@mangold/rvault 0.1.0

package/LICENSE

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+MIT License
+
+Copyright (c) 2026
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

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+# rvault
+
+CLI tool for the **Research Vault** — a self-governing autonomous research
+system for coding agents. Converts idle agent capacity into decision-ready
+knowledge.
+
+## Install
+
+```bash
+npm install -g rvault
+```
+
+Or use without installing:
+
+```bash
+npx rvault init
+```
+
+## Quick Start
+
+```bash
+# 1. Initialize a vault in your project
+cd your-project
+rvault init
+
+# 2. Open Claude Code (restart if already open so it discovers the new skills)
+
+# 3. Run the vault
+# Inside Claude Code: /vault
+# Or from terminal: rvault run
+```
+
+## Commands
+
+| Command | What it does |
+|---------|-------------|
+| `rvault init` | Scaffold a Research Vault in the current project |
+| `rvault upgrade` | Upgrade infrastructure files to the latest template |
+| `rvault version` | Show installed and available versions |
+| `rvault status` | Quick vault status (free, no tokens) |
+| `rvault doctor` | Diagnostic checks for vault health |
+| `rvault run` | Run a vault cycle via `claude -p` |
+
+## Claude Code Skills
+
+Once the vault is installed, these skills are available inside Claude Code:
+
+| Skill | What it does |
+|-------|-------------|
+| `/vault` | Run a research cycle |
+| `/vault-status` | Quick check-in (counters, queue, attention items) |
+| `/vault-ideas` | Browse and act on idea proposals |
+| `/vault-queue` | View, add, reprioritize research topics |
+| `/vault-decide` | Record a decision informed by vault research |
+| `/vault-review` | Full catch-up after being away |
+| `/vault-audit` | Challenge claims with the adversarial auditor |
+| `/vault-fieldnote` | Log a development outcome back to the vault |
+
+## Upgrading
+
+```bash
+# Check if an upgrade is available
+rvault version
+
+# Upgrade — unmodified files are replaced silently.
+# Files you've modified are flagged for LLM-assisted three-way merge.
+rvault upgrade
+
+# Auto-merge modified files via Claude Code
+rvault upgrade --auto
+
+# Review each merge before applying
+rvault upgrade --review
+```
+
+## Architecture
+
+See `templates/research-vault/VAULT_CONSTITUTION.md` and
+`templates/research-vault/VAULT_PROTOCOL.md` for the full system design.
+
+## License
+
+MIT

package/dist/commands/doctor.d.ts

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+interface DoctorOptions {
+    json?: boolean;
+    fix?: boolean;
+}
+export declare function doctorCommand(options: DoctorOptions): Promise<void>;
+export {};
+//# sourceMappingURL=doctor.d.ts.map

package/dist/commands/doctor.d.ts.map

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+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/commands/doctor.ts"],"names":[],"mappings":"AASA,UAAU,aAAa;IACrB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AASD,wBAAsB,aAAa,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC,CAmDzE"}

