@macrostrat/map-interface 1.5.2 → 1.5.4

package/dist/node/map-interface.fdd35e74.js.map

@@ -0,0 +1 @@
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$415bccba1a7f9434$export$9355c61f37d969f4(data) {\n    let occurrenceTree = {\n        phyla: []\n    };\n    let rankMap = {\n        25: \"unranked\",\n        23: \"kingdom\",\n        22: \"subkingdom\",\n        21: \"superphylum\",\n        20: \"phylum\",\n        19: \"subphylum\",\n        18: \"superclass\",\n        17: \"class\",\n        16: \"subclass\",\n        15: \"infraclass\",\n        14: \"superorder\",\n        13: \"order\",\n        12: \"suborder\",\n        11: \"infraorder\",\n        10: \"superfamily\",\n        9: \"family\",\n        8: \"subfamily\",\n        7: \"tribe\",\n        6: \"subtribe\",\n        5: \"genus\",\n        4: \"subgenus\",\n        3: \"species\",\n        2: \"subspecies\"\n    };\n    function getIndex(data, term, property) {\n        for(let i = 0, len = data.length; i < len; i++){\n            if (data[i][property] === term) return i;\n        }\n        return -1;\n    }\n    data.forEach((d)=>{\n        // Some preprocessing\n        d.rank = d.rnk ? rankMap[d.rnk] : d.idr ? rankMap[d.idr] : \"Unknown\";\n        d.italics = d.rnk < 6 ? \"italics\" : \"\";\n        if (typeof d.tna === \"undefined\") d.tna = d.idn;\n        d.old_name = d.tna.split(\" \")[0] != d.idg ? d.tna : \"\";\n        d.url = d.rank === \"species\" ? d.idg + \" \" + d.ids : d.tid ? d.tid.split(\":\")[1] > 0 ? d.idg : \"\" : \"\";\n        // If it has a genus name...\n        if (d.idg) {\n            let genusRes = d.rsg ? d.rsg + \" \" : \"\";\n            let speciesRes = d.rss ? \" \" + d.rss + \" \" : \" \";\n            d.genusRes = genusRes;\n            // If it's a species...\n            if (d.rank === \"species\") {\n                d.display_name1 = d.tna;\n                d.display_name2 = d.tna != d.idg + \" \" + d.ids ? \"(\" + d.tna + \")\" : \"\";\n                d.display_name3 = \"\";\n            } else {\n                d.display_name1 = d.idg;\n                d.display_name2 = speciesRes;\n                d.display_name3 = d.ids;\n            }\n        } else {\n            d.display_name1 = d.tna;\n            d.display_name2 = \"\";\n        }\n        // Find unique phyla\n        let phyla = [];\n        for(let i = 0; i < occurrenceTree.phyla.length; i++)phyla.push(occurrenceTree.phyla[i].phylum);\n        if (phyla.indexOf(d.phl) < 0) {\n            let newPhylum = {\n                phylum: d.phl,\n                classes: []\n            };\n            occurrenceTree.phyla.push(newPhylum);\n        }\n        // Find unique phylum/class combinations\n        let phyla_classes = [];\n        for(let i = 0; i < occurrenceTree.phyla.length; i++)for(let j = 0; j < occurrenceTree.phyla[i].classes.length; j++)phyla_classes.push(occurrenceTree.phyla[i].phylum + \"-\" + occurrenceTree.phyla[i].classes[j].nameClass);\n        if (phyla_classes.indexOf(d.phl + \"-\" + d.cll) < 0) {\n            let newClass = {\n                nameClass: d.cll,\n                families: []\n            };\n            let phylumIndex = getIndex(occurrenceTree.phyla, d.phl, \"phylum\");\n            occurrenceTree.phyla[phylumIndex][\"classes\"].push(newClass);\n        }\n        // Find unique phylum/class/family combinations\n        let phyla_class_family = [];\n        for(let i = 0; i < occurrenceTree.phyla.length; i++){\n            for(let j = 0; j < occurrenceTree.phyla[i].classes.length; j++)for(let k = 0; k < occurrenceTree.phyla[i].classes[j].families.length; k++)phyla_class_family.push(occurrenceTree.phyla[i].phylum + \"-\" + occurrenceTree.phyla[i].classes[j].nameClass + \"-\" + occurrenceTree.phyla[i].classes[j].families[k].family);\n        }\n        if (phyla_class_family.indexOf(d.phl + \"-\" + d.cll + \"-\" + d.fml) < 0) {\n            let newFamily = {\n                family: d.fml,\n                genera: []\n            };\n            let phylumIndex = getIndex(occurrenceTree.phyla, d.phl, \"phylum\");\n            let classIndex = getIndex(occurrenceTree.phyla[phylumIndex].classes, d.cll, \"nameClass\");\n            occurrenceTree.phyla[phylumIndex].classes[classIndex][\"families\"].push(newFamily);\n        }\n        // Place genera into the right phylum/class/family\n        let phylumIndex = getIndex(occurrenceTree.phyla, d.phl, \"phylum\");\n        let classIndex = getIndex(occurrenceTree.phyla[phylumIndex].classes, d.cll, \"nameClass\");\n        let familyIndex = getIndex(occurrenceTree.phyla[phylumIndex].classes[classIndex].families, d.fml, \"family\");\n        occurrenceTree.phyla[phylumIndex].classes[classIndex].families[familyIndex].genera.push(d);\n    });\n    for(let i = 