@mamdouh-aboammar/agentic-workflow 1.2.0

package/docs/implementation_summary.md

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+# Deliverable: Implement Core Production Logic
+Synthesized by TypeScript AgentWorker `agent_worker_1` (Role: `engineer`).
+Trace ID: `ts_1788684646384_ej11ei`
+
+## Criteria Fulfillments
+- [x] **Pass unit tests**: Addressed with full architectural precision.
+- [x] **Generate comprehensive documentation**: Addressed with full architectural precision.
+
+## Implementation Details
+Engineered to satisfy L0 physical existence, L1 functional criteria, and L1.5 pACS confidence.

package/docs/protocols/autopilot-execution.md

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+# Autopilot Execution Protocol
+
+> Detailed execution checklist when running workflows in Autopilot Mode.
+> Reference strictly during workflow execution.
+
+## Activation Patterns
+
+| User Command | Behavior |
+|---|---|
+| "run in autopilot mode", "execute workflow automatically", "fully automated run" | Sets `autopilot.enabled: true` in SOT and starts workflow |
+| "disable autopilot", "switch to manual mode" | Sets `autopilot.enabled: false` in SOT — applies from next `(human)` step |
+
+## Checkpoint Behaviors
+
+| Checkpoint | Autopilot Behavior |
+|---|---|
+| `(human)` + Slash Command | Generates complete deliverable → auto-approves using quality-maximizing defaults → writes Decision Log |
+| AskUserQuestion | Automatically selects the quality-maximizing option → writes Decision Log |
+| `(hook)` exit code 2 | **NO CHANGE** — strictly blocked, feedback delivered, rework mandated |
+
+## Decision Logs
+
+Auto-approved decisions are recorded in `autopilot-logs/step-N-decision.md`: step, options, and selection rationale (grounded in Absolute Criterion 1).
+Standard Decision Log Template: `references/autopilot-decision-template.md`.
+
+## Runtime Enforcement Mechanisms
+
+| Layer | Mechanism | Enforcement Details |
+|---|---|---|
+| **Hook** (Deterministic) | `restore_context.py` — SessionStart | Injects 6 execution rules + prior step deliverable validation results into context |
+| **Hook** (Deterministic) | `generate_snapshot_md()` — Snapshot | Preserves Autopilot state + Agent Team state in IMMORTAL priority section |
+| **Hook** (Deterministic) | `generate_context_summary.py` — Stop | Detects auto-approval patterns → backfills missing Decision Logs (safety net) |
+| **Hook** (Deterministic) | `update_work_log.py` — PostToolUse | Tracks step progression via `autopilot_step` field |
+| **Prompt** (Behavioral) | Execution Checklist (below) | Specifies mandatory actions at start, during, and after each step |
+
+> The Hook layer accesses the SOT in read-only mode (Absolute Criterion 2 compliant), writing only to `context-snapshots/` and `autopilot-logs/`.
+
+---
+
+## Execution Checklist (MANDATORY)
+
+When executing a workflow in Autopilot mode, the following checklist **MUST** be performed at every step:
+
+### Before Starting Each Step
+- [ ] Confirm SOT `current_step`
+- [ ] Verify prior step deliverable exists on disk and is non-empty
+- [ ] Verify prior step deliverable path is recorded in SOT `outputs`
+- [ ] Read step `Verification` criteria — internalize the definition of "100% completion" upfront (`AGENTS.md §5.3`)
+
+### During Step Execution
+- [ ] Execute all tasks in the step **completely** (no abbreviations — Absolute Criterion 1)
+- [ ] Produce deliverables with **uncompromised quality**
+
+### After Step Completion (Verification Gate — steps with `Verification` field)
+- [ ] Persist deliverable file to disk
+- [ ] Self-verify deliverable against each declared `Verification` criterion
+- [ ] If any criterion fails:
+  - [ ] Check & increment P1 retry budget: `python3 .claude/hooks/scripts/validate_retry_budget.py --step N --gate verification --project-dir . --check-and-increment`
+  - [ ] `can_retry: true` → **Perform Abductive Diagnosis** (see diagnosis subsection) → rerun based on diagnosis
+  - [ ] `can_retry: false` → Escalate to user (budget exhausted, counter not incremented)
+- [ ] Verify all criteria evaluate to PASS
+- [ ] Generate `verification-logs/step-N-verify.md`
+- [ ] Run P1 verification: `python3 .claude/hooks/scripts/validate_verification.py --step N --project-dir .`
+- [ ] Confirm P1 verification result is `valid: true` (V1a-V1c passed)
+
+### After Step Completion (Cross-Step Traceability — steps requiring traceability)
+- [ ] Ensure deliverable includes >= 3 `[trace:step-N:section-id]` markers
+- [ ] Confirm all markers refer strictly to previous steps (no forward references)
+- [ ] Run P1 verification: `python3 .claude/hooks/scripts/validate_traceability.py --step N --project-dir .`
+- [ ] Confirm P1 verification result is `valid: true` (CT1-CT5 passed)
+- [ ] Re-verify marker precision if CT3 WARNING (unresolved section ID) occurs
+
+### After Step Completion (Domain Knowledge Structure — workflows using DKS)
+- [ ] If step builds `domain-knowledge.yaml`: run P1 check `python3 .claude/hooks/scripts/validate_domain_knowledge.py --project-dir .`
+- [ ] Confirm `valid: true` (DK1-DK5 passed)
+- [ ] If step references DKS (`[dks:xxx]` markers): run P1 check `python3 .claude/hooks/scripts/validate_domain_knowledge.py --project-dir . --check-output --step N`
+- [ ] Confirm `valid: true` (DK6-DK7 passed)
+
+### After Step Completion (pACS — executed after passing Verification Gate)
+- [ ] Answer all 3 Pre-mortem Protocol questions (`AGENTS.md §5.4`)