package/dist/commands/doctor.js

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+import { join } from "node:path";
+import { readFile, readdir } from "node:fs/promises";
+import chalk from "chalk";
+import { detectVault } from "../lib/detect.js";
+import { getManifest } from "../lib/template.js";
+import { readVaultVersion } from "../lib/version-file.js";
+import { fileExists } from "../lib/files.js";
+import { hashFile } from "../lib/checksum.js";
+export async function doctorCommand(options) {
+    const projectDir = process.cwd();
+    const detection = await detectVault(projectDir);
+    if (detection.status === "none") {
+        console.log(chalk.yellow("No vault found. Run `rvault init` first."));
+        return;
+    }
+    const results = [];
+    // Run all checks
+    await checkInfrastructureFiles(projectDir, results);
+    await checkVersionConsistency(projectDir, results);
+    await checkConstitutionReferences(projectDir, results);
+    await checkDeprecatedPatterns(projectDir, results);
+    await checkOrphanedQueueItems(projectDir, results);
+    await checkInboxStaleness(projectDir, results);
+    await checkDirectoryStructure(projectDir, results);
+    if (options.json) {
+        console.log(JSON.stringify(results, null, 2));
+        return;
+    }
+    // Display results
+    console.log(chalk.bold("Vault Doctor\n"));
+    const severityOrder = { critical: 0, high: 1, medium: 2, low: 3 };
+    results.sort((a, b) => severityOrder[a.severity] - severityOrder[b.severity]);
+    let hasIssues = false;
+    for (const r of results) {
+        const icon = r.passed ? chalk.green("PASS") : severityIcon(r.severity);
+        console.log(`  ${icon}  ${r.message}`);
+        if (!r.passed)
+            hasIssues = true;
+    }
+    console.log();
+    if (hasIssues) {
+        const critCount = results.filter((r) => !r.passed && r.severity === "critical").length;
+        const warnCount = results.filter((r) => !r.passed && r.severity !== "critical").length;
+        if (critCount > 0) {
+            console.log(chalk.red(`${critCount} critical issue(s) found.`));
+        }
+        if (warnCount > 0) {
+            console.log(chalk.yellow(`${warnCount} warning(s).`));
+        }
+    }
+    else {
+        console.log(chalk.green("All checks passed."));
+    }
+}
+function severityIcon(severity) {
+    switch (severity) {
+        case "critical":
+            return chalk.red("CRIT");
+        case "high":
+            return chalk.red("HIGH");
+        case "medium":
+            return chalk.yellow("WARN");
+        case "low":
+            return chalk.dim("LOW ");
+        default:
+            return chalk.dim("????");
+    }
+}
+async function checkInfrastructureFiles(projectDir, results) {
+    const manifest = await getManifest();
+    let missing = 0;
+    for (const file of manifest.infrastructure) {
+        if (!(await fileExists(join(projectDir, file)))) {
+            missing++;
+            results.push({
+                severity: "critical",
+                name: "infrastructure_missing",
+                passed: false,
+                message: `Missing infrastructure file: ${file}`,
+            });
+        }
+    }
+    if (missing === 0) {
+        results.push({
+            severity: "critical",
+            name: "infrastructure_complete",
+            passed: true,
+            message: `All ${manifest.infrastructure.length} infrastructure files present`,
+        });
+    }
+}
+async function checkVersionConsistency(projectDir, results) {
+    const vv = await readVaultVersion(projectDir);
+    if (!vv) {
+        results.push({
+            severity: "critical",
+            name: "version_file",
+            passed: false,
+            message: ".vault-version file missing",
+        });
+        return;
+    }
+    // Check a few files for hash consistency
+    let mismatches = 0;
+    const filesToCheck = Object.keys(vv.files).slice(0, 5);
+    for (const file of filesToCheck) {
+        const diskPath = join(projectDir, file);
+        if (await fileExists(diskPath)) {
+            const diskHash = await hashFile(diskPath);
+            if (diskHash !== vv.files[file].hash) {
+                mismatches++;
+            }
+        }
+    }
+    // This isn't a failure — mismatches mean local modifications, which are expected
+    results.push({
+        severity: "critical",
+        name: "version_file_readable",
+        passed: true,
+        message: `.vault-version present (v${vv.version}, ${mismatches} file(s) modified)`,
+    });
+}
+async function checkConstitutionReferences(projectDir, results) {
+    const manifest = await getManifest();
+    const agentFiles = manifest.infrastructure.filter((f) => f.startsWith(".claude/agents/"));
+    let missing = 0;
+    for (const file of agentFiles) {
+        try {
+            const content = await readFile(join(projectDir, file), "utf-8");
+            if (!content.includes("VAULT_CONSTITUTION.md")) {
+                missing++;
+                results.push({
+                    severity: "high",
+                    name: "constitution_reference",
+                    passed: false,
+                    message: `${file} does not reference VAULT_CONSTITUTION.md`,
+                });
+            }
+        }
+        catch {
+            // Missing file already reported
+        }
+    }
+    if (missing === 0) {
+        results.push({
+            severity: "high",
+            name: "constitution_references",
