declare const LandscapeSchema: z.ZodObject<{
+    domain_summary: z.ZodString;
+    paper_count: z.ZodNumber;
+    papers: z.ZodArray<z.ZodObject<{
+        paper_id: z.ZodString;
+        title: z.ZodString;
+        role: z.ZodString;
+        key_findings: z.ZodArray<z.ZodString, "many">;
+        techniques: z.ZodArray<z.ZodString, "many">;
+        systems: z.ZodArray<z.ZodString, "many">;
+    }, "strip", z.ZodTypeAny, {
+        title: string;
+        role: string;
+        paper_id: string;
+        techniques: string[];
+        systems: string[];
+        key_findings: string[];
+    }, {
+        title: string;
+        role: string;
+        paper_id: string;
+        techniques: string[];
+        systems: string[];
+        key_findings: string[];
+    }>, "many">;
+    techniques: z.ZodArray<z.ZodObject<{
+        name: z.ZodString;
+        papers: z.ZodArray<z.ZodString, "many">;
+    }, "strip", z.ZodTypeAny, {
+        name: string;
+        papers: string[];
+    }, {
+        name: string;
+        papers: string[];
+    }>, "many">;
+    systems: z.ZodArray<z.ZodObject<{
+        name: z.ZodString;
+        papers: z.ZodArray<z.ZodString, "many">;
+    }, "strip", z.ZodTypeAny, {
+        name: string;
+        papers: string[];
+    }, {
+        name: string;
+        papers: string[];
+    }>, "many">;
+    connections: z.ZodArray<z.ZodObject<{
+        papers: z.ZodArray<z.ZodString, "many">;
+        type: z.ZodEnum<["complementary_systems", "shared_technique", "shared_system", "contradictory_findings", "builds_upon", "methodological_transfer", "other"]>;
+        description: z.ZodString;
+    }, "strip", z.ZodTypeAny, {
+        type: "other" | "complementary_systems" | "shared_technique" | "shared_system" | "contradictory_findings" | "builds_upon" | "methodological_transfer";
+        description: string;
+        papers: string[];
+    }, {
+        type: "other" | "complementary_systems" | "shared_technique" | "shared_system" | "contradictory_findings" | "builds_upon" | "methodological_transfer";
+        description: string;
+        papers: string[];
+    }>, "many">;
+    gaps: z.ZodArray<z.ZodObject<{
+        description: z.ZodString;
+        between: z.ZodArray<z.ZodString, "many">;
+        type: z.ZodEnum<["unexplored_intersection", "contradiction", "missing_validation", "methodological", "other"]>;
+    }, "strip", z.ZodTypeAny, {
+        type: "other" | "methodological" | "unexplored_intersection" | "contradiction" | "missing_validation";
+        description: string;
+        between: string[];
+    }, {
+        type: "other" | "methodological" | "unexplored_intersection" | "contradiction" | "missing_validation";
+        description: string;
+        between: string[];
+    }>, "many">;
+}, "strip", z.ZodTypeAny, {
+    techniques: {
+        name: string;
+        papers: string[];
+    }[];
+    systems: {
+        name: string;
+        papers: string[];
+    }[];
+    paper_count: number;
+    papers: {
+        title: string;
+        role: string;
+        paper_id: string;
+        techniques: string[];
+        systems: string[];
+        key_findings: string[];
+    }[];
+    domain_summary: string;
+    connections: {
+        type: "other" | "complementary_systems" | "shared_technique" | "shared_system" | "contradictory_findings" | "builds_upon" | "methodological_transfer";
+        description: string;
+        papers: string[];
+    }[];
+    gaps: {
+        type: "other" | "methodological" | "unexplored_intersection" | "contradiction" | "missing_validation";
+        description: string;
+        between: string[];
+    }[];
+}, {
+    techniques: {
+        name: string;
+        papers: string[];