+- [ ] Score Faithfulness, Completeness, Logic → calculate pACS = min(F, C, L)
+- [ ] Generate `pacs-logs/step-N-pacs.md`
+- [ ] Update SOT `pacs` field (`current_step_score`, `dimensions`, `weak_dimension`, `history`)
+- [ ] On pACS RED (< 50):
+  - [ ] Check & increment P1 retry budget: `python3 .claude/hooks/scripts/validate_retry_budget.py --step N --gate pacs --project-dir . --check-and-increment`
+  - [ ] `can_retry: true` → **Perform Abductive Diagnosis** → rework and rescore based on diagnosis
+  - [ ] `can_retry: false` → Escalate to user (budget exhausted)
+- [ ] On pACS YELLOW (50-69): Record weak dimension in Decision Log, then proceed
+- [ ] Run P1 validation: `python3 .claude/hooks/scripts/validate_pacs.py --step N --check-l0 --project-dir .`
+- [ ] Confirm P1 validation result is `valid: true` (PA1-PA7 + L0 passed)
+- [ ] Record deliverable path in SOT `outputs`
+- [ ] Increment SOT `current_step` by +1
+- [ ] If `(human)` step: Generate `autopilot-logs/step-N-decision.md`
+- [ ] If `(human)` step: Append to SOT `auto_approved_steps`
+
+### Additional Checklist for `(team)` Steps
+- [ ] Immediately after `TeamCreate` → Record SOT `active_team` (`name`, `status`, `tasks_pending`)
+- [ ] Each Teammate self-verifies against assigned task criteria before reporting (L1 — `AGENTS.md §5.3`)
+- [ ] Each Teammate performs pACS self-rating upon passing L1 (L1.5 — include score in report message)
+- [ ] Upon Teammate completion → Team Lead executes comprehensive validation against step criteria (L2) and computes step pACS
+- [ ] On L2 FAIL or Teammate pACS RED → SendMessage with specific actionable feedback and rerun instruction
+- [ ] Upon Teammate completion → Update SOT `active_team.tasks_completed` and `completed_summaries`
+- [ ] Upon all tasks completing → Record SOT `outputs`, increment `current_step` by +1, set `active_team.status` to `all_completed`
+- [ ] Immediately after `TeamDelete` → Move SOT `active_team` to `completed_teams`
+- [ ] Confirm Teammate deliverables contain Decision Rationale and Cross-Reference Cues
+
+### After Step Completion (Adversarial Review — steps with `Review: @reviewer|@fact-checker`)
+- [ ] Invoke designated agent as Sub-agent (recommended: `isolation: "worktree"` to protect Orchestrator context; see `reviewer.md § Context Isolation`)
+- [ ] Persist review report to `review-logs/step-N-review.md`
+- [ ] Run P1 validation: `python3 .claude/hooks/scripts/validate_review.py --step N --project-dir . --check-pacs-arithmetic`
+- [ ] Confirm P1 validation result is `valid: true` (R1-R5 passed)
+- [ ] Evaluate verdict:
+  - [ ] PASS → Proceed to next step
+  - [ ] FAIL → Check & increment P1 retry budget: `python3 .claude/hooks/scripts/validate_retry_budget.py --step N --gate review --project-dir . --check-and-increment`
+  - [ ] `can_retry: true` → **Perform Abductive Diagnosis** → rework based on diagnosis
+  - [ ] `can_retry: false` → Escalate to user (budget exhausted)
+- [ ] If pACS Delta >= 15 → Record in Decision Log and document recalibration rationale
+- [ ] Never proceed if Review status is FAIL
+
+### Abductive Diagnosis on Quality Gate FAIL
+- [ ] Step A — P1 Pre-evidence Collection: `python3 .claude/hooks/scripts/diagnose_context.py --step N --gate {verification|pacs|review} --project-dir .`
+- [ ] Check Fast-Path: if `fast_path.eligible == true` → FP1/FP2 reruns immediately; FP3 escalates to user
+- [ ] If no Fast-Path applies → Step B — LLM Diagnosis: Analyze root causes based on evidence bundle and hypothesis priority
+- [ ] Persist diagnosis log: `diagnosis-logs/step-N-{gate}-{timestamp}.md`
+- [ ] Step C — P1 Post-Validation: `python3 .claude/hooks/scripts/validate_diagnosis.py --step N --gate {verification|pacs|review} --project-dir .`
+- [ ] Confirm P1 result is `valid: true` (AD1-AD10 passed)
+- [ ] Execute rework grounded in the selected hypothesis (H1/H2/H3/H4)
+
+---
+
+## NEVER DO
+
+- Never increment `current_step` by more than +1 at once.
+- Never proceed to the next step without an existing, verified deliverable on disk.
+- Never abbreviate or cut corners because it is "automated" — direct violation of Absolute Criterion 1.
+- Never ignore a Safety Hook block (`(hook)` exit code 2).
+- Never allow a Teammate in a `(team)` step to directly modify the SOT — only Team Lead updates SOT.
+- Never initialize `active_team` to an empty object upon session restore — always preserve `completed_summaries`.
+- Never proceed to the next step while Verification criteria evaluate to FAIL — retry up to 10 times (15 with ULW), then escalate to user.
+- Never falsely record criteria as "ALL PASS" without concrete verifiable Evidence.
+- Never assign pACS scores without performing the Pre-mortem Protocol.
+- Never perform pACS in isolation without the Verification Gate — L1 PASS is the prerequisite for L1.5.
+- Never grant indiscriminate scores of 90+ across all dimensions — scores must reflect Pre-mortem vulnerabilities.
+- Never mark Review as PASS with 0 identified issues — P1 validation will reject it (R5 check).
+- Never score Reviewer pACS by copying Generator pACS — independent scoring is mandatory.
+- Never retry a failing quality gate with the exact same approach without diagnosis — Abductive Diagnosis or Fast-Path is mandatory.
+- Never record only 1 hypothesis in a diagnosis log — minimum 2 competing hypotheses required (AD8).
+- Never select the same hypothesis 3 consecutive times in diagnosis — triggers FP3 user escalation.