0; i < occurrenceTree.phyla.length; i++){\n        let undefinedClassIndex;\n        for(let j = 0; j < occurrenceTree.phyla[i].classes.length; j++){\n            let undefinedFamilyIndex;\n            for(let k = 0; k < occurrenceTree.phyla[i].classes[j].families.length; k++)if (typeof occurrenceTree.phyla[i].classes[j].families[k].family === \"undefined\") {\n                undefinedFamilyIndex = k;\n                occurrenceTree.phyla[i].classes[j].families[k].family = (typeof occurrenceTree.phyla[i].classes[j].nameClass, \"Miscellaneous unranked taxa\");\n                occurrenceTree.phyla[i].classes[j].families[k].noFamily = true;\n            }\n            if (typeof undefinedFamilyIndex != \"undefined\") occurrenceTree.phyla[i].classes[j].families.push(occurrenceTree.phyla[i].classes[j].families.splice(undefinedFamilyIndex, 1)[0]);\n            if (typeof occurrenceTree.phyla[i].classes[j].nameClass === \"undefined\") {\n                undefinedFamilyIndex = j;\n                occurrenceTree.phyla[i].classes[j].nameClass = (typeof occurrenceTree.phyla[i].phylum, \"Miscellaneous unranked taxa\");\n                occurrenceTree.phyla[i].classes[j].noClass = true;\n            }\n        }\n        if (typeof undefinedClassIndex != \"undefined\") occurrenceTree.phyla[i].classes.push(occurrenceTree.phyla[i].classes.splice(undefinedClassIndex, 1)[0]);\n        if (typeof occurrenceTree.phyla[i].phylum === \"undefined\") {\n            occurrenceTree.phyla[i].phylum = \"Unranked taxa\";\n            occurrenceTree.phyla[i].unranked = true;\n        }\n    }\n    return occurrenceTree;\n}\n\n\n//# sourceMappingURL=map-interface.fdd35e74.js.map\n","export function makeOccurrenceTree(data) {\n  let occurrenceTree = { phyla: [] };\n  let rankMap = {\n    25: \"unranked\",\n    23: \"kingdom\",\n    22: \"subkingdom\",\n    21: \"superphylum\",\n    20: \"phylum\",\n    19: \"subphylum\",\n    18: \"superclass\",\n    17: \"class\",\n    16: \"subclass\",\n    15: \"infraclass\",\n    14: \"superorder\",\n    13: \"order\",\n    12: \"suborder\",\n    11: \"infraorder\",\n    10: \"superfamily\",\n    9: \"family\",\n    8: \"subfamily\",\n    7: \"tribe\",\n    6: \"subtribe\",\n    5: \"genus\",\n    4: \"subgenus\",\n    3: \"species\",\n    2: \"subspecies\",\n  };\n\n  function getIndex(data, term, property) {\n    for (let i = 0, len = data.length; i < len; i++) {\n      if (data[i][property] === term) return i;\n    }\n    return -1;\n  }\n\n  data.forEach((d) => {\n    // Some preprocessing\n    d.rank = d.rnk ? rankMap[d.rnk] : d.idr ? rankMap[d.idr] : \"Unknown\";\n    d.italics = d.rnk < 6 ? \"italics\" : \"\";\n    if (typeof d.tna === \"undefined\") {\n      d.tna = d.idn;\n    }\n    d.old_name = d.tna.split(\" \")[0] != d.idg ? d.tna : \"\";\n    d.url =\n      d.rank === \"species\"\n        ? d.idg + \" \" + d.ids\n        : d.tid\n          ? d.tid.split(\":\")[1] > 0\n            ? d.idg\n            : \"\"\n          : \"\";\n\n    // If it has a genus name...\n    if (d.idg) {\n      let genusRes = d.rsg ? d.rsg + \" \" : \"\";\n      let speciesRes = d.rss ? \" \" + d.rss + \" \" : \" \";\n      d.genusRes = genusRes;\n      // If it's a species...\n      if (d.rank === \"species\") {\n        d.display_name1 = d.tna;\n        d.display_name2 = d.tna != d.idg + \" \" + d.ids ? \"(\" + d.tna + \")\" : \"\";\n        d.display_name3 = \"\";\n      } else {\n        d.display_name1 = d.idg;\n        d.display_name2 = speciesRes;\n        d.display_name3 = d.ids;\n      }\n    } else {\n      d.display_name1 = d.tna;\n      d.display_name2 = \"\";\n    }\n\n    // Find unique phyla\n    let phyla = [];\n    for (let i = 0; i < occurrenceTree.phyla.length; i++) {\n      phyla.push(occurrenceTree.phyla[i].phylum);\n    }\n\n    if (phyla.indexOf(d.phl) < 0) {\n      let newPhylum = { phylum: d.phl, classes: [] };\n      occurrenceTree.phyla.push(newPhylum);\n    }\n\n    // Find unique phylum/class combinations\n    let phyla_classes = [];\n    for (let i = 0; i < occurrenceTree.phyla.length; i++) {\n      for (let j = 0; j < occurrenceTree.phyla[i].classes.length; j++) {\n        phyla_classes.push(\n          occurrenceTree.phyla[i].phylum +\n            \"-\" +\n            occurrenceTree.phyla[i].classes[j].nameClass,\n        );\n      }\n    }\n\n    if (phyla_classes.indexOf(d.phl + \"-\" + d.cll) < 0) {\n      let newClass = { nameClass: d.cll, families: [] };\n      let phylumIndex = getIndex(occurrenceTree.phyla, d.phl, \"phylum\");\n      occurrenceTree.phyla[phylumIndex][\"classes\"].push(newClass);\n    }\n\n    // Find unique phylum/class/family combinations\n    let phyla_class_family = [];\n    for (let i = 0; i < occurrenceTree.phyla.length; i++) {\n      for (let j = 0; j < occurrenceTree.phyla[i].classes.length; j++) {\n        for (\n          let k = 0;\n          k < occurrenceTree.phyla[i].classes[j].families.length;\n          k++\n        ) {\n          phyla_class_family.push(\n            occurrenceTree.phyla[i].phylum +\n              \"-\" +\n              occurrenceTree.phyla[i].classes[j].nameClass +\n              \"-\" +\n              occurrenceTree.phyla[i].classes[j].families[k].family,\n          );\n        }\n      }\n    }\n\n    if (phyla_class_family.indexOf(d.phl + \"-\" + d.cll + \"-\" + d.fml) < 0) {\n      let newFamily = { family: d.fml, genera: [] };\n      let phylumIndex = getIndex(occurrenceTree.phyla, d.phl, \"phylum\");\n      let classIndex = getIndex(\n        occurrenceTree.phyla[phylumIndex].classes,\n        d.cll,\n        \"nameClass\",\n      );\n      occurrenceTree.phyla[phylumIndex].classes[classIndex][\"families\"].push(\n        newFamily,\n      );\n    }\n\n    // Place genera into the right phylum/class/family\n    let phylumIndex = getIndex(occurrenceTree.phyla, d.phl, \"phylum\");\n    let classIndex = getIndex(\n      occurrenceTree.phyla[phylumIndex].classes,\n      d.cll,\n      \"nameClass\",\n    );\n    let familyIndex = getIndex(\n      occurrenceTree.phyla[phylumIndex].classes[classIndex].families,\n      d.fml,\n      \"family\",\n    );\n    occurrenceTree.phyla[phylumIndex].classes[classIndex].families[\n      familyIndex\n    ].genera.push(d);\n  });\n\n  for (let i = 0; i < occurrenceTree.phyla.length; i++) {\n    let undefinedClassIndex;\n    for (let j = 0; j < occurrenceTree.phyla[i].classes.length; j++) {\n      let undefinedFamilyIndex;\n      for (\n        let k = 0;\n        k < occurrenceTree.phyla[i].classes[j].families.length;\n        k++\n      ) {\n        if (\n          typeof occurrenceTree.phyla[i].classes[j].families[k].family ===\n          \"undefined\"\n        ) {\n          undefinedFamilyIndex = k;\n          occurrenceTree.phyla[i].classes[j].families[k].family =\n            \"Miscellaneous \" +\n            (typeof occurrenceTree.phyla[i].classes[j].nameClass ===\n              \"undefined\")\n              ? \"Miscellaneous unranked taxa\"\n              : occurrenceTree.phyla[i].classes[j].nameClass;\n          occurrenceTree.phyla[i].classes[j].families[k].noFamily = true;\n        }\n      }\n\n      if (typeof undefinedFamilyIndex != \"undefined\") {\n        occurrenceTree.phyla[i].classes[j].families.push(\n          occurrenceTree.phyla[i].classes[j].families.splice(\n            undefinedFamilyIndex,\n            1,\n          )[0],\n        );\n      }\n\n      if (typeof occurrenceTree.phyla[i].classes[j].nameClass === \"undefined\") {\n        undefinedFamilyIndex = j;\n        occurrenceTree.phyla[i].classes[j].nameClass =\n          \"Miscellaneous \" +\n          (typeof occurrenceTree.phyla[i].phylum === \"undefined\")\n            ? \"Miscellaneous unranked taxa\"\n            : occurrenceTree.phyla[i].phylum;\n        occurrenceTree.phyla[i].classes[j].noClass = true;\n      }\n    }\n\n    if (typeof undefinedClassIndex != \"undefined\") {\n      occurrenceTree.phyla[i].classes.push(\n        occurrenceTree.phyla[i].classes.splice(undefinedClassIndex, 1)[0],\n      );\n    }\n\n    if (typeof occurrenceTree.phyla[i].phylum === \"undefined\") {\n      occurrenceTree.phyla[i].phylum = \"Unranked taxa\";\n      occurrenceTree.phyla[i].unranked = true;\n    }\n  }\n\n  return occurrenceTree;\n}\n"],"names":["$415bccba1a7f9434$export$9355c61f37d969f4","data","occurrenceTree","phyla","rankMap","getIndex","term","property","i","len","length","forEach","d","rank","rnk","idr","italics","tna","idn","old_name","split","idg","url","ids","tid","genusRes","rsg","speciesRes","rss","display_name1","display_name2","display_name3","push","phylum","indexOf","phl","newPhylum","classes","phyla_classes","j","nameClass","cll","newClass","families","phylumIndex","phyla_class_family","k","family","fml","newFamily","genera","classIndex","familyIndex","undefinedClassIndex","undefinedFamilyIndex","noFamily","splice","noClass","unranked"],"version":3,"file":"map-interface.fdd35e74.js.map","sourceRoot":"../../../../"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@macrostrat/map-interface",
-  "version": "1.5.2",
+  "version": "1.5.4",
   "description": "Map interface for Macrostrat",
   "main": "dist/cjs/index.js",
   "module": "dist/esm/index.js",
@@ -12,7 +12,7 @@
     "@macrostrat/color-utils": "^1.1.1",
     "@macrostrat/data-components": "^0.2.0",
     "@macrostrat/hyper": "^3.0.6",
-    "@macrostrat/map-interface": "1.5.2",
+    "@macrostrat/map-interface": "1.5.4",
     "@macrostrat/mapbox-react": "^2.6.2",
     "@macrostrat/mapbox-utils": "^1.6.0",
     "@macrostrat/ui-components": "^4.4.4",