+    }[];
+    systems: {
+        name: string;
+        papers: string[];
+    }[];
+    paper_count: number;
+    papers: {
+        title: string;
+        role: string;
+        paper_id: string;
+        techniques: string[];
+        systems: string[];
+        key_findings: string[];
+    }[];
+    domain_summary: string;
+    connections: {
+        type: "other" | "complementary_systems" | "shared_technique" | "shared_system" | "contradictory_findings" | "builds_upon" | "methodological_transfer";
+        description: string;
+        papers: string[];
+    }[];
+    gaps: {
+        type: "other" | "methodological" | "unexplored_intersection" | "contradiction" | "missing_validation";
+        description: string;
+        between: string[];
+    }[];
+}>;
+export type Landscape = z.infer<typeof LandscapeSchema>;
+export type PaperRole = z.infer<typeof PaperRoleSchema>;
+declare const DiscoveryQuerySchema: z.ZodObject<{
+    query: z.ZodString;
+    rationale: z.ZodString;
+    angle: z.ZodEnum<["methods", "system", "gap", "adjacent-field"]>;
+}, "strip", z.ZodTypeAny, {
+    query: string;
+    rationale: string;
+    angle: "methods" | "gap" | "system" | "adjacent-field";
+}, {
+    query: string;
+    rationale: string;
+    angle: "methods" | "gap" | "system" | "adjacent-field";
+}>;
+export declare const DiscoveryQuerySetSchema: z.ZodObject<{
+    queries: z.ZodArray<z.ZodObject<{
+        query: z.ZodString;
+        rationale: z.ZodString;
+        angle: z.ZodEnum<["methods", "system", "gap", "adjacent-field"]>;
+    }, "strip", z.ZodTypeAny, {
+        query: string;
+        rationale: string;
+        angle: "methods" | "gap" | "system" | "adjacent-field";
+    }, {
+        query: string;
+        rationale: string;
+        angle: "methods" | "gap" | "system" | "adjacent-field";
+    }>, "many">;
+}, "strip", z.ZodTypeAny, {
+    queries: {
+        query: string;
+        rationale: string;
+        angle: "methods" | "gap" | "system" | "adjacent-field";
+    }[];
+}, {
+    queries: {
+        query: string;
+        rationale: string;
+        angle: "methods" | "gap" | "system" | "adjacent-field";
+    }[];
+}>;
+export type DiscoveryQuery = z.infer<typeof DiscoveryQuerySchema>;
+export type DiscoveryQuerySet = z.infer<typeof DiscoveryQuerySetSchema>;
 export {};
 //# sourceMappingURL=schemas.d.ts.map

package/dist/analysis/schemas.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"schemas.d.ts","sourceRoot":"","sources":["../../src/analysis/schemas.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAwExB,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAU5B,CAAC;AAEH,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAS5D,QAAA,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAUlB,CAAC;AAEH,QAAA,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAWpB,CAAC;AAEH,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAG9B,CAAC;AAEH,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAC1D,MAAM,MAAM,aAAa,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AAChE,MAAM,MAAM,QAAQ,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AAItD,QAAA,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;EAOnB,CAAC;AAsBH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAkB1B,CAAC;AAEH,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AACxD,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AAIxD,QAAA,MAAM,oBAAoB;;;;;;;;;;;;EAMxB,CAAC;AAEH,eAAO,MAAM,uBAAuB;;;;;;;;;;;;;;;;;;;;;;;;;;EAMlC,CAAC;AAEH,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAClE,MAAM,MAAM,iBAAiB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,uBAAuB,CAAC,CAAC"}

package/dist/analysis/schemas.js

@@ -76,9 +76,17 @@ export const PaperDigestSchema = z.object({