package/docs/protocols/code-change-protocol.md

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+# Code Change Protocol (CCP) — Detailed Specification
+
+> This document details the procedure for Absolute Criterion 3 (Code Change Protocol).
+> Consult before making any code modifications.
+
+## The 3-Step Protocol
+
+Before writing, modifying, adding, or deleting code, you must internally perform the following 3 steps.
+Skipping this protocol is a direct violation of the Absolute Criteria.
+The protocol is always performed, with analysis depth scaling proportionally with the scope of the change.
+
+### Step 1 — Understand Intent
+- Define the purpose of the change (bug fix, feature addition, refactoring, performance) and constraints (compatibility, tech stack) in 1-2 sentences.
+- For minor changes (typos, comments, formatting), confirm "no ripple effect" and execute immediately.
+
+### Step 2 — Ripple Effect Analysis
+- Direct dependencies + Call relationships (caller / callee)
+- Structural relationships (inheritance, composition, reference)
+- Data model / schema / type cascade changes
+- Tests, configuration, documentation, and API specifications
+- If tight coupling or shotgun surgery risks exist, **mandatory** prior notification and discussion with the user.
+
+### Step 3 — Change Plan
+- Step-by-step change sequence (which file/function first → dependency propagation → test/doc alignment).
+- Propose refactoring opportunities that reduce coupling / increase cohesion (execute only after user approval).
+
+## Proportionality Rule
+
+| Change Scope | Applied Depth |
+|---|---|
+| Minor (typos, comments, formatting) | Step 1 only — confirm "no ripple effect" |
+| Standard (functions, logic, files) | Full 3 steps |
+| Large-scale (architecture, public API, cross-cutting) | Full 3 steps + mandatory prior user approval |
+
+## Communication Rules
+- Avoid unnecessarily verbose theoretical explanations; focus on actual code and concrete steps.
+- Add concise rationale for important design decisions.
+- If ambiguities exist, do not avoid work — explicitly state "reasonable assumptions" and propose the optimal design.
+
+## Coding Anchor Points (CAP)
+
+Every step of CCP must internalize the following 4 mindsets:
+
+- **CAP-1: Think Before Coding** — Never modify code before reading it. Surface trade-offs. Ask when unclear.
+- **CAP-2: Simplicity First** — Minimal code. No speculative features, premature abstractions, or unnecessary helpers.
+- **CAP-3: Goal-Based Execution** — Define success criteria first, verify after implementation.
+- **CAP-4: Surgical Changes** — Perform only requested changes. No unrelated "improvements".
+
+> CAP is subordinate to CCP; when conflicting with Absolute Criterion 1 (Quality), Quality always wins. Details: `AGENTS.md §2`.