+            passed: true,
+            message: "All agent files reference the constitution",
+        });
+    }
+}
+async function checkDeprecatedPatterns(projectDir, results) {
+    const deprecated = [
+        "Meta-research cycles in last 10 sessions",
+        "Reports synthesized since last ideation",
+    ];
+    const manifest = await getManifest();
+    for (const pattern of deprecated) {
+        let found = false;
+        for (const file of manifest.infrastructure) {
+            try {
+                const content = await readFile(join(projectDir, file), "utf-8");
+                if (content.includes(pattern)) {
+                    found = true;
+                    results.push({
+                        severity: "high",
+                        name: "deprecated_pattern",
+                        passed: false,
+                        message: `Deprecated pattern "${pattern}" in ${file}`,
+                    });
+                    break;
+                }
+            }
+            catch {
+                // Skip
+            }
+        }
+        if (!found) {
+            results.push({
+                severity: "high",
+                name: "deprecated_pattern",
+                passed: true,
+                message: `No deprecated "${pattern}"`,
+            });
+        }
+    }
+}
+async function checkOrphanedQueueItems(projectDir, results) {
+    const queuePath = join(projectDir, "research-vault", "research-queue", "QUEUE.md");
+    try {
+        const content = await readFile(queuePath, "utf-8");
+        const pendingTopics = content.match(/\|\s*([^|]+?)\s*\|\s*pending/gi);
+        if (!pendingTopics) {
+            results.push({
+                severity: "medium",
+                name: "orphaned_queue",
+                passed: true,
+                message: "No pending queue items to check",
+            });
+            return;
+        }
+        const briefsDir = join(projectDir, "research-vault", "research-queue", "briefs");
+        let briefs;
+        try {
+            briefs = await readdir(briefsDir);
+        }
+        catch {
+            briefs = [];
+        }
+        const orphaned = pendingTopics.length - briefs.filter((b) => b !== ".gitkeep").length;
+        if (orphaned > 0) {
+            results.push({
+                severity: "medium",
+                name: "orphaned_queue",
+                passed: false,
+                message: `~${orphaned} pending topic(s) may lack pre-briefs`,
+            });
+        }
+        else {
+            results.push({
+                severity: "medium",
+                name: "orphaned_queue",
+                passed: true,
+                message: "All pending topics appear to have pre-briefs",
+            });
+        }
+    }
+    catch {
+        results.push({
+            severity: "medium",
+            name: "orphaned_queue",
+            passed: true,
+            message: "QUEUE.md not found (pre-bootstrap)",
+        });
+    }
+}
+async function checkInboxStaleness(projectDir, results) {
+    const inboxPath = join(projectDir, "research-vault", "inbox");
+    try {
+        const entries = await readdir(inboxPath);
+        const reportDirs = entries.filter((e) => e !== ".gitkeep");
+        if (reportDirs.length === 0) {
+            results.push({
+                severity: "low",
+                name: "inbox_staleness",
+                passed: true,
+                message: "Inbox is empty",
+            });
+            return;
+        }
+        // Check for old entries (>30 days)
+        const now = Date.now();
+        let stale = 0;
+        for (const dir of reportDirs) {
+            const dateMatch = dir.match(/^(\d{4}-\d{2}-\d{2})/);
+            if (dateMatch) {
+                const entryDate = new Date(dateMatch[1]).getTime();
+                if (now - entryDate > 30 * 24 * 60 * 60 * 1000) {
+                    stale++;
+                }
+            }
+        }
+        if (stale > 0) {
+            results.push({
+                severity: "low",
+                name: "inbox_staleness",
+                passed: false,
+                message: `${stale} inbox report(s) older than 30 days (should be distilled or archived)`,
+            });
+        }
+        else {
+            results.push({
+                severity: "low",
+                name: "inbox_staleness",
+                passed: true,
+                message: `${reportDirs.length} inbox report(s), all recent`,
+            });
+        }
+    }
+    catch {
+        results.push({
+            severity: "low",
+            name: "inbox_staleness",
+            passed: true,
+            message: "Inbox directory not accessible",
+        });
+    }
+}
+async function checkDirectoryStructure(projectDir, results) {
+    const manifest = await getManifest();
+    let missing = 0;
+    for (const dir of manifest.directories) {
+        if (!(await fileExists(join(projectDir, dir)))) {
+            missing++;
+        }
+    }
+    if (missing > 0) {
+        results.push({
+            severity: "low",
+            name: "directory_structure",
+            passed: false,
+            message: `${missing} expected directory(ies) missing`,
+        });
+    }
+    else {
+        results.push({
+            severity: "low",
+            name: "directory_structure",
+            passed: true,
+            message: `All ${manifest.directories.length} directories present`,
+        });
+    }
+}
+//# sourceMappingURL=doctor.js.map