 // ── Cross-paper hypothesis synthesis ────────────────────────────────
 const TestabilitySchema = z.object({
     approach: z.string(),
-    feasibility: z.enum(["straightforward", "moderate", "challenging"]),
     key_techniques: z.array(z.string()),
 });
+const PursueBySchema = z.object({
+    search_queries: z.array(z.object({
+        query: z.string().describe("Academic search query (3-8 words)"),
+        rationale: z.string().describe("Why this query would find relevant papers"),
+    })).min(1).max(4),
+    look_for: z.string().describe("What kind of evidence to seek — a guiding question"),
+    expand_systems: z.array(z.string()).describe("Biological systems to explore further"),
+    expand_techniques: z.array(z.string()).describe("Techniques to explore further"),
+});
 const HypothesisSchema = z.object({
     id: z.string().describe("Hypothesis ID (H1, H2, ...)"),
     type: z.enum(["mechanistic", "methodological", "gap"]),
@@ -89,11 +97,65 @@ const HypothesisSchema = z.object({
     confidence: z.enum(["high", "moderate", "low"]),
     novelty: z.string().describe("What makes this hypothesis novel"),
     testability: TestabilitySchema,
+    pursue_by: PursueBySchema,
 });
 export const HypothesisSetSchema = z.object({
-    generated_from: z.number().int().describe("Number of papers analysed"),
-    domain_summary: z.string(),
-    cross_cutting_themes: z.array(z.string()),
+    paper_count: z.number().int().describe("Number of papers analysed"),
     hypotheses: z.array(HypothesisSchema),
 });
+// ── Research landscape mapping ───────────────────────────────────
+const PaperRoleSchema = z.object({
+    paper_id: z.string().describe("Paper identifier matching the input (e.g. '1', '3')"),
+    title: z.string(),
+    role: z.string().describe("One-sentence summary of this paper's contribution to the landscape"),
+    key_findings: z.array(z.string()).describe("Most important findings from this paper"),
+    techniques: z.array(z.string()).describe("Key techniques used"),
+    systems: z.array(z.string()).describe("Key biological systems studied"),
+});
+const ConnectionSchema = z.object({
+    papers: z.array(z.string()).min(2).describe("Paper IDs involved in this connection"),
+    type: z.enum([
+        "complementary_systems",
+        "shared_technique",
+        "shared_system",
+        "contradictory_findings",
+        "builds_upon",
+        "methodological_transfer",
+        "other",
+    ]),
+    description: z.string().describe("What connects these papers"),
+});
+const GapSchema = z.object({
+    description: z.string().describe("What is missing or unexplored"),
+    between: z.array(z.string()).describe("Paper IDs that reveal this gap"),
+    type: z.enum(["unexplored_intersection", "contradiction", "missing_validation", "methodological", "other"]),
+});
+export const LandscapeSchema = z.object({
+    domain_summary: z.string().describe("1-2 sentence description of the shared scientific landscape"),
+    paper_count: z.number().int().describe("Number of papers analysed"),
+    papers: z.array(PaperRoleSchema).describe("Per-paper analytical summary"),
+    techniques: z.array(z.object({
+        name: z.string(),
+        papers: z.array(z.string()).describe("Paper IDs using this technique"),
+    })).describe("Techniques across papers"),
+    systems: z.array(z.object({
+        name: z.string(),
+        papers: z.array(z.string()).describe("Paper IDs studying this system"),
+    })).describe("Biological systems across papers"),
+    connections: z.array(ConnectionSchema).describe("Cross-paper connections"),
+    gaps: z.array(GapSchema).describe("Knowledge gaps revealed by comparing papers"),
+});