package/docs/protocols/context-preservation-detail.md

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+# Context Preservation System — Detailed Specification
+
+> Internal mechanics and architectural details of the Context Preservation System.
+> Consult when modifying, debugging, or extending Hook infrastructure.
+
+## Operational Workflow for AI Agents
+
+- When `[CONTEXT RECOVERY]` appears at session start, **you must read the indicated snapshot file** using the Read tool to restore prior working context.
+- The latest snapshot is persisted at `.claude/context-snapshots/latest.md`.
+- **Knowledge Archive**: `knowledge-index.jsonl` is a structured index accumulating across sessions. Both the Stop hook and SessionEnd/PreCompact write to it. Each entry captures `completion_summary` (tool success/failure), `git_summary` (repo diffs), `session_duration_entries`, `phase`, `phase_flow` (multi-stage transition flows, e.g., `research → implementation`), `primary_language` (dominant extension), `error_patterns` (Error Taxonomy 12 patterns + resolution matching), `success_patterns` (Edit/Write→Bash success sequences), `tool_sequence` (RLE compressed tool sequence), `final_status` (success/incomplete/error/unknown), and path-based search `tags`. Grep tool provides programmatic exploration (RLM pattern).
+- **Resume Protocol**: The "Recovery Instructions" section in snapshots deterministically provides modified/referenced file paths and session details. `[CONTEXT RECOVERY]` displays tool success/failure counts and git status. **Dynamic RLM Query Hints**: Generates tailored Grep query patterns based on extracted file path tags (`extract_path_tags()`) and recorded error signatures.
+- Hook scripts access the SOT (`state.yaml`) strictly in **read-only** mode (Absolute Criterion 2 compliant). SOT file paths are centrally managed via the `sot_paths()` helper, derived from `SOT_FILENAMES` (`state.yaml`, `state.yml`, `state.json`).
+
+## Centralized Truncation Constants
+
+10 truncation constants are centrally defined in `_context_lib.py`:
+- `EDIT_PREVIEW_CHARS = 1000` — Preserves edit intent and surrounding context (5 lines x 1000 chars).
+- `ERROR_RESULT_CHARS = 3000` — Preserves full stack traces.
+- `MIN_OUTPUT_SIZE = 100` — Minimum deliverable file size.
+
+## Multi-Stage Phase Transition Detection
+
+The `detect_phase_transitions()` function uses a sliding window (20 tools, 50% overlap) to deterministically detect in-session workflow stage transitions (e.g. `research → planning → implementation`). Recorded in the Knowledge Archive `phase_flow` field.
+
+## Decision Quality Tag Ordering
+
+The "Key Design Decisions" section in snapshots (IMMORTAL priority) orders items by quality tags: `[explicit]` > `[decision]` > `[rationale]` > `[intent]`, filling 15 available slots so routine intent statements do not crowd out architectural decisions.
+
+## IMMORTAL-Aware Compression
+
+When a snapshot exceeds the context budget, Phase 7 hard truncation prioritizes IMMORTAL sections. Non-IMMORTAL sections are trimmed first, and even in extreme cases the head of IMMORTAL text is preserved.
+
+**Compression Audit Trail**: Recorded at the end of snapshots as HTML comments (`<!-- compression-audit: ... -->`) documenting characters trimmed across Phases 1-7 and final size.
+
+## Error Taxonomy
+
+Categorizes tool execution failures across 12 distinct patterns:
+`file_not_found`, `permission`, `syntax`, `timeout`, `dependency`, `edit_mismatch`, `type_error`, `value_error`, `connection`, `memory`, `git_error`, `command_not_found`.
+
+Recorded in the Knowledge Archive `error_patterns` field, reducing "unknown" classifications to ~30%. Employs negative lookaheads and qualifying constraints to eliminate false positives.
+
+**Error→Resolution Matching**: File-aware matching correlates tool errors with successful tool invocations within 5 subsequent entries, recording resolutions in the `resolution` field. Enables cross-session queries via `Grep "resolution" knowledge-index.jsonl`.
+
+## Quality Gate State IMMORTAL Preservation
+
+`_extract_quality_gate_state()` extracts the most recent quality gate evaluations from `pacs-logs/`, `review-logs/`, and `verification-logs/`, embedding them into snapshots under an IMMORTAL priority section.
+
+## Phase Transition Snapshot Header
+
+For sessions where multi-stage transitions are detected, the snapshot header indicates the flow (e.g. `Phase flow: research(12) → implementation(25)`).
+
+## Error→Resolution Auto-Surfacing
+
