@mantra-ai/core 0.1.2 → 0.1.5

package/dist/types/work.js

@@ -259,72 +259,4 @@ export function createWorkObject(data, view = "short") {
     };
     return baseWork;
 }
-// Helper function to transform Prisma Work record to WorkCore
-export function transformPrismaWorkToWorkObject(prismaWork, options = {}) {
-    const { includeVersions = true, // Always include versions
-    // includeContributors = true, // Removed
-    selectedVersion = null, // Selected version (or latest if none specified)
-    versionsToInclude = [], 
-    // metadata, // Removed
-    // result, // Removed - no longer needed with expand=all
-    jobId, idempotencyKey, correlationId, } = options;
-    const workObject = {
-        public_id: prismaWork.publicId,
-        title: prismaWork.title,
-        abstract: prismaWork.abstract,
-        ids: {
-            doi: prismaWork.doi,
-            pmid: prismaWork.pmid,
-            pmcid: prismaWork.pmcid,
-            arxiv_id: prismaWork.arxivId,
-            biorxiv_id: prismaWork.biorxivId,
-            medrxiv_id: prismaWork.medrxivId,
-            openalex_id: prismaWork.openalexId,
-        },
-        landing_url: prismaWork.landingUrl,
-        is_open_access: prismaWork.isOpenAccess,
-        best_license: prismaWork.bestLicense,
-        first_published_at: prismaWork.firstPublishedAt?.toISOString() || null,
-        latest_released_at: prismaWork.latestReleasedAt?.toISOString() || null,
-        created_at: prismaWork.createdAt.toISOString(),
-        updated_at: prismaWork.updatedAt.toISOString(),
-        versions: [], // Will be populated below
-        // contributors: [], // Removed - contributors relation is commented out in schema
-        _links: {
-            self: `/v1/work/${prismaWork.publicId}`,
-            versions: `/v1/work/${prismaWork.publicId}/versions`,
-            // latest_version: prismaWork.latestVersionId ? `/v1/work/${prismaWork.publicId}/versions/latest` : undefined,
-        },
-    };
-    // Always populate versions array with specified versions
-    if (includeVersions && versionsToInclude && versionsToInclude.length > 0) {
-        workObject.versions = versionsToInclude.map((version) => ({
-            id: version.id,
-            version_label: version.version_label,
-            doi: version.doi,
-            released_at: version.released_at,
-            previous_version_id: version.previous_version_id,
-            schema_version: version.schema_version,
-            open_access: version.open_access,
-            license: version.license,
-            ingested: version.ingested,
-            normalized: version.normalized,
-        }));
-    }
-    else {
-        // If no versions found, set empty array
-        workObject.versions = [];
-    }
-    // Contributors removed - contributors relation is commented out in schema
-    // if (includeContributors && prismaWork.contributors) {
-    //   workObject.contributors = prismaWork.contributors.map(
-    //     (contributor: any) => ({
-    //       agent_id: contributor.agentId,
-    //       role: contributor.role,
-    //       author_order: contributor.authorOrder,
-    //     })
-    //   );
-    // }
-    return workObject;
-}
 //# sourceMappingURL=work.js.map

package/dist/types/work.js.map

@@ -1 +1 @@
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package/dist/works/export/paper-formats.d.ts

@@ -0,0 +1,29 @@
+/**
+ * Pure paper-format serializers for BibTeX, JSON, and CSV export.
+ * No store/database dependency — operates on a minimal input interface.
+ */
+/**
+ * Minimal paper shape required by serializers.
+ * Structurally compatible with Paper from @drylab/store.
+ */
+export interface ExportablePaper {
+    id: number | string;
+    title: string | null;
+    doi: string | null;
+    pmid: string | null;
+    pmcid: string | null;
+    arxivId: string | null;
+    journal: string | null;
+    publishedDate: string | null;
+    source: string;
+    license: string | null;
+    authorsJson?: string | null;
+}
+export declare function escapeLatex(s: string): string;
+export declare function generateBibtexKey(paper: ExportablePaper, index: number): string;
+export declare function paperToBibtex(paper: ExportablePaper, index: number): string;
+export declare function paperToJsonObj(paper: ExportablePaper): Record<string, unknown>;
+export declare function csvEscape(s: string | null): string;
+export declare const CSV_HEADER = "id,title,doi,pmid,pmcid,arxivId,journal,publishedDate,source";
+export declare function paperToCsv(paper: ExportablePaper): string;
+//# sourceMappingURL=paper-formats.d.ts.map