package/src/index.ts

@@ -8,4 +8,4 @@ export * from "./helpers";
 export * from "./utils";
 export * from "./location-info";
 export * from "./expansion-panel";
-export * from "./map-panel";
+export * from "./location-details";

package/src/location-details/fetch.ts

@@ -0,0 +1,57 @@
+import { useAPIResult } from "@macrostrat/ui-components";
+
+const apiV2Prefix = `https://dev.macrostrat.org/api/v2`;
+const gddDomain = `https://xdd.wisc.edu`;
+const paleobioDomain = `https://paleobiodb.org`;
+
+export function fetchMapInfo(lng, lat, z) {
+  return useAPIResult(`${apiV2Prefix}/mobile/map_query_v2`, {
+    lng,
+    lat,
+    z,
+  })?.success?.data;
+}
+
+export function fetchColumnInfo(lng, lat) {
+  return useAPIResult(`${apiV2Prefix}/columns`, {
+    lat,
+    lng,
+    response: "long",
+  })?.success?.data?.[0];
+}
+
+export function fetchXddInfo(stratNames) {
+  return useAPIResult(`${gddDomain}/api/v1/snippets`, {
+    article_limit: 20,
+    term: stratNames?.map((d) => d.rank_name).join(","),
+  })?.success?.data;
+}
+
+export function fetchFossilInfo(lng, lat) {
+  const collectionResponse = useAPIResult(
+    `${paleobioDomain}/data1.2/colls/list.json?lngmin=${lng - 0.1}&lngmax=${lng + 0.1}&latmin=${lat - 0.1}&latmax=${lat + 0.1}`,
+  )?.records;
+
+  const occurrences = useAPIResult(
+    `${paleobioDomain}/data1.2/occs/list.json?lngmin=${lng - 0.1}&lngmax=${lng + 0.1}&latmin=${lat - 0.1}&latmax=${lat + 0.1}`,
+  )?.records;
+
+  if (!collectionResponse || !occurrences) {
+    return null;
+  }
+
+  try {
+    return collectionResponse.map((col) => {
+      col.occurrences = [];
+      occurrences.forEach((occ) => {
+        if (occ.cid === col.oid) {
+          col.occurrences.push(occ);
+        }
+      });
+      return col;
+    });
+  } catch (error) {
+    console.log(error);
+    return [];
+  }
+}