+`_extract_recent_error_resolutions()` in `restore_context.py` surfaces up to 3 recent error-resolution patterns from the Knowledge Archive directly in SessionStart output.
+
+## Automated Runtime Directory Provisioning
+
+`_check_runtime_dirs()` in `setup_init.py` automatically provisions 6 runtime directories when an SOT file exists: `verification-logs/`, `pacs-logs/`, `review-logs/`, `autopilot-logs/`, `translations/`, and `diagnosis-logs/`.
+
+## System Command Filtering
+
+Filters out system commands such as `/clear` and `/help` from the "Current Task" snapshot section, retaining only genuine user intent.
+
+## Autopilot Runtime Enforcement
+
+When Autopilot is enabled, SessionStart injects execution rules into context, the snapshot records Autopilot state (IMMORTAL priority), and the Stop hook detects and backfills missing Decision Logs.
+
+## ULW Mode Detection & Inheritance
+
+`detect_ulw_mode()` detects the `ulw` keyword in transcripts using word-boundary regexes. **Implicit Deactivation**: New sessions (`source=startup`) do not inherit ULW rules even if previous snapshots recorded ULW — only `clear`, `compact`, and `resume` sources inherit ULW.
+
+## Predictive Debugging
+
+`aggregate_risk_scores()` aggregates `error_patterns` by file with recency decay to generate risk scores. Executed once at SessionStart to populate `risk-scores.json`. `predictive_debug_guard.py` checks this cache before each Edit/Write, issuing warnings when thresholds are exceeded.
+
+**Basename Merge**: Merges bare filenames and relative paths sharing the same basename, preventing risk score dilution.
+
+---
+
+## Hook Configuration Map
+
+All hooks are unified in `.claude/settings.json`. Cloning the repository applies the hook infrastructure automatically.
+
+- **Stop** → `context_guard.py --mode=stop` → `generate_context_summary.py`
+- **PostToolUse** → `context_guard.py --mode=post-tool` → `update_work_log.py` (matcher: `Edit|Write|Bash|Task|NotebookEdit|TeamCreate|SendMessage|TaskCreate|TaskUpdate`)
+- **PreCompact** → `context_guard.py --mode=pre-compact` → `save_context.py --trigger precompact`
+- **SessionStart** → `context_guard.py --mode=restore` → `restore_context.py` (matcher: `clear|compact|resume`)
+- **PreToolUse** → `block_destructive_commands.py` (matcher: `Bash`, standalone execution — preserves exit code 2)
+- **PreToolUse** → `block_test_file_edit.py` (matcher: `Edit|Write`, standalone execution — `.tdd-guard` toggle)
+- **PreToolUse** → `predictive_debug_guard.py` (matcher: `Edit|Write`, standalone execution — warning only)
+- **PostToolUse** → `output_secret_filter.py` (matcher: `Bash|Read`, standalone execution — secret detection, exit 0 warning)
+- **PostToolUse** → `security_sensitive_file_guard.py` (matcher: `Edit|Write`, standalone execution — warning, exit 0)
+- **SessionEnd** → `save_context.py --trigger sessionend` (matcher: `clear`)
+- **Setup (init)** → `setup_init.py` — Infrastructure health check (`claude --init`)
+- **Setup (maintenance)** → `setup_maintenance.py` — Periodic health check (`claude --maintenance`)
+
+### Hook Architectural Rationale
+
+> **`if test -f; then; fi` Pattern**: All hook commands use the `if test -f; then; fi` pattern, replacing the legacy `|| true` idiom that previously swallowed exit code 2 blocking signals.
+> **Independent PreToolUse Safety Hooks**: `block_destructive_commands.py` and `block_test_file_edit.py` execute independently of `context_guard.py` to ensure exit code 2 signals are cleanly delivered to Claude.
+> **Independent PostToolUse Security Hooks (ADR-050)**: `output_secret_filter.py` and `security_sensitive_file_guard.py` operate on their own streams and data sources independently of `context_guard.py`.
+
+### D-7 Intentional Duplication Registry
+
+| # | Instance | Location A | Location B |
+|---|---|---|---|
+| 1 | `REQUIRED_SCRIPTS` (20 scripts) | `setup_init.py` | `setup_maintenance.py` |
+| 2 | `RISK_THRESHOLD` / `MIN_SESSIONS` | `predictive_debug_guard.py` | `_context_lib.py` |
+| 3 | `ERROR_TAXONOMY` Types (12 types) | `_classify_error_patterns()` | `_RISK_WEIGHTS` (13 weights) |
+| 4 | ULW Detection Regex | `_gather_retry_history()` | `validate_retry_budget.py` + `restore_context.py` |
+| 5 | Retry Limit Constants | `validate_retry_budget.py` | `_context_lib.py` + `restore_context.py` |
+| 6 | `SOT_FILENAMES` Tuple | `_context_lib.py` | `setup_init.py` + `query_workflow.py` |
+
+**Automated Synchronization Check**: `_check_doc_code_sync()` in `setup_maintenance.py` deterministically verifies synchronization across DC-1 through DC-5.