package/dist/works/export/paper-formats.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"paper-formats.d.ts","sourceRoot":"","sources":["../../../src/works/export/paper-formats.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,MAAM,GAAG,MAAM,CAAC;IACpB,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,GAAG,EAAE,MAAM,GAAG,IAAI,CAAC;IACnB,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACpB,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,aAAa,EAAE,MAAM,GAAG,IAAI,CAAC;IAC7B,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;CAC7B;AAID,wBAAgB,WAAW,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAI7C;AAED,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,eAAe,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,CAmB/E;AAED,wBAAgB,aAAa,CAAC,KAAK,EAAE,eAAe,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,CA4B3E;AAID,wBAAgB,cAAc,CAAC,KAAK,EAAE,eAAe,GAAG,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAa9E;AAID,wBAAgB,SAAS,CAAC,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,MAAM,CAMlD;AAED,eAAO,MAAM,UAAU,iEAAiE,CAAC;AAEzF,wBAAgB,UAAU,CAAC,KAAK,EAAE,eAAe,GAAG,MAAM,CAYzD"}

package/dist/works/export/paper-formats.js

@@ -0,0 +1,109 @@
+/**
+ * Pure paper-format serializers for BibTeX, JSON, and CSV export.
+ * No store/database dependency — operates on a minimal input interface.
+ */
+// ── LaTeX / BibTeX ──────────────────────────────────────────────────
+export function escapeLatex(s) {
+    return s
+        .replace(/\\/g, "\\textbackslash{}")
+        .replace(/[&%$#_{}~^]/g, (ch) => `\\${ch}`);
+}
+export function generateBibtexKey(paper, index) {
+    let author = "unknown";
+    if (paper.authorsJson) {
+        try {
+            const authors = JSON.parse(paper.authorsJson);
+            const first = Array.isArray(authors) ? authors[0] : null;
+            if (typeof first === "string") {
+                author = first.split(/[\s,]+/)[0]?.toLowerCase() ?? "unknown";
+            }
+            else if (first?.family) {
+                author = first.family.toLowerCase();
+            }
+            else if (first?.name) {
+                author = first.name.split(/[\s,]+/)[0]?.toLowerCase() ?? "unknown";
+            }
+        }
+        catch {
+            // keep default
+        }
+    }
+    const year = paper.publishedDate?.slice(0, 4) ?? "nd";
+    return `${author}${year}_${index}`;
+}
+export function paperToBibtex(paper, index) {
+    const key = generateBibtexKey(paper, index);
+    const fields = [];
+    if (paper.title)
+        fields.push(`  title     = {${escapeLatex(paper.title)}}`);
+    if (paper.authorsJson) {
+        try {
+            const authors = JSON.parse(paper.authorsJson);
+            if (Array.isArray(authors)) {
+                const names = authors.map((a) => {
+                    if (typeof a === "string")
+                        return a;
+                    if (a.family && a.given)
+                        return `${a.family}, ${a.given}`;
+                    return a.name ?? a.family ?? String(a);
+                });
+                fields.push(`  author    = {${escapeLatex(names.join(" and "))}}`);
+            }
+        }
+        catch {
+            // skip
+        }
+    }
+    if (paper.journal)
+        fields.push(`  journal   = {${escapeLatex(paper.journal)}}`);
+    if (paper.publishedDate)
+        fields.push(`  year      = {${paper.publishedDate.slice(0, 4)}}`);
+    if (paper.doi)
+        fields.push(`  doi       = {${paper.doi}}`);
+    if (paper.pmid)
+        fields.push(`  pmid      = {${paper.pmid}}`);
+    if (paper.pmcid)
+        fields.push(`  pmcid     = {${paper.pmcid}}`);
+    if (paper.arxivId)
+        fields.push(`  eprint    = {${paper.arxivId}}`);
+    return `@article{${key},\n${fields.join(",\n")}\n}`;
+}
+// ── JSON ────────────────────────────────────────────────────────────
+export function paperToJsonObj(paper) {
+    return {
+        id: paper.id,
+        title: paper.title,
+        doi: paper.doi,
+        pmid: paper.pmid,
+        pmcid: paper.pmcid,
+        arxivId: paper.arxivId,
+        journal: paper.journal,
+        publishedDate: paper.publishedDate,
+        source: paper.source,
+        license: paper.license,
+    };
+}
+// ── CSV ─────────────────────────────────────────────────────────────
+export function csvEscape(s) {
+    if (!s)
+        return "";
+    if (s.includes(",") || s.includes('"') || s.includes("\n")) {
+        return `"${s.replace(/"/g, '""')}"`;
+    }
+    return s;
+}
+export const CSV_HEADER = "id,title,doi,pmid,pmcid,arxivId,journal,publishedDate,source";
+export function paperToCsv(paper) {
+    return [
+        paper.id,
+        csvEscape(paper.title),
+        csvEscape(paper.doi),
+        csvEscape(paper.pmid),
+        csvEscape(paper.pmcid),
+        csvEscape(paper.arxivId),
+        csvEscape(paper.journal),
+        csvEscape(paper.publishedDate),
+        csvEscape(paper.source),
+    ].join(",");
+}
+//# sourceMappingURL=paper-formats.js.map