package/dist/commands/doctor.js.map

@@ -0,0 +1 @@
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package/dist/commands/init.d.ts

@@ -0,0 +1,8 @@
+interface InitOptions {
+    scope?: string;
+    noBootstrap?: boolean;
+    force?: boolean;
+}
+export declare function initCommand(options: InitOptions): Promise<void>;
+export {};
+//# sourceMappingURL=init.d.ts.map

package/dist/commands/init.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAmBA,UAAU,WAAW;IACnB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAED,wBAAsB,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,CAmBrE"}

package/dist/commands/init.js

@@ -0,0 +1,181 @@
+import { join } from "node:path";
+import { readFile } from "node:fs/promises";
+import chalk from "chalk";
+import ora from "ora";
+import { detectVault } from "../lib/detect.js";
+import { appendLineIfMissing, cacheOriginal, computeTemplateHashes, copyTemplateFile, ensureDirectory, fileExists, } from "../lib/files.js";
+import { hashFile } from "../lib/checksum.js";
+import { getManifest, getTemplatePath } from "../lib/template.js";
+import { writeVaultVersion } from "../lib/version-file.js";
+import { getCliVersion } from "./version.js";
+export async function initCommand(options) {
+    const projectDir = process.cwd();
+    const detection = await detectVault(projectDir);
+    if (detection.status === "managed" && !options.force) {
+        console.log(chalk.yellow(`Vault already installed (v${detection.version}). Use --force to reinitialize.`));
+        return;
+    }
+    if (detection.status === "unmanaged" && !options.force) {
+        await adoptExistingVault(projectDir);
+        return;
+    }
+    await scaffoldVault(projectDir, options);
+}
+async function scaffoldVault(projectDir, options) {
+    const manifest = await getManifest();
+    const spinner = ora("Scaffolding Research Vault...").start();
+    // 1. Create directories
+    for (const dir of manifest.directories) {
+        await ensureDirectory(dir, projectDir);
+    }
+    spinner.text = "Copying infrastructure files...";
+    // 2. Copy infrastructure files
+    for (const file of manifest.infrastructure) {
+        await copyTemplateFile(file, projectDir);
+        await cacheOriginal(file, projectDir);
+    }
+    // 3. Copy content templates (only if they don't already exist)
+    for (const file of manifest.content_templates) {
+        const destPath = join(projectDir, file);
+        if (!(await fileExists(destPath))) {
+            await copyTemplateFile(file, projectDir);
+        }
+    }
+    // 4. Create .vault-version
+    spinner.text = "Creating version file...";
+    const fileRecords = await computeTemplateHashes(manifest);
+    const cliVersion = getCliVersion();
+    const vaultVersion = {
+        version: cliVersion,
+        installedAt: new Date().toISOString(),
+        cliVersion,
+        files: fileRecords,
+    };
+    await writeVaultVersion(projectDir, vaultVersion);
+    // 5. Update .gitignore
+    const gitignorePath = join(projectDir, ".gitignore");
+    await appendLineIfMissing(gitignorePath, ".vault/");
+    await appendLineIfMissing(gitignorePath, ".claude/settings.local.json");
+    spinner.succeed(chalk.green(`Research Vault initialized (v${cliVersion})`));
+    // Summary
+    console.log();
+    console.log(`  ${chalk.dim("Infrastructure:")} ${manifest.infrastructure.length} files`);
+    console.log(`  ${chalk.dim("Directories:")}     ${manifest.directories.length} created`);
+    console.log(`  ${chalk.dim("Version file:")}    .vault-version`);
+    console.log(`  ${chalk.dim("Originals cache:")} .vault/originals/`);
+    console.log();
+    // Bootstrap prompt
+    if (!options.noBootstrap) {
+        await offerBootstrap(projectDir, options.scope);
+    }
+    else {
+        console.log(chalk.dim("Skipped bootstrap. Run /vault-review or paste BOOTSTRAP.md into your agent when ready."));
+    }
+}
+async function adoptExistingVault(projectDir) {
+    console.log(chalk.yellow("Existing vault detected (unmanaged)."));
+    const spinner = ora("Analyzing installed files...").start();
+    const manifest = await getManifest();
+    const templateHashes = await computeTemplateHashes(manifest);
+    let matched = 0;
+    let modified = 0;
+    const modifiedFiles = [];
+    for (const file of manifest.infrastructure) {
+        const diskPath = join(projectDir, file);