+// ── Seed-based discovery query generation ────────────────────────
+const DiscoveryQuerySchema = z.object({
+    query: z.string().min(3).describe("Search query string for academic paper discovery"),
+    rationale: z.string().describe("Why this query targets complementary work the citation graph would miss"),
+    angle: z.enum(["methods", "system", "gap", "adjacent-field"]).describe("What aspect of the seed this query explores"),
+});
+export const DiscoveryQuerySetSchema = z.object({
+    queries: z
+        .array(DiscoveryQuerySchema)
+        .min(2)
+        .max(4)
+        .describe("2–3 targeted discovery queries derived from seed papers"),
+});
 //# sourceMappingURL=schemas.js.map

package/dist/analysis/schemas.js.map

@@ -1 +1 @@
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+{"version":3,"file":"schemas.js","sourceRoot":"","sources":["../../src/analysis/schemas.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,uEAAuE;AAEvE,MAAM,eAAe,GAAG,CAAC,CAAC,MAAM,CAAC;IAC/B,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE;IAChB,QAAQ,EAAE,CAAC,CAAC,IAAI,CAAC;QACf,OAAO;QACP,SAAS;QACT,YAAY;QACZ,eAAe;QACf,aAAa;QACb,WAAW;QACX,cAAc;QACd,OAAO;KACR,CAAC;IACF,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE;CACpB,CAAC,CAAC;AAEH,MAAM,YAAY,GAAG,CAAC,CAAC,MAAM,CAAC;IAC5B,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE;IAChB,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC;QACX,UAAU;QACV,WAAW;QACX,QAAQ;QACR,SAAS;QACT,SAAS;QACT,SAAS;QACT,UAAU;QACV,OAAO;KACR,CAAC;CACH,CAAC,CAAC;AAEH,MAAM,eAAe,GAAG,CAAC,CAAC,MAAM,CAAC;IAC/B,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE;IACvB,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,SAAS,EAAE,YAAY,EAAE,WAAW,CAAC,CAAC;CAClE,CAAC,CAAC;AAEH,MAAM,aAAa,GAAG,CAAC,CAAC,MAAM,CAAC;IAC7B,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,0CAA0C,CAAC;IACtE,aAAa,EAAE,CAAC,CAAC,IAAI,CAAC;QACpB,cAAc;QACd,eAAe;QACf,aAAa;QACb,eAAe;QACf,aAAa;QACb,kBAAkB;KACnB,CAAC;IACF,QAAQ,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,aAAa,CAAC,CAAC;IAC/D,YAAY,EAAE,CAAC,CAAC,OAAO,EAAE;IACzB,kBAAkB,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,4BAA4B,CAAC;CAC/E,CAAC,CAAC;AAEH,MAAM,gBAAgB,GAAG,CAAC,CAAC,MAAM,CAAC;IAChC,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE;IACvB,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC;QACX,aAAa;QACb,kBAAkB;QAClB,aAAa;QACb,OAAO;QACP,UAAU;QACV,UAAU;QACV,iBAAiB;QACjB,OAAO;KACR,CAAC;CACH,CAAC,CAAC;AAEH,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE;IACpB,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;CACtC,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,iBAAiB,GAAG,CAAC,CAAC,MAAM,CAAC;IACxC,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;IACvD,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE;IACjB,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,gCAAgC,CAAC;IAC7D,UAAU,EAAE,CAAC,CAAC,KAAK,CAAC,eAAe,CAAC;IACpC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,YAAY,CAAC;IAC9B,UAAU,EAAE,CAAC,CAAC,KAAK,CAAC,eAAe,CAAC;IACpC,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,aAAa,CAAC;IAChC,WAAW,EAAE,CAAC,CAAC,KAAK,CAAC,gBAAgB,CAAC;IACtC,cAAc,EAAE,CAAC,CAAC,KAAK,CAAC,kBAAkB,CAAC;CAC5C,CAAC,CAAC;AAIH,uEAAuE;AAEvE,MAAM,iBAAiB,GAAG,CAAC,CAAC,MAAM,CAAC;IACjC,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE;IACpB,cAAc,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;CACpC,CAAC,CAAC;AAEH,MAAM,cAAc,GAAG,CAAC,CAAC,MAAM,CAAC;IAC9B,cAAc,EAAE,CAAC,CAAC,KAAK,CACrB,CAAC,CAAC,MAAM,CAAC;QACP,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,mCAAmC,CAAC;QAC/D,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,2CAA2C,CAAC;KAC5E,CAAC,CACH,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IACf,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