package/dist/works/export/paper-formats.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"paper-formats.js","sourceRoot":"","sources":["../../../src/works/export/paper-formats.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAoBH,uEAAuE;AAEvE,MAAM,UAAU,WAAW,CAAC,CAAS;IACnC,OAAO,CAAC;SACL,OAAO,CAAC,KAAK,EAAE,mBAAmB,CAAC;SACnC,OAAO,CAAC,cAAc,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;AAChD,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,KAAsB,EAAE,KAAa;IACrE,IAAI,MAAM,GAAG,SAAS,CAAC;IACvB,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC;QACtB,IAAI,CAAC;YACH,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC;YAC9C,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;YACzD,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE,CAAC;gBAC9B,MAAM,GAAG,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,EAAE,WAAW,EAAE,IAAI,SAAS,CAAC;YAChE,CAAC;iBAAM,IAAI,KAAK,EAAE,MAAM,EAAE,CAAC;gBACzB,MAAM,GAAG,KAAK,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC;YACtC,CAAC;iBAAM,IAAI,KAAK,EAAE,IAAI,EAAE,CAAC;gBACvB,MAAM,GAAG,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,EAAE,WAAW,EAAE,IAAI,SAAS,CAAC;YACrE,CAAC;QACH,CAAC;QAAC,MAAM,CAAC;YACP,eAAe;QACjB,CAAC;IACH,CAAC;IACD,MAAM,IAAI,GAAG,KAAK,CAAC,aAAa,EAAE,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,IAAI,CAAC;IACtD,OAAO,GAAG,MAAM,GAAG,IAAI,IAAI,KAAK,EAAE,CAAC;AACrC,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,KAAsB,EAAE,KAAa;IACjE,MAAM,GAAG,GAAG,iBAAiB,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IAC5C,MAAM,MAAM,GAAa,EAAE,CAAC;IAE5B,IAAI,KAAK,CAAC,KAAK;QAAE,MAAM,CAAC,IAAI,CAAC,kBAAkB,WAAW,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IAC5E,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC;QACtB,IAAI,CAAC;YACH,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC;YAC9C,IAAI,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;gBAC3B,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAM,EAAE,EAAE;oBACnC,IAAI,OAAO,CAAC,KAAK,QAAQ;wBAAE,OAAO,CAAC,CAAC;oBACpC,IAAI,CAAC,CAAC,MAAM,IAAI,CAAC,CAAC,KAAK;wBAAE,OAAO,GAAG,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;oBAC1D,OAAO,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,MAAM,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC;gBACzC,CAAC,CAAC,CAAC;gBACH,MAAM,CAAC,IAAI,CAAC,kBAAkB,WAAW,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC;YACrE,CAAC;QACH,CAAC;QAAC,MAAM,CAAC;YACP,OAAO;QACT,CAAC;IACH,CAAC;IACD,IAAI,KAAK,CAAC,OAAO;QAAE,MAAM,CAAC,IAAI,CAAC,kBAAkB,WAAW,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAChF,IAAI,KAAK,CAAC,aAAa;QAAE,MAAM,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,aAAa,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC;IAC3F,IAAI,KAAK,CAAC,GAAG;QAAE,MAAM,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC;IAC3D,IAAI,KAAK,CAAC,IAAI;QAAE,MAAM,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,IAAI,GAAG,CAAC,CAAC;IAC7D,IAAI,KAAK,CAAC,KAAK;QAAE,MAAM,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC;IAC/D,IAAI,KAAK,CAAC,OAAO;QAAE,MAAM,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC;IAEnE,OAAO,YAAY,GAAG,MAAM,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC;AACtD,CAAC;AAED,uEAAuE;AAEvE,MAAM,UAAU,cAAc,CAAC,KAAsB;IACnD,OAAO;QACL,EAAE,EAAE,KAAK,CAAC,EAAE;QACZ,KAAK,EAAE,KAAK,CAAC,KAAK;QAClB,GAAG,EAAE,KAAK,CAAC,GAAG;QACd,IAAI,EAAE,KAAK,CAAC,IAAI;QAChB,KAAK,EAAE,KAAK,CAAC,KAAK;QAClB,OAAO,EAAE,KAAK,CAAC,OAAO;QACtB,OAAO,EAAE,KAAK,CAAC,OAAO;QACtB,aAAa,EAAE,KAAK,CAAC,aAAa;QAClC,MAAM,EAAE,KAAK,CAAC,MAAM;QACpB,OAAO,EAAE,KAAK,CAAC,OAAO;KACvB,CAAC;AACJ,CAAC;AAED,uEAAuE;AAEvE,MAAM,UAAU,SAAS,CAAC,CAAgB;IACxC,IAAI,CAAC,CAAC;QAAE,OAAO,EAAE,CAAC;IAClB,IAAI,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC;QAC3D,OAAO,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC;IACtC,CAAC;IACD,OAAO,CAAC,CAAC;AACX,CAAC;AAED,MAAM,CAAC,MAAM,UAAU,GAAG,8DAA8D,CAAC;AAEzF,MAAM,UAAU,UAAU,CAAC,KAAsB;IAC/C,OAAO;QACL,KAAK,CAAC,EAAE;QACR,SAAS,CAAC,KAAK,CAAC,KAAK,CAAC;QACtB,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC;QACpB,SAAS,CAAC,KAAK,CAAC,IAAI,CAAC;QACrB,SAAS,CAAC,KAAK,CAAC,KAAK,CAAC;QACtB,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC;QACxB,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC;QACxB,SAAS,CAAC,KAAK,CAAC,aAAa,CAAC;QAC9B,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC;KACxB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AACd,CAAC"}