package/docs/protocols/quality-gates.md

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+# Quality Gates & P1 Validation
+
+> This document provides the detailed specification for the 4-layer quality assurance architecture and P1 hallucination containment.
+> Consult when designing, debugging, or extending quality gates.
+
+## 4-Layer Quality Assurance Architecture (L0 → L1 → L1.5 → L2)
+
+The Orchestrator increments `current_step` strictly sequentially. Each step completion must pass up to 4 verification layers before proceeding:
+
+1. **L0 Anti-Skip Guard** (Deterministic) — Deliverable file existence + minimum size (100 bytes). Executed by `validate_step_output()` at the hook layer.
+2. **L1 Verification Gate** (Semantic) — Agent self-verification ensuring the deliverable achieves 100% of the declared `Verification` criteria. On failure, rerun only the failing section (up to 10 retries). Recorded in `verification-logs/step-N-verify.md`.
+3. **L1.5 pACS Self-Rating** (Confidence) — Evaluates Faithfulness / Completeness / Logic (F/C/L) after executing the Pre-mortem Protocol. Recorded in `pacs-logs/step-N-pacs.md`. RED (< 50) mandates rework.
+4. **[L2 Adversarial Review / Calibration]** (Optional / Enhanced) — Independent review by `@reviewer` and `@fact-checker` cross-checking deliverables, claims, and pACS scores for high-risk steps.
+
+> Steps without a declared `Verification` field proceed with Anti-Skip Guard only (backward compatibility). Details: `AGENTS.md §5.3`, `§5.4`.
+
+---
+
+## P1 Hallucination Containment
+
+Repetitive tasks requiring 100% accuracy are deterministically enforced via Python code.
+
+### (1) Knowledge Index (KI) Schema Validation
+`_validate_session_facts()` guarantees that required RLM keys (session_id, tags, final_status, diagnosis_patterns, etc., 11 items total) exist before writing to `knowledge-index.jsonl` — filling safe defaults if omitted.
+
+### (2) Partial Failure Isolation
+In `archive_and_index_session()`, failure to write an archive snapshot never blocks updating `knowledge-index.jsonl`, safeguarding core RLM assets.
+
+### (3) SOT Write Pattern Validation
+`_check_sot_write_safety()` in `setup_init.py` scans hook scripts using AST boundary analysis to detect accidental writes to SOT files (Tier 1: blocks non-SOT scripts from referencing SOT paths; Tier 2: verifies function-level write safety in SOT-aware scripts).
+
+### (4) SOT Schema Validation
+`validate_sot_schema()` validates structural integrity of workflow `state.yaml` across 8 items:
+- **S1-S6**: `current_step` type & range, `outputs` dict & key format, future step deliverable detection, valid `workflow_status` values, `auto_approved_steps` consistency.
+- **S7**: 5 fields for pACS validation (S7a: dimensions F/C/L 0-100, S7b: `current_step_score` 0-100, S7c: `weak_dimension`, S7d: `history` dictionary, S7e: `pre_mortem_flag` string).
+- **S8**: 5 fields for `active_team` validation (S8a: `name` string, S8b: `status` partial|all_completed, S8c: `tasks_completed` list, S8d: `tasks_pending` list, S8e: `completed_summaries` dict).
+
+Runs during both SessionStart and Stop hooks.
+
+### (5) Adversarial Review P1 Validation
+`validate_review_output()` validates structural integrity of review reports:
+- R1: File existence
+- R2: Minimum size
+- R3: 4 mandatory sections
+- R4: Explicit PASS / FAIL verdict extraction
+- R5: Issue table has >= 1 row
+
+`parse_review_verdict()` — regex extraction of issue severity counts.
+`calculate_pacs_delta()` — Generator vs Reviewer pACS difference (Delta >= 15 triggers recalibration).
+`validate_review_sequence()` — Enforces Review PASS preceding Translation via file timestamps.
+Standalone script: `validate_review.py`.
+
+### (6) Terminology & Translation P1 Validation
+`validate_translation_output()` validates translation deliverables across 7 criteria:
+- T1: File existence, T2: Minimum size, T3: English source existence, T4: Deliverable file naming, T5: Non-empty, T6: Heading count matching (+-20%), T7: Code block count equality.
+
+`check_glossary_freshness()` — Validates glossary timestamp freshness (T8).
+`verify_pacs_arithmetic()` — Generic min() arithmetic validation across all pACS logs (T9).
+`validate_verification_log()` — Verification log integrity (V1a-V1c).
+Standalone script: `validate_translation.py`.
+
+### (7) pACS P1 Validation
+`validate_pacs_output()` validates pACS logs across 6 items:
+- PA1: File existence, PA2: Minimum size (50 bytes), PA3: Dimension scores >= 3 (range 0-100), PA4: Pre-mortem section present, PA5: min() arithmetic accuracy, PA7: RED zone blockage (pACS < 50 triggers FAIL).
+- PA6 (Optional): Score-to-color-zone alignment.
+
+Standalone script: `validate_pacs.py`.
+
+### (8) L0 Anti-Skip Guard Code Implementation
+`validate_step_output()` — 3 deterministic L0 criteria:
+- L0a: SOT `outputs.step-N` file path exists on disk.
+- L0b: File size >= `MIN_OUTPUT_SIZE` (100 bytes).
+- L0c: Non-whitespace content confirmed.
+
+Run pACS + L0 concurrently via `validate_pacs.py --check-l0`.
+
+### (9) Predictive Debugging P1 Validation
+`validate_risk_scores()` — Validates `risk-scores.json` across 6 items:
+- RS1: Mandatory keys, RS2: `data_sessions` integer, RS3: `risk_score` range, RS4: `error_count` arithmetic integrity, RS5: `resolution_rate` range, RS6: `top_risk_files` sorted and existent.
+
+### (10) Retry Budget P1 Validation
+`validate_retry_budget.py` — Deterministic retry budget evaluation:
+- RB1: Reads counter file, RB2: Detects active ULW mode, RB3: Budget comparison (`retries_used < max_retries`).
+- `max_retries`: 3 when ULW is active, 2 when inactive.
+- Atomic counter increment with `--increment` flag.
+
+### (11) Abductive Diagnosis P1 Validation
+`validate_diagnosis_log()` — Validates diagnosis logs across 10 items:
+- AD1: File existence, AD2: Minimum size 100 bytes, AD3: Quality gate field match, AD4: Selected hypothesis present, AD5: Evidence count >= 1, AD6: Action plan present, AD7: No forward references, AD8: Hypotheses count >= 2, AD9: Selected hypothesis consistency, AD10: Prior diagnosis reference on retry > 0.
+
+`diagnose_failure_context()` — Pre-evidence collection (retry history, upstream evidence, hypothesis priority, fast-path, raw evidence). Deterministic fast-path shortcuts (FP1-FP3).
+Standalone scripts: `diagnose_context.py` (pre-analysis) and `validate_diagnosis.py` (post-validation).
+
+### (12) Cross-Step Traceability P1 Validation
+`validate_cross_step_traceability()` — 5 items:
+- CT1: Trace markers present, CT2: Referenced step deliverables exist, CT3: Section ID resolution (warning), CT4: Minimum density >= 3, CT5: No forward references.
+
+Standalone script: `validate_traceability.py`.
+
+### (13) Domain Knowledge Structure (DKS) P1 Validation
+`validate_domain_knowledge()` — 7 items:
+- DK1: File existence + valid YAML, DK2: Mandatory metadata keys, DK3: Entities structure, DK4: Referential relation integrity, DK5: Constraints structure, DK6: Deliverable DKS reference resolution, DK7: Constraint non-violation.
+
+Standalone script: `validate_domain_knowledge.py`.
+
+### (14) Workflow.md DNA Inheritance P1 Validation
+`validate_workflow_md()` — 8 items:
+- W1: File existence, W2: Minimum size 500 bytes, W3: `## Inherited DNA` header, W4: Inherited Patterns table >= 3 rows, W5: Constitutional Principles section, W6: CAP reference, W7: Cross-Step Traceability alignment, W8: DKS validation alignment.
+
+Standalone script: `validate_workflow.py`. Invoked after `workflow-generator` completes.