+        if (!(await fileExists(diskPath))) {
+            continue;
+        }
+        const diskHash = await hashFile(diskPath);
+        if (templateHashes[file] && diskHash === templateHashes[file].hash) {
+            matched++;
+        }
+        else {
+            modified++;
+            modifiedFiles.push(file);
+        }
+    }
+    spinner.succeed("File analysis complete.");
+    console.log();
+    console.log(`  ${chalk.green(`${matched}`)} files match current template`);
+    if (modified > 0) {
+        console.log(`  ${chalk.yellow(`${modified}`)} files have local modifications:`);
+        for (const f of modifiedFiles) {
+            console.log(`    ${chalk.dim("~")} ${f}`);
+        }
+    }
+    console.log();
+    // Create .vault-version with template hashes as the baseline.
+    // Modified files will be detected during upgrade because their disk
+    // content won't match these template hashes.
+    const cliVersion = getCliVersion();
+    const vaultVersion = {
+        version: "0.0.0",
+        installedAt: new Date().toISOString(),
+        cliVersion,
+        files: templateHashes,
+    };
+    await writeVaultVersion(projectDir, vaultVersion);
+    // Cache originals from the template (not from disk)
+    const cacheSpinner = ora("Caching template originals...").start();
+    for (const file of manifest.infrastructure) {
+        await cacheOriginal(file, projectDir);
+    }
+    cacheSpinner.succeed("Cached template originals.");
+    // Ensure directories exist
+    for (const dir of manifest.directories) {
+        await ensureDirectory(dir, projectDir);
+    }
+    // Update .gitignore
+    const gitignorePath = join(projectDir, ".gitignore");
+    await appendLineIfMissing(gitignorePath, ".vault/");
+    await appendLineIfMissing(gitignorePath, ".claude/settings.local.json");
+    console.log();
+    console.log(chalk.green("Vault adopted as CLI-managed at baseline v0.0.0."));
+    console.log(`Run ${chalk.cyan("rvault upgrade")} to update to the latest template.`);
+}
+async function offerBootstrap(projectDir, scope) {
+    const bootstrapPath = getTemplatePath("BOOTSTRAP.md");
+    let bootstrapContent;
+    try {
+        bootstrapContent = await readFile(bootstrapPath, "utf-8");
+    }
+    catch {
+        console.log(chalk.dim("Bootstrap template not found in package."));
+        return;
+    }
+    // Extract just the prompt part (everything after the --- separator)
+    const parts = bootstrapContent.split("\n---\n");
+    let prompt = parts.length > 1 ? parts.slice(1).join("\n---\n").trim() : bootstrapContent;
+    if (scope) {
+        prompt =
+            `SCOPE CONSTRAINT: Focus this vault on: ${scope}\n\n` + prompt;
+    }
+    // Check if claude CLI is available
+    const claudeAvailable = await isClaudeAvailable();
+    if (claudeAvailable) {
+        console.log(`To generate project-specific goals and queue, run:`);
+        console.log(chalk.cyan(`  rvault run --bootstrap`));
+        console.log(chalk.dim(`  Or paste the bootstrap prompt into Claude Code manually.`));
+    }
+    else {
+        // Save bootstrap prompt for manual use
+        const promptPath = join(projectDir, "research-vault", "BOOTSTRAP-PROMPT.md");
+        const { writeFile: wf } = await import("node:fs/promises");
+        await wf(promptPath, prompt, "utf-8");
+        console.log(`Bootstrap prompt saved to ${chalk.cyan("research-vault/BOOTSTRAP-PROMPT.md")}`);
+        console.log(chalk.dim("Paste it into your coding agent to complete setup."));
+    }
+}
+async function isClaudeAvailable() {
+    try {
+        const { execFile } = await import("node:child_process");
+        const { promisify } = await import("node:util");
+        const execAsync = promisify(execFile);
+        await execAsync("claude", ["--version"], { timeout: 3000 });
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+//# sourceMappingURL=init.js.map

package/dist/commands/init.js.map

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package/dist/commands/run.d.ts

@@ -0,0 +1,9 @@
+interface RunOptions {
+    quickBurn?: boolean;
+    maxTurns?: number;
+    background?: boolean;
+    explainPermissions?: boolean;
+}
+export declare function runCommand(options: RunOptions): Promise<void>;
+export {};
+//# sourceMappingURL=run.d.ts.map

package/dist/commands/run.d.ts.map

@@ -0,0 +1 @@
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