package/dist/works/util/paper-metadata.d.ts

@@ -0,0 +1,56 @@
+import type { ActionsExternalType, CompleteIds } from "../types";
+/**
+ * Metadata fields derived from CompleteIds for paper storage.
+ * Structurally compatible with PaperInsert from @drylab/store
+ * without creating a dependency on the store package.
+ */
+export interface PaperMetadataFromIds {
+    doi: string | null;
+    pmid: string | null;
+    pmcid: string | null;
+    arxivId: string | null;
+    biorxivId: string | null;
+    medrxivId: string | null;
+    source: string;
+    title: string | null;
+    abstract: string | null;
+    publishedDate: string | null;
+    journal: string | null;
+    license: string | null;
+}
+/**
+ * Map resolved CompleteIds to flat paper metadata fields.
+ * Pure, side-effect-free mapping with null defaults.
+ */
+export declare function paperMetadataFromIds(ids: CompleteIds): PaperMetadataFromIds;
+/** Minimal shape for objects that carry paper identifier fields. */
+export interface PaperIdentifierFields {
+    doi?: string | null;
+    pmid?: string | null;
+    pmcid?: string | null;
+    arxivId?: string | null;
+}
+/**
+ * Pick the best external identifier for re-resolution.
+ * Precedence: DOI → PMID → PMCID → arXiv ID.
+ */
+export declare function pickResolvableId(paper: PaperIdentifierFields): {
+    idType: ActionsExternalType;
+    rawId: string;
+} | null;
+/** Canonical set of metadata fields compared during updates. */
+declare const DIFF_FIELDS: readonly ["title", "doi", "pmid", "pmcid", "arxivId", "biorxivId", "medrxivId", "abstract", "journal", "publishedDate", "license", "source"];
+/**
+ * Compare two paper records and return the list of changed metadata field names.
+ * Preserves field ordering for stable output.
+ */
+export declare function diffPaperFields<T extends {
+    [K in typeof DIFF_FIELDS[number]]?: unknown;
+}>(before: T, after: T): string[];
+/**
+ * Build a normalized filename for a paper artifact.
+ * DOI slashes are replaced with underscores; falls back to paper_{id}.
+ */
+export declare function paperFileName(doi: string | null | undefined, paperId: number | string): string;
+export {};
+//# sourceMappingURL=paper-metadata.d.ts.map

package/dist/works/util/paper-metadata.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"paper-metadata.d.ts","sourceRoot":"","sources":["../../../src/works/util/paper-metadata.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,mBAAmB,EAAE,WAAW,EAAE,MAAM,UAAU,CAAC;AAEjE;;;;GAIG;AACH,MAAM,WAAW,oBAAoB;IACnC,GAAG,EAAE,MAAM,GAAG,IAAI,CAAC;IACnB,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACpB,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IACzB,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IACzB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,aAAa,EAAE,MAAM,GAAG,IAAI,CAAC;IAC7B,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;CACxB;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,WAAW,GAAG,oBAAoB,CAe3E;AAID,oEAAoE;AACpE,MAAM,WAAW,qBAAqB;IACpC,GAAG,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IACpB,IAAI,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,CAC9B,KAAK,EAAE,qBAAqB,GAC3B;IAAE,MAAM,EAAE,mBAAmB,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,GAAG,IAAI,CAMvD;AAID,gEAAgE;AAChE,QAAA,MAAM,WAAW,8IAGP,CAAC;AAEX;;;GAGG;AACH,wBAAgB,eAAe,CAAC,CAAC,SAAS;KAAG,CAAC,IAAI,OAAO,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,OAAO;CAAE,EACvF,MAAM,EAAE,CAAC,EACT,KAAK,EAAE,CAAC,GACP,MAAM,EAAE,CAQV;AAID;;;GAGG;AACH,wBAAgB,aAAa,CAC3B,GAAG,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,EAC9B,OAAO,EAAE,MAAM,GAAG,MAAM,GACvB,MAAM,CAKR"}