package/src/{map-panel/components/info-drawer → location-details}/fossil-collections/collections.tsx

@@ -1,6 +1,6 @@
 import React from "react";
 import { Tabs, Tab } from "@blueprintjs/core";
-import { makeOccurrenceTree } from "../../../utils";
+import { makeOccurrenceTree } from "../utils";
 import hyper from "@macrostrat/hyper";
 import styles from "./main.module.sass";
 const h = hyper.styled(styles);
@@ -14,7 +14,6 @@ export default function PBDBCollections({ data }) {
 }
 
 function FossilCollection({ col }) {
-  console.log("FossilCollection", col);
   let occurrenceTree = makeOccurrenceTree(col.occurrences);
   return h(
     "div.fossil-collection",

package/src/{map-panel/components/info-drawer → location-details}/fossil-collections/index.ts

@@ -3,7 +3,7 @@ import { ExpansionPanel } from "@macrostrat/map-interface";
 import PBDBCollections from "./collections";
 
 export function FossilCollections(props) {
-  const { data, expanded } = props;
+  const { data, expanded = false } = props;
 
   if (!data || data.length <= 0) {
     return null;

package/src/location-details/index.ts

@@ -0,0 +1,5 @@
+export * from "./fossil-collections";
+export * from "./xdd-panel";
+export * from "./reg-strat";
+export * from "./physiography";
+export * from "./macrostrat-linked";

package/src/{map-panel/components → location-details}/info-blocks.ts

@@ -1,5 +1,5 @@
 import hyper from "@macrostrat/hyper";
-import { hexToRgb } from "../utils";
+import { hexToRgb } from "./utils";
 import styles from "./info-blocks.module.styl";
 import { useDarkMode } from "@macrostrat/ui-components";
 import chroma from "chroma-js";
@@ -15,14 +15,14 @@ function getColor(color, darkenAmount) {
 }
 
 function IntervalChip(props) {
-  const { interval, className } = props;
+  const { interval, className, intervalURL } = props;
   const darkMode = useDarkMode();
   const darkenAmount = darkMode.isEnabled ? 2 : 0;
 
   return h(
     "a.chip-link",
     {
-      href: `/lex/intervals/${interval.int_id}`,
+      href: `${intervalURL}/${interval.int_id}`,
     },
     h(
       "div.chip.age-chip",
@@ -49,12 +49,14 @@ function Age({ age }) {
 }
 
 function AgeChip(props) {
-  const { t_int, b_int } = props;
+  const { t_int, b_int, intervalURL } = props;
+
   return h("div.age-chip-container", [
-    h(IntervalChip, { interval: b_int }),
+    h(IntervalChip, { interval: b_int, intervalURL }),
     h.if(b_int.int_id != props.t_int.int_id)(IntervalChip, {
       interval: t_int,
       className: "age-chip-t-int",
+      intervalURL,
     }),
   ]);
 }