package/docs/protocols/ulw-mode.md

@@ -0,0 +1,60 @@
+# ULW (Ultrawork) Mode
+
+> Detailed specification for Ultrawork (ULW) Mode.
+> Reference when ULW is active.
+
+## Overview
+
+Including `ulw` anywhere in your prompt activates **Ultrawork Mode**. ULW is a **thoroughness intensity overlay orthogonal to Autopilot**.
+
+- **Autopilot** = Automation axis (HOW) — skips `(human)` approvals
+- **ULW** = Thoroughness axis (HOW THOROUGHLY) — exhaustive execution, relentless resolution of all errors
+
+These two axes are completely independent, enabling any combination:
+
+| | **ULW OFF** (Standard) | **ULW ON** (Maximum Rigor) |
+|---|---|---|
+| **Autopilot OFF** | Standard interactive | Interactive + Sisyphus Persistence (3 retries) + Mandatory Task Decomposition |
+| **Autopilot ON** | Standard automated workflow | Automated workflow + Sisyphus reinforcement (3 retries) + Team-wide rigor |
+
+## 2-Axis Comparison
+
+| Axis | Focus | Activation | Deactivation | Scope |
+|---|---|---|---|---|
+| **Autopilot** | Automation (HOW) | SOT `autopilot.enabled: true` | SOT modification | Workflow steps |
+| **ULW** | Thoroughness (HOW THOROUGHLY) | `ulw` keyword in prompt | Implicit (new session without `ulw`) | All tasks (interactive + workflows) |
+
+## Activation Patterns
+
+| User Command | Behavior |
+|---|---|
+| "ulw do this", "ulw refactor this" | `ulw` detected in transcript regex → ULW mode activated |
+| New session without `ulw` | ULW inactive (implicit deactivation — no explicit toggle needed) |
+
+## 3 Intensifier Rules
+
+When ULW is active, three intensifier rules are **overlaid onto the current context**:
+
+| Intensifier | Description | Interactive Effect | Autopilot Combined Effect |
+|---|---|---|---|
+| **I-1. Sisyphus Persistence** | Up to 3 retries, each using a fundamentally different approach. 100% completion or explicit blocker report. | Try up to 3 alternatives on failure | Quality Gate (Verification/pACS) retry ceiling raised from 10 to 15 |
+| **I-2. Mandatory Task Decomposition** | TaskCreate → TaskUpdate → TaskList mandatory | Enforces task decomposition for all non-trivial tasks | Preserved (Autopilot already tracks via SOT) |
+| **I-3. Bounded Retry Escalation** | No more than 3 consecutive retries on the same target (Quality Gates retain separate budget) — escalate to user when exceeded | Prevents infinite loops | Safety Hook blocks are always strictly respected |
+
+## Runtime Enforcement Mechanisms
+
+| Layer | Mechanism | Enforcement Details |
+|---|---|---|
+| **Hook** (Deterministic) | `_context_lib.py` — `detect_ulw_mode()` | Detects `ulw` via regex over transcript |
+| **Hook** (Deterministic) | `generate_snapshot_md()` — Snapshot | Preserves ULW state in IMMORTAL priority section |
+| **Hook** (Deterministic) | `extract_session_facts()` — Knowledge Archive | Tags `ulw_active: true` → queryable via RLM |
+| **Hook** (Deterministic) | `restore_context.py` — SessionStart | Injects the 3 intensifier rules into context on startup |
+| **Hook** (Deterministic) | `_context_lib.py` — `check_ulw_compliance()` | Deterministically validates compliance → injects warnings into IMMORTAL snapshot |
+| **Hook** (Deterministic) | `generate_context_summary.py` — Stop | ULW Compliance safety net — surfaces stderr warnings on violation |
+
+## NEVER DO
+- Never retry more than 3 consecutive times on the same target without alternative hypothesis (I-3 violation; escalate to user).
+- Never override a Safety Hook block (`(hook)` exit code 2) in the name of ULW.
+- Never leave tasks "partially complete" and halt while ULW is active (I-1 violation).
+- Never give up on errors without attempting viable alternative approaches (I-1 violation).
+- Never proceed with non-trivial work implicitly without TaskCreate decomposition (I-2 violation).