package/dist/works/util/paper-metadata.js

@@ -0,0 +1,66 @@
+/**
+ * Map resolved CompleteIds to flat paper metadata fields.
+ * Pure, side-effect-free mapping with null defaults.
+ */
+export function paperMetadataFromIds(ids) {
+    return {
+        doi: ids.doi ?? null,
+        pmid: ids.pmid ?? null,
+        pmcid: ids.pmcid ?? null,
+        arxivId: ids.arxivId ?? null,
+        biorxivId: ids.biorxivId ?? null,
+        medrxivId: ids.medrxivId ?? null,
+        source: ids.sourceKind ?? "other",
+        title: ids.title ?? null,
+        abstract: ids.abstract ?? null,
+        publishedDate: ids.firstPublishedAt ?? null,
+        journal: ids.journal ?? null,
+        license: ids.bestLicense ?? null,
+    };
+}
+/**
+ * Pick the best external identifier for re-resolution.
+ * Precedence: DOI → PMID → PMCID → arXiv ID.
+ */
+export function pickResolvableId(paper) {
+    if (paper.doi)
+        return { idType: "doi", rawId: paper.doi };
+    if (paper.pmid)
+        return { idType: "pmid", rawId: paper.pmid };
+    if (paper.pmcid)
+        return { idType: "pmcid", rawId: paper.pmcid };
+    if (paper.arxivId)
+        return { idType: "arxivId", rawId: paper.arxivId };
+    return null;
+}
+// ── Metadata diff ───────────────────────────────────────────────────
+/** Canonical set of metadata fields compared during updates. */
+const DIFF_FIELDS = [
+    "title", "doi", "pmid", "pmcid", "arxivId", "biorxivId", "medrxivId",
+    "abstract", "journal", "publishedDate", "license", "source",
+];
+/**
+ * Compare two paper records and return the list of changed metadata field names.
+ * Preserves field ordering for stable output.
+ */
+export function diffPaperFields(before, after) {
+    const changed = [];
+    for (const key of DIFF_FIELDS) {
+        if (before[key] !== after[key]) {
+            changed.push(key);
+        }
+    }
+    return changed;
+}
+// ── Filename convention ─────────────────────────────────────────────
+/**
+ * Build a normalized filename for a paper artifact.
+ * DOI slashes are replaced with underscores; falls back to paper_{id}.
+ */
+export function paperFileName(doi, paperId) {
+    if (doi) {
+        return `${doi.replace(/\//g, "_")}.json`;
+    }
+    return `paper_${paperId}.json`;
+}
+//# sourceMappingURL=paper-metadata.js.map