package/src/location-details/location-details.stories.ts

@@ -0,0 +1,104 @@
+import { ComponentMeta } from "@storybook/react-vite";
+import h from "@macrostrat/hyper";
+import { RegionalStratigraphy } from "./reg-strat";
+import { Physiography } from "./physiography";
+import { MacrostratLinkedData } from "./macrostrat-linked";
+import { XddExpansion } from "./xdd-panel";
+import {
+  fetchMapInfo,
+  fetchColumnInfo,
+  fetchXddInfo,
+  fetchFossilInfo,
+} from "./fetch";
+import { FossilCollections } from "./fossil-collections";
+
+export default {
+  title: "Map interface/Location panel details",
+  // More on argTypes: https://storybook.js.org/docs/react/api/argtypes
+  args: {},
+} as ComponentMeta<any>;
+
+const lat = 44.60085563149249;
+const lng = -96.16783150353609;
+const zoom = 3.9392171056922325;
+
+export function RegionalStratigraphyExample() {
+  const mapInfo = fetchMapInfo(lng, lat, zoom);
+  const columnInfo = fetchColumnInfo(lng, lat);
+
+  if (!mapInfo || !mapInfo.mapData) {
+    return null;
+  }
+
+  return h(RegionalStratigraphy, {
+    mapInfo,
+    columnInfo,
+    columnURL: "https://dev.macrostrat.org/columns/",
+    expanded: true,
+  });
+}
+
+export function PhysiographyExample() {
+  const mapInfo = fetchMapInfo(lng, lat, zoom);
+
+  if (!mapInfo) {
+    return null;
+  }
+
+  return h(Physiography, {
+    mapInfo,
+    expanded: true,
+  });
+}
+
+export function MacrostratLinkedDataExample() {
+  const mapInfo = fetchMapInfo(lng, lat, zoom);
+
+  if (!mapInfo) {
+    return null;
+  }
+
+  const source =
+    mapInfo && mapInfo?.mapData && mapInfo?.mapData.length
+      ? mapInfo?.mapData[0]
+      : {
+          name: null,
+          descrip: null,
+          comments: null,
+          liths: [],
+          b_int: {},
+          t_int: {},
+          ref: {},
+        };
+
+  return h(MacrostratLinkedData, {
+    mapInfo,
+    source,
+    stratNameURL: "https://dev.macrostrat.org/lex/strat-names",
+    environmentURL: "https://dev.macrostrat.org/lex/environments",
+    intervalURL: "https://dev.macrostrat.org/lex/intervals",
+    lithologyURL: "https://dev.macrostrat.org/lex/lithologies",
+    expanded: true,
+  });
+}
+
+export function xddInfoExample() {
+  const mapInfo = fetchMapInfo(lng, lat, zoom);
+  const xddInfo = fetchXddInfo(mapInfo?.mapData?.[0]?.macrostrat?.strat_names);
+
+  if (!xddInfo) {
+    return null;
+  }
+
+  return h(XddExpansion, { xddInfo, expanded: true, nestedExpanded: true });
+}
+
+export function FossilsExample() {
+  const fossilInfo = fetchFossilInfo(-89.3938453, 43.0735407);
+
+  if (!fossilInfo) {
+    return null;
+  }
+
+  return h(FossilCollections, { data: fossilInfo, expanded: true });
+}

package/src/{map-panel/components/info-drawer → location-details}/macrostrat-linked.ts

@@ -1,5 +1,4 @@
 import hyper from "@macrostrat/hyper";
-import { AgeChip, AttrChip } from "../info-blocks";
 import {
   ExpansionPanel,
   ExpandableDetailsPanel,
@@ -10,11 +9,20 @@ import { scaleLinear } from "@visx/scale";
 import { AxisBottom } from "@visx/axis";
 import chroma from "chroma-js";
 import { LithologyList } from "@macrostrat/data-components";
+import { AttrChip, AgeChip } from "./info-blocks";
 
 const h = hyper.styled(styles);
 
-function MacrostratLinkedData(props) {
-  const { mapInfo, bedrockMatchExpanded, source } = props;
+export function MacrostratLinkedData(props) {
+  const {
+    mapInfo,
+    source,
+    stratNameURL,
+    environmentURL,
+    intervalURL,
+    lithologyURL,
+    expanded = true,
+  } = props;
 
   if (!mapInfo.mapData[0]) return h("div");
 
@@ -24,17 +32,17 @@ function MacrostratLinkedData(props) {
       className: "regional-panel",
       title: "Macrostrat-linked data",
       helpText: "via Macrostrat",
-      expanded: bedrockMatchExpanded,
+      expanded,
     },
     [
       h("div", { classes: expansionPanelDetailClasses }, [
-        h(MatchBasis, { source }),
-        h(AgeInformation, { mapInfo, source }),
+        h(MatchBasis, { source, stratNameURL }),
+        h(AgeInformation, { mapInfo, source, intervalURL }),
         h(Thickness, { source }),
         h(MinorFossilCollections, { source }),
         h(FossilOccs, { source }),
-        h(LithsAndClasses, { source }),
-        h(Environments, { source }),
+        h(LithsAndClasses, { source, lithologyURL }),
+        h(Environments, { source, environmentURL }),
         h(Economy, { source }),
       ]),
     ],
@@ -46,22 +54,23 @@ const expansionPanelDetailClasses = {
 };
 
 function AgeInformation(props) {
-  const { source, mapInfo } = props;
+  const { source, mapInfo, intervalURL } = props;
   const { macrostrat } = source;
 