,oDAAoD,CAAC;IACnF,cAAc,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,uCAAuC,CAAC;IACrF,iBAAiB,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,+BAA+B,CAAC;CACjF,CAAC,CAAC;AAEH,MAAM,gBAAgB,GAAG,CAAC,CAAC,MAAM,CAAC;IAChC,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;IACtD,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,aAAa,EAAE,gBAAgB,EAAE,KAAK,CAAC,CAAC;IACtD,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE;IACrB,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE;IACrB,iBAAiB,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAC;IAC5D,mBAAmB,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,gCAAgC,CAAC;IACnF,UAAU,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,UAAU,EAAE,KAAK,CAAC,CAAC;IAC/C,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;IAChE,WAAW,EAAE,iBAAiB;IAC9B,SAAS,EAAE,cAAc;CAC1B,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,mBAAmB,GAAG,CAAC,CAAC,MAAM,CAAC;IAC1C,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,CAAC,QAAQ,CAAC,2BAA2B,CAAC;IACnE,UAAU,EAAE,CAAC,CAAC,KAAK,CAAC,gBAAgB,CAAC;CACtC,CAAC,CAAC;AAMH,oEAAoE;AAEpE,MAAM,eAAe,GAAG,CAAC,CAAC,MAAM,CAAC;IAC/B,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,qDAAqD,CAAC;IACpF,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE;IACjB,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,oEAAoE,CAAC;IAC/F,YAAY,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,yCAAyC,CAAC;IACrF,UAAU,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,qBAAqB,CAAC;IAC/D,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,gCAAgC,CAAC;CACxE,CAAC,CAAC;AAEH,MAAM,gBAAgB,GAAG,CAAC,CAAC,MAAM,CAAC;IAChC,MAAM,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,uCAAuC,CAAC;IACpF,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC;QACX,uBAAuB;QACvB,kBAAkB;QAClB,eAAe;QACf,wBAAwB;QACxB,aAAa;QACb,yBAAyB;QACzB,OAAO;KACR,CAAC;IACF,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4BAA4B,CAAC;CAC/D,CAAC,CAAC;AAEH,MAAM,SAAS,GAAG,CAAC,CAAC,MAAM,CAAC;IACzB,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;IACjE,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,gCAAgC,CAAC;IACvE,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,yBAAyB,EAAE,eAAe,EAAE,oBAAoB,EAAE,gBAAgB,EAAE,OAAO,CAAC,CAAC;CAC5G,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,CAAC,MAAM,CAAC;IACtC,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6DAA6D,CAAC;IAClG,WAAW,EAAE,CAAC,CAAC,MAAM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package/dist/index.d.ts

@@ -30,9 +30,15 @@ export { OpenCitationsCitationGraphProvider } from "./sources/opencitations/cita
 export { getReferences as cociGetReferences, getCitations as cociGetCitations, } from "./sources/opencitations/client";
 export { searchPapers as s2SearchPapers, getPaperDetails as s2GetPaperDetails, getPaperReferences as s2GetPaperReferences, getPaperCitations as s2GetPaperCitations, } from "./sources/semantic-scholar/client";
 export type { S2Paper, S2Author, S2ExternalIds, S2SearchResponse, S2CitationEdge, S2CitationResponse, S2ClientOpts, } from "./sources/semantic-scholar/client";
-export type { PaperDigest, HypothesisSet, Hypothesis } from "./analysis/schemas";
-export { PaperDigestSchema, HypothesisSetSchema } from "./analysis/schemas";
+export type { PaperDigest, HypothesisSet, Hypothesis, PursueBy, Landscape, PaperRole, DiscoveryQuery, DiscoveryQuerySet } from "./analysis/schemas";
+export { PaperDigestSchema, HypothesisSetSchema, LandscapeSchema, DiscoveryQuerySetSchema } from "./analysis/schemas";
 export { extractFindings } from "./analysis/extract-findings";
 export { generateHypotheses } from "./analysis/generate-hypotheses";
+export { generateLandscape } from "./analysis/generate-landscape";