package/dist/works/util/paper-metadata.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"paper-metadata.js","sourceRoot":"","sources":["../../../src/works/util/paper-metadata.ts"],"names":[],"mappings":"AAsBA;;;GAGG;AACH,MAAM,UAAU,oBAAoB,CAAC,GAAgB;IACnD,OAAO;QACL,GAAG,EAAE,GAAG,CAAC,GAAG,IAAI,IAAI;QACpB,IAAI,EAAE,GAAG,CAAC,IAAI,IAAI,IAAI;QACtB,KAAK,EAAE,GAAG,CAAC,KAAK,IAAI,IAAI;QACxB,OAAO,EAAE,GAAG,CAAC,OAAO,IAAI,IAAI;QAC5B,SAAS,EAAE,GAAG,CAAC,SAAS,IAAI,IAAI;QAChC,SAAS,EAAE,GAAG,CAAC,SAAS,IAAI,IAAI;QAChC,MAAM,EAAE,GAAG,CAAC,UAAU,IAAI,OAAO;QACjC,KAAK,EAAE,GAAG,CAAC,KAAK,IAAI,IAAI;QACxB,QAAQ,EAAE,GAAG,CAAC,QAAQ,IAAI,IAAI;QAC9B,aAAa,EAAE,GAAG,CAAC,gBAAgB,IAAI,IAAI;QAC3C,OAAO,EAAE,GAAG,CAAC,OAAO,IAAI,IAAI;QAC5B,OAAO,EAAE,GAAG,CAAC,WAAW,IAAI,IAAI;KACjC,CAAC;AACJ,CAAC;AAYD;;;GAGG;AACH,MAAM,UAAU,gBAAgB,CAC9B,KAA4B;IAE5B,IAAI,KAAK,CAAC,GAAG;QAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,CAAC,GAAG,EAAE,CAAC;IAC1D,IAAI,KAAK,CAAC,IAAI;QAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC;IAC7D,IAAI,KAAK,CAAC,KAAK;QAAE,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC;IAChE,IAAI,KAAK,CAAC,OAAO;QAAE,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC;IACtE,OAAO,IAAI,CAAC;AACd,CAAC;AAED,uEAAuE;AAEvE,gEAAgE;AAChE,MAAM,WAAW,GAAG;IAClB,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,WAAW;IACpE,UAAU,EAAE,SAAS,EAAE,eAAe,EAAE,SAAS,EAAE,QAAQ;CACnD,CAAC;AAEX;;;GAGG;AACH,MAAM,UAAU,eAAe,CAC7B,MAAS,EACT,KAAQ;IAER,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,KAAK,MAAM,GAAG,IAAI,WAAW,EAAE,CAAC;QAC9B,IAAI,MAAM,CAAC,GAAG,CAAC,KAAK,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC;YAC/B,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACpB,CAAC;IACH,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,uEAAuE;AAEvE;;;GAGG;AACH,MAAM,UAAU,aAAa,CAC3B,GAA8B,EAC9B,OAAwB;IAExB,IAAI,GAAG,EAAE,CAAC;QACR,OAAO,GAAG,GAAG,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC;IAC3C,CAAC;IACD,OAAO,SAAS,OAAO,OAAO,CAAC;AACjC,CAAC"}

package/dist/works/util/retry.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Generic async retry with exponential backoff.
+ * Not HTTP-specific — any async operation can use this.
+ */
+export interface RetryOptions {
+    /** Maximum number of attempts (default: 3). */
+    maxAttempts?: number;
+    /** Base delay in ms before first retry (default: 1000). */
+    baseDelayMs?: number;
+    /**
+     * Predicate that returns true if an error is permanent and should not be retried.
+     * Defaults to matching common HTTP client-error patterns.
+     */
+    isPermanent?: (error: string) => boolean;
+}
+/**
+ * Check if an error message matches a permanent failure pattern.
+ */
+export declare function isPermanentError(message: string, patterns?: RegExp[]): boolean;
+/**
+ * Retry an async operation with exponential backoff.
+ * Does not retry on permanent failures.
+ */
+export declare function withRetry<T>(fn: () => Promise<T>, opts?: RetryOptions): Promise<T>;
+//# sourceMappingURL=retry.d.ts.map

package/dist/works/util/retry.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"retry.d.ts","sourceRoot":"","sources":["../../../src/works/util/retry.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAWH,MAAM,WAAW,YAAY;IAC3B,+CAA+C;IAC/C,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,2DAA2D;IAC3D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB;;;OAGG;IACH,WAAW,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC;CAC1C;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAC9B,OAAO,EAAE,MAAM,EACf,QAAQ,GAAE,MAAM,EAA+B,GAC9C,OAAO,CAET;AAED;;;GAGG;AACH,wBAAsB,SAAS,CAAC,CAAC,EAC/B,EAAE,EAAE,MAAM,OAAO,CAAC,CAAC,CAAC,EACpB,IAAI,CAAC,EAAE,YAAY,GAClB,OAAO,CAAC,CAAC,CAAC,CAuBZ"}

package/dist/works/util/retry.js

@@ -0,0 +1,45 @@
+/**
+ * Generic async retry with exponential backoff.
+ * Not HTTP-specific — any async operation can use this.
+ */
+/** Patterns matching errors that should not be retried. */
+const DEFAULT_PERMANENT_PATTERNS = [
+    /not found/i,
+    /invalid/i,
+    /400/,
+    /404/,
+    /422/,
+];
+/**
+ * Check if an error message matches a permanent failure pattern.
+ */
+export function isPermanentError(message, patterns = DEFAULT_PERMANENT_PATTERNS) {
+    return patterns.some((p) => p.test(message));
+}
+/**
+ * Retry an async operation with exponential backoff.
+ * Does not retry on permanent failures.
+ */
+export async function withRetry(fn, opts) {
+    const maxAttempts = opts?.maxAttempts ?? 3;
+    const baseDelay = opts?.baseDelayMs ?? 1000;
+    const checkPermanent = opts?.isPermanent ?? ((msg) => isPermanentError(msg));
+    let lastError;
+    for (let attempt = 1; attempt <= maxAttempts; attempt++) {
+        try {
+            return await fn();
+        }
+        catch (e) {
+            lastError = e;
+            const message = e instanceof Error ? e.message : String(e);
+            if (checkPermanent(message))
+                throw e;
+            if (attempt === maxAttempts)
+                throw e;
+            const delay = baseDelay * Math.pow(2, attempt - 1);
+            await new Promise((r) => setTimeout(r, delay));
+        }
+    }
+    throw lastError;
+}
+//# sourceMappingURL=retry.js.map