-  if (!macrostrat?.b_age) return h(MapAgeRenderer, { mapInfo });
+  if (!macrostrat?.b_age) return h(MapAgeRenderer, { mapInfo, intervalURL });
 
-  return h(MacrostratAgeInfo, { macrostrat, mapInfo });
+  return h(MacrostratAgeInfo, { macrostrat, mapInfo, intervalURL });
 }
 
 function MapAgeRenderer(props) {
-  const { mapInfo, ...rest } = props;
+  const { mapInfo, intervalURL, ...rest } = props;
   return h(
     DescribedAgeInfo,
     {
       ageElement: h(AgeChip, {
         b_int: mapInfo.mapData[0].b_int,
         t_int: mapInfo.mapData[0].t_int,
+        intervalURL,
       }),
     },
     "Based on geologic map description.",
@@ -131,7 +140,7 @@ function AgeRefinementBar({ scale, data, color, label = null }) {
   );
 }
 
-function AgeRefinementPlot({ macrostrat, mapInfo }) {
+function AgeRefinementPlot({ macrostrat, mapInfo, intervalURL }) {
   // Plot the amount by which the age was refined
 
   const mapData = mapInfo.mapData[0];
@@ -168,7 +177,7 @@ function AgeRefinementPlot({ macrostrat, mapInfo }) {
   ]);
 }
 
-function MacrostratAgeInfoCore({ macrostrat }) {
+function MacrostratAgeInfoCore({ macrostrat, intervalURL }) {
   const { b_age, t_age, b_int, t_int } = macrostrat;
 
   if (!b_age) return null;
@@ -183,6 +192,7 @@ function MacrostratAgeInfoCore({ macrostrat }) {
       ageElement: h(AgeChip, {
         b_int: { ...b_int, int_name: age, b_age, t_age },
         t_int: { ...b_int, int_name: age, b_age, t_age },
+        intervalURL,
       }),
     },
     "Refined using the Macrostrat age model.",
@@ -198,7 +208,7 @@ function MacrostratAgeInfo(props) {
 }
 
 function MatchBasis(props) {
-  const { source } = props;
+  const { source, stratNameURL } = props;
   if (!source.macrostrat?.strat_names) return null;
 
   return h(
@@ -218,7 +228,7 @@ function MatchBasis(props) {
           h(
             "a.externalLink",
             {
-              href: "/lex/strat-names/" + name.strat_name_id,
+              href: stratNameURL + "/" + name.strat_name_id,
               key: i,
             },
             [name.rank_name],
@@ -288,7 +298,7 @@ function LithTypes(props) {
 }
 
 function LithsAndClasses(props) {
-  const { source } = props;
+  const { source, lithologyURL } = props;
   const { macrostrat } = source;
   const { liths = null, lith_types = null } = macrostrat;
 
@@ -312,7 +322,7 @@ function LithsAndClasses(props) {
       h(LithologyList, {
         lithologies,
         onClickItem: (e, lith) => {
-          window.open("/lex/lithology/" + lith.lith_id, "_self");
+          window.open(lithologyURL + "/" + lith.lith_id, "_self");
         },
       }),
     ]),
@@ -327,7 +337,7 @@ function EnvironTypes(props) {
 }
 
 function Environments(props) {
-  const { source } = props;
+  const { source, environmentURL } = props;
   const { macrostrat } = source;
   const { environs = null, environ_types = null } = macrostrat;
 
@@ -351,7 +361,8 @@ function Environments(props) {
       h(LithologyList, {
         lithologies,
         onClickItem: (e, environ) => {
-          window.open("/lex/environments/" + environ.environ_id, "_self");
+          console.log("environ", environmentURL);
+          window.open(environmentURL + "/" + environ.environ_id, "_self");
         },
       }),
     ]),
@@ -395,5 +406,3 @@ function Economy(props) {
     ]),
   );
 }
-
-export { MacrostratLinkedData };

package/src/{map-panel/components/info-drawer → location-details}/physiography.ts

@@ -1,18 +1,21 @@
 import h from "@macrostrat/hyper";
 import { ExpansionPanel } from "@macrostrat/map-interface";
 
-function Physiography(props) {
-  const { mapInfo } = props;
-  const { regions } = mapInfo;
+export function Physiography(props) {
+  const { mapInfo, expanded = true } = props;
+
+  if (!mapInfo || !mapInfo.regions) {
+    return null;
+  }
 