+export type { GenerateLandscapeOptions } from "./analysis/generate-landscape";
+export { buildMapPrompt } from "./analysis/prompts";
+export type { PreparedPaper } from "./analysis/prompts";
+export { generateDiscoveryQueries } from "./analysis/generate-discovery-queries";
+export type { SeedContext, GenerateDiscoveryQueriesOptions } from "./analysis/generate-discovery-queries";
 export { getBlocksByCategory } from "./analysis/block-filter";
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -29,8 +29,11 @@ export { OpenCitationsCitationGraphProvider } from "./sources/opencitations/cita
 export { getReferences as cociGetReferences, getCitations as cociGetCitations, } from "./sources/opencitations/client";
 // ── Sources: Semantic Scholar (legacy, retained for ingest paths) ──
 export { searchPapers as s2SearchPapers, getPaperDetails as s2GetPaperDetails, getPaperReferences as s2GetPaperReferences, getPaperCitations as s2GetPaperCitations, } from "./sources/semantic-scholar/client";
-export { PaperDigestSchema, HypothesisSetSchema } from "./analysis/schemas";
+export { PaperDigestSchema, HypothesisSetSchema, LandscapeSchema, DiscoveryQuerySetSchema } from "./analysis/schemas";
 export { extractFindings } from "./analysis/extract-findings";
 export { generateHypotheses } from "./analysis/generate-hypotheses";
+export { generateLandscape } from "./analysis/generate-landscape";
+export { buildMapPrompt } from "./analysis/prompts";
+export { generateDiscoveryQueries } from "./analysis/generate-discovery-queries";
 export { getBlocksByCategory } from "./analysis/block-filter";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,iCAAiC;AAEjC,sEAAsE;AACtE,cAAc,gBAAgB,CAAC;AAC/B,cAAc,kBAAkB,CAAC;AAEjC,sEAAsE;AACtE,OAAO,EAAE,aAAa,EAAE,oBAAoB,EAAE,MAAM,gBAAgB,CAAC;AAsCrE,sEAAsE;AACtE,OAAO,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AAIzC,OAAO,EACL,YAAY,EACZ,SAAS,EACT,aAAa,EACb,cAAc,EACd,gBAAgB,EAChB,mBAAmB,GACpB,MAAM,gCAAgC,CAAC;AACxC,OAAO,EAAE,6BAA6B,EAAE,MAAM,0BAA0B,CAAC;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AAEvE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAGhE,sEAAsE;AACtE,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,oBAAoB,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAC3E,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,OAAO,EACL,eAAe,EACf,mBAAmB,EACnB,mBAAmB,EACnB,4BAA4B,GAC7B,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC;AAEpD,sEAAsE;AACtE,OAAO,EACL,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,uCAAuC,CAAC;AAe/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,sBAAsB,CAAC;AACxD,OAAO,EACL,cAAc,EACd,eAAe,EACf,cAAc,GACf,MAAM,qBAAqB,CAAC;AAG7B,oEAAoE;AACpE,OAAO,EAAE,gBAAgB,EAAE,MAAM,6BAA6B,CAAC;AAC/D,OAAO,EAAE,uBAAuB,EAAE,MAAM,6BAA6B,CAAC;AACtE,OAAO,EACL,WAAW,IAAI,mBAAmB,EAClC,YAAY,IAAI,oBAAoB,EACpC,kBAAkB,IAAI,oBAAoB,GAC3C,MAAM,2BAA2B,CAAC;AAOnC,mEAAmE;AACnE,OAAO,EAAE,kCAAkC,EAAE,MAAM,iDAAiD,CAAC;AACrG,OAAO,EACL,aAAa,IAAI,iBAAiB,EAClC,YAAY,IAAI,gBAAgB,GACjC,MAAM,gCAAgC,CAAC;AAExC,sEAAsE;AACtE,OAAO,EACL,YAAY,IAAI,cAAc,EAC9B,eAAe,IAAI,iBAAiB,EACpC,kBAAkB,IAAI,oBAAoB,EAC1C,iBAAiB,IAAI,mBAAmB,GACzC,MAAM,mCAAmC,CAAC;AAa3C,OAAO,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,eAAe,EAAE,uBAAuB,EAAE,MAAM,oBAAoB,CAAC;AACtH,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,OAAO,EAAE,kBAAkB,EAAE,MAAM,gCAAgC,CAAC;AACpE,OAAO,EAAE,iBAAiB,EAAE,MAAM,+BAA+B,CAAC;AAElE,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAEpD,OAAO,EAAE,wBAAwB,EAAE,MAAM,uCAAuC,CAAC;AAEjF,OAAO,EAAE,mBAAmB,EAAE,MAAM,yBAAyB,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mantra-ai/core",
-  "version": "0.6.1",
+  "version": "0.7.0",
   "private": false,
   "type": "module",
   "main": "./dist/index.js",