package/dist/works/util/retry.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"retry.js","sourceRoot":"","sources":["../../../src/works/util/retry.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,2DAA2D;AAC3D,MAAM,0BAA0B,GAAG;IACjC,YAAY;IACZ,UAAU;IACV,KAAK;IACL,KAAK;IACL,KAAK;CACN,CAAC;AAcF;;GAEG;AACH,MAAM,UAAU,gBAAgB,CAC9B,OAAe,EACf,WAAqB,0BAA0B;IAE/C,OAAO,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC;AAC/C,CAAC;AAED;;;GAGG;AACH,MAAM,CAAC,KAAK,UAAU,SAAS,CAC7B,EAAoB,EACpB,IAAmB;IAEnB,MAAM,WAAW,GAAG,IAAI,EAAE,WAAW,IAAI,CAAC,CAAC;IAC3C,MAAM,SAAS,GAAG,IAAI,EAAE,WAAW,IAAI,IAAI,CAAC;IAC5C,MAAM,cAAc,GAAG,IAAI,EAAE,WAAW,IAAI,CAAC,CAAC,GAAW,EAAE,EAAE,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAC,CAAC;IAErF,IAAI,SAAkB,CAAC;IAEvB,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,IAAI,WAAW,EAAE,OAAO,EAAE,EAAE,CAAC;QACxD,IAAI,CAAC;YACH,OAAO,MAAM,EAAE,EAAE,CAAC;QACpB,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,SAAS,GAAG,CAAC,CAAC;YACd,MAAM,OAAO,GAAG,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;YAE3D,IAAI,cAAc,CAAC,OAAO,CAAC;gBAAE,MAAM,CAAC,CAAC;YACrC,IAAI,OAAO,KAAK,WAAW;gBAAE,MAAM,CAAC,CAAC;YAErC,MAAM,KAAK,GAAG,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,OAAO,GAAG,CAAC,CAAC,CAAC;YACnD,MAAM,IAAI,OAAO,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC;QACjD,CAAC;IACH,CAAC;IAED,MAAM,SAAS,CAAC;AAClB,CAAC"}

package/dist/works/util/zotero-parsers.d.ts

@@ -0,0 +1,20 @@
+/**
+ * Pure parsers for Zotero configuration files.
+ * No filesystem or database I/O — only string parsing.
+ */
+export interface ZoteroProfile {
+    name: string;
+    path: string;
+    isRelative: boolean;
+}
+/**
+ * Parse a Zotero profiles.ini file into profile entries.
+ * Each entry has a name, path, and isRelative flag.
+ */
+export declare function parseProfilesIni(content: string): ZoteroProfile[];
+/**
+ * Parse a Zotero prefs.js file into a key-value map.
+ * Only extracts string-valued user_pref entries.
+ */
+export declare function parsePrefsJs(content: string): Record<string, string>;
+//# sourceMappingURL=zotero-parsers.d.ts.map

package/dist/works/util/zotero-parsers.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"zotero-parsers.d.ts","sourceRoot":"","sources":["../../../src/works/util/zotero-parsers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,OAAO,CAAC;CACrB;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,GAAG,aAAa,EAAE,CAoBjE;AAED;;;GAGG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAWpE"}