-  if (!mapInfo || !regions) return h("div");
+  const { regions } = mapInfo;
 
   return h.if(regions.length > 0)(
     ExpansionPanel,
     {
       classes: { root: "regional-panel" },
       title: "Physiography",
-      expanded: true,
+      expanded,
     },
     [
       regions.map((region, i) => {
@@ -25,5 +28,3 @@ function Physiography(props) {
     ],
   );
 }
-
-export { Physiography };

package/src/{map-panel/components/info-drawer → location-details}/reg-strat.ts

@@ -1,9 +1,28 @@
 import h from "@macrostrat/hyper";
 import { ExpansionPanel } from "@macrostrat/map-interface";
-import { addCommas } from "../../utils";
+import { addCommas } from "./utils";
+
+export function RegionalStratigraphy({
+  mapInfo,
+  columnInfo,
+  columnURL,
+  expanded = true,
+}) {
+  if (!mapInfo || !mapInfo.mapData) {
+    return null;
+  }
+
+  return RegionalStratigraphyInner({
+    mapInfo,
+    columnInfo,
+    columnURL,
+    expanded,
+  });
+}
+
+function RegionalStratigraphyInner(props) {
+  const { mapInfo, columnInfo, columnURL, expanded } = props;
 
-export function RegionalStratigraphy(props) {
-  const { mapInfo, columnInfo } = props;
   if (mapInfo?.mapData == null || !columnInfo) return null;
 
   return h(
@@ -11,15 +30,15 @@ export function RegionalStratigraphy(props) {
     {
       classes: { root: "regional-panel" },
       title: "Regional stratigraphy",
-      expanded: true,
+      expanded,
     },
-    [h.if(columnInfo != null)(ColumnData, { columnInfo })],
+    [h.if(columnInfo != null)(ColumnData, { columnInfo, columnURL })],
   );
 }
 
-function ColumnData({ columnInfo }) {
+function ColumnData({ columnInfo, columnURL }) {
   return h("div.column-data", [
-    h("a", { href: "/columns/" + columnInfo.col_id }, "View column page"),
+    h("a", { href: columnURL + "/" + columnInfo.col_id }, "View column page"),
     h(MapAttribute, {
       label: "Name: ",
       content: [columnInfo.col_name],

package/src/{map-panel → location-details}/utils/fossils.ts

@@ -33,8 +33,6 @@ export function makeOccurrenceTree(data) {
     return -1;
   }
 
-  console.log("Processing fossil data...", data);
-
   data.forEach((d) => {
     // Some preprocessing
     d.rank = d.rnk ? rankMap[d.rnk] : d.idr ? rankMap[d.idr] : "Unknown";

package/src/{map-panel/components/info-drawer → location-details}/xdd-panel/Journal.tsx

@@ -23,11 +23,12 @@ type JournalProps = {
   articles: XDDSnippet[];
   name: string;
   publisher: string;
+  nestedExpanded?: boolean;
 };
 
 // Still up for review
 function Journal_(props: JournalProps) {
-  const { articles, name, publisher } = props;
+  const { articles, name, publisher, nestedExpanded } = props;
 
   const helpText = articles[0].pubname;
 
@@ -36,6 +37,7 @@ function Journal_(props: JournalProps) {
     {
       title: name,
       helpText: publisher,
+      expanded: nestedExpanded,
     },
     [
       articles.map((article, i) => {

package/src/{map-panel/components/info-drawer → location-details}/xdd-panel/index.ts

@@ -16,17 +16,31 @@ export interface XDDSnippet {
   highlight: string[];
 }
 
-export function XddExpansion({ xddInfo }) {
+export function XddExpansion({
+  xddInfo,
+  expanded = false,
+  nestedExpanded = true,
+}) {
   return h(xDDPanelCore, {
     className: "regional-panel",
     data: xddInfo,
     isFetching: xddInfo == undefined || xddInfo.length === 0,
+    expanded,
+    nestedExpanded,
   });
 }
 
-export function xDDPanelCore({ isFetching, data: xddInfo, ...rest }) {
+export function xDDPanelCore({
+  isFetching,
+  data: xddInfo,
+  expanded,
+  nestedExpanded,
+  ...rest
+}) {
   const groupedData = groupSnippetsByJournal(xddInfo);
 
+  console.log("expanded", expanded);
+
   return h(
     ExpansionPanel,
     {
@@ -34,12 +48,14 @@ export function xDDPanelCore({ isFetching, data: xddInfo, ...rest }) {
       title: "Primary literature",
       helpText: "via xDD",
       ...rest,
+      expanded,
     },
     [
       h.if(isFetching)(Spinner),
       h.if(!isFetching && xddInfo.length > 0)([
         Array.from(groupedData.entries())?.map(([journal, snippets]) => {
           return h(Journal, {
+            nestedExpanded,
             name: journal,
             articles: snippets,
             publisher: snippets[0].publisher,