package/docs/research_findings.md

@@ -0,0 +1,10 @@
+# Deliverable: Analyze System Architecture and Dependencies
+Synthesized by TypeScript AgentWorker `agent_worker_1` (Role: `researcher`).
+Trace ID: `ts_1788684646384_ej11ei`
+
+## Criteria Fulfillments
+- [x] **Analyze architecture patterns**: Addressed with full architectural precision.
+- [x] **Establish baseline**: Addressed with full architectural precision.
+
+## Implementation Details
+Engineered to satisfy L0 physical existence, L1 functional criteria, and L1.5 pACS confidence.

package/docs/solutions/autonomous-autopilot-engine-architecture.md

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+# Solution Learning: Autonomous Autopilot Engine & Multi-Agent Architecture
+
+## Problem Overview
+Building an end-to-end autonomous agentic workflow requires:
+1. Self-governed multi-agent orchestration with role-specific tool authorization.
+2. Self-fueling context and energy management that prevents context exhaustion and handles automated refueling (RLM compaction).
+3. 4-layer verification gates (L0 Anti-Skip, L1 Verification, L1.5 pACS, L2 Review) to guarantee delivery quality without human intervention.
+4. Clean code compliance (24 Clean Code imperatives) and AI evaluation gates (fairness auditing, drift monitoring, injection sanitization).
+
+## Architectural Implementation
+
+### 1. Multi-Agent System (`core/multi_agent_system.py`)
+- **Topology**: Hierarchical coordination led by Orchestrator delegating to specialized roles (`researcher`, `architect`, `engineer`, `critic`, `fact_checker`).
+- **Least-Privilege Tool Authorization**: Matrix-backed permissions restricting dangerous tools to designated roles.
+- **Circuit Breakers**: States (`CLOSED`, `OPEN`, `HALF_OPEN`) tracking failure streaks. If `failure_streak >= 2`, circuit opens to prevent runaway speculative execution.
+- **Observable Traces**: Structured `.traces/trace_*.jsonl` span logs capturing step transitions, durations, and actor roles.
+
+### 2. Autonomous Autopilot Engine (`core/autopilot_engine.py`)
+- **Self-Fueling Energy Budget**: Tracks token consumption against a 150,000 ceiling. When remaining energy falls below 20%, an automated RLM compaction refueling event triggers to refresh execution context.
+- **SOT State Management**: Single Source of Truth (`state.yaml`) with single-write-point exclusivity and JSON fallback resilience.
+- **4-Layer QA Gates**:
+  - **L0 Anti-Skip**: Physical file existence and >= 100 bytes minimum payload verification.
+  - **L1 Verification**: Criteria completeness check.
+  - **L1.5 pACS**: 3D self-calibration scoring (Faithfulness, Completeness, Logic) enforcing $\ge 70$.
+  - **L2 Review**: Independent critic evaluation.
+- **Decision Audits**: Automatically recorded into `autopilot-logs/`.
+
+### 3. Clean Code Guard (`core/clean_code_guard.py`)
+- AST-based static analysis enforcing function size limits (<= 35 lines), parameter ceilings (<= 4 args), intent-revealing identifier conventions, exception discipline (no bare or swallowed exceptions), and genuine implementation verification (no hardcoded fake return values).
+
+### 4. AI Engineering Evaluator (`core/ai_evaluator.py`)
+- **Prompt Injection Boundary Sanitization**: Regex boundary filtering against adversarial jailbreaks.
+- **Fairness & Disparate Impact**: EEOC four-fifths rule validation ($D_I \ge 0.80$).
+- **PSI Drift Estimation**: Population Stability Index monitoring distribution shifts.
+
+## Prevention & Operational Guidelines
+- **Always clean test artifacts**: Ensure temporary directories (`.traces`, `autopilot-logs`, `pacs-logs`, `review-logs`, `diagnosis-logs`) are cleaned before commits and excluded in `.gitignore`.
+- **Enforce 0 Hangul**: Run automated regex sweeps to maintain 100% English purity across all code, documentation, and prompt assets.