package/dist/works/util/zotero-parsers.js

@@ -0,0 +1,48 @@
+/**
+ * Pure parsers for Zotero configuration files.
+ * No filesystem or database I/O — only string parsing.
+ */
+/**
+ * Parse a Zotero profiles.ini file into profile entries.
+ * Each entry has a name, path, and isRelative flag.
+ */
+export function parseProfilesIni(content) {
+    const profiles = [];
+    let current = {};
+    for (const line of content.split("\n")) {
+        const trimmed = line.trim();
+        if (trimmed.startsWith("[Profile")) {
+            if (current.path)
+                profiles.push(current);
+            current = {};
+        }
+        else if (trimmed.startsWith("Name=")) {
+            current.name = trimmed.slice("Name=".length);
+        }
+        else if (trimmed.startsWith("Path=")) {
+            current.path = trimmed.slice("Path=".length);
+        }
+        else if (trimmed.startsWith("IsRelative=")) {
+            current.isRelative = trimmed.slice("IsRelative=".length) === "1";
+        }
+    }
+    if (current.path)
+        profiles.push(current);
+    return profiles;
+}
+/**
+ * Parse a Zotero prefs.js file into a key-value map.
+ * Only extracts string-valued user_pref entries.
+ */
+export function parsePrefsJs(content) {
+    const prefs = {};
+    const re = /^user_pref\("([^"]+)",\s*"([^"]*)"\);/;
+    for (const line of content.split("\n")) {
+        const m = line.match(re);
+        if (m) {
+            prefs[m[1]] = m[2];
+        }
+    }
+    return prefs;
+}
+//# sourceMappingURL=zotero-parsers.js.map

package/dist/works/util/zotero-parsers.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"zotero-parsers.js","sourceRoot":"","sources":["../../../src/works/util/zotero-parsers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAQH;;;GAGG;AACH,MAAM,UAAU,gBAAgB,CAAC,OAAe;IAC9C,MAAM,QAAQ,GAAoB,EAAE,CAAC;IACrC,IAAI,OAAO,GAA2B,EAAE,CAAC;IAEzC,KAAK,MAAM,IAAI,IAAI,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;QACvC,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC;QAC5B,IAAI,OAAO,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;YACnC,IAAI,OAAO,CAAC,IAAI;gBAAE,QAAQ,CAAC,IAAI,CAAC,OAAwB,CAAC,CAAC;YAC1D,OAAO,GAAG,EAAE,CAAC;QACf,CAAC;aAAM,IAAI,OAAO,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;YACvC,OAAO,CAAC,IAAI,GAAG,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAC/C,CAAC;aAAM,IAAI,OAAO,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;YACvC,OAAO,CAAC,IAAI,GAAG,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAC/C,CAAC;aAAM,IAAI,OAAO,CAAC,UAAU,CAAC,aAAa,CAAC,EAAE,CAAC;YAC7C,OAAO,CAAC,UAAU,GAAG,OAAO,CAAC,KAAK,CAAC,aAAa,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC;QACnE,CAAC;IACH,CAAC;IACD,IAAI,OAAO,CAAC,IAAI;QAAE,QAAQ,CAAC,IAAI,CAAC,OAAwB,CAAC,CAAC;IAE1D,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,YAAY,CAAC,OAAe;IAC1C,MAAM,KAAK,GAA2B,EAAE,CAAC;IACzC,MAAM,EAAE,GAAG,uCAAuC,CAAC;IAEnD,KAAK,MAAM,IAAI,IAAI,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;QACvC,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QACzB,IAAI,CAAC,EAAE,CAAC;YACN,KAAK,CAAC,CAAC,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAE,CAAC;QACvB,CAAC;IACH,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mantra-ai/core",
-  "version": "0.1.2",
+  "version": "0.1.5",
   "private": false,
   "type": "module",
   "main": "./dist/index.js",
@@ -34,10 +34,13 @@
     "./works/strategies/*": "./src/works/strategies/*.ts",
     "./works/adapters/*": "./src/works/adapters/*.ts",
     "./works/text/*": "./src/works/text/*.ts",
+    "./works/export/*": "./src/works/export/*.ts",
     "./works/util/*": "./src/works/util/*.ts",
     "./works/*": "./src/works/*.ts",
     "./sources/*": "./src/sources/*.ts",
     "./types/*": "./src/types/*.ts",
+    "./analysis": "./src/analysis/index.ts",
+    "./analysis/*": "./src/analysis/*.ts",
     "./*": "./src/*.ts"
   },
   "publishConfig": {
@@ -157,6 +160,10 @@
         "types": "./dist/works/text/*.d.ts",
         "import": "./dist/works/text/*.js"
       },
+      "./works/export/*": {
+        "types": "./dist/works/export/*.d.ts",
+        "import": "./dist/works/export/*.js"
+      },
       "./works/util/*": {
         "types": "./dist/works/util/*.d.ts",
         "import": "./dist/works/util/*.js"
@@ -173,6 +180,14 @@
         "types": "./dist/types/*.d.ts",
         "import": "./dist/types/*.js"
       },
+      "./analysis": {
+        "types": "./dist/analysis/index.d.ts",
+        "import": "./dist/analysis/index.js"
+      },
+      "./analysis/*": {
+        "types": "./dist/analysis/*.d.ts",
+        "import": "./dist/analysis/*.js"
+      },
       "./*": {
         "types": "./dist/*.d.ts",
         "import": "./dist/*.js"